@nfdi4plants/arctrl 1.0.7 → 1.2.0

package/ISA/ISA.Spreadsheet/Metadata/Protocols.js

@@ -1,14 +1,14 @@
-import { reverse, cons, iterate, iterateIndexed, map as map_1, initialize, singleton, length, empty, ofArray } from "../../../fable_modules/fable-library.4.5.0/List.js";
+import { reverse, cons, iterate, iterateIndexed, map as map_1, initialize, singleton, length, empty, ofArray } from "../../../fable_modules/fable-library-js.4.13.0/List.js";
 import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
 import { Component_toAggregatedStrings, ProtocolParameter_toAggregatedStrings, Option_fromValueWithDefault, Component_fromAggregatedStrings, ProtocolParameter_fromAggregatedStrings } from "./Conversions.js";
 import { Protocol_create_Z7DFD6E67, Protocol_make } from "../../ISA/JsonTypes/Protocol.js";
-import { defaultArg, map } from "../../../fable_modules/fable-library.4.5.0/Option.js";
+import { defaultArg, map } from "../../../fable_modules/fable-library-js.4.13.0/Option.js";
 import { URIModule_fromString } from "../../ISA/JsonTypes/URI.js";
 import { SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValue_11FD62A8, SparseTable__TryGetValueDefault_5BAE6133, SparseTable_GetEmptyComments_651559CC } from "./SparseTable.js";
 import { Comment_toString, Comment_fromString } from "./Comment.js";
-import { addToDict } from "../../../fable_modules/fable-library.4.5.0/MapUtil.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.5.0/Seq2.js";
-import { stringHash } from "../../../fable_modules/fable-library.4.5.0/Util.js";
+import { addToDict } from "../../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
+import { List_distinct } from "../../../fable_modules/fable-library-js.4.13.0/Seq2.js";
+import { stringHash } from "../../../fable_modules/fable-library-js.4.13.0/Util.js";
 
 export const nameLabel = "Name";
 

package/ISA/ISA.Spreadsheet/Metadata/Publication.js

@@ -1,14 +1,14 @@
-import { reverse, cons, iterateIndexed, empty, map as map_1, toArray, initialize, singleton, length, ofArray } from "../../../fable_modules/fable-library.4.5.0/List.js";
+import { reverse, cons, iterateIndexed, empty, map as map_1, toArray, initialize, singleton, length, ofArray } from "../../../fable_modules/fable-library-js.4.13.0/List.js";
 import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
-import { defaultArg, map } from "../../../fable_modules/fable-library.4.5.0/Option.js";
+import { defaultArg, map } from "../../../fable_modules/fable-library-js.4.13.0/Option.js";
 import { URIModule_fromString } from "../../ISA/JsonTypes/URI.js";
 import { Option_fromValueWithDefault } from "./Conversions.js";
 import { Publication } from "../../ISA/JsonTypes/Publication.js";
 import { SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValue_11FD62A8, SparseTable__TryGetValueDefault_5BAE6133, SparseTable_GetEmptyComments_651559CC } from "./SparseTable.js";
 import { Comment_toString, Comment_fromString } from "./Comment.js";
-import { addToDict } from "../../../fable_modules/fable-library.4.5.0/MapUtil.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.5.0/Seq2.js";
-import { stringHash } from "../../../fable_modules/fable-library.4.5.0/Util.js";
+import { addToDict } from "../../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
+import { List_distinct } from "../../../fable_modules/fable-library-js.4.13.0/Seq2.js";
+import { stringHash } from "../../../fable_modules/fable-library-js.4.13.0/Util.js";
 
 export const pubMedIDLabel = "PubMed ID";
 

