@nexus-cortex/core 4.93.0 → 4.94.0

package/{.env.example → .env.defaults}

@@ -1,24 +1,36 @@
+# GENERATED — DO NOT EDIT. Read-live, shipped mirror of the MASTER config `.env`.
+# Edit `.env` (the master); regenerate with `npm run sync:env` (runs on build).
+# Read as the lowest-precedence default layer: user ~/.cortex/.env > real env > this.
+
 # Nexus Cortex — Complete Environment Configuration Reference
 # ╔══════════════════════════════════════════════════════════════════════════════════╗
 # ║ LEVER LEDGER — this file is the persistent record of where every config lever      ║
 # ║ stands. Each lever carries a "# [LEDGER <date> @<version>] STATUS — evidence"      ║
 # ║ line (ON | DARK/RETIRED | DARK/PENDING | DARK by design). Update the line when a   ║
 # ║ cell moves the verdict and when each iteration ships. Cell ledgers live in        ║
-# ║ .cortex/bench/r-*.md. K=5 CONFIG (settled 2026-09-03 @4.90.1, r-v4-validation):    ║
-# ║ ON set + CORTEX_ENDTURN_GATE=true + CORTEX_ENDTURN_REQUIREMENTS=strict +           ║
+# ║ .cortex/bench/r-*.md. K=5 CONFIG (verified 2026-09-06 @4.93.0, r-resolver-k5):     ║
+# ║ ON set + CORTEX_ENDTURN_GATE=true + CORTEX_ENDTURN_REQUIREMENTS=true +             ║
 # ║ ENABLE_WEBTOOLS=false (bench pin) + VISION_HELPER_MODEL on + TOOL_TIMEOUT_MODE=auto; ║
-# ║ MENTOR_AUTO / EFFORT_TAIL / EFFORT_PULSE dark. Pin nexus-cortex@4.91.0 (4.90.0.s    ║
+# ║ MENTOR_AUTO / EFFORT_TAIL / EFFORT_PULSE dark. Pin nexus-cortex@4.93.0 (4.90.0.s    ║
 # ║ timeout-promote was inert). Both models.                                            ║
 # ╚══════════════════════════════════════════════════════════════════════════════════╝
-# Copy to .env and fill in the API keys for the providers you use. Every other value
-# has a proven-optimal default.
+# THIS FILE IS THE MASTER CONFIGURATION DOCUMENT.
+# ─────────────────────────────────────────────────────────────────────────────────
+# Every harness lever lives here, with its value and its [LEDGER] annotation — the one
+# readable place to see and change what the harness does. Edit HERE. On build, this file
+# is mirrored to the committed, shipped `.env.defaults` (the same content), which the
+# harness reads LIVE as its lowest-precedence default layer — so a package upgrade ships
+# these values to every user automatically (nothing to regenerate, no keys to re-enter).
+#
+# PRECEDENCE (highest → lowest): a user's ~/.cortex/.env (their keys + deliberate
+# overrides) → the real shell/injected env → these defaults → the hardcoded floor.
 #
-# WARNING: The Settings Configurator (/config) regenerates .env from SettingsSchema.
-# Runtime-only vars (YOLO, SERVER_IDLE_TIMEOUT, WEB_TOOLS_MODEL, etc.) are NOT in the
-# schema — they will be silently dropped unless the SettingsWriter preserves them.
+# 🔴 SECRETS STAY BLANK HERE. This file is tracked and its mirror ships — provider API
+# keys must NOT carry values (they live in the environment / Replit Secrets / the user's
+# ~/.cortex/.env). The build FAILS if any secret key has a value here.
 #
-# Keep this file and .env structurally in sync: same comments + ordering, only the
-# values differ (.env = your real config, this file = template/defaults).
+# An ACTIVE line is the shipped default (including `LEVER=false` to ship it OFF); a
+# COMMENTED line falls through to the hardcoded floor. Keep the [LEDGER] lines current.
 
