@nfdi4plants/arctrl 1.0.0-beta.8 → 1.0.0

package/ISA/ISA.Json/Investigation.js

@@ -7,16 +7,15 @@ import { empty, singleton, append, delay, toList } from "../../fable_modules/fab
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologySourceReference_decoder, OntologySourceReference_encoder } from "./Ontology.js";
-import { decoder as decoder_5, encoder } from "./Publication.js";
-import { decoder as decoder_6, encoder as encoder_1 } from "./Person.js";
+import { decoder as decoder_6, encoder as encoder_1 } from "./Publication.js";
+import { decoder as decoder_7, encoder as encoder_2 } from "./Person.js";
 import { Study_decoder, Study_encoder } from "./Study.js";
-import { decoder as decoder_7, encoder as encoder_2 } from "./Comment.js";
+import { decoder as decoder_8, encoder as encoder_3 } from "./Comment.js";
 import { list as list_1, string, object as object_25 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { Investigation } from "../ISA/JsonTypes/Investigation.js";
-import { fromJsonString } from "./Decode.js";
-import { ArcInvestigation } from "../ISA/ArcTypes/ArcTypes.js";
+import { fromJsonString as fromJsonString_1 } from "./Decode.js";
 
-export function Investigation_genID(i) {
+export function genID(i) {
     const matchValue = i.ID;
     if (matchValue == null) {
         const matchValue_1 = i.FileName;
@@ -44,7 +43,7 @@ export function Investigation_genID(i) {
     }
 }
 
-export function Investigation_encoder(options, oa) {
+export function encoder(options, oa) {
     return object_24(choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, nil)) {
@@ -55,7 +54,7 @@ export function Investigation_encoder(options, oa) {
         }
     }, toList(delay(() => {
         let value, s;
-        return append(ConverterOptions__get_SetID(options) ? singleton(["@id", (value = Investigation_genID(oa), (typeof value === "string") ? ((s = value, s)) : nil)]) : singleton(tryInclude("@id", (value_2) => {
+        return append(ConverterOptions__get_SetID(options) ? singleton(["@id", (value = genID(oa), (typeof value === "string") ? ((s = value, s)) : nil)]) : singleton(tryInclude("@id", (value_2) => {
             let s_1;
             const value_3 = value_2;
             return (typeof value_3 === "string") ? ((s_1 = value_3, s_1)) : nil;
@@ -85,48 +84,31 @@ export function Investigation_encoder(options, oa) {
                 let s_8;
                 const value_23 = value_22;
                 return (typeof value_23 === "string") ? ((s_8 = value_23, s_8)) : nil;
-            }, oa["PublicReleaseDate"])), delay(() => append(singleton(tryInclude("ontologySourceReferences", (osr) => OntologySourceReference_encoder(options, osr), oa["OntologySourceReferences"])), delay(() => append(singleton(tryInclude("publications", (oa_1) => encoder(options, oa_1), oa["Publications"])), delay(() => append(singleton(tryInclude("people", (oa_2) => encoder_1(options, oa_2), oa["Contacts"])), delay(() => append(singleton(tryInclude("studies", (oa_3) => Study_encoder(options, oa_3), oa["Studies"])), delay(() => singleton(tryInclude("comments", (comment) => encoder_2(options, comment), oa["Comments"]))))))))))))))))))))))));
+            }, oa["PublicReleaseDate"])), delay(() => append(singleton(tryInclude("ontologySourceReferences", (osr) => OntologySourceReference_encoder(options, osr), oa["OntologySourceReferences"])), delay(() => append(singleton(tryInclude("publications", (oa_1) => encoder_1(options, oa_1), oa["Publications"])), delay(() => append(singleton(tryInclude("people", (oa_2) => encoder_2(options, oa_2), oa["Contacts"])), delay(() => append(singleton(tryInclude("studies", (oa_3) => Study_encoder(options, oa_3), oa["Studies"])), delay(() => singleton(tryInclude("comments", (comment) => encoder_3(options, comment), oa["Comments"]))))))))))))))))))))))));
         }));
     }))));
 }
 