package/ISA/ISA.Spreadsheet/Metadata/SparseTable.js

@@ -1,21 +1,21 @@
-import { append as append_1, delay, tryItem, length as length_1, isEmpty, iterate, fold, tryPick, maxBy, initialize, choose, map, indexed } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
-import { defaultArg, map as map_1 } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { tryFind, ofSeq } from "../../../fable_modules/fable-library.4.5.0/Map.js";
-import { arrayHash, equalArrays, equals, comparePrimitives } from "../../../fable_modules/fable-library.4.5.0/Util.js";
-import { RowBuilder_get_Empty, RowBuilder__Combine_19F30600, RowBuilder_$ctor } from "../../../fable_modules/FsSpreadsheet.5.1.2/DSL/RowBuilder.fs.js";
-import { CellBuilder_$ctor, CellBuilder__AsCellElement_6F87C2ED } from "../../../fable_modules/FsSpreadsheet.5.1.2/DSL/CellBuilder.fs.js";
-import { Messages_format, SheetEntity$1_some_2B595 } from "../../../fable_modules/FsSpreadsheet.5.1.2/DSL/Types.fs.js";
-import { DataType } from "../../../fable_modules/FsSpreadsheet.5.1.2/Cells/FsCell.fs.js";
-import { map as map_2, toArray, initialize as initialize_1, exists, find, cons, append, empty, singleton } from "../../../fable_modules/fable-library.4.5.0/List.js";
-import { ColumnIndex, RowElement } from "../../../fable_modules/FsSpreadsheet.5.1.2/DSL/Types.fs.js";
-import { FsRangeAddress_$ctor_7E77A4A0 } from "../../../fable_modules/FsSpreadsheet.5.1.2/Ranges/FsRangeAddress.fs.js";
-import { FsAddress_$ctor_Z37302880 } from "../../../fable_modules/FsSpreadsheet.5.1.2/FsAddress.fs.js";
-import { Record } from "../../../fable_modules/fable-library.4.5.0/Types.js";
-import { record_type, list_type, class_type, tuple_type, int32_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { append as append_1, delay, tryItem, length as length_1, isEmpty, iterate, fold, tryPick, maxBy, initialize, choose, map, indexed } from "../../../fable_modules/fable-library-js.4.13.0/Seq.js";
+import { defaultArg, map as map_1 } from "../../../fable_modules/fable-library-js.4.13.0/Option.js";
+import { tryFind, ofSeq } from "../../../fable_modules/fable-library-js.4.13.0/Map.js";
+import { arrayHash, equalArrays, equals, comparePrimitives } from "../../../fable_modules/fable-library-js.4.13.0/Util.js";
+import { RowBuilder_get_Empty, RowBuilder__Combine_19F30600, RowBuilder_$ctor } from "../../../fable_modules/FsSpreadsheet.5.1.3/DSL/RowBuilder.fs.js";
+import { CellBuilder_$ctor, CellBuilder__AsCellElement_6F87C2ED } from "../../../fable_modules/FsSpreadsheet.5.1.3/DSL/CellBuilder.fs.js";
+import { Messages_format, SheetEntity$1_some_2B595 } from "../../../fable_modules/FsSpreadsheet.5.1.3/DSL/Types.fs.js";
+import { DataType } from "../../../fable_modules/FsSpreadsheet.5.1.3/Cells/FsCell.fs.js";
+import { map as map_2, toArray, initialize as initialize_1, exists, find, cons, append, empty, singleton } from "../../../fable_modules/fable-library-js.4.13.0/List.js";
+import { ColumnIndex, RowElement } from "../../../fable_modules/FsSpreadsheet.5.1.3/DSL/Types.fs.js";
+import { FsRangeAddress_$ctor_7E77A4A0 } from "../../../fable_modules/FsSpreadsheet.5.1.3/Ranges/FsRangeAddress.fs.js";
+import { FsAddress_$ctor_Z37302880 } from "../../../fable_modules/FsSpreadsheet.5.1.3/FsAddress.fs.js";
+import { Record } from "../../../fable_modules/fable-library-js.4.13.0/Types.js";
+import { record_type, list_type, class_type, tuple_type, int32_type, string_type } from "../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
 import { Seq_trySkip, Dictionary_tryGetValue } from "../CollectionAux.js";
-import { addToDict, getItemFromDict } from "../../../fable_modules/fable-library.4.5.0/MapUtil.js";
-import { Dictionary } from "../../../fable_modules/fable-library.4.5.0/MutableMap.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
+import { addToDict, getItemFromDict } from "../../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
+import { Dictionary } from "../../../fable_modules/fable-library-js.4.13.0/MutableMap.js";
+import { printf, toFail } from "../../../fable_modules/fable-library-js.4.13.0/String.js";
 import { Comment$, Remark } from "../../ISA/JsonTypes/Comment.js";
 import { Comment_wrapCommentKey, Comment_$007CComment$007C_$007C, Remark_$007CRemark$007C_$007C } from "./Comment.js";
 
@@ -359,12 +359,17 @@ export function SparseTable_FromRows_Z5579EC29(en, labels, lineNumber, prefix) {
                     const vals = Seq_trySkip(1, row);
                     const key = matchValue;
                     let matchResult, k, v_1;
-                    const activePatternResult = Comment_$007CComment$007C_$007C(key);
-                    if (activePatternResult != null) {
-                        if (vals != null) {
-                            matchResult = 0;
-                            k = activePatternResult;
-                            v_1 = vals;
+                    if (key != null) {
+                        const activePatternResult = Comment_$007CComment$007C_$007C(key);
+                        if (activePatternResult != null) {
+                            if (vals != null) {
+                                matchResult = 0;
+                                k = activePatternResult;
+                                v_1 = vals;
+                            }
+                            else {
+                                matchResult = 1;
+                            }
                         }
                         else {
                             matchResult = 1;

