@nfdi4plants/arctrl 1.0.0-alpha10

package/ISA/ISA/ArcTypes/ArcTable.js

@@ -0,0 +1,848 @@
+import { Dictionary } from "../../../fable_modules/fable-library.4.1.4/MutableMap.js";
+import { compareArrays, safeHash, disposeSafe, getEnumerator, equals, comparePrimitives, arrayHash, equalArrays } from "../../../fable_modules/fable-library.4.1.4/Util.js";
+import { value as value_9, map as map_2, defaultArg, unwrap } from "../../../fable_modules/fable-library.4.1.4/Option.js";
+import { Unchecked_extendToRowCount, ProcessParsing_processToRows, ProcessParsing_alignByHeaders, ProcessParsing_mergeIdenticalProcesses, ProcessParsing_getProcessGetter, Unchecked_removeRowCells_withIndexChange, Unchecked_addRow, Unchecked_getEmptyCellForHeader, Unchecked_removeColumnCells_withIndexChange, tryFindDuplicateUniqueInArray, Unchecked_removeColumnCells, Unchecked_removeHeader, Unchecked_fillMissingCells, Unchecked_addColumn, tryFindDuplicateUnique, Unchecked_setCellAt, SanityChecks_validateColumn, SanityChecks_validateRowIndex, SanityChecks_validateColumnIndex, Unchecked_tryGetCellAt, getRowCount, getColumnCount } from "./ArcTableAux.js";
+import { item, append as append_1, indexed as indexed_1, choose, toList, zip, fold, filter, length, tryFindIndex, empty, singleton, collect, removeAt, map, delay, toArray } from "../../../fable_modules/fable-library.4.1.4/Seq.js";
+import { rangeDouble } from "../../../fable_modules/fable-library.4.1.4/Range.js";
+import { CompositeColumn } from "./CompositeColumn.js";
+import { sortBy, indexed, mapIndexed, singleton as singleton_1, initialize, sortDescending, iterateIndexed, map as map_1 } from "../../../fable_modules/fable-library.4.1.4/Array.js";
+import { append, collect as collect_1, initialize as initialize_1, singleton as singleton_2, empty as empty_1, iterate, isEmpty } from "../../../fable_modules/fable-library.4.1.4/List.js";
+import { StringBuilder__AppendLine_Z721C83C5, StringBuilder_$ctor } from "../../../fable_modules/fable-library.4.1.4/System.Text.js";
+import { toString } from "../../../fable_modules/fable-library.4.1.4/Types.js";
+import { join, printf, toFail } from "../../../fable_modules/fable-library.4.1.4/String.js";
+import { CompositeCell } from "./CompositeCell.js";
+import { CompositeHeader } from "./CompositeHeader.js";
+import { createMissingIdentifier } from "../Identifier.js";
+import { ARCtrl_ISA_Component__Component_TryGetColumnIndex, ARCtrl_ISA_ProtocolParameter__ProtocolParameter_TryGetColumnIndex } from "../JsonTypes/ColumnIndex.js";
+import { Protocol_create_Z7DFD6E67, Protocol_addComponent, Protocol_addParameter, Protocol_setName, Protocol_setDescription, Protocol_setUri, Protocol_setVersion, Protocol_setProtocolType } from "../JsonTypes/Protocol.js";
+import { OntologyAnnotation } from "../JsonTypes/OntologyAnnotation.js";
+import { ProtocolParameter_create_Z6C54B221 } from "../JsonTypes/ProtocolParameter.js";
+import { Component_create_61502994 } from "../JsonTypes/Component.js";
+import { Array_groupBy, List_distinct } from "../../../fable_modules/fable-library.4.1.4/Seq2.js";
+import { toProtocol } from "./CompositeRow.js";
+import { Process_create_Z42860F3E } from "../JsonTypes/Process.js";
+import { getItemFromDict } from "../../../fable_modules/fable-library.4.1.4/MapUtil.js";
+import { HashCodes_boxHashArray } from "../Helper.js";
+import { class_type } from "../../../fable_modules/fable-library.4.1.4/Reflection.js";
+
+export class ArcTable {
+    constructor(name, headers, values) {
+        this._name = name;
+        this["Headers@"] = headers;
+        this["Values@"] = values;
+    }
+    get Headers() {
+        const __ = this;
+        return __["Headers@"];
+    }
+    set Headers(v) {
+        const __ = this;
+        __["Headers@"] = v;
+    }
+    get Values() {
+        const __ = this;
+        return __["Values@"];
+    }
+    set Values(v) {
+        const __ = this;
+        __["Values@"] = v;
+    }
+    get Name() {
+        const this$ = this;
+        return this$._name;
+    }
+    set Name(newName) {
+        const this$ = this;
+        this$._name = newName;
+    }
+    static create(name, headers, values) {
+        return new ArcTable(name, headers, values);
+    }
+    static init(name) {
+        return new ArcTable(name, [], new Dictionary([], {
+            Equals: equalArrays,
+            GetHashCode: arrayHash,
+        }));
+    }
+    static createFromHeaders(name, headers) {
+        return ArcTable.create(name, headers, new Dictionary([], {
+            Equals: equalArrays,