-export function Investigation_decoder(options) {
+export function decoder(options) {
     return (path_12) => ((v) => object_25((get$) => {
-        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_15, decoder, objectArg_7, arg_17, decoder_1, objectArg_8, arg_19, decoder_2, objectArg_9, arg_21, decoder_3, objectArg_10, arg_23, decoder_4, objectArg_11;
-        return new Investigation((objectArg = get$.Optional, objectArg.Field("@id", string)), (objectArg_1 = get$.Optional, objectArg_1.Field("filename", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("identifier", string)), (objectArg_3 = get$.Optional, objectArg_3.Field("title", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("description", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", string)), (arg_15 = ((decoder = OntologySourceReference_decoder(options), (path_7) => ((value_7) => list_1(uncurry2(decoder), path_7, value_7)))), (objectArg_7 = get$.Optional, objectArg_7.Field("ontologySourceReferences", uncurry2(arg_15)))), (arg_17 = ((decoder_1 = decoder_5(options), (path_8) => ((value_8) => list_1(uncurry2(decoder_1), path_8, value_8)))), (objectArg_8 = get$.Optional, objectArg_8.Field("publications", uncurry2(arg_17)))), (arg_19 = ((decoder_2 = decoder_6(options), (path_9) => ((value_9) => list_1(uncurry2(decoder_2), path_9, value_9)))), (objectArg_9 = get$.Optional, objectArg_9.Field("people", uncurry2(arg_19)))), (arg_21 = ((decoder_3 = Study_decoder(options), (path_10) => ((value_10) => list_1(uncurry2(decoder_3), path_10, value_10)))), (objectArg_10 = get$.Optional, objectArg_10.Field("studies", uncurry2(arg_21)))), (arg_23 = ((decoder_4 = decoder_7(options), (path_11) => ((value_11) => list_1(uncurry2(decoder_4), path_11, value_11)))), (objectArg_11 = get$.Optional, objectArg_11.Field("comments", uncurry2(arg_23)))), empty_1());
+        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_15, decoder_1, objectArg_7, arg_17, decoder_2, objectArg_8, arg_19, decoder_3, objectArg_9, arg_21, decoder_4, objectArg_10, arg_23, decoder_5, objectArg_11;
+        return new Investigation((objectArg = get$.Optional, objectArg.Field("@id", string)), (objectArg_1 = get$.Optional, objectArg_1.Field("filename", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("identifier", string)), (objectArg_3 = get$.Optional, objectArg_3.Field("title", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("description", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", string)), (arg_15 = ((decoder_1 = OntologySourceReference_decoder(options), (path_7) => ((value_7) => list_1(uncurry2(decoder_1), path_7, value_7)))), (objectArg_7 = get$.Optional, objectArg_7.Field("ontologySourceReferences", uncurry2(arg_15)))), (arg_17 = ((decoder_2 = decoder_6(options), (path_8) => ((value_8) => list_1(uncurry2(decoder_2), path_8, value_8)))), (objectArg_8 = get$.Optional, objectArg_8.Field("publications", uncurry2(arg_17)))), (arg_19 = ((decoder_3 = decoder_7(options), (path_9) => ((value_9) => list_1(uncurry2(decoder_3), path_9, value_9)))), (objectArg_9 = get$.Optional, objectArg_9.Field("people", uncurry2(arg_19)))), (arg_21 = ((decoder_4 = Study_decoder(options), (path_10) => ((value_10) => list_1(uncurry2(decoder_4), path_10, value_10)))), (objectArg_10 = get$.Optional, objectArg_10.Field("studies", uncurry2(arg_21)))), (arg_23 = ((decoder_5 = decoder_8(options), (path_11) => ((value_11) => list_1(uncurry2(decoder_5), path_11, value_11)))), (objectArg_11 = get$.Optional, objectArg_11.Field("comments", uncurry2(arg_23)))), empty_1());
     }, path_12, v));
 }
 
-export function Investigation_fromJsonString(s) {
-    return fromJsonString(uncurry2(Investigation_decoder(ConverterOptions_$ctor())), s);
+export function fromJsonString(s) {
+    return fromJsonString_1(uncurry2(decoder(ConverterOptions_$ctor())), s);
 }
 
-export function Investigation_toJsonString(p) {
-    return toString(2, Investigation_encoder(ConverterOptions_$ctor(), p));
+export function toJsonString(p) {
+    return toString(2, encoder(ConverterOptions_$ctor(), p));
 }
 
