@nexus-cortex/core 4.26.0

package/dist/training/ExperimentRunner.d.ts

@@ -0,0 +1,88 @@
+/**
+ * ExperimentRunner — the single-experiment measurement core.
+ *
+ * One auto-research experiment = bench a BASE harness build and a CANDIDATE
+ * harness build on the same fixed-eval tasks (train + optional holdout), then run
+ * the keep/discard gate. This module owns the *measurement* composition; the CLI
+ * (`cortex autoresearch experiment`) owns the *lifecycle* (build each worktree,
+ * serve each on its own port, teardown) and injects the two arms as
+ * `HarnessRunner`s pointed at the running servers.
+ *
+ * CRITICAL (the "two builds, not one relabel" correctness): the two arms MUST be
+ * backed by servers running DIFFERENT code (base build vs candidate build). This
+ * module can't enforce that — it only sees two runners — so the CLI guarantees it
+ * by serving each dir's own build. `harnessRef` labels each arm's records with
+ * the git SHA the serving build came from; the gate compares by `harnessRef`.
+ *
+ * OVERFITTING DISCIPLINE: train drives keep/discard; holdout is a SEPARATE gate.
+ * `mergeEligible` requires keep-on-train AND fwerAdjusted AND keep-on-holdout —
+ * and is FALSE when no holdout was run (can't verify → not mergeable; fixed ≠
+ * verified). The fixing agent must never have seen the holdout tasks (enforced
+ * upstream).
+ */
+import { ModelRouterMatrix } from './ModelRouterMatrix.js';
+import { ExperimentLedger } from './ExperimentLedger.js';
+import { type TaskSpec, type HarnessRunner, type BenchSummary } from './BenchRunner.js';
+import type { ExperimentRecord } from './ExperimentLedger.js';
+import type { ExperimentVerdict } from './AutoResearchStats.js';
+export interface ExperimentArms {
+    /** runner pointed at the BASE build's server. */
+    baseRunner: HarnessRunner;
+    /** runner pointed at the CANDIDATE build's server. */
+    candidateRunner: HarnessRunner;
+}
+export interface RunExperimentOptions {
+    experimentTag: string;
+    /** git ref / label of the base build serving baseRunner. */
+    baseRef: string;
+    /** git ref / label of the candidate build serving candidateRunner. */
+    candidateRef: string;
+    branch: string;
+    trainTasks: TaskSpec[];
+    holdoutTasks?: TaskSpec[];
+    runs?: number;
+    nFamily?: number;
+    modelId?: string;
+    deficiencyId?: string;
+    benchmarkSource?: string;
+    gate?: {
+        alpha?: number;
+        seed?: number;
+        minRunsPerArm?: number;
+    };
+    epsilon?: number;
+    onProgress?: (msg: string) => void;
+    /** Effectiveness-arm labels recorded on BOTH base + candidate records (the experiment
+     *  isolates the harness-version variable, so both arms share the same dispatch config).
+     *  Lets later queries ask "at this temperature / strategy, did the candidate win?".
+     *  Omitted ⇒ falls back to the CORTEX_SUBAGENT_TEMPERATURE / CORTEX_ARM_STRATEGY env stamp. */
+    temperature?: number;
+    strategy?: string;
+}
+export interface ExperimentBenchSummaries {
+    base: {
+        train: BenchSummary;
+        holdout?: BenchSummary;
+    };
+    candidate: {
+        train: BenchSummary;
+        holdout?: BenchSummary;
+    };
+}
+export interface ExperimentResult {
+    record: ExperimentRecord;
+    verdict: ExperimentVerdict;
+    regressedTasks: string[];
+    holdoutVerdict: ExperimentVerdict | null;
+    /** keep-on-train ∧ fwerAdjusted ∧ keep-on-holdout. FALSE without holdout. */
+    mergeEligible: boolean;
+    benchSummaries: ExperimentBenchSummaries;
+}
+/**
+ * Bench both arms (train + optional holdout) into the shared matrix, then run the
+ * gate + the held-out verification, and compute merge-eligibility. Pure of
+ * process/lifecycle — the arms are injected runners, so this unit-tests with
+ * scripted mock runners (no servers).
+ */
+export declare function runExperiment(matrix: ModelRouterMatrix, ledger: ExperimentLedger, arms: ExperimentArms, opts: RunExperimentOptions): Promise<ExperimentResult>;
+//# sourceMappingURL=ExperimentRunner.d.ts.map

package/dist/training/ExperimentRunner.d.ts.map

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package/dist/training/ExperimentRunner.js