 # ============================================
 # API KEYS
@@ -142,7 +154,9 @@ HELPER_MODEL_ID=deepseek-v4-flash
 #   claude-haiku-4-5          — Anthropic web_search server tool (inline source citations)
 #   grok-4-fast-non-reasoning — XAI Responses API web_search (URL citations)
 #   grok-4.3                  — XAI Responses API web_search (reasoning model, URL citations)
-WEB_TOOLS_MODEL=gemini-2.5-flash
+# PRODUCTION DEFAULT: unset (auto-pick by the user's available key, else DuckDuckGo).
+# A local Gemini override lives in the LOCAL-ONLY section at the bottom of this file.
+WEB_TOOLS_MODEL=
 
 # Web surface mode — auto | true | false (default auto).
 #   auto  — WebFetch stays ON (works keyless via the helper-summarizer ladder); WebSearch, Browse,
@@ -237,6 +251,17 @@ CORTEX_EFFORT_PULSE=false
 # [LEDGER 2026-09-02 @4.89.0] DARK — 0 at n=2 (c3): co-fired with the gate on 6/7 tasks; the fd protein-assembly flip did NOT replicate (0/2). Retire-candidate; keep false.
 CORTEX_EFFORT_TAIL=false
 #CORTEX_EFFORT_TAIL_TURNS=2
+# ACTION EFFORT — static reasoning effort for the PRIMARY (action) model. Fills the request
+# param when unset, so it overrides the model CARD's default but NOT an explicit request param
+# or the dynamic effort-pulse. Mentor levers (LIFT_PLAN/ENDTURN_RESOLVER/DEADLINE_EXIT *_EFFORT)
+# are SEPARATE and stay at max. Values: low | medium | high | max (provider-dependent). Unset =
+# the card decides (deepseek cards = medium). Enables the pro-track "wide effort delta" A/B:
+# pro@low-action + pro@max-mentors (cheap decisive executor, deliberation quarantined to mentors).
+# [LEDGER 2026-09-06 @4.93.0] DARK/PENDING — lever built; UNTESTED (the 08-30 A/B was max-vs-medium,
+# never medium-vs-low). Floor risk: too low loses in-loop tool micro-reasoning. Arm in the fanout
+# cell (pro@low vs pro@medium vs pro@max action, mentors@max); winner → bake into the pro card's
+# reasoning.effortByRole.action (validate-then-bake).
+#CORTEX_ACTION_EFFORT=
 # Trigger helper-model review on tool errors (only applies when mentorship is enabled)
 MENTORSHIP_TRIGGER_ON_ERROR=false
 # Minimum error severity to trigger. Options: low, medium, high
@@ -401,11 +426,17 @@ ENABLE_DEFERRED_TOOL_LOADING=true
 #   when mentorship is active, AskForAdvice. Turn 1 stays a pristine narrow door; the
 #   pointer lands only after the model has acted. No-op when deferred loading is off.
 # GLOBAL BASELINE for models WITHOUT a card opinion (harness serves 17 models / 7 providers).
-# The per-model CARD OVERRIDES this (deepseek-v4-flash ships liftNudge:true; pro/vision leave it
-# to this baseline). Set true to enable the signpost fleet-wide for un-carded models; a card can
-# still opt a specific model out. Precedence: card > this env > default.
-# [LEDGER 2026-09-02 @4.89.0] env baseline false; ON via the deepseek CARDS (card > env) — A′: harmless-but-unproven (flips lacked mechanism; nudge ignored on wins). Operator chose to keep.
-CORTEX_LIFT_NUDGE=false
+# The per-model CARD OVERRIDES this (precedence: card > this env > default). ALL THREE deepseek
+# cards (flash/pro/vision) ship liftNudge:true — so this baseline NEVER touched the deepseek k=5
+# reson run (card-forced true regardless of env). Where it DOES apply: un-carded providers
+# (grok / gpt / gemini / claude). It exists to compensate deepseek's boot-minimal preset, which
+# drops TOOL_USAGE_GUIDE so the model otherwise never learns discovery tools exist; models that
+# ship the full tool guide need it less. A card can still opt a specific model out.