 /**
  * exports in json-ld format
  */
-export function Investigation_toStringLD(i) {
+export function toStringLD(i) {
     let returnVal;
-    return toString(2, Investigation_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), i));
-}
-
-export function ArcInvestigation_fromJsonString(s) {
-    const i = fromJsonString(uncurry2(Investigation_decoder(ConverterOptions_$ctor())), s);
-    return ArcInvestigation.fromInvestigation(i);
-}
-
-export function ArcInvestigation_toJsonString(a) {
-    return toString(2, Investigation_encoder(ConverterOptions_$ctor(), a.ToInvestigation()));
-}
-
-/**
- * exports in json-ld format
- */
-export function ArcInvestigation_toStringLD(a) {
-    let returnVal;
-    return toString(2, Investigation_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), a.ToInvestigation()));
+    return toString(2, encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), i));
 }
 

package/ISA/ISA.Json/Process.js

@@ -1,6 +1,6 @@
 import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
-import { ProtocolParameter_getNameText_Z3A4310A5 } from "../ISA/JsonTypes/ProtocolParameter.js";
-import { Value_getText_72E9EF0F } from "../ISA/JsonTypes/Value.js";
+import { ProtocolParameter } from "../ISA/JsonTypes/ProtocolParameter.js";
+import { Value } from "../ISA/JsonTypes/Value.js";
 import { list as list_2, toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { map, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
 import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
@@ -41,7 +41,7 @@ export function ProcessParameterValue_genID(p) {
     }
     switch (matchResult) {
         case 0:
-            return (("#Param_" + replace(ProtocolParameter_getNameText_Z3A4310A5(c), " ", "_")) + "_") + replace(Value_getText_72E9EF0F(v), " ", "_");
+            return (("#Param_" + replace(ProtocolParameter.getNameText(c), " ", "_")) + "_") + replace(Value.getText(v), " ", "_");
         default:
             return "#EmptyParameterValue";
     }

package/ISA/ISA.Json/Study.js

@@ -20,7 +20,6 @@ import { Factor_decoder, Factor_encoder } from "./Factor.js";
 import { decoder as decoder_12, encoder as encoder_2 } from "./Comment.js";
 import { fromJsonString, uri } from "./Decode.js";
 import { Study } from "../ISA/JsonTypes/Study.js";
-import { ArcStudy } from "../ISA/ArcTypes/ArcTypes.js";
 
 export function StudyMaterials_encoder(options, oa) {
     return object_36(choose((tupledArg) => {
@@ -211,20 +210,3 @@ export function Study_toStringLD(s) {
     return toString(2, Study_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), s));
 }
 
-export function ArcStudy_fromJsonString(s) {
-    const s_1 = fromJsonString(uncurry2(Study_decoder(ConverterOptions_$ctor())), s);
-    return ArcStudy.fromStudy(s_1);
-}
-
-export function ArcStudy_toJsonString(a, assays) {
-    return toString(2, Study_encoder(ConverterOptions_$ctor(), a.ToStudy(assays)));
-}
-
-/**
- * exports in json-ld format
- */
-export function ArcStudy_toStringLD(a, assays) {
-    let returnVal;
-    return toString(2, Study_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), a.ToStudy(assays)));
-}
-

package/ISA/ISA.Spreadsheet/ArcAssay.js

@@ -127,9 +127,9 @@ export function fromFsWorkbook(doc) {
     else {
         assayMetaData = fromMetadataSheet(matchValue);
     }
-    const tables = choose(tryFromFsWorksheet, doc.GetWorksheets());
-    if (!isEmpty_1(tables)) {
-        assayMetaData.Tables = Array.from(tables);
+    const annotationTables = choose(tryFromFsWorksheet, doc.GetWorksheets());
+    if (!isEmpty_1(annotationTables)) {
+        assayMetaData.Tables = Array.from(annotationTables);
     }
     return assayMetaData;
 }

package/ISA/ISA.Spreadsheet/ArcInvestigation.js

@@ -14,7 +14,7 @@ import { toRows as toRows_1, fromRows as fromRows_1 } from "./Metadata/OntologyS
 import { toRows as toRows_2, fromRows as fromRows_2 } from "./Metadata/Publication.js";
 import { toRows as toRows_3, fromRows as fromRows_3 } from "./Metadata/Contacts.js";
 import { toRows as toRows_4, fromRows as fromRows_4 } from "./Metadata/Study.js";
-import { iterateIndexed, map as map_1, toList, collect, singleton, append as append_1, delay } from "../../fable_modules/fable-library.4.5.0/Seq.js";
+import { iterateIndexed, map as map_1, toList, empty as empty_1, collect, singleton, append as append_1, delay } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { tryFind, ofList } from "../../fable_modules/fable-library.4.5.0/Map.js";
 import { printf, toFail } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorksheet.fs.js";
@@ -242,12 +242,12 @@ export function fromRows(rows) {
     }
 }
 