@@ -0,0 +1,97 @@
+/**
+ * ExperimentRunner — the single-experiment measurement core.
+ *
+ * One auto-research experiment = bench a BASE harness build and a CANDIDATE
+ * harness build on the same fixed-eval tasks (train + optional holdout), then run
+ * the keep/discard gate. This module owns the *measurement* composition; the CLI
+ * (`cortex autoresearch experiment`) owns the *lifecycle* (build each worktree,
+ * serve each on its own port, teardown) and injects the two arms as
+ * `HarnessRunner`s pointed at the running servers.
+ *
+ * CRITICAL (the "two builds, not one relabel" correctness): the two arms MUST be
+ * backed by servers running DIFFERENT code (base build vs candidate build). This
+ * module can't enforce that — it only sees two runners — so the CLI guarantees it
+ * by serving each dir's own build. `harnessRef` labels each arm's records with
+ * the git SHA the serving build came from; the gate compares by `harnessRef`.
+ *
+ * OVERFITTING DISCIPLINE: train drives keep/discard; holdout is a SEPARATE gate.
+ * `mergeEligible` requires keep-on-train AND fwerAdjusted AND keep-on-holdout —
+ * and is FALSE when no holdout was run (can't verify → not mergeable; fixed ≠
+ * verified). The fixing agent must never have seen the holdout tasks (enforced
+ * upstream).
+ */
+import { runBench } from './BenchRunner.js';
+import { evaluateExperiment, verifyOnHoldout } from './AutoResearchGate.js';
+/**
+ * Bench both arms (train + optional holdout) into the shared matrix, then run the
+ * gate + the held-out verification, and compute merge-eligibility. Pure of
+ * process/lifecycle — the arms are injected runners, so this unit-tests with
+ * scripted mock runners (no servers).
+ */
+export async function runExperiment(matrix, ledger, arms, opts) {
+    const runs = opts.runs ?? 2;
+    const log = opts.onProgress ?? (() => { });
+    const benchOpts = (split, harnessRef, runner, tasks) => runBench(tasks, runner, matrix, {
+        experimentTag: opts.experimentTag,
+        runs,
+        split,
+        modelId: opts.modelId,
+        benchmarkSource: opts.benchmarkSource,
+        harnessRef,
+        temperature: opts.temperature,
+        strategy: opts.strategy,
+    });
+    // 1. Train arms (drive keep/discard).
+    log(`bench base/train @ ${opts.baseRef}`);
+    const baseTrain = await benchOpts('train', opts.baseRef, arms.baseRunner, opts.trainTasks);
+    log(`bench candidate/train @ ${opts.candidateRef}`);
+    const candTrain = await benchOpts('train', opts.candidateRef, arms.candidateRunner, opts.trainTasks);
+    // 2. Holdout arms (verify generalization), if a holdout set was provided.
+    let baseHoldout;
+    let candHoldout;
+    if (opts.holdoutTasks && opts.holdoutTasks.length > 0) {
+        log(`bench base/holdout @ ${opts.baseRef}`);
+        baseHoldout = await benchOpts('holdout', opts.baseRef, arms.baseRunner, opts.holdoutTasks);
+        log(`bench candidate/holdout @ ${opts.candidateRef}`);
+        candHoldout = await benchOpts('holdout', opts.candidateRef, arms.candidateRunner, opts.holdoutTasks);
+    }
+    // 3. Keep/discard gate over the train records.
+    log('gate (train)');
+    const gateResult = evaluateExperiment(matrix, ledger, {
+        experimentTag: opts.experimentTag,
+        baseRef: opts.baseRef,
+        candidateRef: opts.candidateRef,
+        branch: opts.branch,
+        deficiencyId: opts.deficiencyId,
+        benchmarkSource: opts.benchmarkSource,
+        nFamilyExperiments: opts.nFamily ?? 1,
+        gate: opts.gate,
+        epsilon: opts.epsilon,
+    });
+    // 4. Held-out verification (the mandatory second gate).
+    const holdoutVerdict = (opts.holdoutTasks && opts.holdoutTasks.length > 0)
+        ? verifyOnHoldout(matrix, {
+            baseRef: opts.baseRef,
+            candidateRef: opts.candidateRef,
+            benchmarkSource: opts.benchmarkSource,
+            nFamilyExperiments: opts.nFamily ?? 1,
+            gate: opts.gate,
+            epsilon: opts.epsilon,
+        })
+        : null;
+    const mergeEligible = gateResult.verdict.decision === 'keep' &&
+        gateResult.verdict.fwerAdjusted === true &&
+        holdoutVerdict?.decision === 'keep';
+    return {
+        record: gateResult.record,
+        verdict: gateResult.verdict,
+        regressedTasks: gateResult.regressedTasks,
+        holdoutVerdict,
+        mergeEligible,
+        benchSummaries: {
+            base: { train: baseTrain, holdout: baseHoldout },
+            candidate: { train: candTrain, holdout: candHoldout },
+        },
+    };
+}
+//# sourceMappingURL=ExperimentRunner.js.map