package/ISA/ISA.Spreadsheet/Metadata/Study.js

@@ -1,14 +1,14 @@
-import { Record } from "../../../fable_modules/fable-library.4.5.0/Types.js";
-import { record_type, list_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library-js.4.13.0/Types.js";
+import { record_type, list_type, string_type } from "../../../fable_modules/fable-library-js.4.13.0/Reflection.js";
 import { Comment$_$reflection } from "../../ISA/JsonTypes/Comment.js";
-import { ofSeq, append, toArray, reverse, cons, empty, map, ofArray } from "../../../fable_modules/fable-library.4.5.0/List.js";
+import { ofSeq, append, toArray, reverse, cons, empty, map, ofArray } from "../../../fable_modules/fable-library-js.4.13.0/List.js";
 import { Comment_toString, Comment_fromString } from "./Comment.js";
 import { SparseRowModule_fromValues, SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "./SparseTable.js";
 import { Study_fileNameFromIdentifier, createMissingIdentifier } from "../../ISA/Identifier.js";
-import { addToDict } from "../../../fable_modules/fable-library.4.5.0/MapUtil.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.5.0/Seq2.js";
-import { stringHash } from "../../../fable_modules/fable-library.4.5.0/Util.js";
+import { addToDict } from "../../../fable_modules/fable-library-js.4.13.0/MapUtil.js";
+import { defaultArg } from "../../../fable_modules/fable-library-js.4.13.0/Option.js";
+import { List_distinct } from "../../../fable_modules/fable-library-js.4.13.0/Seq2.js";
+import { stringHash } from "../../../fable_modules/fable-library-js.4.13.0/Util.js";
 import { Option_fromValueWithDefault } from "./Conversions.js";
 import { ArcTable } from "../../ISA/ArcTypes/ArcTable.js";
 import { ArcStudy } from "../../ISA/ArcTypes/ArcTypes.js";
@@ -18,7 +18,7 @@ import { toRows as toRows_3, fromRows as fromRows_3 } from "./Factors.js";
 import { toRows as toRows_4, fromRows as fromRows_4 } from "./Assays.js";
 import { toRows as toRows_5, fromRows as fromRows_5 } from "./Protocols.js";
 import { toRows as toRows_6, fromRows as fromRows_6 } from "./Contacts.js";
-import { singleton, append as append_1, delay, collect } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
+import { singleton, append as append_1, delay, collect } from "../../../fable_modules/fable-library-js.4.13.0/Seq.js";
 
 export class StudyInfo extends Record {
     constructor(Identifier, Title, Description, SubmissionDate, PublicReleaseDate, FileName, Comments) {

