@nfdi4plants/arctrl 1.0.0-beta.7 → 1.0.0-beta.9

package/ISA/ISA.Json/Process.js

@@ -1,6 +1,6 @@
 import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
-import { ProtocolParameter_getNameText_Z3A4310A5 } from "../ISA/JsonTypes/ProtocolParameter.js";
-import { Value_getText_72E9EF0F } from "../ISA/JsonTypes/Value.js";
+import { ProtocolParameter } from "../ISA/JsonTypes/ProtocolParameter.js";
+import { Value } from "../ISA/JsonTypes/Value.js";
 import { list as list_2, toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { map, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
 import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
@@ -41,7 +41,7 @@ export function ProcessParameterValue_genID(p) {
     }
     switch (matchResult) {
         case 0:
-            return (("#Param_" + replace(ProtocolParameter_getNameText_Z3A4310A5(c), " ", "_")) + "_") + replace(Value_getText_72E9EF0F(v), " ", "_");
+            return (("#Param_" + replace(ProtocolParameter.getNameText(c), " ", "_")) + "_") + replace(Value.getText(v), " ", "_");
         default:
             return "#EmptyParameterValue";
     }

package/ISA/ISA.Spreadsheet/ArcInvestigation.js

@@ -14,7 +14,7 @@ import { toRows as toRows_1, fromRows as fromRows_1 } from "./Metadata/OntologyS
 import { toRows as toRows_2, fromRows as fromRows_2 } from "./Metadata/Publication.js";
 import { toRows as toRows_3, fromRows as fromRows_3 } from "./Metadata/Contacts.js";
 import { toRows as toRows_4, fromRows as fromRows_4 } from "./Metadata/Study.js";
-import { iterateIndexed, map as map_1, toList, collect, singleton, append as append_1, delay } from "../../fable_modules/fable-library.4.5.0/Seq.js";
+import { iterateIndexed, map as map_1, toList, empty as empty_1, collect, singleton, append as append_1, delay } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { tryFind, ofList } from "../../fable_modules/fable-library.4.5.0/Map.js";
 import { printf, toFail } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorksheet.fs.js";
@@ -242,12 +242,12 @@ export function fromRows(rows) {
     }
 }
 
-export function toRows(investigation) {
+export function toRows(isLight, investigation) {
     let remarks, rows;
-    return (remarks = ofArray(investigation.Remarks), (rows = delay(() => append_1(singleton(SparseRowModule_fromValues(["ONTOLOGY SOURCE REFERENCE"])), delay(() => append_1(toRows_1(ofArray(investigation.OntologySourceReferences)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION"])), delay(() => append_1(InvestigationInfo_toRows_Z4D87C88C(investigation), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION PUBLICATIONS"])), delay(() => append_1(toRows_2("Investigation Publication", ofArray(investigation.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION CONTACTS"])), delay(() => append_1(toRows_3("Investigation Person", ofArray(investigation.Contacts)), delay(() => collect((studyIdentifier) => {
+    return (remarks = ofArray(investigation.Remarks), (rows = delay(() => append_1(singleton(SparseRowModule_fromValues(["ONTOLOGY SOURCE REFERENCE"])), delay(() => append_1(toRows_1(ofArray(investigation.OntologySourceReferences)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION"])), delay(() => append_1(InvestigationInfo_toRows_Z4D87C88C(investigation), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION PUBLICATIONS"])), delay(() => append_1(toRows_2("Investigation Publication", ofArray(investigation.Publications)), delay(() => append_1(singleton(SparseRowModule_fromValues(["INVESTIGATION CONTACTS"])), delay(() => append_1(toRows_3("Investigation Person", ofArray(investigation.Contacts)), delay(() => (!isLight ? collect((studyIdentifier) => {
         const study = defaultArg(investigation.TryGetStudy(studyIdentifier), new ArcStudy(studyIdentifier));
         return append_1(singleton(SparseRowModule_fromValues(["STUDY"])), delay(() => toRows_4(study, void 0)));
-    }, investigation.RegisteredStudyIdentifiers)))))))))))))))))), (() => {
+    }, investigation.RegisteredStudyIdentifiers) : empty_1())))))))))))))))))), (() => {
         try {
             const rm = ofList(map((remark) => Remark.toTuple(remark), remarks), {
                 Compare: comparePrimitives,
@@ -305,7 +305,23 @@ export function toFsWorkbook(investigation) {
         const sheet = new FsWorksheet("isa_investigation");
         iterateIndexed((rowI, r) => {
             SparseRowModule_writeToSheet(rowI + 1, r, sheet);
-        }, toRows(investigation));
+        }, toRows(false, investigation));
+        wb.AddWorksheet(sheet);
+        return wb;
+    }
+    catch (err) {
+        const arg = err.message;
+        return toFail(printf("Could not write investigation to spreadsheet: %s"))(arg);
+    }
+}
+
+export function toLightFsWorkbook(investigation) {
+    try {
+        const wb = new FsWorkbook();
+        const sheet = new FsWorksheet("isa_investigation");
+        iterateIndexed((rowI, r) => {
+            SparseRowModule_writeToSheet(rowI + 1, r, sheet);
+        }, toRows(true, investigation));
         wb.AddWorksheet(sheet);
         return wb;
     }

