@nfdi4plants/arctrl 1.0.0-beta.4 → 1.0.0-beta.5

package/ISA/ISA/JsonTypes/Sample.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.5.0/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.5.0/String.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 import { FactorValue_$reflection } from "./FactorValue.js";
 import { Source_$reflection } from "./Source.js";

package/ISA/ISA/JsonTypes/Source.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { choose, empty, length } from "../../../fable_modules/fable-library.4.4.1/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { Record, toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { choose, empty, length } from "../../../fable_modules/fable-library.4.5.0/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.5.0/String.js";
+import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Source extends Record {

package/ISA/ISA/JsonTypes/Study.js

@@ -1,5 +1,5 @@
-import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { Record } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { getRecordFields, makeRecord, record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
 import { Publication_$reflection } from "./Publication.js";
 import { Person_$reflection } from "./Person.js";
 import { OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
@@ -10,19 +10,19 @@ import { Assay_update_722A269D, Assay_updateProtocols, Assay_getMaterials_722A26
 import { Factor_$reflection } from "./Factor.js";
 import { MaterialAttribute_$reflection } from "./MaterialAttribute.js";
 import { Comment$_$reflection } from "./Comment.js";
-import { collect, empty, filter, map, singleton, append, exists } from "../../../fable_modules/fable-library.4.4.1/List.js";
-import { stringHash, safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.4.1/Util.js";
-import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { collect, empty, filter, map, singleton, append, exists } from "../../../fable_modules/fable-library.4.5.0/List.js";
+import { stringHash, safeHash, structuralHash, equals } from "../../../fable_modules/fable-library.4.5.0/Util.js";
+import { map2 as map2_2 } from "../../../fable_modules/fable-library.4.5.0/Array.js";
 import { Dict_tryFind, Dict_ofSeqWithMerge, Update_updateOnlyByExistingAppend, Update_updateOnlyByExisting, Update_updateAppend } from "../Helper.js";
-import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { map as map_1, defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
 import { Option_fromValueWithDefault, Update_UpdateOptions, Option_mapDefault } from "../Helper.js";
 import { updateProtocols, getMaterials, getSamples, getSources, getUnits, getFactors, getCharacteristics, getProtocols } from "./ProcessSequence.js";
-import { List_distinct } from "../../../fable_modules/fable-library.4.4.1/Seq2.js";
+import { List_distinct } from "../../../fable_modules/fable-library.4.5.0/Seq2.js";
 import { Source_$reflection } from "./Source.js";
 import { Sample_$reflection } from "./Sample.js";
 import { AssayMaterials_getMaterials_35E61745 } from "./AssayMaterials.js";
 import { Material_$reflection } from "./Material.js";
-import { toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
 
 export class Study extends Record {
     constructor(ID, FileName, Identifier, Title, Description, SubmissionDate, PublicReleaseDate, Publications, Contacts, StudyDesignDescriptors, Protocols, Materials, ProcessSequence, Assays, Factors, CharacteristicCategories, UnitCategories, Comments) {

package/ISA/ISA/JsonTypes/StudyMaterials.js

@@ -1,10 +1,10 @@
-import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { Record } from "../../../fable_modules/fable-library.4.5.0/Types.js";
 import { Source_$reflection } from "./Source.js";
-import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
 import { Sample_$reflection } from "./Sample.js";
 import { Material_$reflection } from "./Material.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
-import { empty } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
+import { empty } from "../../../fable_modules/fable-library.4.5.0/List.js";
 
 export class StudyMaterials extends Record {
     constructor(Sources, Samples, OtherMaterials) {