package/README.md

@@ -20,7 +20,7 @@ and __JavaScript__! ❤️
 ``` 
 
 ```bash
-<PackageReference Include="ARCtrl" Version="1.0.0-beta.1" />
+<PackageReference Include="ARCtrl" Version="1.1.0" />
 ```
 
 ### JavaScript
@@ -44,10 +44,27 @@ Currently we provide some documentation in form of markdown files in the `/docs`
     - verify with `npm --version` (Tested with v9.2.0)
 - [.NET SDK](https://dotnet.microsoft.com/en-us/download)
     - verify with `dotnet --version` (Tested with 7.0.306)
+- [Python](https://www.python.org/downloads/)
+    - verify with `py --version` (Tested with 3.12.2, known to work only for >=3.11)
 
 ### Local Setup
 
-1. `dotnet tool restore`
-3. `npm install`
+1. Setup dotnet tools
+
+   `dotnet tool restore`
+
+2. Install NPM dependencies
+   
+   `npm install`
+
+3. Setup python environment
+    
+   `py -m venv .venv`
+
+4. Install [Poetry](https://python-poetry.org/) and dependencies
+
+   1. `.\.venv\Scripts\python.exe -m pip install -U pip setuptools`
+   2. `.\.venv\Scripts\python.exe -m pip install poetry`
+   3. `.\.venv\Scripts\python.exe -m poetry install --no-root`
 
 Verify correct setup with `./build.cmd runtests` ✨

package/SemVer.js

@@ -1,10 +1,10 @@
-import { toString, Record } from "./fable_modules/fable-library.4.5.0/Types.js";
-import { record_type, option_type, string_type, int32_type } from "./fable_modules/fable-library.4.5.0/Reflection.js";
+import { toString, Record } from "./fable_modules/fable-library-js.4.13.0/Types.js";
+import { record_type, option_type, string_type, int32_type } from "./fable_modules/fable-library-js.4.13.0/Reflection.js";
 import { ActivePatterns_$007CRegex$007C_$007C } from "./ISA/ISA/Regex.js";
-import { parse } from "./fable_modules/fable-library.4.5.0/Int32.js";
-import { value as value_3, unwrap } from "./fable_modules/fable-library.4.5.0/Option.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "./fable_modules/fable-library.4.5.0/System.Text.js";
-import { printf, toText } from "./fable_modules/fable-library.4.5.0/String.js";
+import { parse } from "./fable_modules/fable-library-js.4.13.0/Int32.js";
+import { value as value_3, unwrap } from "./fable_modules/fable-library-js.4.13.0/Option.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "./fable_modules/fable-library-js.4.13.0/System.Text.js";
+import { printf, toText } from "./fable_modules/fable-library-js.4.13.0/String.js";
 
 export const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
 

package/Templates/Template.Json.js

@@ -1,79 +1,86 @@
-import { toString } from "../fable_modules/fable-library.4.5.0/Types.js";
-import { dict, fromString, datetimeUtc, array as array_1, guid as guid_1, object as object_1, string, succeed, andThen } from "../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { uncurry2, uncurry3 } from "../fable_modules/fable-library.4.5.0/Util.js";
+import { toString } from "../fable_modules/fable-library-js.4.13.0/Types.js";
+import { Json } from "../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
+import { dict, datetimeUtc, array as array_1, guid, object, string, succeed, andThen } from "../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Template, Organisation } from "./Template.js";
 import { ConverterOptions_$ctor } from "../ISA/ISA.Json/ConverterOptions.js";
 import { decoder as decoder_1, encoder } from "../ISA/ISA.Json/Person.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "../ISA/ISA.Json/Ontology.js";
-import { toString as toString_1, datetime, list as list_1, guid, object } from "../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { ArcTable_decoder, ArcTable_encoder } from "../ISA/ISA.Json/ArcTypes/ArcTable.js";
-import { map, delay, toList } from "../fable_modules/fable-library.4.5.0/Seq.js";
-import { printf, toFail } from "../fable_modules/fable-library.4.5.0/String.js";
-import { ofArray, map as map_1 } from "../fable_modules/fable-library.4.5.0/List.js";
-import { FSharpMap__get_Values } from "../fable_modules/fable-library.4.5.0/Map.js";
-import { defaultArg } from "../fable_modules/fable-library.4.5.0/Option.js";
+import { list as list_1 } from "../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
+import { map, delay, toList } from "../fable_modules/fable-library-js.4.13.0/Seq.js";
+import { toString as toString_1 } from "../fable_modules/fable-library-js.4.13.0/Date.js";
+import { toText, printf, toFail } from "../fable_modules/fable-library-js.4.13.0/String.js";
+import { fromString } from "../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { toString as toString_2 } from "../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+import { ofArray, map as map_1 } from "../fable_modules/fable-library-js.4.13.0/List.js";
+import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
 
-export const Organisation_encode = toString;
+export const Organisation_encode = (arg) => (new Json(0, [toString(arg)]));
 
-export const Organisation_decode = (path_1) => ((value_1) => andThen(uncurry3((textValue) => {
-    const output = Organisation.ofString(textValue);
-    return (arg10$0040) => ((arg20$0040) => succeed(output, arg10$0040, arg20$0040));
-}), string, path_1, value_1));