package/ISA/ISA.Spreadsheet/Metadata/Conversions.js

@@ -6,7 +6,7 @@ import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
 import { map as map_1, fold as fold_1, ofArray, empty } from "../../../fable_modules/fable-library.4.5.0/List.js";
 import { Array_map4 } from "../CollectionAux.js";
 import { Component_toString_Z609B8895, Component_fromString_Z61E08C1 } from "../../ISA/JsonTypes/Component.js";
-import { ProtocolParameter_toString_Z3A4310A5, ProtocolParameter_make } from "../../ISA/JsonTypes/ProtocolParameter.js";
+import { ProtocolParameter } from "../../ISA/JsonTypes/ProtocolParameter.js";
 
 /**
  * If the value matches the default, a None is returned, else a Some is returned
@@ -145,7 +145,7 @@ export function Component_toAggregatedStrings(separator, cs) {
  * Returns a list of ISAJson ProtocolParameter objects from ISATab aggregated strings
  */
 export function ProtocolParameter_fromAggregatedStrings(separator, terms, source, accessions) {
-    return map((arg) => ((parameterName) => ProtocolParameter_make(void 0, parameterName))(arg), OntologyAnnotation_fromAggregatedStrings(separator, terms, source, accessions));
+    return map((arg) => ((parameterName) => ProtocolParameter.make(void 0, parameterName))(arg), OntologyAnnotation_fromAggregatedStrings(separator, terms, source, accessions));
 }
 
 /**
@@ -169,7 +169,7 @@ export function ProtocolParameter_toAggregatedStrings(separator, oas) {
             else {
                 return [toText(printf("%s%c%s"))(tupledArg[0])(separator)(term.TermName), toText(printf("%s%c%s"))(tupledArg[1])(separator)(term.TermSourceREF), toText(printf("%s%c%s"))(tupledArg[2])(separator)(term.TermAccessionNumber)];
             }
-        }, ["", "", ""], map_1(ProtocolParameter_toString_Z3A4310A5, oas));
+        }, ["", "", ""], map_1((pp) => ProtocolParameter.toString(pp), oas));
         return {
             TermAccessionNumberAgg: tupledArg_1[2],
             TermNameAgg: tupledArg_1[0],

