@nexus-cortex/core 4.90.0 → 4.90.1

package/.env.example

@@ -256,8 +256,11 @@ MENTORSHIP_HELPER_MODEL=deepseek-v4-pro
 # and returns TEXT (the primary never receives image bytes — item 7's safety intent holds). Evidence: in EVERY
 # image task of the c3/p3 cells (chess-best-move ×2, gcode-to-text, code-from-image ×2) the text model SEARCHED
 # for an image tool by name, found none, and hand-built tesseract/PIL pipelines that ate the budget. Same DeepSeek
-# key. Set false to restrict ReadImage to vision-capable primaries. LIVE 09-02: flash transcribed a test PNG
-# exactly (3 lines, 1 iteration) through the helper; bench cell on chess/gcode/code-from-image pending.
+# key. Set false to restrict ReadImage to vision-capable primaries.
+# [LEDGER 2026-09-03 @4.90.0] ON — VALIDATED on the real bench (r-v4-validation-2026-09-03, n=1): fired HEAVILY
+# (flash 25 / pro 45 vision_handoff events) and drove flips — flash chess-best-move PASS (ReadImage×6, first flash-family
+# chess pass ever), pro dna-insert PASS (vis×6, p3-without-vision failed it), code-from-image PASS both models. Headline
+# k=5 lever.
 VISION_HELPER_MODEL=deepseek-v4-flash-vision-exp
 # Periodic mentorship review every N turns
 MENTORSHIP_TURN_BASED_ENABLED=false
@@ -332,7 +335,7 @@ TOOL_BUDGET_SOFT=400
 # deadline in interactive ones.
 # [LEDGER 2026-09-02 @4.90.0] ON=120000 — p3 timeout audit (r-p3): the 120s kill fired 42× across 14 task-runs and RESCUED NONE (train-fasttext busy-wait driver, long builds); every p3 timeout was Harbor's budget, not ours. Kept at 120s because TOOL_TIMEOUT_MODE=auto now promotes instead of kills in headless (item 8); v4 cell measures tool_promoted events.
 TOOL_TIMEOUT_MS=120000
-# [LEDGER 2026-09-02 @4.90.0] ON=auto (NEW) — PROMOTE-AT-DEADLINE: when a Bash call exceeds TOOL_TIMEOUT_MS in a
+# [LEDGER 2026-09-03 @4.90.1] ON=auto — 🔴 4.90.0 was INERT: the orchestrator's outer abort raced ShellTool's deadline and always won (v4 pro/train-fasttext: 22 cancelled, 0 promoted). 4.90.1: outer cap = TOOL_TIMEOUT_MS+30s, ShellTool default follows TOOL_TIMEOUT_MS; LIVE-VERIFIED (5s deadline, 9s command → tool_promoted event, model read the background output). Re-test task: train-fasttext. PROMOTE-AT-DEADLINE: when a Bash call exceeds TOOL_TIMEOUT_MS in a
 # headless/auto-approve session, the still-running command is moved to a background shell (bash_id) and the tool
 # returns the output so far instead of killing it; interactive sessions keep the kill. Evidence (c3/p3 trajectories):
 # the 120s kill fired 42x across 14 task-runs (19 legitimate scripts, 12 wait loops, 5 builds/trainings) and rescued
@@ -446,7 +449,7 @@ CORTEX_ENDTURN_GATE=false
 # (a claim with no matching tool output is rejected). Motivation: 4 pro fails
 # (cancel-async-tasks, dna-assembly, dna-insert, pytorch-model-cli) were 85-95% complete with
 # TRUE attestations verified against the model's own tests, not the task's exact constraints.
-# [LEDGER 2026-09-02 @4.90.0] DARK/PENDING → `true` recommended ON with the gate (c3: code-from-image flip ×2; p3: safe on pro, 0 tax); `strict` = v4 validation cell (fresh, unmeasured). Needs GATE.
+# [LEDGER 2026-09-03 @4.90.1] DARK/PENDING → `strict` RECOMMENDED for k=5 with the gate. v4 cell (n=1): strict rejects fired heavily (flash gate_req=22, pro=17), 0 control regressions. 🔴 4.90.0 strict CRASHED on EndTurn({}) (null.filter ×4, flash/dna-insert) and rejected 11 honest condensations as paraphrases (protein-assembly) → 4.90.1: null-guarded; verbatim = 24-char window OR ≥70% content tokens; nudge shows a pasted-output example. Needs GATE.
 #CORTEX_ENDTURN_REQUIREMENTS=false
 