package/ISA/ISA/JsonTypes/Value.js

@@ -1,11 +1,11 @@
-import { Union, toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { Union, toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { printf, toText } from "../../../fable_modules/fable-library.4.5.0/String.js";
 import { OntologyAnnotation, OntologyAnnotation_$reflection } from "./OntologyAnnotation.js";
-import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
-import { parse } from "../../../fable_modules/fable-library.4.4.1/Double.js";
-import { parse as parse_1 } from "../../../fable_modules/fable-library.4.4.1/Int32.js";
-import { map, defaultArg } from "../../../fable_modules/fable-library.4.4.1/Option.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { parse } from "../../../fable_modules/fable-library.4.5.0/Double.js";
+import { parse as parse_1 } from "../../../fable_modules/fable-library.4.5.0/Int32.js";
+import { map, defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
+import { int32ToString } from "../../../fable_modules/fable-library.4.5.0/Util.js";
 import { AnnotationValue_toString_Z6FAD7738 } from "./AnnotationValue.js";
 
 export class Value extends Union {

package/ISA/ISA/Regex.js

@@ -1,6 +1,6 @@
-import { create, match } from "../../fable_modules/fable-library.4.4.1/RegExp.js";
-import { value as value_1, map, some } from "../../fable_modules/fable-library.4.4.1/Option.js";
-import { parse } from "../../fable_modules/fable-library.4.4.1/Int32.js";
+import { create, match } from "../../fable_modules/fable-library.4.5.0/RegExp.js";
+import { value as value_1, map, some } from "../../fable_modules/fable-library.4.5.0/Option.js";
+import { parse } from "../../fable_modules/fable-library.4.5.0/Int32.js";
 
 export const Pattern_ExcelNumberFormat = `"(?<${"numberFormat"}>(.*?))"`;
 

package/ISA/ISA/UIHelper.js

@@ -0,0 +1,19 @@
+import { CompositeCell } from "./ArcTypes/CompositeCell.js";
+
+/**
+ * Updates current CompositeCell with information from OntologyAnnotation.
+ * 
+ * For `Term`, OntologyAnnotation (oa) is fully set. For `Unitized`, oa is set as unit while value is untouched.
+ * For `FreeText` oa.NameText is set.
+ */
+export function updateWithOA(oa, cell) {
+    switch (cell.tag) {
+        case 2:
+            return CompositeCell.createUnitized(cell.fields[0], oa);
+        case 1:
+            return CompositeCell.createFreeText(oa.NameText);
+        default:
+            return CompositeCell.createTerm(oa);
+    }
+}
+

package/ISA/ISA.Json/Assay.js

@@ -1,13 +1,13 @@
 import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
 import { tryInclude } from "./GEncode.js";
 import { Data_decoder, Data_encoder, Sample_decoder, Sample_encoder } from "./Data.js";
 import { MaterialAttribute_decoder, MaterialAttribute_encoder, Material_decoder, Material_encoder } from "./Material.js";
 import { string, list as list_1, object as object_23 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { AssayMaterials } from "../ISA/JsonTypes/AssayMaterials.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { Process_decoder, Process_encoder } from "./Process.js";

package/ISA/ISA.Json/Comment.js

@@ -1,10 +1,10 @@
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
-import { value as value_13 } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
+import { value as value_13 } from "../../fable_modules/fable-library.4.5.0/Option.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_6 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { string, object as object_7 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";

package/ISA/ISA.Json/ConverterOptions.js

@@ -1,4 +1,4 @@
-import { class_type } from "../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { class_type } from "../../fable_modules/fable-library.4.5.0/Reflection.js";
 
 export class ConverterOptions {
     constructor() {

package/ISA/ISA.Json/Data.js

@@ -1,18 +1,18 @@
 import { DataFile } from "../ISA/JsonTypes/DataFile.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { list as list_1, object as object_11, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_3, encoder } from "./Comment.js";
 import { fromJsonString, uri, hasUnknownFields } from "./Decode.js";
 import { Data } from "../ISA/JsonTypes/Data.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { MaterialAttributeValue_decoder, MaterialAttributeValue_encoder } from "./Material.js";
 import { Source } from "../ISA/JsonTypes/Source.js";
 import { FactorValue_decoder, FactorValue_encoder } from "./Factor.js";