package/dist/training/ExperimentRunner.js.map

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package/dist/training/ModelRouterMatrix.d.ts

@@ -0,0 +1,197 @@
+/**
+ * ModelRouterMatrix — append-only JSONL benchmark store and model router.
+ *
+ * Ingests scored benchmark runs and produces composite scores balancing
+ * correctness, efficiency, speed, and cost. Consumers call `recommend()`
+ * for the best model for a given task type from accumulated empirical data.
+ *
+ * Persistence: `<projectRoot>/.cortex/router-matrix.jsonl`
+ * Compaction: when file exceeds byte cap, raw records are aggregated into
+ * weighted summary records (one per model+taskType). Summaries carry
+ * `_summary: true` and `_sampleCount` so new observations don't dilute
+ * historical knowledge. Falls back to simple rename if compaction fails.
+ *
+ * Assimilated from 6 model-generated implementations (2026-05-20 benchmark):
+ *   - DeepSeek V4 Flash: JSONL rotation, field validation, configurable weights
+ *   - Haiku 4.5: logistic/exponential scoring curves for speed/cost
+ *   - Gemini 3 Flash: clean async read, production-ready structure
+ *   - Grok-4-1-fast: per-task cold-start defaults, cache invalidation
+ *   - Grok-code-fast: sync write for crash-safety
+ *   - Gemini 2.5 Flash: model cost lookup table concept (fixed to use IDs)
+ */
+import { type ThompsonOptions } from './ThompsonRouter.js';
+export interface BenchmarkRecord {
+    modelId: string;
+    taskType: string;
+    toolCallCount: number;
+    inputTokens: number;
+    outputTokens: number;
+    latencyMs: number;
+    pass: boolean;
+    qualitativeScore: number;
+    timestamp?: string;
+    costCents?: number;
+    /** git commit the running harness was built from (auto-stamped). Enables
+     *  per-harness-version comparison, not just per-model. */
+    harnessRef?: string;
+    /** stable hash of the exact task+verifier — makes cross-version comparisons
+     *  apples-to-apples (autoresearch "fixed eval" discipline). */
+    taskFingerprint?: string;
+    /** the worktree experiment round this record belongs to (from CORTEX_EXPERIMENT_TAG). */
+    experimentTag?: string;
+    /** OVERFITTING GUARD: 'holdout' records are reserved for final validation and
+     *  must NOT be used to make keep/discard decisions — only to confirm a fix
+     *  generalizes. Defaults to 'train'. Set holdout via CORTEX_BENCH_HOLDOUT=true. */
+    split?: 'train' | 'holdout';
+    /** Which benchmark produced this record. Keeps the pipeline source-agnostic so
+     *  EXTERNAL official benchmarks (swebench, aider-polyglot, terminal-bench, …)
+     *  feed the SAME matrix + backlog as the internal cortex-bench tasks. Defaults
+     *  to 'cortex-bench'. An external runner records under its own source + the
+     *  instance id as taskFingerprint, and pass/qualitativeScore from its grader. */
+    benchmarkSource?: string;
+    /** dispatch temperature this run used (auto-stamped from CORTEX_SUBAGENT_TEMPERATURE). */