+export const Organisation_decode = andThen((textValue) => succeed(Organisation.ofString(textValue)), string);
 
 export function Template_encode(template) {
+    let copyOfStruct;
     let personEncoder;
     const options = ConverterOptions_$ctor();
     personEncoder = ((oa) => encoder(options, oa));
     let oaEncoder;
     const options_1 = ConverterOptions_$ctor();
     oaEncoder = ((oa_1) => OntologyAnnotation_encoder(options_1, oa_1));
-    return object([["id", guid(template.Id)], ["table", ArcTable_encoder(template.Table)], ["name", template.Name], ["description", template.Description], ["organisation", Organisation_encode(template.Organisation)], ["version", template.Version], ["authors", list_1(toList(delay(() => map(personEncoder, template.Authors))))], ["endpoint_repositories", list_1(toList(delay(() => map(oaEncoder, template.EndpointRepositories))))], ["tags", list_1(toList(delay(() => map(oaEncoder, template.Tags))))], ["last_updated", datetime(template.LastUpdated)]]);
+    return new Json(5, [[["id", new Json(0, [(copyOfStruct = template.Id, copyOfStruct)])], ["table", ArcTable_encoder(template.Table)], ["name", new Json(0, [template.Name])], ["description", new Json(0, [template.Description])], ["organisation", Organisation_encode(template.Organisation)], ["version", new Json(0, [template.Version])], ["authors", list_1(toList(delay(() => map(personEncoder, template.Authors))))], ["endpoint_repositories", list_1(toList(delay(() => map(oaEncoder, template.EndpointRepositories))))], ["tags", list_1(toList(delay(() => map(oaEncoder, template.Tags))))], ["last_updated", new Json(0, [toString_1(template.LastUpdated, "O", {})])]]]);
 }
 
 export const Template_decode = (() => {
     const personDecoder = decoder_1(ConverterOptions_$ctor());
     const oaDecoder = OntologyAnnotation_decoder(ConverterOptions_$ctor());
-    return (path_8) => ((v) => object_1((get$) => {
-        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, objectArg_9;
-        return Template.create((objectArg = get$.Required, objectArg.Field("id", guid_1)), (objectArg_1 = get$.Required, objectArg_1.Field("table", uncurry2(ArcTable_decoder))), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", uncurry2(Organisation_decode))), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), (objectArg_6 = get$.Required, objectArg_6.Field("authors", (path_4, value_4) => array_1(uncurry2(personDecoder), path_4, value_4))), (objectArg_7 = get$.Required, objectArg_7.Field("endpoint_repositories", (path_5, value_5) => array_1(uncurry2(oaDecoder), path_5, value_5))), (objectArg_8 = get$.Required, objectArg_8.Field("tags", (path_6, value_6) => array_1(uncurry2(oaDecoder), path_6, value_6))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", datetimeUtc)));
-    }, path_8, v));
+    return object((get$) => {
+        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9;
+        return Template.create((objectArg = get$.Required, objectArg.Field("id", guid)), (objectArg_1 = get$.Required, objectArg_1.Field("table", ArcTable_decoder)), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", Organisation_decode)), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), (arg_13 = array_1(personDecoder), (objectArg_6 = get$.Required, objectArg_6.Field("authors", arg_13))), (arg_15 = array_1(oaDecoder), (objectArg_7 = get$.Required, objectArg_7.Field("endpoint_repositories", arg_15))), (arg_17 = array_1(oaDecoder), (objectArg_8 = get$.Required, objectArg_8.Field("tags", arg_17))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", datetimeUtc)));
+    });
 })();
 
 export function Template_fromJsonString(jsonString) {
-    const matchValue = fromString(uncurry2(Template_decode), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Given json string cannot be parsed to Template: %A"))(matchValue.fields[0]);
+    try {
+        const matchValue = fromString(Template_decode, jsonString);
+        if (matchValue.tag === 1) {
+            throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+        }
+        else {
+            return matchValue.fields[0];
+        }
     }
-    else {
-        return matchValue.fields[0];
+    catch (exn) {
+        return toFail(printf("Error. Given json string cannot be parsed to Template: %A"))(exn);
     }
 }
 
 export function Template_toJsonString(spaces, template) {
-    return toString_1(spaces, Template_encode(template));
+    return toString_2(spaces, Template_encode(template));
 }
 
 export function Templates_encode(templateList) {
-    return object(map_1((tupledArg) => [tupledArg[0], Template_encode(tupledArg[1])], ofArray(templateList)));
+    return new Json(5, [map_1((tupledArg) => [tupledArg[0], Template_encode(tupledArg[1])], ofArray(templateList))]);
 }
 
-export const Templates_decode = (() => {
-    const d = dict(uncurry2(Template_decode));
-    return (value) => fromString(uncurry2(d), value);
-})();
+export const Templates_decode = dict(Template_decode);
 
 export function Templates_fromJsonString(jsonString) {
-    const matchValue = Templates_decode(jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Given json string cannot be parsed to Templates map: %A"))(matchValue.fields[0]);
