@nfdi4plants/arctrl 1.0.0-alpha8 → 1.0.0-alpha9

package/ISA/ISA/ArcTypes/ArcTypes.js

@@ -1,8 +1,8 @@
 import { map as map_1, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
-import { ArcTables_updateReferenceTablesBySheets_Z2EE88E97, ArcTables_fromProcesses_134EBDED, ArcTables__get_Tables, ArcTables__GetProcesses, ArcTables__GetRow_Z18115A39, ArcTables__GetRowAt_Z37302880, ArcTables__UpdateRow_1BFE2CFB, ArcTables__UpdateRowAt_1CF7B5DC, ArcTables__RemoveRow_Z18115A39, ArcTables__RemoveRowAt_Z37302880, ArcTables__AddRow_Z16315DE5, ArcTables__AddRowAt_Z12CDB784, ArcTables__GetColumn_Z18115A39, ArcTables__GetColumnAt_Z37302880, ArcTables__UpdateColumn_Z6083042A, ArcTables__UpdateColumnAt_21300791, ArcTables__RemoveColumn_Z18115A39, ArcTables__RemoveColumnAt_Z37302880, ArcTables__AddColumn_1FF50D3C, ArcTables__AddColumnAt_6A9784DB, ArcTables__RenameTable_Z384F8060, ArcTables__RenameTableAt_Z176EF219, ArcTables__MapTable_27DD7B1B, ArcTables__MapTableAt_8FC095C, ArcTables__RemoveTable_Z721C83C5, ArcTables__RemoveTableAt_Z524259A4, ArcTables__SetTable_51766571, ArcTables__SetTableAt_7E571736, ArcTables__UpdateTable_51766571, ArcTables__UpdateTableAt_7E571736, ArcTables__GetTable_Z721C83C5, ArcTables__GetTableAt_Z524259A4, ArcTables__InitTables_7B28792B, ArcTables__InitTable_3B406CA4, ArcTables__AddTables_Z2D453886, ArcTables__AddTable_EC12B15, ArcTables__get_TableNames, ArcTables_$ctor_Z18C2F36D, ArcTables__get_Count } from "./ArcTables.js";
-import { concat, tryFind, removeAt, tryFindIndex, item, map as map_2, delay, toList, fold, length, forAll, contains, filter, toArray } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
+import { ArcTablesAux_applyIOMap, ArcTablesAux_getIOMap, ArcTables_updateReferenceTablesBySheets_Z2EE88E97, ArcTables_fromProcesses_134EBDED, ArcTables__get_Tables, ArcTables__GetProcesses, ArcTables__GetRow_Z18115A39, ArcTables__GetRowAt_Z37302880, ArcTables__UpdateRow_1BFE2CFB, ArcTables__UpdateRowAt_1CF7B5DC, ArcTables__RemoveRow_Z18115A39, ArcTables__RemoveRowAt_Z37302880, ArcTables__AddRow_Z16315DE5, ArcTables__AddRowAt_Z12CDB784, ArcTables__GetColumn_Z18115A39, ArcTables__GetColumnAt_Z37302880, ArcTables__UpdateColumn_Z6083042A, ArcTables__UpdateColumnAt_21300791, ArcTables__RemoveColumn_Z18115A39, ArcTables__RemoveColumnAt_Z37302880, ArcTables__AddColumn_1FF50D3C, ArcTables__AddColumnAt_6A9784DB, ArcTables__RenameTable_Z384F8060, ArcTables__RenameTableAt_Z176EF219, ArcTables__MapTable_27DD7B1B, ArcTables__MapTableAt_8FC095C, ArcTables__RemoveTable_Z721C83C5, ArcTables__RemoveTableAt_Z524259A4, ArcTables__SetTable_51766571, ArcTables__SetTableAt_7E571736, ArcTables__UpdateTable_51766571, ArcTables__UpdateTableAt_7E571736, ArcTables__GetTable_Z721C83C5, ArcTables__GetTableAt_Z524259A4, ArcTables__InitTables_7B28792B, ArcTables__InitTable_3B406CA4, ArcTables__AddTables_Z2D453886, ArcTables__AddTable_EC12B15, ArcTables__get_TableNames, ArcTables_$ctor_Z18C2F36D, ArcTables__get_Count } from "./ArcTables.js";