-export function toRows(investigation) {
+export function toRows(isLight, investigation) {
     let remarks, rows;
-    return (remarks = ofArray(investigation.Remarks), (rows = delay(() => append_1(singleton(SparseRowModule_fromValues(["ONTOLOGY SOURCE REFERENCE"])), delay(() => append_1(toRows_1(ofArray(investigation.OntologySourceReferences)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION"])), delay(() => append_1(InvestigationInfo_toRows_Z4D87C88C(investigation), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION PUBLICATIONS"])), delay(() => append_1(toRows_2("Investigation Publication", ofArray(investigation.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION CONTACTS"])), delay(() => append_1(toRows_3("Investigation Person", ofArray(investigation.Contacts)), delay(() => collect((studyIdentifier) => {
+    return (remarks = ofArray(investigation.Remarks), (rows = delay(() => append_1(singleton(SparseRowModule_fromValues(["ONTOLOGY SOURCE REFERENCE"])), delay(() => append_1(toRows_1(ofArray(investigation.OntologySourceReferences)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION"])), delay(() => append_1(InvestigationInfo_toRows_Z4D87C88C(investigation), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION PUBLICATIONS"])), delay(() => append_1(toRows_2("Investigation Publication", ofArray(investigation.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION CONTACTS"])), delay(() => append_1(toRows_3("Investigation Person", ofArray(investigation.Contacts)), delay(() => (!isLight ? collect((studyIdentifier) => {
         const study = defaultArg(investigation.TryGetStudy(studyIdentifier), new ArcStudy(studyIdentifier));
         return append_1(singleton(SparseRowModule_fromValues(["STUDY"])), delay(() => toRows_4(study, void 0)));
-    }, investigation.RegisteredStudyIdentifiers)))))))))))))))))), (() => {
+    }, investigation.RegisteredStudyIdentifiers) : empty_1())))))))))))))))))), (() => {
         try {
             const rm = ofList(map((remark) => Remark.toTuple(remark), remarks), {
                 Compare: comparePrimitives,
@@ -305,7 +305,23 @@ export function toFsWorkbook(investigation) {
         const sheet = new FsWorksheet("isa_investigation");
         iterateIndexed((rowI, r) => {
             SparseRowModule_writeToSheet(rowI + 1, r, sheet);
-        }, toRows(investigation));
+        }, toRows(false, investigation));
+        wb.AddWorksheet(sheet);
+        return wb;
+    }
+    catch (err) {
+        const arg = err.message;
+        return toFail(printf("Could not write investigation to spreadsheet: %s"))(arg);
+    }
+}
+
+export function toLightFsWorkbook(investigation) {
+    try {
+        const wb = new FsWorkbook();
+        const sheet = new FsWorksheet("isa_investigation");
+        iterateIndexed((rowI, r) => {
+            SparseRowModule_writeToSheet(rowI + 1, r, sheet);
+        }, toRows(true, investigation));
         wb.AddWorksheet(sheet);
         return wb;
     }

package/ISA/ISA.Spreadsheet/ArcStudy.js

@@ -9,7 +9,6 @@ import { createMissingIdentifier } from "../ISA/Identifier.js";
 import { empty } from "../../fable_modules/fable-library.4.5.0/List.js";
 import { printf, toConsole } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
-import { ArcTables } from "../ISA/ArcTypes/ArcTables.js";
 import { FsWorkbook } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorkbook.fs.js";
 