+    try {
+        const matchValue = fromString(Templates_decode, jsonString);
+        if (matchValue.tag === 1) {
+            throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
+        }
+        else {
+            return matchValue.fields[0];
+        }
     }
-    else {
-        return Array.from(FSharpMap__get_Values(matchValue.fields[0]));
+    catch (exn) {
+        return toFail(printf("Error. Given json string cannot be parsed to Templates map: %A"))(exn);
     }
 }
 
 export function Templates_toJsonString(spaces, templateList) {
-    return toString_1(spaces, Templates_encode(templateList));
+    return toString_2(spaces, Templates_encode(templateList));
 }
 
 export function ARCtrl_Template_Template__Template_ToJson_71136F3F(this$, spaces) {

package/Templates/Template.Spreadsheet.js

@@ -1,24 +1,24 @@
-import { toString, Record, FSharpException } from "../fable_modules/fable-library.4.5.0/Types.js";
-import { record_type, list_type, string_type, class_type } from "../fable_modules/fable-library.4.5.0/Reflection.js";
-import { toArray as toArray_1, append as append_1, reverse, map, empty, ofArray } from "../fable_modules/fable-library.4.5.0/List.js";
+import { toString, Record, FSharpException } from "../fable_modules/fable-library-js.4.13.0/Types.js";
+import { record_type, list_type, string_type, class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
+import { toArray as toArray_1, append as append_1, reverse, map, empty, ofArray } from "../fable_modules/fable-library-js.4.13.0/List.js";
 import { toRows, fromRows, toSparseTable, fromSparseTable } from "../ISA/ISA.Spreadsheet/Metadata/OntologyAnnotation.js";
 import { Comment$_$reflection } from "../ISA/ISA/JsonTypes/Comment.js";
 import { Comment_fromString } from "../ISA/ISA.Spreadsheet/Metadata/Comment.js";
 import { SparseRowModule_fromFsRow, SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_tryGetValueAt, SparseTable_ToRows_6A3D4534, SparseTable_FromRows_Z5579EC29, SparseTable, SparseTable_Create_Z2192E64B, SparseTable__TryGetValueDefault_5BAE6133 } from "../ISA/ISA.Spreadsheet/Metadata/SparseTable.js";
 import { createMissingIdentifier } from "../ISA/ISA/Identifier.js";
-import { addToDict } from "../fable_modules/fable-library.4.5.0/MapUtil.js";
-import { List_distinct } from "../fable_modules/fable-library.4.5.0/Seq2.js";
-import { getEnumerator, stringHash } from "../fable_modules/fable-library.4.5.0/Util.js";
-import { tryPick, iterateIndexed, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library.4.5.0/Seq.js";
+import { addToDict } from "../fable_modules/fable-library-js.4.13.0/MapUtil.js";
+import { List_distinct } from "../fable_modules/fable-library-js.4.13.0/Seq2.js";
+import { getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.13.0/Util.js";
+import { tryPick, iterateIndexed, delay, singleton, append, head, exists, map as map_1 } from "../fable_modules/fable-library-js.4.13.0/Seq.js";
 import { Person } from "../ISA/ISA/JsonTypes/Person.js";
-import { toArray } from "../fable_modules/fable-library.4.5.0/Option.js";
+import { toArray } from "../fable_modules/fable-library-js.4.13.0/Option.js";
 import { toRows as toRows_1, fromRows as fromRows_1 } from "../ISA/ISA.Spreadsheet/Metadata/Contacts.js";
-import { parse } from "../fable_modules/fable-library.4.5.0/Guid.js";
+import { parse } from "../fable_modules/fable-library-js.4.13.0/Guid.js";
 import { Template, Organisation } from "./Template.js";
-import { FsWorksheet } from "../fable_modules/FsSpreadsheet.5.1.2/FsWorksheet.fs.js";
+import { FsWorksheet } from "../fable_modules/FsSpreadsheet.5.1.3/FsWorksheet.fs.js";
 import { toFsWorksheet, tryFromFsWorksheet } from "../ISA/ISA.Spreadsheet/AnnotationTable/ArcTable.js";
-import { now } from "../fable_modules/fable-library.4.5.0/Date.js";
-import { FsWorkbook } from "../fable_modules/FsSpreadsheet.5.1.2/FsWorkbook.fs.js";
+import { now } from "../fable_modules/fable-library-js.4.13.0/Date.js";
+import { FsWorkbook } from "../fable_modules/FsSpreadsheet.5.1.3/FsWorkbook.fs.js";
 
 export class TemplateReadError extends FSharpException {
     constructor(Data0) {

package/Templates/Template.Web.js

@@ -1,9 +1,9 @@
-import { defaultArg } from "../fable_modules/fable-library.4.5.0/Option.js";
-import { singleton } from "../fable_modules/fable-library.4.5.0/AsyncBuilder.js";
+import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
+import { singleton } from "../fable_modules/fable-library-js.4.13.0/AsyncBuilder.js";
 import { downloadFile } from "../WebRequest/WebRequest.js";
 import { Templates_fromJsonString } from "./Template.Json.js";
-import { startAsPromise } from "../fable_modules/fable-library.4.5.0/Async.js";
-import { class_type } from "../fable_modules/fable-library.4.5.0/Reflection.js";
+import { startAsPromise } from "../fable_modules/fable-library-js.4.13.0/Async.js";
+import { class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
 
 export function getTemplates(url) {
     const url_1 = defaultArg(url, "https://github.com/nfdi4plants/Swate-templates/releases/download/latest/templates.json");

package/Templates/Template.js