+import { concat, collect, append as append_4, tryFind, removeAt, tryFindIndex, item, map as map_2, delay, toList, fold, length, forAll, contains, filter, toArray } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
 import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../../../fable_modules/fable-library.4.1.4/Util.js";
-import { tryFind as tryFind_1, removeInPlace, equalsWith, append as append_3, contains as contains_1, map } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { addRangeInPlace, tryFind as tryFind_1, removeInPlace, equalsWith, append as append_3, contains as contains_1, map } from "../../../fable_modules/fable-library.4.1.4/Array.js";
 import { distinctBy, Array_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
 import { printf, toText } from "../../../fable_modules/fable-library.4.1.4/String.js";
 import { create, match } from "../../../fable_modules/fable-library.4.1.4/RegExp.js";
@@ -10,7 +10,7 @@ import { OntologyAnnotation } from "../JsonTypes/OntologyAnnotation.js";
 import { Value_fromString_Z721C83C5, Value__get_Text } from "../JsonTypes/Value.js";
 import { AnnotationValue } from "../JsonTypes/AnnotationValue.js";
 import { AssayMaterials_get_empty, AssayMaterials_create_Z253F0553 } from "../JsonTypes/AssayMaterials.js";
-import { Option_fromValueWithDefault } from "../Helper.js";
+import { HashCodes_boxHashOption, HashCodes_boxHashArray, Option_fromValueWithDefault } from "../Helper.js";
 import { unzip, ofSeq, map as map_3, toArray as toArray_1, ofArray, empty } from "../../../fable_modules/fable-library.4.1.4/List.js";
 import { getSources, getProtocols, getUnits, getCharacteristics, getData, getMaterials, getSamples } from "../JsonTypes/ProcessSequence.js";
 import { Assay_create_3D372A24 } from "../JsonTypes/Assay.js";
@@ -502,7 +502,11 @@ export class ArcAssay {
         }
         const nextComments = map((c) => c.Copy(), this$.Comments);
         const nextPerformers = map((c_1) => c_1.Copy(), this$.Performers);
-        return new ArcAssay(this$.Identifier, unwrap(this$.MeasurementType), unwrap(this$.TechnologyType), unwrap(this$.TechnologyPlatform), nextTables, nextPerformers, nextComments);
+        const arg = this$.Identifier;
+        const arg_1 = this$.MeasurementType;
+        const arg_2 = this$.TechnologyType;
+        const arg_3 = this$.TechnologyPlatform;
+        return ArcAssay.make(arg, arg_1, arg_2, arg_3, nextTables, nextPerformers, nextComments);
     }
     UpdateBy(assay, onlyReplaceExisting, appendSequences) {
         const this$ = this;
@@ -673,6 +677,10 @@ export class ArcAssay {
         const this$ = this;
         return (other instanceof ArcAssay) && ((assay = other, this$.StructurallyEquals(assay)));
     }
+    GetHashCode() {
+        const this$ = this;
+        return HashCodes_boxHashArray([this$.Identifier, HashCodes_boxHashOption(this$.MeasurementType), HashCodes_boxHashOption(this$.TechnologyType), HashCodes_boxHashOption(this$.TechnologyPlatform), HashCodes_boxHashArray(Array.from(this$.Tables)), HashCodes_boxHashArray(this$.Performers), HashCodes_boxHashArray(this$.Comments)]) | 0;
+    }
 }
 