 export function ArcStudy_toMetadataSheet(study, assays) {
@@ -46,10 +45,9 @@ export function ARCtrl_ISA_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(doc
         patternInput = ArcStudy_fromMetadataSheet(matchValue);
     }
     const studyMetadata = patternInput[0];
-    const sheets = choose(tryFromFsWorksheet, doc.GetWorksheets());
-    if (!isEmpty(sheets)) {
-        const updatedTables = ArcTables.updateReferenceTablesBySheets(new ArcTables(studyMetadata.Tables), new ArcTables(Array.from(sheets)), true);
-        studyMetadata.Tables = updatedTables.Tables;
+    const annotationTables = choose(tryFromFsWorksheet, doc.GetWorksheets());
+    if (!isEmpty(annotationTables)) {
+        studyMetadata.Tables = Array.from(annotationTables);
     }
     return [studyMetadata, patternInput[1]];
 }

package/ISA/ISA.Spreadsheet/Metadata/Conversions.js

@@ -6,7 +6,7 @@ import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
 import { map as map_1, fold as fold_1, ofArray, empty } from "../../../fable_modules/fable-library.4.5.0/List.js";
 import { Array_map4 } from "../CollectionAux.js";
 import { Component_toString_Z609B8895, Component_fromString_Z61E08C1 } from "../../ISA/JsonTypes/Component.js";
-import { ProtocolParameter_toString_Z3A4310A5, ProtocolParameter_make } from "../../ISA/JsonTypes/ProtocolParameter.js";
+import { ProtocolParameter } from "../../ISA/JsonTypes/ProtocolParameter.js";
 
 /**
  * If the value matches the default, a None is returned, else a Some is returned
@@ -145,7 +145,7 @@ export function Component_toAggregatedStrings(separator, cs) {
  * Returns a list of ISAJson ProtocolParameter objects from ISATab aggregated strings
  */
 export function ProtocolParameter_fromAggregatedStrings(separator, terms, source, accessions) {
-    return map((arg) => ((parameterName) => ProtocolParameter_make(void 0, parameterName))(arg), OntologyAnnotation_fromAggregatedStrings(separator, terms, source, accessions));
+    return map((arg) => ((parameterName) => ProtocolParameter.make(void 0, parameterName))(arg), OntologyAnnotation_fromAggregatedStrings(separator, terms, source, accessions));
 }
 
 /**
@@ -169,7 +169,7 @@ export function ProtocolParameter_toAggregatedStrings(separator, oas) {
             else {
                 return [toText(printf("%s%c%s"))(tupledArg[0])(separator)(term.TermName), toText(printf("%s%c%s"))(tupledArg[1])(separator)(term.TermSourceREF), toText(printf("%s%c%s"))(tupledArg[2])(separator)(term.TermAccessionNumber)];
             }
-        }, ["", "", ""], map_1(ProtocolParameter_toString_Z3A4310A5, oas));
+        }, ["", "", ""], map_1((pp) => ProtocolParameter.toString(pp), oas));
         return {
             TermAccessionNumberAgg: tupledArg_1[2],
             TermNameAgg: tupledArg_1[0],

package/SemVer.js

@@ -1,14 +1,12 @@
-import { match, create } from "./fable_modules/fable-library.4.5.0/RegExp.js";
 import { toString, Record } from "./fable_modules/fable-library.4.5.0/Types.js";
 import { record_type, option_type, string_type, int32_type } from "./fable_modules/fable-library.4.5.0/Reflection.js";
+import { ActivePatterns_$007CRegex$007C_$007C } from "./ISA/ISA/Regex.js";
 import { parse } from "./fable_modules/fable-library.4.5.0/Int32.js";
 import { value as value_3, unwrap } from "./fable_modules/fable-library.4.5.0/Option.js";
 import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "./fable_modules/fable-library.4.5.0/System.Text.js";
 import { printf, toText } from "./fable_modules/fable-library.4.5.0/String.js";
 
-const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
-
-export const SemVerAux_SemVerRegex = create(SemVerAux_Pattern);
+export const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
 
 export class SemVer extends Record {
     constructor(Major, Minor, Patch, PreRelease, Metadata) {
@@ -34,9 +32,9 @@ export function SemVer_create_Z55658624(major, minor, patch, pre, meta) {
 }
 