@@ -1,12 +1,12 @@
-import { identityHash, safeHash, stringHash, equals } from "../fable_modules/fable-library.4.5.0/Util.js";
-import { Union } from "../fable_modules/fable-library.4.5.0/Types.js";
-import { class_type, union_type, string_type } from "../fable_modules/fable-library.4.5.0/Reflection.js";
-import { defaultArg, unwrap } from "../fable_modules/fable-library.4.5.0/Option.js";
-import { newGuid } from "../fable_modules/fable-library.4.5.0/Guid.js";
+import { identityHash, safeHash, stringHash, equals } from "../fable_modules/fable-library-js.4.13.0/Util.js";
+import { Union } from "../fable_modules/fable-library-js.4.13.0/Types.js";
+import { class_type, union_type, string_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
+import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.13.0/Option.js";
+import { newGuid } from "../fable_modules/fable-library-js.4.13.0/Guid.js";
 import { ArcTable } from "../ISA/ISA/ArcTypes/ArcTable.js";
 import { SemVer_tryOfString_Z721C83C5 } from "../SemVer.js";
-import { equalsWith } from "../fable_modules/fable-library.4.5.0/Array.js";
-import { toUniversalTime, now, equals as equals_1 } from "../fable_modules/fable-library.4.5.0/Date.js";
+import { equalsWith } from "../fable_modules/fable-library-js.4.13.0/Array.js";
+import { toUniversalTime, now, equals as equals_1 } from "../fable_modules/fable-library-js.4.13.0/Date.js";
 
 export class Organisation extends Union {
     constructor(tag, fields) {

package/Templates/Templates.js

@@ -1,8 +1,8 @@
-import { defaultArg } from "../fable_modules/fable-library.4.5.0/Option.js";
-import { append, addRangeInPlace, collect, contains as contains_1 } from "../fable_modules/fable-library.4.5.0/Array.js";
-import { uncurry2, safeHash, equals } from "../fable_modules/fable-library.4.5.0/Util.js";
-import { Array_distinct } from "../fable_modules/fable-library.4.5.0/Seq2.js";
-import { class_type } from "../fable_modules/fable-library.4.5.0/Reflection.js";
+import { defaultArg } from "../fable_modules/fable-library-js.4.13.0/Option.js";
+import { append, addRangeInPlace, collect, item, contains as contains_1 } from "../fable_modules/fable-library-js.4.13.0/Array.js";
+import { uncurry2, safeHash, equals } from "../fable_modules/fable-library-js.4.13.0/Util.js";
+import { Array_distinct } from "../fable_modules/fable-library-js.4.13.0/Seq2.js";
+import { class_type } from "../fable_modules/fable-library-js.4.13.0/Reflection.js";
 
 export function TemplatesAux_getComparer(matchAll) {
     if (defaultArg(matchAll, false)) {
@@ -18,7 +18,7 @@ export function TemplatesAux_filterOnTags(tagGetter, queryTags, comparer, templa
         const templateTags = tagGetter(t);
         let isValid = void 0;
         for (let idx = 0; idx <= (queryTags.length - 1); idx++) {
-            const contains = contains_1(queryTags[idx], templateTags, {
+            const contains = contains_1(item(idx, queryTags), templateTags, {
                 Equals: equals,
                 GetHashCode: safeHash,
             });
@@ -53,7 +53,7 @@ export class Templates {
     static getDistinctOntologyAnnotations(templates) {
         const oas = [];
         for (let idx = 0; idx <= (templates.length - 1); idx++) {
-            const t = templates[idx];
+            const t = item(idx, templates);
             addRangeInPlace(t.Tags, oas);
             addRangeInPlace(t.EndpointRepositories, oas);
         }

package/WebRequest/WebRequest.Node.js

@@ -0,0 +1,15 @@
+import { awaitPromise } from "../fable_modules/fable-library-js.4.13.0/Async.js";
+import { fetch$ } from "../fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js";
+import { empty } from "../fable_modules/fable-library-js.4.13.0/List.js";
+
+export function isNode() {
+    return typeof process !== "undefined" &&
+process.versions != null &&
+process.versions.node != null;;
+}
+
+export function downloadFile(url) {
+    let pr_1, pr;
+    return awaitPromise((pr_1 = ((pr = fetch$(url, empty()), pr.then((res) => res.text()))), pr_1.then((txt) => txt)));
+}
+

package/WebRequest/WebRequest.js

@@ -1,38 +1,19 @@
-import { awaitPromise } from "../fable_modules/fable-library.4.5.0/Async.js";
-import { fetch$ } from "../fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js";
-import { empty } from "../fable_modules/fable-library.4.5.0/List.js";
-import { singleton } from "../fable_modules/fable-library.4.5.0/AsyncBuilder.js";
+import { downloadFile as downloadFile_1, isNode } from "./WebRequest.Node.js";
+import { singleton } from "../fable_modules/fable-library-js.4.13.0/AsyncBuilder.js";
 import { Http_get } from "../fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js";
-import { printf, toFail } from "../fable_modules/fable-library.4.5.0/String.js";
+import { printf, toFail } from "../fable_modules/fable-library-js.4.13.0/String.js";
 import "isomorphic-fetch";
 
-export function NodeJs_isNode() {
-    return typeof process !== "undefined" &&
-process.versions != null &&
-process.versions.node != null;;
-}
-
-export function NodeJs_downloadFile(url) {
-    let pr_1, pr;
-    return awaitPromise((pr_1 = ((pr = fetch$(url, empty()), pr.then((res) => res.text()))), pr_1.then((txt) => txt)));