package/README.md

@@ -5,8 +5,9 @@ and __JavaScript__! ❤️
 
 | Version | Downloads |
 | :--------|-----------:|
-|![Nuget (with prereleases)](https://img.shields.io/nuget/vpre/ARCtrl?logo=nuget&color=%234fb3d9)|![Nuget](https://img.shields.io/nuget/dt/ARCtrl?color=%234FB3D9)|
-|![npm (scoped with tag)](https://img.shields.io/npm/v/%40nfdi4plants/arctrl/next?logo=npm&color=%234fb3d9)|![npm](https://img.shields.io/npm/dt/%40nfdi4plants%2Farctrl?color=%234fb3d9)|
+|<a href="https://www.nuget.org/packages/ARCtrl/"><img alt="Nuget" src="https://img.shields.io/nuget/vpre/ARCtrl?logo=nuget&color=%234fb3d9"></a>|<a href="https://www.nuget.org/packages/ARCtrl/"><img alt="Nuget" src="https://img.shields.io/nuget/dt/ARCtrl?color=%234FB3D9"></a>|
+|<a href="https://www.npmjs.com/package/@nfdi4plants/arctrl"><img alt="NPM" src="https://img.shields.io/npm/v/%40nfdi4plants/arctrl/next?logo=npm&color=%234fb3d9"></a>|<a href="https://www.npmjs.com/package/@nfdi4plants/arctrl"><img alt="NPM" src="https://img.shields.io/npm/dt/%40nfdi4plants%2Farctrl?color=%234fb3d9"></a>|
+
 
 ## Install
 

package/SemVer.js

@@ -1,14 +1,12 @@
-import { match, create } from "./fable_modules/fable-library.4.5.0/RegExp.js";
 import { toString, Record } from "./fable_modules/fable-library.4.5.0/Types.js";
 import { record_type, option_type, string_type, int32_type } from "./fable_modules/fable-library.4.5.0/Reflection.js";
+import { ActivePatterns_$007CRegex$007C_$007C } from "./ISA/ISA/Regex.js";
 import { parse } from "./fable_modules/fable-library.4.5.0/Int32.js";
 import { value as value_3, unwrap } from "./fable_modules/fable-library.4.5.0/Option.js";
 import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "./fable_modules/fable-library.4.5.0/System.Text.js";
 import { printf, toText } from "./fable_modules/fable-library.4.5.0/String.js";
 
-const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
-
-export const SemVerAux_SemVerRegex = create(SemVerAux_Pattern);
+export const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
 
 export class SemVer extends Record {
     constructor(Major, Minor, Patch, PreRelease, Metadata) {
@@ -34,9 +32,9 @@ export function SemVer_create_Z55658624(major, minor, patch, pre, meta) {
 }
 
 export function SemVer_tryOfString_Z721C83C5(str) {
-    const m = match(SemVerAux_SemVerRegex, str);
-    const matchValue = m != null;
-    if (matchValue) {
+    const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(SemVerAux_Pattern, str);
+    if (activePatternResult != null) {
+        const m = activePatternResult;
         const g = m;
         return SemVer_create_Z55658624(parse((g.groups && g.groups.major) || "", 511, false, 32), parse((g.groups && g.groups.minor) || "", 511, false, 32), parse((g.groups && g.groups.patch) || "", 511, false, 32), unwrap(((g.groups && g.groups.pre) != null) ? ((g.groups && g.groups.pre) || "") : void 0), unwrap(((g.groups && g.groups.build) != null) ? ((g.groups && g.groups.build) || "") : void 0));
     }

package/fable_modules/project_cracked.json

@@ -1 +1 @@
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package/package.json

@@ -1,12 +1,12 @@
 {
   "name": "@nfdi4plants/arctrl",
-  "version": "1.0.0-beta.7+1c6c4fa",
+  "version": "1.0.0-beta.9+1c6c4fa",
   "description": "Top level ARC DataModel and API function descriptions.",
   "type": "module",
-  "main": "Index.js",
+  "main": "index.js",
   "repository": {
     "type": "git",
-    "url": "git+https://github.com/nfdi4plants/arcAPI.git"
+    "url": "git+https://github.com/nfdi4plants/ARCtrl.git"
   },
   "author": "Heinrich Lukas Weil <weil@rptu.de> (https://github.com/HLWeil)",
   "contributors": [
@@ -14,9 +14,9 @@
   ],
   "license": "ISC",
   "bugs": {
-    "url": "https://github.com/nfdi4plants/arcAPI/issues"
+    "url": "https://github.com/nfdi4plants/ARCtrl/issues"
   },
-  "homepage": "https://github.com/nfdi4plants/arcAPI#readme",
+  "homepage": "https://github.com/nfdi4plants/ARCtrl#readme",
   "dependencies": {
     "fable-library": "^1.1.1",
     "isomorphic-fetch": "^3.0.0"