+            GetHashCode: arrayHash,
+        }));
+    }
+    static createFromRows(name, headers, rows) {
+        const t = ArcTable.createFromHeaders(name, headers);
+        t.AddRows(rows);
+        return t;
+    }
+    Validate(raiseException) {
+        const this$ = this;
+        let isValid = true;
+        for (let columnIndex = 0; columnIndex <= (this$.ColumnCount - 1); columnIndex++) {
+            const column = this$.GetColumn(columnIndex);
+            isValid = column.Validate(unwrap(raiseException));
+        }
+        return isValid;
+    }
+    static validate(raiseException) {
+        return (table) => table.Validate(unwrap(raiseException));
+    }
+    get ColumnCount() {
+        const this$ = this;
+        return getColumnCount(this$.Headers) | 0;
+    }
+    get RowCount() {
+        const this$ = this;
+        return getRowCount(this$.Values) | 0;
+    }
+    get Columns() {
+        const this$ = this;
+        return toArray(delay(() => map((i) => this$.GetColumn(i), rangeDouble(0, 1, this$.ColumnCount - 1))));
+    }
+    Copy() {
+        const this$ = this;
+        return ArcTable.create(this$.Name, Array.from(this$.Headers), new Dictionary(this$.Values, {
+            Equals: equalArrays,
+            GetHashCode: arrayHash,
+        }));
+    }
+    TryGetCellAt(column, row) {
+        const this$ = this;
+        return Unchecked_tryGetCellAt(column, row, this$.Values);
+    }
+    static tryGetCellAt(column, row) {
+        return (table) => table.TryGetCellAt(column, row);
+    }
+    UpdateCellAt(columnIndex, rowIndex, c) {
+        const this$ = this;
+        SanityChecks_validateColumnIndex(columnIndex, this$.ColumnCount, false);
+        SanityChecks_validateRowIndex(rowIndex, this$.RowCount, false);
+        SanityChecks_validateColumn(CompositeColumn.create(this$.Headers[columnIndex], [c]));
+        Unchecked_setCellAt(columnIndex, rowIndex, c, this$.Values);
+    }
+    static updateCellAt(columnIndex, rowIndex, cell) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.UpdateCellAt(columnIndex, rowIndex, cell);
+            return newTable;
+        };
+    }
+    UpdateHeader(index, newHeader, forceConvertCells) {
+        const this$ = this;
+        const forceConvertCells_1 = defaultArg(forceConvertCells, false);
+        SanityChecks_validateColumnIndex(index, this$.ColumnCount, false);
+        const header = newHeader;
+        const matchValue = tryFindDuplicateUnique(header, removeAt(index, this$.Headers));
+        if (matchValue != null) {
+            throw new Error(`Invalid input. Tried setting unique header \`${header}\`, but header of same type already exists at index ${matchValue}.`);
+        }
+        const c = new CompositeColumn(newHeader, this$.GetColumn(index).Cells);
+        if (c.Validate()) {
+            let setHeader;
+            setHeader = (this$.Headers[index] = newHeader);
+        }
+        else if (forceConvertCells_1) {
+            const convertedCells = newHeader.IsTermColumn ? map_1((c_1) => {
+                if (c_1.isFreeText) {
+                    return c_1.ToTermCell();
+                }
+                else {
+                    return c_1;
+                }
+            }, c.Cells) : map_1((c_2) => c_2.ToFreeTextCell(), c.Cells);
+            this$.UpdateColumn(index, newHeader, convertedCells);
+        }
+        else {
+            throw new Error("Tried setting header for column with invalid type of cells. Set `forceConvertCells` flag to automatically convert cells into valid CompositeCell type.");
+        }
+    }
+    static updateHeader(index, header) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.UpdateHeader(index, header);
+            return newTable;
+        };
+    }
+    AddColumn(header, cells, index, forceReplace) {
+        const this$ = this;
+        const index_1 = defaultArg(index, this$.ColumnCount) | 0;
+        const cells_1 = defaultArg(cells, []);
+        const forceReplace_1 = defaultArg(forceReplace, false);
+        SanityChecks_validateColumnIndex(index_1, this$.ColumnCount, true);
+        SanityChecks_validateColumn(CompositeColumn.create(header, cells_1));
+        Unchecked_addColumn(header, cells_1, index_1, forceReplace_1, false, this$.Headers, this$.Values);
+        Unchecked_fillMissingCells(this$.Headers, this$.Values);
+    }
+    static addColumn(header, cells, index, forceReplace) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AddColumn(header, unwrap(cells), unwrap(index), unwrap(forceReplace));
+            return newTable;
+        };
+    }