package/ISA/ISA.Json/Decode.js

@@ -1,9 +1,9 @@
 import { fromString, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
-import { printf, toText } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
+import { printf, toText } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
-import { contains, exists } from "../../fable_modules/fable-library.4.4.1/Seq.js";
-import { stringHash } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { contains, exists } from "../../fable_modules/fable-library.4.5.0/Seq.js";
+import { stringHash } from "../../fable_modules/fable-library.4.5.0/Util.js";
 
 export function isURI(s) {
     return true;

package/ISA/ISA.Json/Factor.js

@@ -2,14 +2,14 @@ import { Value } from "../ISA/JsonTypes/Value.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { object as object_8, toString, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { array, object as object_9, string, float, int } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
 import { uri, fromJsonString } from "./Decode.js";
-import { equals, uncurry2 } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { equals, uncurry2 } from "../../fable_modules/fable-library.4.5.0/Util.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID, ConverterOptions_$ctor } from "./ConverterOptions.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_1, encoder } from "./Comment.js";
 import { Factor } from "../ISA/JsonTypes/Factor.js";

package/ISA/ISA.Json/GEncode.js

@@ -1,7 +1,7 @@
-import { value as value_1 } from "../../fable_modules/fable-library.4.4.1/Option.js";
-import { isIterable } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { value as value_1 } from "../../fable_modules/fable-library.4.5.0/Option.js";
+import { isIterable } from "../../fable_modules/fable-library.4.5.0/Util.js";
 import { nil, seq } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { map } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 
 /**
  * Try to encode the given object using the given encoder, or return Encode.nil if the object is null

package/ISA/ISA.Json/Investigation.js

@@ -1,9 +1,9 @@
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_24 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { empty as empty_1, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { empty as empty_1, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologySourceReference_decoder, OntologySourceReference_encoder } from "./Ontology.js";

package/ISA/ISA.Json/Material.js

@@ -1,12 +1,12 @@
 import { MaterialType } from "../ISA/JsonTypes/MaterialType.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { list as list_1, object as object_11, string } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
 import { ErrorReason } from "../../fable_modules/Thoth.Json.10.1.0/Types.fs.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
@@ -14,7 +14,7 @@ import { hasUnknownFields, fromJsonString, uri } from "./Decode.js";
 import { MaterialAttribute } from "../ISA/JsonTypes/MaterialAttribute.js";
 import { Value_decoder, Value_encoder } from "./Factor.js";
 import { MaterialAttributeValue } from "../ISA/JsonTypes/MaterialAttributeValue.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { Material } from "../ISA/JsonTypes/Material.js";
 
 export function MaterialType_encoder(options, value) {

package/ISA/ISA.Json/Ontology.js

@@ -1,11 +1,11 @@
 import { AnnotationValue } from "../ISA/JsonTypes/AnnotationValue.js";
 import { toString, object as object_10, nil } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
 import { array, object as object_11, string, float, int } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
-import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
+import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { decoder as decoder_1, encoder } from "./Comment.js";
@@ -13,7 +13,7 @@ import { fromJsonString, uri } from "./Decode.js";
 import { OntologySourceReference } from "../ISA/JsonTypes/OntologySourceReference.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { OntologyAnnotation } from "../ISA/JsonTypes/OntologyAnnotation.js";
-import { unwrap } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { unwrap } from "../../fable_modules/fable-library.4.5.0/Option.js";
 
 export function AnnotationValue_encoder(options, value) {
     if (value instanceof AnnotationValue) {

package/ISA/ISA.Json/Person.js

@@ -1,11 +1,11 @@
-import { tryPick } from "../../fable_modules/fable-library.4.4.1/Array.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { tryPick } from "../../fable_modules/fable-library.4.5.0/Array.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { Person } from "../ISA/JsonTypes/Person.js";
 import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";