+# [LEDGER 2026-09-06 @4.93.0] FLIPPED false->true (operator): extend the signpost fleet-wide.
+# TB2.1-NEUTRAL — deepseek is card-dominated so the bench is identical; this only newly enables it
+# for the un-carded non-deepseek providers (low-risk: a one-line SearchTools/AskForAdvice pointer).
+# Cross-model validation of these deepseek-tuned levers on other providers is PENDING (after TB2.1).
+CORTEX_LIFT_NUDGE=true
 #   CORTEX_LIFT_PLAN — mentor-as-bounded-planner (LIFT_MENTOR_PLANNER spec). At the same anchor-lift
 #   boundary, a bounded max-reasoning mentor plans the task ONCE: adversarial analysis of the prompt
 #   + confirm the REAL grader criteria (not the model's own tests) + a criteria-anchored numbered
@@ -428,7 +459,8 @@ CORTEX_LIFT_NUDGE=false
 #   feeds it to the planner so it steers installs (uv/bun for MISSING packages, beyond bare boxes) and
 #   per-step Bash timeouts from the box's REAL resources; fail-open to observations alone).
 # [LEDGER 2026-09-04 @4.91.1] BUILT DARK / FIRE-CHECKED — v1 shipped gated-off (typecheck clean, planner tests, orchestrator e2e 26/26 no-regression, core build clean). LIVE FIRE-CHECK PASSED (lift_plan event fired:true/planChars>0/criteriaStated:true; negative control clean). ISOLATED EVAL: plan quality EXCELLENT at max+4000 (criteria-anchored, adversarial, anti-self-test) — but caught max+1200=empty (defaults bumped to max/4000/90s). Still UNTESTED for pass-rate lift: needs the treatment bench (grind-retire + criteria-misalign score-lift) BEFORE trusting efficacy. Adapter must add these to its env passthrough or the bench arm runs dark. Keep false.
-CORTEX_LIFT_PLAN=false
+# [LEDGER 2026-09-06 @4.93.0] ON (reson standard baseline). Part of the reson stack (GATE+REQ+LIFT+RESOLVER) that shipped through resolver-k5 (proven net-positive as a stack). NOTE: k5 held LIFT on in BOTH arms (shared baseline, not the A/B variable) — its independent efficacy stands from the 2026-09-04 isolated eval (plan quality excellent at max/4000); k5 ratifies the reson stack as standard, not LIFT in isolation.
+CORTEX_LIFT_PLAN=true
 #CORTEX_LIFT_PLAN_EFFORT=max
 #CORTEX_LIFT_PLAN_BUDGET_TOKENS=4000
 #CORTEX_LIFT_PLAN_TIMEOUT_MS=90000
@@ -443,17 +475,50 @@ CORTEX_LIFT_PLAN=false
 #   Tuning: CORTEX_ENDTURN_RESOLVER_EFFORT (max), CORTEX_ENDTURN_RESOLVER_BUDGET_TOKENS (4000),
 #   CORTEX_ENDTURN_RESOLVER_MAX_REJECTS (2 GAP vetoes → then fallback-accept, liveness), CORTEX_ENDTURN_RESOLVER_TIMEOUT_MS (90000).
 # [LEDGER 2026-09-04 @4.92.0] BUILT DARK — mentor-as-EndTurn-judge; tsc clean, 8/8 resolver tests, orchestrator e2e 26/26 no-regression, eval-validated (caught a missing-NOT_FOUND self-graded pass + passed a correct finish). UNTESTED for pass-rate: the treatment bench = resolver ON vs OFF (both on relaxed). Keep false.
-CORTEX_ENDTURN_RESOLVER=false
+# [LEDGER 2026-09-06 @4.93.0] 🟢 PROVEN NET-POSITIVE + ON (reson = the new STANDARD). resolver-k5 (11-task×5, flash primary + pro@max mentor, resolver ON vs OFF): 5 help / 0 hurt, aggregate 75.5% vs 58.2% (+17pp), cost-neutral-to-cheaper ($0.116/task avg). Judgment quality HIGH (specific correct requirement-gap rejects; reject→retry→pass confirmed in decisions.jsonl); 4 resolver-attributable helps. Open v2 (gating, not verdict text) = coverage(fallback branch) + abstention(over-fires on hopeless). See .cortex/bench/resolver-k5-2026-09-06.md.
+CORTEX_ENDTURN_RESOLVER=true
 #CORTEX_ENDTURN_RESOLVER_EFFORT=max
 #CORTEX_ENDTURN_RESOLVER_BUDGET_TOKENS=4000
 #CORTEX_ENDTURN_RESOLVER_MAX_REJECTS=2
 #CORTEX_ENDTURN_RESOLVER_TIMEOUT_MS=90000