+    UpdateColumn(columnIndex, header, cells) {
+        const this$ = this;
+        SanityChecks_validateColumnIndex(columnIndex, this$.ColumnCount, false);
+        const column = CompositeColumn.create(header, unwrap(cells));
+        SanityChecks_validateColumn(column);
+        const header_1 = column.Header;
+        const matchValue = tryFindDuplicateUnique(header_1, removeAt(columnIndex, this$.Headers));
+        if (matchValue != null) {
+            throw new Error(`Invalid input. Tried setting unique header \`${header_1}\`, but header of same type already exists at index ${matchValue}.`);
+        }
+        Unchecked_removeHeader(columnIndex, this$.Headers);
+        Unchecked_removeColumnCells(columnIndex, this$.Values);
+        this$.Headers.splice(columnIndex, 0, column.Header);
+        iterateIndexed((rowIndex, v) => {
+            Unchecked_setCellAt(columnIndex, rowIndex, v, this$.Values);
+        }, column.Cells);
+        Unchecked_fillMissingCells(this$.Headers, this$.Values);
+    }
+    static updateColumn(columnIndex, header, cells) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.UpdateColumn(columnIndex, header, unwrap(cells));
+            return newTable;
+        };
+    }
+    InsertColumn(index, header, cells) {
+        const this$ = this;
+        this$.AddColumn(header, unwrap(cells), index, false);
+    }
+    static insertColumn(index, header, cells) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.InsertColumn(index, header, unwrap(cells));
+            return newTable;
+        };
+    }
+    AppendColumn(header, cells) {
+        const this$ = this;
+        this$.AddColumn(header, unwrap(cells), this$.ColumnCount, false);
+    }
+    static appendColumn(header, cells) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AppendColumn(header, unwrap(cells));
+            return newTable;
+        };
+    }
+    AddColumns(columns, index, forceReplace) {
+        const this$ = this;
+        let index_1 = defaultArg(index, this$.ColumnCount);
+        const forceReplace_1 = defaultArg(forceReplace, false);
+        SanityChecks_validateColumnIndex(index_1, this$.ColumnCount, true);
+        const duplicates = tryFindDuplicateUniqueInArray(map((x) => x.Header, columns));
+        if (!isEmpty(duplicates)) {
+            const sb = StringBuilder_$ctor();
+            StringBuilder__AppendLine_Z721C83C5(sb, "Found duplicate unique columns in `columns`.");
+            iterate((x_1) => {
+                StringBuilder__AppendLine_Z721C83C5(sb, `Duplicate \`${x_1.HeaderType}\` at index ${x_1.Index1} and ${x_1.Index2}.`);
+            }, duplicates);
+            throw new Error(toString(sb));
+        }
+        columns.forEach((x_2) => {
+            SanityChecks_validateColumn(x_2);
+        });
+        columns.forEach((col) => {
+            const prevHeadersCount = this$.Headers.length | 0;
+            Unchecked_addColumn(col.Header, col.Cells, index_1, forceReplace_1, false, this$.Headers, this$.Values);
+            if (this$.Headers.length > prevHeadersCount) {
+                index_1 = ((index_1 + 1) | 0);
+            }
+        });
+        Unchecked_fillMissingCells(this$.Headers, this$.Values);
+    }
+    static addColumns(columns, index) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AddColumns(columns, index);
+            return newTable;
+        };
+    }
+    RemoveColumn(index) {
+        const this$ = this;
+        SanityChecks_validateColumnIndex(index, this$.ColumnCount, false);
+        const columnCount = this$.ColumnCount | 0;
+        Unchecked_removeHeader(index, this$.Headers);
+        Unchecked_removeColumnCells_withIndexChange(index, columnCount, this$.RowCount, this$.Values);
+    }
+    static removeColumn(index) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.RemoveColumn(index);
+            return newTable;
+        };
+    }
+    RemoveColumns(indexArr) {
+        const this$ = this;
+        indexArr.forEach((index) => {
+            SanityChecks_validateColumnIndex(index, this$.ColumnCount, false);
+        });
+        const indexArr_1 = sortDescending(indexArr, {
+            Compare: comparePrimitives,
+        });
+        indexArr_1.forEach((index_1) => {
+            this$.RemoveColumn(index_1);
+        });
+    }
+    static removeColumns(indexArr) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.RemoveColumns(indexArr);
+            return newTable;
+        };
+    }
+    GetColumn(columnIndex) {
+        const this$ = this;
+        SanityChecks_validateColumnIndex(columnIndex, this$.ColumnCount, false);