package/ISA/ISA.Json/Process.js

@@ -1,10 +1,10 @@
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { ProtocolParameter_getNameText_Z3A4310A5 } from "../ISA/JsonTypes/ProtocolParameter.js";
 import { Value_getText_72E9EF0F } from "../ISA/JsonTypes/Value.js";
 import { list as list_2, toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { map, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { Protocol_decoder, Protocol_encoder, ProtocolParameter_decoder, ProtocolParameter_encoder } from "./Protocol.js";
@@ -16,7 +16,7 @@ import { uri, fromJsonString } from "./Decode.js";
 import { ProcessInput } from "../ISA/JsonTypes/ProcessInput.js";
 import { Data_decoder, Sample_decoder, Source_decoder, Source_encoder, Data_encoder, Sample_encoder } from "./Data.js";
 import { Material_decoder, Material_encoder } from "./Material.js";
-import { FSharpResult$2 } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
 import { ProcessOutput } from "../ISA/JsonTypes/ProcessOutput.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { decoder as decoder_4, encoder } from "./Comment.js";

package/ISA/ISA.Json/Protocol.js

@@ -1,17 +1,17 @@
-import { value as value_19 } from "../../fable_modules/fable-library.4.4.1/Option.js";
+import { value as value_19 } from "../../fable_modules/fable-library.4.5.0/Option.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
 import { toString, nil, object as object_18 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
 import { list as list_1, string, object as object_19 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { fromJsonString, uri } from "./Decode.js";
 import { ProtocolParameter } from "../ISA/JsonTypes/ProtocolParameter.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
-import { Result_Map } from "../../fable_modules/fable-library.4.4.1/Choice.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
+import { Result_Map } from "../../fable_modules/fable-library.4.5.0/Choice.js";
 import { Component, Component_decomposeName_Z721C83C5 } from "../ISA/JsonTypes/Component.js";
 import { decoder as decoder_3, encoder } from "./Comment.js";
 import { Protocol } from "../ISA/JsonTypes/Protocol.js";

package/ISA/ISA.Json/Publication.js

@@ -1,8 +1,8 @@
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { toString, nil, object as object_12 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { tryInclude } from "./GEncode.js";
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";

package/ISA/ISA.Json/Study.js

@@ -1,14 +1,14 @@
 import { toString, nil, object as object_36 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { ofArray, choose } from "../../fable_modules/fable-library.4.4.1/List.js";
-import { uncurry2, equals } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { ofArray, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
+import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
 import { tryInclude } from "./GEncode.js";
 import { Sample_decoder, Source_decoder, Sample_encoder, Source_encoder } from "./Data.js";
 import { MaterialAttribute_decoder, MaterialAttribute_encoder, Material_decoder, Material_encoder } from "./Material.js";
 import { string, list as list_1, object as object_37 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
 import { StudyMaterials } from "../ISA/JsonTypes/StudyMaterials.js";
-import { replace } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
-import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
 import { decoder as decoder_10, encoder } from "./Publication.js";
 import { decoder as decoder_11, encoder as encoder_1 } from "./Person.js";

package/ISA/ISA.Json/Validation/Fable.js

@@ -1,10 +1,10 @@
-import { Record } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { bool_type, option_type, array_type, record_type, string_type, obj_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
-import { map } from "../../../fable_modules/fable-library.4.4.1/Array.js";
-import { singleton } from "../../../fable_modules/fable-library.4.4.1/AsyncBuilder.js";
-import { awaitPromise } from "../../../fable_modules/fable-library.4.4.1/Async.js";
+import { Record } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { bool_type, option_type, array_type, record_type, string_type, obj_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { map } from "../../../fable_modules/fable-library.4.5.0/Array.js";
+import { singleton } from "../../../fable_modules/fable-library.4.5.0/AsyncBuilder.js";
+import { awaitPromise } from "../../../fable_modules/fable-library.4.5.0/Async.js";
 import * as JsonValidation from "../../../../../src/ISA/ISA.Json/Validation/JsonValidation.js";
-import { value } from "../../../fable_modules/fable-library.4.4.1/Option.js";
+import { value } from "../../../fable_modules/fable-library.4.5.0/Option.js";
 
 export class ValidationError extends Record {
     constructor(path, property, message, schema, instance, name, argument, stack) {