-}
-
 export function downloadFile(url) {
-    let isFable = false;
-    isFable = true;
-    const browserAndDotnet = () => singleton.Delay(() => singleton.Bind(Http_get(url), (_arg) => {
-        const statusCode = _arg[0] | 0;
-        const responseText = _arg[1];
-        return singleton.Return((statusCode === 200) ? responseText : toFail(printf("Status %d => %s"))(statusCode)(responseText));
-    }));
-    if (!isFable) {
-        return browserAndDotnet();
-    }
-    else if (NodeJs_isNode()) {
-        return NodeJs_downloadFile(url);
+    if (isNode()) {
+        return downloadFile_1(url);
     }
     else {
-        return browserAndDotnet();
+        return singleton.Delay(() => singleton.Bind(Http_get(url), (_arg) => {
+            const statusCode = _arg[0] | 0;
+            const responseText = _arg[1];
+            return singleton.Return((statusCode === 200) ? responseText : toFail(printf("Status %d => %s"))(statusCode)(responseText));
+        }));
     }
 }
 

package/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js

@@ -1,11 +1,11 @@
-import { Union } from "../fable-library.4.5.0/Types.js";
-import { array_type, tuple_type, bool_type, class_type, union_type, obj_type, int32_type, string_type } from "../fable-library.4.5.0/Reflection.js";
-import { defaultArg } from "../fable-library.4.5.0/Option.js";
-import { empty } from "../fable-library.4.5.0/Seq.js";
-import { keyValueList } from "../fable-library.4.5.0/MapUtil.js";
-import { int32ToString } from "../fable-library.4.5.0/Util.js";
+import { Union } from "../fable-library-js.4.13.0/Types.js";
+import { array_type, tuple_type, bool_type, class_type, union_type, obj_type, int32_type, string_type } from "../fable-library-js.4.13.0/Reflection.js";
+import { defaultArg } from "../fable-library-js.4.13.0/Option.js";
+import { empty } from "../fable-library-js.4.13.0/Seq.js";
+import { keyValueList } from "../fable-library-js.4.13.0/MapUtil.js";
+import { int32ToString } from "../fable-library-js.4.13.0/Util.js";
 import { result } from "../Fable.Promise.2.2.2/Promise.fs.js";
-import { singleton } from "../fable-library.4.5.0/List.js";
+import { singleton } from "../fable-library-js.4.13.0/List.js";
 
 export class Types_HttpRequestHeaders extends Union {
     constructor(tag, fields) {

package/fable_modules/Fable.Promise.2.2.2/Promise.fs.js

@@ -1,6 +1,6 @@
-import { Result_MapError, Result_Map, FSharpResult$2 } from "../fable-library.4.5.0/Choice.js";
-import { class_type } from "../fable-library.4.5.0/Reflection.js";
-import { defaultOf, equals, disposeSafe, getEnumerator } from "../fable-library.4.5.0/Util.js";
+import { Result_MapError, Result_Map, FSharpResult$2 } from "../fable-library-js.4.13.0/Result.js";
+import { class_type } from "../fable-library-js.4.13.0/Reflection.js";
+import { defaultOf, equals, disposeSafe, getEnumerator } from "../fable-library-js.4.13.0/Util.js";
 
 /**
  * Creates promise (in rejected state) with supplied reason.

package/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js

@@ -1,12 +1,12 @@
-import { fromContinuations } from "../fable-library.4.5.0/Async.js";
+import { fromContinuations } from "../fable-library-js.4.13.0/Async.js";
 import { HttpResponse, ResponseContent, HttpRequest, BodyContent, HttpMethod, Header } from "./Types.fs.js";
-import { tail, head, isEmpty, ofArray as ofArray_1, singleton, append, empty } from "../fable-library.4.5.0/List.js";
-import { ofArray, empty as empty_1 } from "../fable-library.4.5.0/Map.js";
-import { disposeSafe, getEnumerator, comparePrimitives } from "../fable-library.4.5.0/Util.js";
-import { join, split, isNullOrEmpty } from "../fable-library.4.5.0/String.js";
-import { choose } from "../fable-library.4.5.0/Array.js";
-import { some } from "../fable-library.4.5.0/Option.js";
-import { singleton as singleton_1 } from "../fable-library.4.5.0/AsyncBuilder.js";
+import { tail, head, isEmpty, ofArray as ofArray_1, singleton, append, empty } from "../fable-library-js.4.13.0/List.js";
+import { ofArray, empty as empty_1 } from "../fable-library-js.4.13.0/Map.js";
+import { disposeSafe, getEnumerator, comparePrimitives } from "../fable-library-js.4.13.0/Util.js";
+import { join, split, isNullOrEmpty } from "../fable-library-js.4.13.0/String.js";
+import { choose } from "../fable-library-js.4.13.0/Array.js";
+import { some } from "../fable-library-js.4.13.0/Option.js";
+import { singleton as singleton_1 } from "../fable-library-js.4.13.0/AsyncBuilder.js";
 
 /**
  * Download a Blob

package/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js

@@ -1,5 +1,5 @@
-import { Record, Union } from "../fable-library.4.5.0/Types.js";
-import { obj_type, record_type, int32_type, option_type, bool_type, list_type, class_type, string_type, union_type } from "../fable-library.4.5.0/Reflection.js";
+import { Record, Union } from "../fable-library-js.4.13.0/Types.js";
+import { obj_type, record_type, int32_type, option_type, bool_type, list_type, class_type, string_type, union_type } from "../fable-library-js.4.13.0/Reflection.js";
 
 export class HttpMethod extends Union {
     constructor(tag, fields) {