 export function ArcAssay_$reflection() {
@@ -692,7 +700,7 @@ export class ArcStudy {
         const registeredAssayIdentifiers_1 = defaultArg(registeredAssayIdentifiers, []);
         const factors_1 = defaultArg(factors, []);
         const comments_1 = defaultArg(comments, []);
-        this["identifier@641"] = identifier;
+        this["identifier@653"] = identifier;
         this.investigation = void 0;
         this["Title@"] = title;
         this["Description@"] = description;
@@ -708,11 +716,11 @@ export class ArcStudy {
     }
     get Identifier() {
         const this$ = this;
-        return this$["identifier@641"];
+        return this$["identifier@653"];
     }
     set Identifier(i) {
         const this$ = this;
-        this$["identifier@641"] = i;
+        this$["identifier@653"] = i;
     }
     get Investigation() {
         const this$ = this;
@@ -1350,7 +1358,12 @@ export class ArcStudy {
         const nextContacts = map((c_2) => c_2.Copy(), this$.Contacts);
         const nextPublications = map((c_3) => c_3.Copy(), this$.Publications);
         const nextStudyDesignDescriptors = map((c_4) => c_4.Copy(), this$.StudyDesignDescriptors);
-        return new ArcStudy(this$.Identifier, unwrap(this$.Title), unwrap(this$.Description), unwrap(this$.SubmissionDate), unwrap(this$.PublicReleaseDate), nextPublications, nextContacts, nextStudyDesignDescriptors, nextTables, nextAssayIdentifiers, nextFactors, nextComments);
+        const arg = this$.Identifier;
+        const arg_1 = this$.Title;
+        const arg_2 = this$.Description;
+        const arg_3 = this$.SubmissionDate;
+        const arg_4 = this$.PublicReleaseDate;
+        return ArcStudy.make(arg, arg_1, arg_2, arg_3, arg_4, nextPublications, nextContacts, nextStudyDesignDescriptors, nextTables, nextAssayIdentifiers, nextFactors, nextComments);
     }
     UpdateReferenceByStudyFile(study, onlyReplaceExisting, keepUnusedRefTables) {
         const this$ = this;
@@ -1478,6 +1491,10 @@ export class ArcStudy {
         const this$ = this;
         return (other instanceof ArcStudy) && ((s = other, this$.StructurallyEquals(s)));
     }
+    GetHashCode() {
+        const this$ = this;
+        return HashCodes_boxHashArray([this$.Identifier, HashCodes_boxHashOption(this$.Title), HashCodes_boxHashOption(this$.Description), HashCodes_boxHashOption(this$.SubmissionDate), HashCodes_boxHashOption(this$.PublicReleaseDate), HashCodes_boxHashArray(this$.Publications), HashCodes_boxHashArray(this$.Contacts), HashCodes_boxHashArray(this$.StudyDesignDescriptors), HashCodes_boxHashArray(Array.from(this$.Tables)), HashCodes_boxHashArray(Array.from(this$.RegisteredAssayIdentifiers)), HashCodes_boxHashArray(this$.Factors), HashCodes_boxHashArray(this$.Comments)]) | 0;
+    }
 }
 