package/ISA/ISA.Json/Validation/JsonSchemaValidation.js

@@ -1,4 +1,4 @@
-import { singleton } from "../../../fable_modules/fable-library.4.4.1/AsyncBuilder.js";
+import { singleton } from "../../../fable_modules/fable-library.4.5.0/AsyncBuilder.js";
 import { validate } from "./Fable.js";
 import { ValidationResult, ValidationResult_OfJSchemaOutput_Z6EC48F6B } from "./ValidationResult.js";
 

package/ISA/ISA.Json/Validation/ValidationResult.js

@@ -1,5 +1,5 @@
-import { Union } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { union_type, array_type, string_type } from "../../../fable_modules/fable-library.4.4.1/Reflection.js";
+import { Union } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { union_type, array_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
 
 export class ValidationResult extends Union {
     constructor(tag, fields) {

package/ISA/ISA.Spreadsheet/AnnotationTable/ArcTable.js

@@ -1,14 +1,14 @@
-import { iterateIndexed, length, ofArray, sortBy, collect, toArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { iterateIndexed, length, ofArray, sortBy, collect, toArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../../fable_modules/fable-library.4.5.0/List.js";
 import { tryParseReferenceColumnHeader } from "../../ISA/Regex.js";
-import { map as map_1, toList, tryFind } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
+import { map as map_1, toList, tryFind } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
 import { toFsColumns, fixDeprecatedIOHeader, fromFsColumns } from "./CompositeColumn.js";
 import { ArcTable } from "../../ISA/ArcTypes/ArcTable.js";
 import { FsWorksheet } from "../../../fable_modules/FsSpreadsheet.5.0.1/FsWorksheet.fs.js";
-import { comparePrimitives } from "../../../fable_modules/fable-library.4.4.1/Util.js";
+import { comparePrimitives } from "../../../fable_modules/fable-library.4.5.0/Util.js";
 import { FsRangeAddress_$ctor_7E77A4A0 } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeAddress.fs.js";
 import { FsAddress_$ctor_Z37302880 } from "../../../fable_modules/FsSpreadsheet.5.0.1/FsAddress.fs.js";
 import { Dictionary_tryGet } from "../../../fable_modules/FsSpreadsheet.5.0.1/Cells/FsCellsCollection.fs.js";
-import { addToDict } from "../../../fable_modules/fable-library.4.4.1/MapUtil.js";
+import { addToDict } from "../../../fable_modules/fable-library.4.5.0/MapUtil.js";
 import { FsRangeBase__Cell_Z3407A44B } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeBase.fs.js";
 
 /**

package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeCell.js

@@ -1,6 +1,6 @@
-import { singleton, ofArray, head, tail, isEmpty, map } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { singleton, ofArray, head, tail, isEmpty, map } from "../../../fable_modules/fable-library.4.5.0/List.js";
 import { CompositeCell } from "../../ISA/ArcTypes/CompositeCell.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
+import { printf, toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
 import { FsCell } from "../../../fable_modules/FsSpreadsheet.5.0.1/Cells/FsCell.fs.js";
 
 export function fromFsCells(cells) {

package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeColumn.js

@@ -1,15 +1,15 @@
 import { CompositeHeader, IOType } from "../../ISA/ArcTypes/CompositeHeader.js";
-import { toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
+import { toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
 import { toFsCells, fromFsCells } from "./CompositeHeader.js";
-import { singleton as singleton_1, ofArray, item, map } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { singleton as singleton_1, ofArray, item, map } from "../../../fable_modules/fable-library.4.5.0/List.js";
 import { FsAddress__get_RowNumber } from "../../../fable_modules/FsSpreadsheet.5.0.1/FsAddress.fs.js";
 import { FsRangeAddress__get_LastAddress } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeAddress.fs.js";
 import { FsRangeBase__get_RangeAddress } from "../../../fable_modules/FsSpreadsheet.5.0.1/Ranges/FsRangeBase.fs.js";
-import { singleton, append, toList, exists, map as map_1, delay, toArray } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
+import { singleton, append, toList, exists, map as map_1, delay, toArray } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
 import { toFsCells as toFsCells_1, fromFsCells as fromFsCells_1 } from "./CompositeCell.js";
-import { rangeDouble } from "../../../fable_modules/fable-library.4.4.1/Range.js";
+import { rangeDouble } from "../../../fable_modules/fable-library.4.5.0/Range.js";
 import { CompositeColumn } from "../../ISA/ArcTypes/CompositeColumn.js";
-import { map as map_2 } from "../../../fable_modules/fable-library.4.4.1/Array.js";
+import { map as map_2 } from "../../../fable_modules/fable-library.4.5.0/Array.js";
 