+        const h = this$.Headers[columnIndex];
+        const cells = toArray(delay(() => collect((i) => {
+            const matchValue = this$.TryGetCellAt(columnIndex, i);
+            if (matchValue != null) {
+                return singleton(matchValue);
+            }
+            else {
+                toFail(printf("Unable to find cell for index: (%i, %i)"))(columnIndex)(i);
+                return empty();
+            }
+        }, rangeDouble(0, 1, this$.RowCount - 1))));
+        return CompositeColumn.create(h, cells);
+    }
+    static getColumn(index) {
+        return (table) => table.GetColumn(index);
+    }
+    TryGetColumnByHeader(header) {
+        const this$ = this;
+        return map_2((i) => this$.GetColumn(i), tryFindIndex((x) => equals(x, header), this$.Headers));
+    }
+    static tryGetColumnByHeader(header) {
+        return (table) => table.TryGetColumnByHeader(header);
+    }
+    GetColumnByHeader(header) {
+        const this$ = this;
+        const matchValue = this$.TryGetColumnByHeader(header);
+        if (matchValue == null) {
+            const arg = this$.Name;
+            return toFail(printf("Unable to find column with header in table %s: %O"))(arg)(header);
+        }
+        else {
+            return matchValue;
+        }
+    }
+    static getColumnByHeader(header) {
+        return (table) => table.GetColumnByHeader(header);
+    }
+    TryGetInputColumn() {
+        const this$ = this;
+        return map_2((i) => this$.GetColumn(i), tryFindIndex((x) => x.isInput, this$.Headers));
+    }
+    static tryGetInputColumn() {
+        return (table) => table.TryGetInputColumn();
+    }
+    GetInputColumn() {
+        const this$ = this;
+        const matchValue = this$.TryGetInputColumn();
+        if (matchValue == null) {
+            const arg = this$.Name;
+            return toFail(printf("Unable to find input column in table %s"))(arg);
+        }
+        else {
+            return matchValue;
+        }
+    }
+    static getInputColumn() {
+        return (table) => table.GetInputColumn();
+    }
+    TryGetOutputColumn() {
+        const this$ = this;
+        return map_2((i) => this$.GetColumn(i), tryFindIndex((x) => x.isOutput, this$.Headers));
+    }
+    static tryGetOutputColumn() {
+        return (table) => table.TryGetOutputColumn();
+    }
+    GetOutputColumn() {
+        const this$ = this;
+        const matchValue = this$.TryGetOutputColumn();
+        if (matchValue == null) {
+            const arg = this$.Name;
+            return toFail(printf("Unable to find output column in table %s"))(arg);
+        }
+        else {
+            return matchValue;
+        }
+    }
+    static getOutputColumn() {
+        return (table) => table.GetOutputColumn();
+    }
+    AddRow(cells, index) {
+        const this$ = this;
+        const index_1 = defaultArg(index, this$.RowCount) | 0;
+        const cells_1 = (cells == null) ? toArray(delay(() => collect((columnIndex) => singleton(Unchecked_getEmptyCellForHeader(this$.Headers[columnIndex], Unchecked_tryGetCellAt(columnIndex, 0, this$.Values))), rangeDouble(0, 1, this$.ColumnCount - 1)))) : value_9(cells);
+        SanityChecks_validateRowIndex(index_1, this$.RowCount, true);
+        const columnCount = this$.ColumnCount | 0;
+        const newCellsCount = length(cells_1) | 0;
+        if (columnCount === 0) {
+            throw new Error("Table contains no columns! Cannot add row to empty table!");
+        }
+        else if (newCellsCount !== columnCount) {
+            throw new Error(`Cannot add a new row with ${newCellsCount} cells, as the table has ${columnCount} columns.`);
+        }
+        for (let columnIndex_1 = 0; columnIndex_1 <= (this$.ColumnCount - 1); columnIndex_1++) {
+            const h_1 = this$.Headers[columnIndex_1];
+            SanityChecks_validateColumn(CompositeColumn.create(h_1, [cells_1[columnIndex_1]]));
+        }
+        Unchecked_addRow(index_1, cells_1, this$.Headers, this$.Values);
+    }
+    static addRow(cells, index) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AddRow(unwrap(cells), unwrap(index));
+            return newTable;
+        };
+    }
+    UpdateRow(rowIndex, cells) {
+        const this$ = this;
+        SanityChecks_validateRowIndex(rowIndex, this$.RowCount, false);
+        const columnCount = this$.RowCount | 0;
+        const newCellsCount = length(cells) | 0;
+        if (columnCount === 0) {
+            throw new Error("Table contains no columns! Cannot add row to empty table!");