 export function ArcStudy_$reflection() {
@@ -1524,7 +1541,7 @@ export class ArcInvestigation {
         const registeredStudyIdentifiers_1 = defaultArg(registeredStudyIdentifiers, []);
         const comments_1 = defaultArg(comments, []);
         const remarks_1 = defaultArg(remarks, []);
-        this["identifier@1292"] = identifier;
+        this["identifier@1321"] = identifier;
         this["Title@"] = title;
         this["Description@"] = description;
         this["SubmissionDate@"] = submissionDate;
@@ -1537,15 +1554,15 @@ export class ArcInvestigation {
         this["RegisteredStudyIdentifiers@"] = registeredStudyIdentifiers_1;
         this["Comments@"] = comments_1;
         this["Remarks@"] = remarks_1;
-        this["init@1273"] = 1;
+        this["init@1302"] = 1;
     }
     get Identifier() {
         const this$ = this;
-        return this$["identifier@1292"];
+        return this$["identifier@1321"];
     }
     set Identifier(i) {
         const this$ = this;
-        this$["identifier@1292"] = i;
+        this$["identifier@1321"] = i;
     }
     get Title() {
         const __ = this;
@@ -2012,6 +2029,54 @@ export class ArcInvestigation {
             return copy;
         };
     }
+    GetAllPersons() {
+        const this$ = this;
+        const persons = [];
+        let enumerator = getEnumerator(this$.Assays);
+        try {
+            while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+                const a = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                addRangeInPlace(a.Performers, persons);
+            }
+        }
+        finally {
+            disposeSafe(enumerator);
+        }
+        let enumerator_1 = getEnumerator(this$.Studies);
+        try {
+            while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
+                const s = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                addRangeInPlace(s.Contacts, persons);
+            }
+        }
+        finally {
+            disposeSafe(enumerator_1);
+        }
+        addRangeInPlace(this$.Contacts, persons);
+        return Array_distinct(Array.from(persons), {
+            Equals: equals,
+            GetHashCode: safeHash,
+        });
+    }
+    GetAllPublications() {
+        const this$ = this;
+        const pubs = [];
+        let enumerator = getEnumerator(this$.Studies);
+        try {
+            while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+                const s = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                addRangeInPlace(s.Publications, pubs);
+            }
+        }
+        finally {
+            disposeSafe(enumerator);
+        }
+        addRangeInPlace(this$.Publications, pubs);
+        return Array_distinct(Array.from(pubs), {
+            Equals: equals,
+            GetHashCode: safeHash,
+        });
+    }
     DeregisterMissingAssays() {
         const this$ = this;
         const inv = this$;
@@ -2048,6 +2113,31 @@ export class ArcInvestigation {
             return copy;
         };
     }
+    UpdateIOTypeByEntityID() {
+        let arg;
+        const this$ = this;
+        const ioMap = ArcTablesAux_getIOMap((arg = toList(delay(() => append_4(collect((study) => study.Tables, this$.Studies), delay(() => collect((assay) => assay.Tables, this$.Assays))))), Array.from(arg)));
+        let enumerator = getEnumerator(this$.Studies);
+        try {
+            while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+                const study_1 = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                ArcTablesAux_applyIOMap(ioMap, study_1.Tables);
+            }
+        }
+        finally {
+            disposeSafe(enumerator);
+        }
+        let enumerator_1 = getEnumerator(this$.Assays);
+        try {
+            while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
+                const assay_1 = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                ArcTablesAux_applyIOMap(ioMap, assay_1.Tables);
+            }
+        }
+        finally {
+            disposeSafe(enumerator_1);
+        }
+    }
     Copy() {
         const this$ = this;
         const nextAssays = [];
@@ -2175,6 +2265,10 @@ export class ArcInvestigation {
         const this$ = this;
         return (other instanceof ArcInvestigation) && ((i = other, this$.StructurallyEquals(i)));
     }
+    GetHashCode() {
+        const this$ = this;
+        return HashCodes_boxHashArray([this$.Identifier, HashCodes_boxHashOption(this$.Title), HashCodes_boxHashOption(this$.Description), HashCodes_boxHashOption(this$.SubmissionDate), HashCodes_boxHashOption(this$.PublicReleaseDate), HashCodes_boxHashArray(this$.Publications), HashCodes_boxHashArray(this$.Contacts), HashCodes_boxHashArray(this$.OntologySourceReferences), HashCodes_boxHashArray(Array.from(this$.Assays)), HashCodes_boxHashArray(Array.from(this$.Studies)), HashCodes_boxHashArray(Array.from(this$.RegisteredStudyIdentifiers)), HashCodes_boxHashArray(this$.Comments), HashCodes_boxHashArray(this$.Remarks)]) | 0;
+    }
 }
 