 /**
  * Checks if the column header is a deprecated IO Header. If so, fixes it.

package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeHeader.js

@@ -1,11 +1,11 @@
-import { printf, toFail } from "../../../fable_modules/fable-library.4.4.1/String.js";
-import { singleton, tail, head, isEmpty, map } from "../../../fable_modules/fable-library.4.4.1/List.js";
+import { printf, toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
+import { singleton, tail, head, isEmpty, map } from "../../../fable_modules/fable-library.4.5.0/List.js";
 import { OntologyAnnotation } from "../../ISA/JsonTypes/OntologyAnnotation.js";
 import { ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CUnitColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CTSRColumnHeader$007C_$007C } from "../../ISA/Regex.js";
 import { IOType, CompositeHeader } from "../../ISA/ArcTypes/CompositeHeader.js";
 import { FsCell } from "../../../fable_modules/FsSpreadsheet.5.0.1/Cells/FsCell.fs.js";
-import { toString } from "../../../fable_modules/fable-library.4.4.1/Types.js";
-import { empty, singleton as singleton_1, append, delay, toList } from "../../../fable_modules/fable-library.4.4.1/Seq.js";
+import { toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
+import { empty, singleton as singleton_1, append, delay, toList } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
 
 export function ActivePattern_mergeIDInfo(idSpace1, localID1, idSpace2, localID2) {
     if (idSpace1 !== idSpace2) {

package/ISA/ISA.Spreadsheet/ArcAssay.js

@@ -1,14 +1,14 @@
 import { FsWorksheet } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorksheet.fs.js";
-import { iterate, isEmpty as isEmpty_1, choose, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../../fable_modules/fable-library.4.4.1/Seq.js";
+import { iterate, isEmpty as isEmpty_1, choose, tryHead, head, exists, map, singleton, append, delay, iterateIndexed } from "../../fable_modules/fable-library.4.5.0/Seq.js";
 import { SparseRowModule_tryGetValueAt, SparseRowModule_fromFsRow, SparseRowModule_fromValues, SparseRowModule_writeToSheet } from "./Metadata/SparseTable.js";
 import { fromRows as fromRows_1, toRows as toRows_1 } from "./Metadata/Assays.js";
-import { empty, isEmpty, toArray, ofArray, singleton as singleton_1 } from "../../fable_modules/fable-library.4.4.1/List.js";
+import { empty, isEmpty, toArray, ofArray, singleton as singleton_1 } from "../../fable_modules/fable-library.4.5.0/List.js";
 import { fromRows as fromRows_2, toRows as toRows_2 } from "./Metadata/Contacts.js";
-import { getEnumerator } from "../../fable_modules/fable-library.4.4.1/Util.js";
+import { getEnumerator } from "../../fable_modules/fable-library.4.5.0/Util.js";
 import { ArcAssay } from "../ISA/ArcTypes/ArcTypes.js";
 import { createMissingIdentifier } from "../ISA/Identifier.js";
-import { defaultArg } from "../../fable_modules/fable-library.4.4.1/Option.js";
-import { printf, toConsole } from "../../fable_modules/fable-library.4.4.1/String.js";
+import { defaultArg } from "../../fable_modules/fable-library.4.5.0/Option.js";
+import { printf, toConsole } from "../../fable_modules/fable-library.4.5.0/String.js";
 import { toFsWorksheet, tryFromFsWorksheet } from "./AnnotationTable/ArcTable.js";
 import { FsWorkbook } from "../../fable_modules/FsSpreadsheet.5.0.1/FsWorkbook.fs.js";