+        }
+        else if (newCellsCount !== columnCount) {
+            throw new Error(`Cannot add a new row with ${newCellsCount} cells, as the table has ${columnCount} columns.`);
+        }
+        iterateIndexed((i, cell) => {
+            const h = this$.Headers[i];
+            SanityChecks_validateColumn(CompositeColumn.create(h, [cell]));
+        }, cells);
+        iterateIndexed((columnIndex, cell_1) => {
+            Unchecked_setCellAt(columnIndex, rowIndex, cell_1, this$.Values);
+        }, cells);
+    }
+    static updateRow(rowIndex, cells) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.UpdateRow(rowIndex, cells);
+            return newTable;
+        };
+    }
+    AppendRow(cells) {
+        const this$ = this;
+        this$.AddRow(unwrap(cells), this$.RowCount);
+    }
+    static appendRow(cells) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AppendRow(unwrap(cells));
+            return newTable;
+        };
+    }
+    InsertRow(index, cells) {
+        const this$ = this;
+        this$.AddRow(unwrap(cells), index);
+    }
+    static insertRow(index, cells) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AddRow(unwrap(cells), index);
+            return newTable;
+        };
+    }
+    AddRows(rows, index) {
+        const this$ = this;
+        let index_1 = defaultArg(index, this$.RowCount);
+        SanityChecks_validateRowIndex(index_1, this$.RowCount, true);
+        rows.forEach((row) => {
+            const columnCount = this$.ColumnCount | 0;
+            const newCellsCount = length(row) | 0;
+            if (columnCount === 0) {
+                throw new Error("Table contains no columns! Cannot add row to empty table!");
+            }
+            else if (newCellsCount !== columnCount) {
+                throw new Error(`Cannot add a new row with ${newCellsCount} cells, as the table has ${columnCount} columns.`);
+            }
+        });
+        for (let idx = 0; idx <= (rows.length - 1); idx++) {
+            const row_1 = rows[idx];
+            for (let columnIndex = 0; columnIndex <= (this$.ColumnCount - 1); columnIndex++) {
+                const h = this$.Headers[columnIndex];
+                SanityChecks_validateColumn(CompositeColumn.create(h, [row_1[columnIndex]]));
+            }
+        }
+        rows.forEach((row_2) => {
+            Unchecked_addRow(index_1, row_2, this$.Headers, this$.Values);
+            index_1 = ((index_1 + 1) | 0);
+        });
+    }
+    static addRows(rows, index) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AddRows(rows, unwrap(index));
+            return newTable;
+        };
+    }
+    AddRowsEmpty(rowCount, index) {
+        const this$ = this;
+        const row = toArray(delay(() => collect((columnIndex) => singleton(Unchecked_getEmptyCellForHeader(this$.Headers[columnIndex], Unchecked_tryGetCellAt(columnIndex, 0, this$.Values))), rangeDouble(0, 1, this$.ColumnCount - 1))));
+        const rows = initialize(rowCount, (_arg) => row);
+        this$.AddRows(rows, unwrap(index));
+    }
+    static addRowsEmpty(rowCount, index) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.AddRowsEmpty(rowCount, unwrap(index));
+            return newTable;
+        };
+    }
+    RemoveRow(index) {
+        const this$ = this;
+        SanityChecks_validateRowIndex(index, this$.RowCount, false);
+        const removeCells = Unchecked_removeRowCells_withIndexChange(index, this$.ColumnCount, this$.RowCount, this$.Values);
+    }
+    static removeRow(index) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.RemoveRow(index);
+            return newTable;
+        };
+    }
+    RemoveRows(indexArr) {
+        const this$ = this;
+        indexArr.forEach((index) => {
+            SanityChecks_validateRowIndex(index, this$.RowCount, false);
+        });
+        const indexArr_1 = sortDescending(indexArr, {
+            Compare: comparePrimitives,
+        });
+        indexArr_1.forEach((index_1) => {
+            this$.RemoveRow(index_1);
+        });
+    }
+    static removeRows(indexArr) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.RemoveColumns(indexArr);
+            return newTable;
+        };
+    }
+    GetRow(rowIndex) {
+        const this$ = this;
+        SanityChecks_validateRowIndex(rowIndex, this$.RowCount, false);
+        return toArray(delay(() => map((columnIndex) => value_9(this$.TryGetCellAt(columnIndex, rowIndex)), rangeDouble(0, 1, this$.ColumnCount - 1))));
+    }
+    static getRow(index) {
+        return (table) => table.GetRow(index);
+    }