 export function SemVer_tryOfString_Z721C83C5(str) {
-    const m = match(SemVerAux_SemVerRegex, str);
-    const matchValue = m != null;
-    if (matchValue) {
+    const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(SemVerAux_Pattern, str);
+    if (activePatternResult != null) {
+        const m = activePatternResult;
         const g = m;
         return SemVer_create_Z55658624(parse((g.groups && g.groups.major) || "", 511, false, 32), parse((g.groups && g.groups.minor) || "", 511, false, 32), parse((g.groups && g.groups.patch) || "", 511, false, 32), unwrap(((g.groups && g.groups.pre) != null) ? ((g.groups && g.groups.pre) || "") : void 0), unwrap(((g.groups && g.groups.build) != null) ? ((g.groups && g.groups.build) || "") : void 0));
     }

package/Templates/Template.Json.js

@@ -1,16 +1,15 @@
 import { toString } from "../fable_modules/fable-library.4.5.0/Types.js";
-import { dict, fromString, datetimeUtc, array as array_1, map as map_2, list as list_2, guid as guid_1, object as object_1, string, succeed, andThen } from "../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
+import { dict, fromString, datetimeUtc, array as array_1, guid as guid_1, object as object_1, string, succeed, andThen } from "../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { uncurry2, uncurry3 } from "../fable_modules/fable-library.4.5.0/Util.js";
 import { Template, Organisation } from "./Template.js";
 import { ConverterOptions_$ctor } from "../ISA/ISA.Json/ConverterOptions.js";
-import { decoder as decoder_2, encoder } from "../ISA/ISA.Json/Person.js";
+import { decoder as decoder_1, encoder } from "../ISA/ISA.Json/Person.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "../ISA/ISA.Json/Ontology.js";
 import { toString as toString_1, datetime, list as list_1, guid, object } from "../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { ofArray, map } from "../fable_modules/fable-library.4.5.0/List.js";
-import { Process_decoder, Process_encoder } from "../ISA/ISA.Json/Process.js";
-import { map as map_1, delay, toList } from "../fable_modules/fable-library.4.5.0/Seq.js";
-import { ArcTables } from "../ISA/ISA/ArcTypes/ArcTables.js";
+import { ArcTable_decoder, ArcTable_encoder } from "../ISA/ISA.Json/ArcTypes/ArcTable.js";
+import { map, delay, toList } from "../fable_modules/fable-library.4.5.0/Seq.js";
 import { printf, toFail } from "../fable_modules/fable-library.4.5.0/String.js";
+import { ofArray, map as map_1 } from "../fable_modules/fable-library.4.5.0/List.js";
 import { FSharpMap__get_Values } from "../fable_modules/fable-library.4.5.0/Map.js";
 import { defaultArg } from "../fable_modules/fable-library.4.5.0/Option.js";
 
@@ -22,26 +21,22 @@ export const Organisation_decode = (path_1) => ((value_1) => andThen(uncurry3((t
 }), string, path_1, value_1));
 
 export function Template_encode(template) {
-    let list, options_2;
     let personEncoder;
     const options = ConverterOptions_$ctor();
     personEncoder = ((oa) => encoder(options, oa));
     let oaEncoder;
     const options_1 = ConverterOptions_$ctor();
     oaEncoder = ((oa_1) => OntologyAnnotation_encoder(options_1, oa_1));
-    return object([["id", guid(template.Id)], ["table", list_1((list = template.Table.GetProcesses(), map((options_2 = ConverterOptions_$ctor(), (oa_2) => Process_encoder(options_2, oa_2)), list)))], ["name", template.Name], ["description", template.Description], ["organisation", Organisation_encode(template.Organisation)], ["version", template.Version], ["authors", list_1(toList(delay(() => map_1(personEncoder, template.Authors))))], ["endpoint_repositories", list_1(toList(delay(() => map_1(oaEncoder, template.EndpointRepositories))))], ["tags", list_1(toList(delay(() => map_1(oaEncoder, template.Tags))))], ["last_updated", datetime(template.LastUpdated)]]);
+    return object([["id", guid(template.Id)], ["table", ArcTable_encoder(template.Table)], ["name", template.Name], ["description", template.Description], ["organisation", Organisation_encode(template.Organisation)], ["version", template.Version], ["authors", list_1(toList(delay(() => map(personEncoder, template.Authors))))], ["endpoint_repositories", list_1(toList(delay(() => map(oaEncoder, template.EndpointRepositories))))], ["tags", list_1(toList(delay(() => map(oaEncoder, template.Tags))))], ["last_updated", datetime(template.LastUpdated)]]);
 }
 