 export function ArcInvestigation_$reflection() {

package/ISA/ISA/ArcTypes/CompositeColumn.js

@@ -1,4 +1,5 @@
 import { defaultArg } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { empty, singleton, collect, delay, toArray } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
 import { Record } from "../../../fable_modules/fable-library.4.1.4/Types.js";
 import { CompositeHeader_$reflection } from "./CompositeHeader.js";
 import { CompositeCell_$reflection } from "./CompositeCell.js";
@@ -13,7 +14,7 @@ export class CompositeColumn extends Record {
     static create(header, cells) {
         return new CompositeColumn(header, defaultArg(cells, []));
     }
-    validate(raiseException) {
+    Validate(raiseException) {
         const this$ = this;
         const raiseExeption = defaultArg(raiseException, false);
         const header = this$.Header;
@@ -34,6 +35,11 @@ export class CompositeColumn extends Record {
             return false;
         }
     }
+    TryGetColumnUnits() {
+        const this$ = this;
+        const arr = toArray(delay(() => collect((cell) => (cell.isUnitized ? singleton(cell.AsUnitized[1]) : empty()), this$.Cells)));
+        return (arr.length === 0) ? void 0 : arr;
+    }
 }
 
 export function CompositeColumn_$reflection() {

package/ISA/ISA/ArcTypes/CompositeHeader.js

@@ -2,6 +2,7 @@ import { map } from "../../../fable_modules/fable-library.4.1.4/Array.js";
 import { union_type, string_type, getUnionCases, name } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
 import { Union, toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
 import { ActivePatterns_$007CTermColumn$007C_$007C, Pattern_OutputPattern, Pattern_InputPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseIOTypeHeader } from "../Regex.js";
+import { equals } from "../../../fable_modules/fable-library.4.1.4/Util.js";
 import { printf, toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "../JsonTypes/OntologyAnnotation.js";
 import { ProtocolParameter_create_Z6C54B221 } from "../JsonTypes/ProtocolParameter.js";
@@ -40,6 +41,82 @@ export class IOType extends Union {
         };
         return (this$.tag === 6) ? stringCreate(this$.fields[0]) : stringCreate(this$);
     }
+    Merge(other) {
+        const this$ = this;
+        switch (this$.tag) {
+            case 4:
+                switch (other.tag) {
+                    case 0:
+                        return new IOType(4, []);
+                    case 2:
+                        return new IOType(4, []);
+                    case 3:
+                        return new IOType(4, []);
+                    case 4:
+                        return new IOType(4, []);
+                    default:
+                        throw new Error(`ImageFile IO column and ${other} can not be merged`);
+                }
+            case 3:
+                switch (other.tag) {
+                    case 0:
+                        return new IOType(3, []);
+                    case 2:
+                        return new IOType(3, []);
+                    case 3:
+                        return new IOType(3, []);
+                    case 4:
+                        return new IOType(4, []);
+                    default:
+                        throw new Error(`DerivedDataFile IO column and ${other} can not be merged`);
+                }
+            case 2:
+                switch (other.tag) {
+                    case 0:
+                        return new IOType(2, []);
+                    case 2:
+                        return new IOType(2, []);
+                    case 3:
+                        return new IOType(3, []);
+                    case 4:
+                        return new IOType(4, []);
+                    default:
+                        throw new Error(`RawDataFile IO column and ${other} can not be merged`);
+                }
+            case 1:
+                switch (other.tag) {
+                    case 0:
+                        return new IOType(1, []);
+                    case 1:
+                        return new IOType(1, []);
+                    default:
+                        throw new Error(`Sample IO column and ${other} can not be merged`);
+                }
+            case 0:
+                return (other.tag === 0) ? (new IOType(0, [])) : other;
+            case 5:
+                switch (other.tag) {
+                    case 0:
+                        return new IOType(5, []);
+                    case 5:
+                        return new IOType(5, []);
+                    default:
+                        throw new Error(`Material IO column and ${other} can not be merged`);
+                }
+            default:
+                if (other.tag === 6) {
+                    if (this$.fields[0] === other.fields[0]) {
+                        return new IOType(6, [this$.fields[0]]);
+                    }
+                    else {
+                        throw new Error(`FreeText IO column names ${this$.fields[0]} and ${other.fields[0]} do differ`);
+                    }
+                }
+                else {
+                    throw new Error(`FreeText IO column and ${other} can not be merged`);
+                }
+        }
+    }
     toString() {
         const this$ = this;
         return (this$.tag === 1) ? "Sample Name" : ((this$.tag === 2) ? "Raw Data File" : ((this$.tag === 3) ? "Derived Data File" : ((this$.tag === 4) ? "Image File" : ((this$.tag === 5) ? "Material" : ((this$.tag === 6) ? this$.fields[0] : "Source Name")))));
@@ -57,6 +134,87 @@ export class IOType extends Union {
             return IOType.ofString(s);
         }
     }
+    GetUITooltip() {
+        const this$ = this;
+        return IOType.getUITooltip(this$);
+    }
+    static getUITooltip(iotype) {
+        let matchResult;
+        if (typeof iotype === "string") {
+            if (equals(iotype, "Source")) {
+                matchResult = 0;
+            }
+            else if (equals(iotype, "Sample")) {
+                matchResult = 1;
+            }
+            else if (equals(iotype, "RawDataFile")) {
+                matchResult = 2;
+            }
+            else if (equals(iotype, "DerivedDataFile")) {
+                matchResult = 3;
+            }
+            else if (equals(iotype, "ImageFile")) {
+                matchResult = 4;
+            }
+            else if (equals(iotype, "Material")) {
+                matchResult = 5;
+            }
+            else if (equals(iotype, "FreeText")) {
+                matchResult = 6;
+            }
+            else {
+                matchResult = 7;
+            }
+        }
+        else {
+            switch (iotype.tag) {
+                case 1: {
+                    matchResult = 1;
+                    break;
+                }
+                case 2: {
+                    matchResult = 2;
+                    break;
+                }
+                case 3: {
+                    matchResult = 3;
+                    break;
+                }
+                case 4: {
+                    matchResult = 4;
+                    break;
+                }
+                case 5: {
+                    matchResult = 5;
+                    break;
+                }
+                case 6: {
+                    matchResult = 6;
+                    break;
+                }
+                default:
+                    matchResult = 0;
+            }
+        }
+        switch (matchResult) {
+            case 0:
+                return "The source value must be a unique identifier for an organism or a sample.";
+            case 1:
+                return "The Sample Name column describes specifc laboratory samples with a unique identifier.";
+            case 2:
+                return "The Raw Data File column defines untransformed and unprocessed data files.";
+            case 3:
+                return "The Derived Data File column defines transformed and/or processed data files.";
+            case 4:
+                return "Placeholder";
+            case 5:
+                return "Placeholder";
+            case 6:
+                return "Placeholder";
+            default:
+                throw new Error(`Unable to parse combination to existing IOType: \`${iotype}\``);
+        }
+    }
 }
 