+#   CORTEX_ENDTURN_RESOLVER_ABSTAIN — offer the judge a third verdict, RETIRE, for a structurally
+#   UNCLOSABLE finish (missing capability, wrong-approach loop, impossible constraint) and HONOR it:
+#   accept the finish + STOP the reject cycles instead of burning pro@max re-rejecting a task the
+#   junior can't fix. Confidence gate is in the prompt (when in doubt → GAP). Ships DARK.
+# [LEDGER 2026-09-06 @4.93.0] DARK/PENDING — built (resolver v2 abstention axis); addresses the k=5
+#   over-rejection finding (filter-js 7 rej/0 pass, pytorch 8 rej/1 pass). NOT yet validated live —
+#   arm in the next fanout cell (measure cost-per-PASS + false-RETIRE rate vs resolver-without-abstain).
+#CORTEX_ENDTURN_RESOLVER_ABSTAIN=false
+#
+#   CORTEX_DEADLINE_EXIT_MENTOR — the "smart deadline". At the WARN rung (~0.9 of the per-turn
+#   wall-clock deadline, where residual still exists), a bounded mentor decides what to do with the
+#   time left: CONTINUE (on-track/closing-in — let it run; do NOT truncate a late win), FINISH
+#   (already meets criteria → end now), ACTION (one minimal step closes it → inject + finish), or
+#   RETIRE (stuck/unclosable → end cleanly). Replaces the dumb "wrap up" nudge; the hard-floor break
+#   at the deadline stays as the failsafe. Residual-scaled call budget (never eats the residual it
+#   preserves). Tuning: _EFFORT (max), _BUDGET_TOKENS cap (2000), _TIMEOUT_MS cap (45000),
+#   _RESIDUAL_FRAC (0.4 of remaining ms).
+# [LEDGER 2026-09-06 @4.93.0] DARK/PENDING — built (abnormal-exit/deadline fix; the properly-scoped
+#   deadline adjudication, NOT the mis-premised endturn_gate_fallback). Addresses budget_frac>1.0
+#   overrun + last-fifth grind. 🔴 quality-gated (tell "closing in" from "grinding") — arm in the next
+#   fanout cell; measure pass-rate + budget_frac on the 0.80-1.0 finishing population.
+#CORTEX_DEADLINE_EXIT_MENTOR=false
+#CORTEX_DEADLINE_EXIT_MENTOR_EFFORT=max
+#CORTEX_DEADLINE_EXIT_MENTOR_BUDGET_TOKENS=2000
+#CORTEX_DEADLINE_EXIT_MENTOR_TIMEOUT_MS=45000
+#CORTEX_DEADLINE_EXIT_MENTOR_RESIDUAL_FRAC=0.4
 #   CORTEX_HEADLESS_DROP_ASKUSER — in NON-INTERACTIVE sessions (stateless /v1/messages,
 #   headless API, piped oneshot) there is no human to answer AskUserQuestion, so it is a
 #   stall trap; drop it at the tool source. Kept in interactive TUIs.
-# GLOBAL BASELINE for un-carded models; the per-model card overrides. Precedence: card > env > default.
-# [LEDGER 2026-09-02 @4.89.0] env baseline false; ON via the deepseek CARDS — A′: 0 behavioral difference observed (AskUserQuestion never called). Kept.
-CORTEX_HEADLESS_DROP_ASKUSER=false
+# GLOBAL BASELINE for un-carded models; the per-model card overrides (precedence: card > env >
+# default). ALL THREE deepseek cards ship headlessDropAskUser:true — so this baseline never touched
+# the deepseek k=5 reson run. Where it applies: un-carded providers (grok/gpt/gemini/claude). Only
+# fires in NON-INTERACTIVE sessions (stateless /v1/messages, headless API, piped oneshot) where no
+# human can answer AskUserQuestion — interactive TUIs always keep the tool.
+# [LEDGER 2026-09-06 @4.93.0] FLIPPED false->true (operator): drop the stall-trap tool fleet-wide in
+# headless. TB2.1-NEUTRAL (deepseek card-dominated); only newly affects un-carded non-deepseek
+# providers in headless. Cross-model validation PENDING (after TB2.1).
+CORTEX_HEADLESS_DROP_ASKUSER=true
 # Programmatic Tool Calling (compose tool calls in a script) — experimental
 # [LEDGER 2026-09-02 @4.89.0] DARK/N/A — Anthropic-only server-side code execution; not on the DeepSeek path.
 ENABLE_PTC=false