 export const Template_decode = (() => {
-    const personDecoder = decoder_2(ConverterOptions_$ctor());
+    const personDecoder = decoder_1(ConverterOptions_$ctor());
     const oaDecoder = OntologyAnnotation_decoder(ConverterOptions_$ctor());
-    return (path_10) => ((v) => object_1((get$) => {
-        let objectArg, arg_3, d, decoder, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, objectArg_9;
-        return Template.create((objectArg = get$.Required, objectArg.Field("id", guid_1)), (arg_3 = ((d = ((decoder = Process_decoder(ConverterOptions_$ctor()), (path_1) => ((value_1) => list_2(uncurry2(decoder), path_1, value_1)))), (path_2) => ((value_2) => map_2((ps) => {
-            const arctbls = ArcTables.fromProcesses(ps);
-            return arctbls.Tables[0];
-        }, uncurry2(d), path_2, value_2)))), (objectArg_1 = get$.Required, objectArg_1.Field("table", uncurry2(arg_3)))), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", uncurry2(Organisation_decode))), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), (objectArg_6 = get$.Required, objectArg_6.Field("authors", (path_6, value_6) => array_1(uncurry2(personDecoder), path_6, value_6))), (objectArg_7 = get$.Required, objectArg_7.Field("endpoint_repositories", (path_7, value_7) => array_1(uncurry2(oaDecoder), path_7, value_7))), (objectArg_8 = get$.Required, objectArg_8.Field("tags", (path_8, value_8) => array_1(uncurry2(oaDecoder), path_8, value_8))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", datetimeUtc)));
-    }, path_10, v));
+    return (path_8) => ((v) => object_1((get$) => {
+        let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, objectArg_9;
+        return Template.create((objectArg = get$.Required, objectArg.Field("id", guid_1)), (objectArg_1 = get$.Required, objectArg_1.Field("table", uncurry2(ArcTable_decoder))), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", uncurry2(Organisation_decode))), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), (objectArg_6 = get$.Required, objectArg_6.Field("authors", (path_4, value_4) => array_1(uncurry2(personDecoder), path_4, value_4))), (objectArg_7 = get$.Required, objectArg_7.Field("endpoint_repositories", (path_5, value_5) => array_1(uncurry2(oaDecoder), path_5, value_5))), (objectArg_8 = get$.Required, objectArg_8.Field("tags", (path_6, value_6) => array_1(uncurry2(oaDecoder), path_6, value_6))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", datetimeUtc)));
+    }, path_8, v));
 })();
 
 export function Template_fromJsonString(jsonString) {
@@ -59,7 +54,7 @@ export function Template_toJsonString(spaces, template) {
 }
 
 export function Templates_encode(templateList) {
-    return object(map((tupledArg) => [tupledArg[0], Template_encode(tupledArg[1])], ofArray(templateList)));
+    return object(map_1((tupledArg) => [tupledArg[0], Template_encode(tupledArg[1])], ofArray(templateList)));
 }
 
 export const Templates_decode = (() => {

package/fable_modules/project_cracked.json

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package/package.json

@@ -1,12 +1,12 @@
 {
   "name": "@nfdi4plants/arctrl",
-  "version": "1.0.0-beta.8+1c6c4fa",
+  "version": "1.0.0+b42bd6f",
   "description": "Top level ARC DataModel and API function descriptions.",
   "type": "module",
-  "main": "Index.js",
+  "main": "index.js",
   "repository": {
     "type": "git",
-    "url": "git+https://github.com/nfdi4plants/arcAPI.git"
+    "url": "git+https://github.com/nfdi4plants/ARCtrl.git"
   },
   "author": "Heinrich Lukas Weil <weil@rptu.de> (https://github.com/HLWeil)",
   "contributors": [
@@ -14,9 +14,9 @@
   ],
   "license": "ISC",
   "bugs": {
-    "url": "https://github.com/nfdi4plants/arcAPI/issues"
+    "url": "https://github.com/nfdi4plants/ARCtrl/issues"
   },
-  "homepage": "https://github.com/nfdi4plants/arcAPI#readme",
+  "homepage": "https://github.com/nfdi4plants/ARCtrl#readme",
   "dependencies": {
     "fable-library": "^1.1.1",
     "isomorphic-fetch": "^3.0.0"