+    Join(table, joinOptions, forceReplace) {
+        const this$ = this;
+        const joinOptions_1 = defaultArg(joinOptions, "headers");
+        const forceReplace_1 = defaultArg(forceReplace, false);
+        const onlyHeaders = joinOptions_1 === "headers";
+        let columns;
+        const pre = table.Columns;
+        columns = ((joinOptions_1 === "withUnit") ? map_1((c_1) => {
+            const unitsOpt = c_1.TryGetColumnUnits();
+            if (unitsOpt == null) {
+                return new CompositeColumn(c_1.Header, []);
+            }
+            else {
+                return new CompositeColumn(c_1.Header, map_1((u) => CompositeCell.createUnitized("", u), unitsOpt));
+            }
+        }, pre) : ((joinOptions_1 === "withValues") ? pre : map_1((c) => (new CompositeColumn(c.Header, [])), pre)));
+        const duplicates = tryFindDuplicateUniqueInArray(map((x) => x.Header, columns));
+        if (!isEmpty(duplicates)) {
+            const sb = StringBuilder_$ctor();
+            StringBuilder__AppendLine_Z721C83C5(sb, "Found duplicate unique columns in `columns`.");
+            iterate((x_1) => {
+                StringBuilder__AppendLine_Z721C83C5(sb, `Duplicate \`${x_1.HeaderType}\` at index ${x_1.Index1} and ${x_1.Index2}.`);
+            }, duplicates);
+            throw new Error(toString(sb));
+        }
+        columns.forEach((x_2) => {
+            SanityChecks_validateColumn(x_2);
+        });
+        let index = this$.ColumnCount;
+        columns.forEach((col) => {
+            const prevHeadersCount = this$.Headers.length | 0;
+            Unchecked_addColumn(col.Header, col.Cells, index, forceReplace_1, onlyHeaders, this$.Headers, this$.Values);
+            if (this$.Headers.length > prevHeadersCount) {
+                index = ((index + 1) | 0);
+            }
+        });
+        Unchecked_fillMissingCells(this$.Headers, this$.Values);
+    }
+    static join(table, joinOptions, forceReplace) {
+        return (this$) => {
+            const copy = this$.Copy();
+            copy.Join(table, unwrap(joinOptions), unwrap(forceReplace));
+            return copy;
+        };
+    }
+    static insertParameterValue(t, p) {
+        throw new Error();
+    }
+    static getParameterValues(t) {
+        throw new Error();
+    }
+    AddProtocolTypeColumn(types, index) {
+        const this$ = this;
+        const cells = map_2((array) => map_1((arg) => (new CompositeCell(0, [arg])), array), types);
+        this$.AddColumn(new CompositeHeader(4, []), cells, index);
+    }
+    AddProtocolVersionColumn(versions, index) {
+        const this$ = this;
+        const cells = map_2((array) => map_1((arg) => (new CompositeCell(1, [arg])), array), versions);
+        this$.AddColumn(new CompositeHeader(7, []), cells, index);
+    }
+    AddProtocolUriColumn(uris, index) {
+        const this$ = this;
+        const cells = map_2((array) => map_1((arg) => (new CompositeCell(1, [arg])), array), uris);
+        this$.AddColumn(new CompositeHeader(6, []), cells, index);
+    }
+    AddProtocolDescriptionColumn(descriptions, index) {
+        const this$ = this;
+        const cells = map_2((array) => map_1((arg) => (new CompositeCell(1, [arg])), array), descriptions);
+        this$.AddColumn(new CompositeHeader(5, []), cells, index);
+    }
+    AddProtocolNameColumn(names, index) {
+        const this$ = this;
+        const cells = map_2((array) => map_1((arg) => (new CompositeCell(1, [arg])), array), names);
+        this$.AddColumn(new CompositeHeader(8, []), cells, index);
+    }
+    GetProtocolTypeColumn() {
+        const this$ = this;
+        return this$.GetColumnByHeader(new CompositeHeader(4, []));
+    }
+    GetProtocolVersionColumn() {
+        const this$ = this;
+        return this$.GetColumnByHeader(new CompositeHeader(7, []));
+    }
+    GetProtocolUriColumn() {
+        const this$ = this;
+        return this$.GetColumnByHeader(new CompositeHeader(6, []));
+    }
+    GetProtocolDescriptionColumn() {
+        const this$ = this;
+        return this$.GetColumnByHeader(new CompositeHeader(5, []));
+    }
+    GetProtocolNameColumn() {
+        const this$ = this;
+        return this$.GetColumnByHeader(new CompositeHeader(8, []));
+    }
+    TryGetProtocolNameColumn() {
+        const this$ = this;
+        return this$.TryGetColumnByHeader(new CompositeHeader(8, []));
+    }
+    GetComponentColumns() {
+        const this$ = this;
+        return map_1((h_1) => this$.GetColumnByHeader(h_1), toArray(filter((h) => h.isComponent, this$.Headers)));