@@ -494,7 +559,8 @@ ROUTER_MIN_SAMPLES=3
 # Mandatory EndTurn pre-delivery self-audit + Stage 2/3 verifiers. Default OFF; ON =
 # graded cortex-channel training records (the tool is hidden when off).
 # [LEDGER 2026-09-03 @4.91.0] DARK/PENDING → **RECOMMENDED ON for k=5 (with REQUIREMENTS=strict)** — 4.91.0: gates now run on the STREAMING path too (were sendMessage-only; one shared endTurnGates.ts, live-proven on stream:true) and Stage-2 grounding accepts text the model WROTE this turn (Write/Edit content) — the false 'not grounded' rejections on authored files are gone. COST (v4 pass mining + doctrine-mine): every pass paid 4-8 EndTurn round-trips, the biggest share = Stage-2 CITATION rejects (17/43 doctrine findings; the model never re-ran a command for a fresh verbatim line) → 4.90.2 nudge teaches per-turn grounding + re-run; expect controls' +25-35% turn tax to drop — measure at k=5. — v4 (n=1, @4.90.0): gate engaged heavily under strict (flash gate_req=22/cite=13, pro 17/4), controls bn-fit+sqlite held on BOTH models, pro flips vs p3: dna-insert, pytorch-model-cli, cancel-async (n=1 candidates). Prior 3 cells: 4.71 fp 11→1 · fd +2/5 · c3 (n=2, r-c3-candidate-config) code-from-image FLIP 2/2 (first flash-family pass ever; Stage-4 requirement rejections, no mentor) + dna-insert 1/2; 0 clean regressions outside its LIMIT (accepts a re-attested wrong artifact: pytorch-model-cli r2, dna-insert fd). Cost: attestation turns. Operator decision pending. PRO (r-p3, n=1): controls 3/3 held with NO attestation tax (bn-fit 53→30 turns), 0 regressions, 0 paralysis; 0/13 flips on pro's hard core (budget timeouts while working). → k=5 config for BOTH models: guards + GATE+REQ + ENABLE_WEBTOOLS=false, mentor/tail off.
-CORTEX_ENDTURN_GATE=false
+# [LEDGER 2026-09-06 @4.93.0] ON (reson standard baseline). GATE+REQ (with REQUIREMENTS=true, NOT strict) shipped as the shared reson baseline through resolver-k5 — proven net-positive as a stack. k5 held GATE on in both arms; prior cell evidence stands. Part of the standard.
+CORTEX_ENDTURN_GATE=true
 # Stage 4 (4.70.0, requires the gate ON): task-requirements attestation —
 # enumerate each stated requirement with what satisfies it + how it was
 # verified; mutating turns with no checks are challenged. Default OFF.
@@ -505,7 +571,8 @@ CORTEX_ENDTURN_GATE=false
 # (cancel-async-tasks, dna-assembly, dna-insert, pytorch-model-cli) were 85-95% complete with
 # TRUE attestations verified against the model's own tests, not the task's exact constraints.
 # [LEDGER 2026-09-03 @4.91.0] DARK/PENDING → `strict` RECOMMENDED for k=5 with the gate. 4.91.0: verified_how also grounds on a Bash command that RAN this turn (12-char windows) so the recommended `$ cmd → output` form passes; Stage-1 reminder names `requirements`. v4 cell (n=1): strict rejects fired heavily (flash gate_req=22, pro=17), 0 control regressions. 🔴 4.90.0 strict CRASHED on EndTurn({}) (null.filter ×4, flash/dna-insert) and rejected 11 honest condensations as paraphrases (protein-assembly) → 4.90.1: null-guarded; verbatim = 24-char window OR ≥70% content tokens; nudge shows a pasted-output example. Needs GATE.
-#CORTEX_ENDTURN_REQUIREMENTS=false
+# [LEDGER 2026-09-06 @4.93.0] ON=true (reson standard baseline — NOT strict). resolver-k5 ran REQUIREMENTS=true (verified in effective_config), not strict — that is the proven reson baseline; the earlier "strict recommended" is superseded by the actual reson config. Requires GATE=on.
+CORTEX_ENDTURN_REQUIREMENTS=true
 