 export function IOType_$reflection() {
@@ -271,7 +429,7 @@ export class CompositeHeader extends Union {
     }
     get isOutput() {
         const this$ = this;
-        return this$.tag === 11;
+        return this$.tag === 12;
     }
     get isParameter() {
         const this$ = this;
@@ -334,6 +492,14 @@ export class CompositeHeader extends Union {
         const this$ = this;
         return this$.tag === 13;
     }
+    tryInput() {
+        const this$ = this;
+        return (this$.tag === 11) ? this$.fields[0] : void 0;
+    }
+    tryOutput() {
+        const this$ = this;
+        return (this$.tag === 12) ? this$.fields[0] : void 0;
+    }
     TryParameter() {
         const this$ = this;
         return (this$.tag === 3) ? ProtocolParameter_create_Z6C54B221(void 0, this$.fields[0]) : void 0;
@@ -350,6 +516,150 @@ export class CompositeHeader extends Union {
         const this$ = this;
         return (this$.tag === 0) ? Component_create_61502994(void 0, void 0, void 0, this$.fields[0]) : void 0;
     }
+    GetUITooltip() {
+        const this$ = this;
+        return CompositeHeader.getUITooltip(this$);
+    }
+    static getUITooltip(header) {
+        let matchResult;
+        if (typeof header === "string") {
+            if (equals(header, "Component")) {
+                matchResult = 0;
+            }
+            else if (equals(header, "Characteristic")) {
+                matchResult = 1;
+            }
+            else if (equals(header, "Factor")) {
+                matchResult = 2;
+            }
+            else if (equals(header, "Parameter")) {
+                matchResult = 3;
+            }
+            else if (equals(header, "ProtocolType")) {
+                matchResult = 4;
+            }
+            else if (equals(header, "ProtocolDescription")) {
+                matchResult = 5;
+            }
+            else if (equals(header, "ProtocolUri")) {
+                matchResult = 6;
+            }
+            else if (equals(header, "ProtocolVersion")) {
+                matchResult = 7;
+            }
+            else if (equals(header, "ProtocolREF")) {
+                matchResult = 8;
+            }
+            else if (equals(header, "Performer")) {
+                matchResult = 9;
+            }
+            else if (equals(header, "Date")) {
+                matchResult = 10;
+            }
+            else if (equals(header, "Input")) {
+                matchResult = 11;
+            }
+            else if (equals(header, "Output")) {
+                matchResult = 12;
+            }
+            else if (equals(header, "FreeText")) {
+                matchResult = 13;
+            }
+            else {
+                matchResult = 14;
+            }
+        }
+        else {
+            switch (header.tag) {
+                case 1: {
+                    matchResult = 1;
+                    break;
+                }
+                case 2: {
+                    matchResult = 2;
+                    break;
+                }
+                case 3: {
+                    matchResult = 3;
+                    break;
+                }
+                case 4: {
+                    matchResult = 4;
+                    break;
+                }
+                case 5: {
+                    matchResult = 5;
+                    break;
+                }
+                case 6: {
+                    matchResult = 6;
+                    break;
+                }
+                case 7: {
+                    matchResult = 7;
+                    break;
+                }
+                case 8: {
+                    matchResult = 8;
+                    break;
+                }
+                case 9: {
+                    matchResult = 9;
+                    break;
+                }
+                case 10: {
+                    matchResult = 10;
+                    break;
+                }
+                case 11: {
+                    matchResult = 11;
+                    break;
+                }
+                case 12: {
+                    matchResult = 12;
+                    break;
+                }
+                case 13: {
+                    matchResult = 13;
+                    break;
+                }
+                default:
+                    matchResult = 0;
+            }
+        }
+        switch (matchResult) {
+            case 0:
+                return "Component columns are used to describe physical components of a experiment, e.g. instrument names, software names, and reagents names.";
+            case 1:
+                return "Characteristic columns are used for study descriptions and describe inherent properties of the source material, e.g. a certain strain or organism part.";
+            case 2:
+                return "Use Factor columns to describe independent variables that result in a specific output of your experiment, e.g. the light intensity under which an organism was grown.";
+            case 3:
+                return "Parameter columns describe steps in your experimental workflow, e.g. the centrifugation time or the temperature used for your assay.";
+            case 4:
+                return "Defines the protocol type according to your preferred endpoint repository.";
+            case 5:
+                return "Describe the protocol in free text.";
+            case 6:
+                return "Web or local address where the in-depth protocol is stored.";
+            case 7:
+                return "Defines the protocol version.";
+            case 8:
+                return "Defines the protocol name.";
+            case 9:
+                return "Defines the protocol performer.";
+            case 10:
+                return "Defines the date the protocol was performed.";
+            case 11:
+                return "Only one input column per table. E.g. experimental samples or files.";
+            case 12:
+                return "Only one output column per table. E.g. experimental samples or files.";
+            case 13:
+                return "Placeholder";
+            default:
+                throw new Error(`Unable to parse combination to existing CompositeHeader: \`${header}\``);
+        }
+    }
 }
 