+    }
+    static fromProtocol(p) {
+        const t = ArcTable.init(defaultArg(p.Name, createMissingIdentifier()));
+        const enumerator = getEnumerator(defaultArg(p.Parameters, empty_1()));
+        try {
+            while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+                const pp = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                t.AddColumn(new CompositeHeader(3, [value_9(pp.ParameterName)]), void 0, ARCtrl_ISA_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(pp));
+            }
+        }
+        finally {
+            disposeSafe(enumerator);
+        }
+        const enumerator_1 = getEnumerator(defaultArg(p.Components, empty_1()));
+        try {
+            while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
+                const c = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
+                const v_1 = map_2((arg) => singleton_1(CompositeCell.fromValue(arg, unwrap(c.ComponentUnit))), c.ComponentValue);
+                t.AddColumn(new CompositeHeader(3, [value_9(c.ComponentType)]), v_1, ARCtrl_ISA_Component__Component_TryGetColumnIndex(c));
+            }
+        }
+        finally {
+            disposeSafe(enumerator_1);
+        }
+        map_2((d) => {
+            t.AddProtocolDescriptionColumn([d]);
+        }, p.Description);
+        map_2((d_1) => {
+            t.AddProtocolVersionColumn([d_1]);
+        }, p.Version);
+        map_2((d_2) => {
+            t.AddProtocolTypeColumn([d_2]);
+        }, p.ProtocolType);
+        map_2((d_3) => {
+            t.AddProtocolUriColumn([d_3]);
+        }, p.Uri);
+        map_2((d_4) => {
+            t.AddProtocolNameColumn([d_4]);
+        }, p.Name);
+        return t;
+    }
+    GetProtocols() {
+        let source;
+        const this$ = this;
+        return (this$.RowCount === 0) ? singleton_2((source = this$.Headers, fold((p, h) => {
+            switch (h.tag) {
+                case 4:
+                    return Protocol_setProtocolType(p, OntologyAnnotation.empty);
+                case 7:
+                    return Protocol_setVersion(p, "");
+                case 6:
+                    return Protocol_setUri(p, "");
+                case 5:
+                    return Protocol_setDescription(p, "");
+                case 8:
+                    return Protocol_setName(p, "");
+                case 3:
+                    return Protocol_addParameter(ProtocolParameter_create_Z6C54B221(void 0, h.fields[0]), p);
+                case 0:
+                    return Protocol_addComponent(Component_create_61502994(void 0, void 0, void 0, h.fields[0]), p);
+                default:
+                    return p;
+            }
+        }, Protocol_create_Z7DFD6E67(void 0, this$.Name), source))) : List_distinct(initialize_1(this$.RowCount, (i) => {
+            let row;
+            const source_2 = this$.GetRow(i);
+            row = zip(this$.Headers, source_2);
+            return toProtocol(this$.Name, row);
+        }), {
+            Equals: equals,
+            GetHashCode: safeHash,
+        });
+    }
+    GetProcesses() {
+        const this$ = this;
+        if (this$.RowCount === 0) {
+            return singleton_2(Process_create_Z42860F3E(void 0, this$.Name));
+        }
+        else {
+            let getter;
+            const clo = ProcessParsing_getProcessGetter(this$.Name, this$.Headers);
+            getter = ((arg) => {
+                const clo_1 = clo(arg);
+                return clo_1;
+            });
+            return ProcessParsing_mergeIdenticalProcesses(toList(delay(() => map((i) => getter(this$.Values)(i), rangeDouble(0, 1, this$.RowCount - 1)))));
+        }
+    }
+    static fromProcesses(name, ps) {
+        const tupledArg = ProcessParsing_alignByHeaders(true, collect_1(ProcessParsing_processToRows, ps));
+        return ArcTable.create(name, tupledArg[0], tupledArg[1]);
+    }
+    static SplitByColumnValues(columnIndex) {
+        return (table) => mapIndexed((i, indexGroup) => {
+            let headers;
+            const arg = table.Headers;
+            headers = Array.from(arg);
+            const rows = map_1((i_1) => table.GetRow(i_1), indexGroup);
+            return ArcTable.createFromRows(table.Name, headers, rows);
+        }, map_1((tupledArg) => map_1((tuple_1) => tuple_1[0], tupledArg[1], Int32Array), Array_groupBy((tuple) => tuple[1], indexed(table.GetColumn(columnIndex).Cells), {
+            Equals: equals,
+            GetHashCode: safeHash,
+        })));
+    }