 # ============================================
 # DECISION STORE (prior-recall + recording)
@@ -809,7 +876,8 @@ CORTEX_SLICE_NUDGE=true
 # the one bare-box pass we have (tp torch-tensor, 4.91.0) happened with ONLY orient's factual tooling line, no
 # directive. The factual tooling line is always on; this flag adds the directive.
 # [LEDGER 2026-09-03 @4.91.1] DARK (default 0) — ships dark, A/B-able (def-60a1dfc55a); do NOT bake into the k=5 pin.
-#CORTEX_ORIENT_BOOTSTRAP=0
+# [LEDGER 2026-09-06 @4.93.0] ON=1 (reson standard, operator directive: match the full bench COMMON). CAVEAT: was a SHARED BASELINE in both k5 arms (on in reson AND resoff), so NOT independently A/B-validated — it's part of the proven reson BUNDLE (+17pp) but its solo contribution is unmeasured. A/B-able (def-60a1dfc55a) if isolated efficacy is ever needed.
+CORTEX_ORIENT_BOOTSTRAP=1
 # [LEDGER 2026-09-02 @4.89.0] code default 30 (4.88.0) — 20 made the break rung (2N=24) unreachable; preserves 40%/80% density semantics.
 #NEARDUP_WINDOW=30
 # [LEDGER 2026-09-02 @4.89.0] code default 12 (4.88.0) — 8 misfired on persistence-wins grinds (rstan-to-pystan regressed both arms).
@@ -818,4 +886,4 @@ CORTEX_SLICE_NUDGE=true
 