 # ============================================

package/dist/orchestrator/CortexOrchestrator.d.ts.map

@@ -1 +1 @@
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package/dist/orchestrator/CortexOrchestrator.js

@@ -64,6 +64,8 @@ import { detectTailRepetition, tailLoopGuardEnabled } from './tailRepetitionDete
 import { classifyEmptyResponse, emptyResponseNudge } from './emptyResponseClassifier.js';
 // PTC: Progressive tool loading for non-PTC providers
 import { ClientSideToolFilter } from '../tools/ClientSideToolFilter.js';
+/** Grace the orchestrator's outer tool-abort waits past the tool's own deadline (ShellTool promote/kill fires first; 4.90.1). */
+const OUTER_TIMEOUT_GRACE_MS = 30_000;
 /**
  * Cortex Orchestrator - Phase 2.1
  *
@@ -1909,11 +1911,16 @@ export class CortexOrchestrator {
                     break;
                 }
                 // Phase 2.5 Day 3: Execute tools with timeout support
+                // 🔴 4.90.1: this OUTER abort must not race ShellTool's own deadline — ShellTool promotes a
+                // still-running Bash to the background AT TOOL_TIMEOUT_MS (TOOL_TIMEOUT_MODE), and an outer
+                // abort at the same instant made the promote inert (v4 pro/train-fasttext: 22 "cancelled",
+                // 0 promotions). The outer timer is the last-resort cap for hung tools: it fires a grace
+                // period AFTER the tool's own deadline.
                 const abortController = new AbortController();
                 const timeoutId = setTimeout(() => {
-                    console.warn(`[Orchestrator Phase 2.5] Tool execution timeout after ${TOOL_TIMEOUT_MS}ms`);
+                    console.warn(`[Orchestrator Phase 2.5] Tool execution timeout after ${TOOL_TIMEOUT_MS + OUTER_TIMEOUT_GRACE_MS}ms`);
                     abortController.abort();
-                }, TOOL_TIMEOUT_MS);
+                }, TOOL_TIMEOUT_MS + OUTER_TIMEOUT_GRACE_MS);
                 // Track which tool_use_ids have been processed to avoid duplicates in error handler
                 const processedToolUseIds = new Set();
                 try {
@@ -3738,14 +3745,15 @@ export class CortexOrchestrator {
             if (toolCallIteration >= MAX_TOOL_ITERATIONS) {
                 break;
             }
-            // Execute tools with timeout
+            // Execute tools with timeout (outer cap fires a grace period AFTER the tool's own deadline —
+            // see the non-stream site: ShellTool's promote-at-deadline must win the race; 4.90.1)
             const abortController = new AbortController();
             const timeoutId = setTimeout(() => {
                 if (this.config.debug) {
-                    console.warn(`[Orchestrator Streaming] Tool execution timeout after ${TOOL_TIMEOUT_MS}ms`);
+                    console.warn(`[Orchestrator Streaming] Tool execution timeout after ${TOOL_TIMEOUT_MS + OUTER_TIMEOUT_GRACE_MS}ms`);
                 }
                 abortController.abort();
-            }, TOOL_TIMEOUT_MS);
+            }, TOOL_TIMEOUT_MS + OUTER_TIMEOUT_GRACE_MS);
             try {
                 // Execute tools (reuse existing method)
                 const toolResults = await this.handleToolCalls(toolUseBlocks, abortController.signal, structuredOutputState);