+    static SplitByColumnValuesByHeader(header) {
+        return (table) => {
+            const index = tryFindIndex((x) => equals(x, header), table.Headers);
+            if (index == null) {
+                return [table.Copy()];
+            }
+            else {
+                const i = index | 0;
+                return ArcTable.SplitByColumnValues(i)(table);
+            }
+        };
+    }
+    static get SplitByProtocolREF() {
+        return (table) => ArcTable.SplitByColumnValuesByHeader(new CompositeHeader(8, []))(table);
+    }
+    static updateReferenceByAnnotationTable(refTable, annotationTable) {
+        const refTable_1 = refTable.Copy();
+        const annotationTable_1 = annotationTable.Copy();
+        const nonProtocolColumns = toArray(choose((tupledArg) => {
+            if (tupledArg[1].isProtocolColumn) {
+                return void 0;
+            }
+            else {
+                return tupledArg[0];
+            }
+        }, indexed_1(refTable_1.Headers)));
+        refTable_1.RemoveColumns(nonProtocolColumns);
+        Unchecked_extendToRowCount(annotationTable_1.RowCount, refTable_1.Headers, refTable_1.Values);
+        const arr = annotationTable_1.Columns;
+        for (let idx = 0; idx <= (arr.length - 1); idx++) {
+            const c = arr[idx];
+            refTable_1.AddColumn(c.Header, c.Cells, void 0, true);
+        }
+        return refTable_1;
+    }
+    static append(table1, table2) {
+        const getList = (t) => toList(delay(() => map((row) => toList(delay(() => map((col) => [t.Headers[col], getItemFromDict(t.Values, [col, row])], rangeDouble(0, 1, t.ColumnCount - 1)))), rangeDouble(0, 1, t.RowCount - 1))));
+        const patternInput = ProcessParsing_alignByHeaders(false, append(getList(table1), getList(table2)));
+        return ArcTable.create(table1.Name, patternInput[0], patternInput[1]);
+    }
+    toString() {
+        const this$ = this;
+        return join("\n", toList(delay(() => append_1(singleton(`Table: ${this$.Name}`), delay(() => append_1(singleton("-------------"), delay(() => append_1(singleton(join("\t|\t", map(toString, this$.Headers))), delay(() => map((rowI) => join("\t|\t", map(toString, this$.GetRow(rowI))), rangeDouble(0, 1, this$.RowCount - 1)))))))))));
+    }
+    StructurallyEquals(other) {
+        let a, b;
+        const this$ = this;
+        const sort = (arg) => sortBy((_arg) => _arg[0], Array.from(arg), {
+            Compare: compareArrays,
+        });
+        if ((this$.Name === other.Name) && ((a = this$.Headers, (b = other.Headers, (length(a) === length(b)) && fold((acc, e) => {
+            if (acc) {
+                return e;
+            }
+            else {
+                return false;
+            }
+        }, true, toList(delay(() => map((i) => equals(item(i, a), item(i, b)), rangeDouble(0, 1, length(a) - 1))))))))) {
+            const a_1 = sort(this$.Values);
+            const b_1 = sort(other.Values);
+            return (length(a_1) === length(b_1)) && fold((acc_1, e_1) => {
+                if (acc_1) {
+                    return e_1;
+                }
+                else {
+                    return false;
+                }
+            }, true, toList(delay(() => map((i_1) => equals(item(i_1, a_1), item(i_1, b_1)), rangeDouble(0, 1, length(a_1) - 1)))));
+        }
+        else {
+            return false;
+        }
+    }
+    ReferenceEquals(other) {
+        const this$ = this;
+        return this$ === other;
+    }
+    Equals(other) {
+        let table;
+        const this$ = this;
+        return (other instanceof ArcTable) && ((table = other, this$.StructurallyEquals(table)));
+    }
+    GetHashCode() {
+        const this$ = this;
+        const v_2 = map_1((tupledArg) => {
+            const _arg = tupledArg[0];
+            return HashCodes_boxHashArray([_arg[0], _arg[1], tupledArg[1]]);
+        }, sortBy((tuple) => tuple[0], toArray(delay(() => collect((matchValue) => {
+            const activePatternResult = matchValue;
+            return singleton([activePatternResult[0], activePatternResult[1]]);
+        }, this$.Values))), {
+            Compare: compareArrays,
+        }));
+        return HashCodes_boxHashArray([this$.Name, HashCodes_boxHashArray(Array.from(this$.Headers)), HashCodes_boxHashArray(Array.from(v_2))]) | 0;
+    }
+}
+
+export function ArcTable_$reflection() {
+    return class_type("ARCtrl.ISA.ArcTable", void 0, ArcTable);
+}
+
+export function ArcTable_$ctor_474CDC4E(name, headers, values) {
+    return new ArcTable(name, headers, values);
+}
+