 # --- OPTIMAL LIFT CONFIG (appended) ---
 # [LEDGER 2026-09-02 @4.90.0] DEAD — no code path reads CORTEX_IDLE_TIMEOUT (grep packages/*/src = 0 hits); it was cargo-culted into the bench adapter env for months and removed there in adapter v21 (p3 timeout audit). Left commented so nobody re-adds it as a "lever".
-#CORTEX_IDLE_TIMEOUT=120
+#CORTEX_IDLE_TIMEOUT=120

package/dist/config/MentorshipConfigService.d.ts

@@ -28,7 +28,6 @@ export interface MentorshipConfig {
  */
 export declare class MentorshipConfigService implements ConfigService<MentorshipConfig> {
     private loader;
-    private writer;
     constructor(projectPath?: string);
     /**
      * Get current mentorship configuration

package/dist/config/MentorshipConfigService.d.ts.map

@@ -1 +1 @@
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package/dist/config/MentorshipConfigService.js

@@ -5,8 +5,7 @@
  * Provides a menu definition that can be rendered by any CLI UI.
  */
 import { createStandardActions } from '../ui/menu-types.js';
-import { SettingsLoader } from './SettingsLoader.js';
-import { SettingsWriter } from './SettingsWriter.js';
+import { SettingsLoader, setGlobalSetting } from './SettingsLoader.js';
 import { SETTINGS_METADATA, DEFAULT_SETTINGS } from './SettingsSchema.js';
 /**
  * Map of config keys to environment variable keys
@@ -37,10 +36,10 @@ const ENV_KEY_MAP = Object.entries(CONFIG_KEY_MAP)
  */
 export class MentorshipConfigService {
     loader;
-    writer;
     constructor(projectPath = process.cwd()) {
+        // Reads use the given projectPath (effective config); writes go to the GLOBAL
+        // ~/.cortex/.env surgically via setGlobalSetting (see setConfig).
         this.loader = new SettingsLoader(projectPath);
-        this.writer = new SettingsWriter(projectPath);
     }
     /**
      * Get current mentorship configuration
@@ -80,7 +79,13 @@ export class MentorshipConfigService {
                 }
             }
         }
-        this.writer.update(updates);
+        // Harness config is GLOBAL + sparse: write each changed key surgically to
+        // ~/.cortex/.env (not a full-file regen at cwd, which would re-freeze every lever
+        // and break upgrade propagation).
+        for (const [envKey, val] of Object.entries(updates)) {
+            setGlobalSetting(envKey, val);
+            process.env[envKey] = val;
+        }
         this.loader.reload();
     }
     /**

package/dist/config/MentorshipConfigService.js.map

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package/dist/config/SettingsLoader.d.ts