 export function CompositeHeader_$reflection() {

package/ISA/ISA/Helper.js

@@ -1,5 +1,6 @@
-import { isIterable, defaultOf, structuralHash, equals } from "../../fable_modules/fable-library.4.1.4/Util.js";
-import { value as value_1, some } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { some, value as value_1 } from "../../fable_modules/fable-library.4.1.4/Option.js";
+import { isIterable, defaultOf, structuralHash, equals, numberHash, identityHash } from "../../fable_modules/fable-library.4.1.4/Util.js";
+import { exactlyOne, partition, fold } from "../../fable_modules/fable-library.4.1.4/Array.js";
 import { empty, singleton, append, head, tail, isEmpty } from "../../fable_modules/fable-library.4.1.4/List.js";
 import { Dictionary } from "../../fable_modules/fable-library.4.1.4/MutableMap.js";
 import { isEmpty as isEmpty_1, iterate } from "../../fable_modules/fable-library.4.1.4/Seq.js";
@@ -7,7 +8,18 @@ import { tryGetValue, addToDict } from "../../fable_modules/fable-library.4.1.4/
 import { Union, toString, FSharpRef } from "../../fable_modules/fable-library.4.1.4/Types.js";
 import { append_generic, distinct_generic, isList_generic, isMap_generic } from "./Fable.js";
 import { union_type, makeUnion, option_type, makeGenericType, getUnionCases, name, obj_type } from "../../fable_modules/fable-library.4.1.4/Reflection.js";
-import { exactlyOne, partition } from "../../fable_modules/fable-library.4.1.4/Array.js";
+
+export function HashCodes_boxHashOption(a) {
+    let copyOfStruct, copyOfStruct_1;
+    return (a != null) ? ((copyOfStruct = value_1(a), identityHash(copyOfStruct))) : ((copyOfStruct_1 = 0, numberHash(copyOfStruct_1)));
+}
+
+export function HashCodes_boxHashArray(a) {
+    return fold((acc, o) => {
+        let copyOfStruct;
+        return ((-1640531527 + ((copyOfStruct = o, identityHash(copyOfStruct)))) + (acc << 6)) + (acc >> 2);
+    }, 0, a);
+}
 
 /**
  * If the value matches the default, a None is returned, else a Some is returned

package/ISA/ISA.Spreadsheet/AnnotationTable/ArcTable.js

@@ -1,4 +1,4 @@
-import { iterateIndexed, length, sortBy, collect, toArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { iterateIndexed, length, ofArray, sortBy, collect, toArray, empty, tail, head, isEmpty, cons, singleton, fold, map, reverse } from "../../../fable_modules/fable-library.4.1.4/List.js";
 import { tryParseReferenceColumnHeader } from "../../ISA/Regex.js";
 import { map as map_1, toList, tryFind } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
 import { toFsColumns, fixDeprecatedIOHeader, fromFsColumns } from "./CompositeColumn.js";
@@ -104,7 +104,7 @@ export function tryFromFsWorksheet(sheet) {
 export function toFsWorksheet(table) {
     const stringCount = new Map([]);
     const ws = new FsWorksheet(table.Name);
-    const columns = collect(toFsColumns, sortBy(classifyColumnOrder, table.Columns, {
+    const columns = collect(toFsColumns, sortBy(classifyColumnOrder, ofArray(table.Columns), {
         Compare: comparePrimitives,
     }));
     const maxRow = length(head(columns)) | 0;

package/Templates/Template.Json.js

@@ -11,6 +11,7 @@ import { Process_decoder, Process_encoder } from "../ISA/ISA.Json/Process.js";
 import { map as map_1, delay, toList } from "../fable_modules/fable-library.4.1.4/Seq.js";
 import { ArcTables_fromProcesses_134EBDED, ArcTables__get_Item_Z524259A4 } from "../ISA/ISA/ArcTypes/ArcTables.js";
 import { printf, toFail } from "../fable_modules/fable-library.4.1.4/String.js";
+import { FSharpMap__get_Values } from "../fable_modules/fable-library.4.1.4/Map.js";
 import { defaultArg } from "../fable_modules/fable-library.4.1.4/Option.js";
 
 export const Organisation_encode = toString;
@@ -69,7 +70,7 @@ export function Templates_fromJsonString(jsonString) {
         return toFail(printf("Error. Given json string cannot be parsed to Templates map: %A"))(matchValue.fields[0]);
     }
     else {
-        return matchValue.fields[0];
+        return Array.from(FSharpMap__get_Values(matchValue.fields[0]));
     }
 }
 

package/Templates/Template.Web.js

@@ -17,7 +17,7 @@ export class JsWeb {
     constructor() {
     }
     static getTemplates(url) {
-        return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(new Map(_arg)))));
+        return startAsPromise(singleton.Delay(() => singleton.Bind(getTemplates(url), (_arg) => singleton.Return(_arg))));
     }
 }