@@ -6,6 +6,7 @@
  */
 import type { OrchestratorConfig } from '../orchestrator/CortexOrchestrator.js';
 import type { EnvironmentVariables } from './SettingsSchema.js';
+import { DEFAULT_SETTINGS } from './SettingsSchema.js';
 /**
  * Result of a write operation
  */
@@ -29,20 +30,51 @@ export declare function parseEnvFile(content: string): EnvironmentVariables;
 export declare function getGlobalConfigDir(): string;
 /** Absolute path to the global config file (~/.cortex/.env). */
 export declare function getGlobalEnvPath(): string;
+/**
+ * Resolve the shipped `.env.defaults` — the read-live default config layer.
+ *
+ * This file is committed + ships in the package and is READ directly (never copied
+ * into the user's .env), so a package upgrade ships new defaults automatically. It is
+ * loaded as the LOWEST-precedence layer (below the user's ~/.cortex/.env, below the
+ * real shell env) and also overlays DEFAULT_SETTINGS as the effective floor.
+ *
+ * Search order mirrors the (legacy) seed: the caller's packageRoot, then cwd, then
+ * CORE's own root — core is a dependency of every entry point and is build-synced
+ * with the root canonical, so the file exists for any current/future bin even when
+ * the calling package doesn't ship its own copy.
+ */
+export declare function resolveDefaultsEnvPath(packageRoot?: string): string | undefined;
+/**
+ * The keys-only seed for a fresh `~/.cortex/.env`: the secret keys + a short header,
+ * NO levers. Harness defaults ship in `.env.defaults` and are read live, so freezing
+ * them into the user's file is exactly what blocks upgrades from propagating new
+ * defaults. Seeding only the keys keeps the file sparse — an upgrade brings new
+ * defaults with nothing to regenerate and no keys to re-enter.
+ */
+export declare function keysOnlyStub(): string;
+/**
+ * `DEFAULT_SETTINGS` overlaid with the shipped `.env.defaults` — the EFFECTIVE floor.
+ *
+ * The read-live default layer reaches most levers through `process.env` (bootstrapEnv
+ * loads `.env.defaults` as the lowest base file), but a handful of merge keys don't
+ * consult `process.env`. Overlaying `.env.defaults` onto `DEFAULT_SETTINGS` makes the
+ * shipped file authoritative for EVERY lever. Secrets are untouched (they are Omitted
+ * from `DEFAULT_SETTINGS`, so the loop never visits them). Cached — the shipped file
+ * does not change at runtime.
+ */
+export declare function getEffectiveDefaults(): Readonly<typeof DEFAULT_SETTINGS>;
 /**
  * THE canonical .env → process.env bootstrap for every CLI/TUI entry point.
  *
  * One implementation, so a consumer never hand-rolls dotenv loading (and can't
- * forget the global `~/.cortex/.env`). This function ONLY READS + layers existing
- * .env files into process.env — it never CREATES one. The global `~/.cortex/.env`
- * is seeded SEPARATELY, on first run, by the bin: `packages/cli/bin/cortex.js`
- * copies the shipped `.env.example` → `~/.cortex/.env` when that file is missing
- * (the Docker image does the same copy at build time). All bins call this ONCE at
- * startup; a change here takes effect for every launcher.
+ * forget the global `~/.cortex/.env`). It seeds a KEYS-ONLY `~/.cortex/.env` on first
+ * run (below), then READS + layers the .env files into process.env. All bins call this
+ * ONCE at startup; a change here takes effect for every launcher.
  *
- * Precedence (highest → lowest): a `.env.local` beside any of the base files wins
- * over everything; then project `./.env` (or `packageRoot/.env`) beats the global
- * `~/.cortex/.env`. Matches `loadEnvFile()`'s layering.
+ * Precedence (highest → lowest): a `.env.local` beside any of the base files wins over
+ * everything; then project `./.env` (or `packageRoot/.env`) beats the global
+ * `~/.cortex/.env`, which beats the shipped `.env.defaults` (the read-live default
+ * layer, appended last). Matches `loadEnvFile()`'s layering.
  *
  * FIRST-WINS over the real environment: a value already present in `process.env`
  * (e.g. a key the hosting container injected) is NEVER overwritten by a base .env
@@ -74,6 +106,42 @@ export declare function writeEnvSetting(projectPath: string, key: keyof Environm
  * Update multiple settings in the .env file
  */
 export declare function writeEnvSettings(projectPath: string, settings: Partial<EnvironmentVariables>): Record<string, WriteResult>;
+/**
+ * Surgically REMOVE a setting's line from the .env file (delete the `KEY=...` line and
+ * its value), preserving every other line and all comments. This is the correct "reset
+ * to default" in the read-live model: deleting a user's override line makes the lever
+ * fall back to the shipped `.env.defaults` — so the user rejoins the default flow and
+ * picks up future improvements. (Writing the current default VALUE would re-freeze it.)
+ * A key that isn't present is a no-op success.
+ */
+export declare function removeEnvSetting(projectPath: string, key: keyof EnvironmentVariables): WriteResult;
+/** Set a single setting in the GLOBAL ~/.cortex/.env (surgical, sparse). The canonical
+ *  write target for every /config surface — harness config is global (identical from any
+ *  directory), so a user's choice lives in one place and survives package updates. */
+export declare function setGlobalSetting(key: keyof EnvironmentVariables, value: string): WriteResult;
+/** Remove a single setting's override line from the GLOBAL ~/.cortex/.env (reset-to-default). */
+export declare function removeGlobalSetting(key: keyof EnvironmentVariables): WriteResult;
+/** The SHIPPED default value for a lever, read from the live `.env.defaults` (covers every
+ *  lever, including the ones not in DEFAULT_SETTINGS). '' if the file/key is absent. Used
+ *  to restore a lever to its shipped default after removing a user override. */
+export declare function getShippedDefault(key: keyof EnvironmentVariables): string;
+/**
+ * ONE-TIME migration for EXISTING users upgrading to the read-live model. The old install
+ * seeded a FULL copy of every lever into `~/.cortex/.env`, which now FREEZES those levers
+ * (a user value beats the shipped `.env.defaults`), so an upgrade would never reach them.
+ *
+ * This collapses that full snapshot back to SPARSE: a lever line is removed when its value
+ * equals a DEFAULT — either the new shipped default (`.env.defaults`) OR the hardcoded
+ * `DEFAULT_SETTINGS` floor (which still holds the OLD pre-reson defaults). Matching either
+ * means the user never deliberately chose it, so removing it lets the lever inherit the
+ * current shipped default (and every future one). Genuine divergences and ALL API keys are
+ * preserved untouched. Marker-gated (`~/.cortex/.env-migrated`) so it runs exactly once;
+ * best-effort (never blocks boot); only acts on a FULL snapshot, never a sparse file.
+ */
+export declare function migrateGlobalConfigToSparse(): {
+    migrated: boolean;
+    removed: number;
+};
 /**
  * Get Google/Gemini API key with proper fallback
  * Priority: GEMINI_API_KEY (recommended by Google) -> GOOGLE_API_KEY (legacy)
@@ -138,11 +206,24 @@ export declare class SettingsLoader {
      */
     setMultiple(settings: Partial<EnvironmentVariables>): Record<string, WriteResult>;
     /**
-     * Reset a setting to its default value
+     * Remove a setting's override line (reset-to-default). Deletes the user's override so
+     * the lever falls back to the shipped `.env.defaults` — the correct reset in the
+     * read-live model (writing the current default value would re-freeze it).
      */
+    remove<K extends keyof EnvironmentVariables>(key: K): WriteResult;
+    /** Alias — reset a single setting to the shipped default by removing the override. */
     resetToDefault<K extends keyof EnvironmentVariables>(key: K): WriteResult;
     /**
-     * Reset all settings to defaults
+     * True if this key is set as an override in the user's OWN .env file (vs flowing from
+     * the shipped .env.defaults). Powers the "your override / shipped default" display.
+     */
+    isUserOverride<K extends keyof EnvironmentVariables>(key: K): boolean;
+    /** All keys the user has overridden in their own .env file (one read — for a display
+     *  that needs to mark many rows without re-reading the file per row). */
+    getOverriddenKeys(): string[];
+    /**
+     * Reset all LEVERS to defaults by removing their override lines (API keys preserved),
+     * so every lever falls back to the shipped `.env.defaults`.
      */
     resetAllToDefaults(): Record<string, WriteResult>;
     /**

package/dist/config/SettingsLoader.d.ts.map

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