+    temperature?: number;
+    /** the PM-assigned arm persona/strategy label (auto-stamped from CORTEX_ARM_STRATEGY). */
+    strategy?: string;
+}
+export interface ModelScore {
+    modelId: string;
+    taskType: string;
+    compositeScore: number;
+    components: {
+        correctness: number;
+        efficiency: number;
+        speed: number;
+        cost: number;
+    };
+    sampleCount: number;
+    avgPassRate: number;
+    avgQualitativeScore: number;
+    avgToolCalls: number;
+    avgInputTokens: number;
+    avgOutputTokens: number;
+    avgLatencyMs: number;
+    avgCostCents: number;
+    /** Set ONLY by getStrategyScores/recommendStrategy (the arm dimension). The
+     *  model-routing path (getScores/recommend) leaves these undefined. */
+    temperature?: number;
+    strategy?: string;
+}
+export interface CostEfficiencyProfile {
+    modelId: string;
+    totalRuns: number;
+    meanCompositeScore: number;
+    meanCostCents: number;
+    scorePerDollar: number;
+    taskTypeCoverage: number;
+    strongTasks: string[];
+    weakTasks: string[];
+    perTaskType: Record<string, {
+        runs: number;
+        compositeScore: number;
+        avgCostCents: number;
+    }>;
+}
+export type ScoringMatrix = Record<string, Record<string, ModelScore>>;
+export declare const DEFAULT_MATRIX_MAX_BYTES: number;
+export declare const DEFAULT_COMPOSITE_WEIGHTS: {
+    readonly correctness: 0.4;
+    readonly efficiency: 0.25;
+    readonly speed: 0.2;
+    readonly cost: 0.15;
+};
+export declare function estimateCost(modelId: string, inputTokens: number, outputTokens: number): number;
+export declare function resolveMaxMatrixBytes(env?: NodeJS.ProcessEnv): number;
+export declare class ModelRouterMatrix {
+    private readonly storePath;
+    private readonly projectRoot;
+    private readonly maxBytes;
+    private readonly weights;
+    private scoreCache;
+    private strategyScoreCache;
+    private _harnessRef?;
+    /** Stable 16-char fingerprint of a task's exact prompt (+ optional verifier).
+     *  Use it so cross-harness-version comparisons measure the SAME task. */
+    static fingerprintTask(prompt: string, verifier?: string): string;
+    /** git commit the running process was built from. Cached for the process
+     *  lifetime (a rebuild/restart picks up the new ref). 'unknown' off-git. */
+    private currentHarnessRef;
+    constructor(projectRoot: string, maxBytes?: number, weights?: Partial<typeof DEFAULT_COMPOSITE_WEIGHTS>);
+    record(entry: BenchmarkRecord): void;
+    getScores(taskType: string): ModelScore[];
+    recommend(taskType: string): string;
+    /**
+     * Raw benchmark records (with provenance), optionally filtered. This is the
+     * query surface the auto-research decision layer (VersionComparison +
+     * AutoResearchStats) reads to compare harness versions task-by-task.
+     *
+     * Compacted `_summary` aggregates are EXCLUDED by default: version comparison
+     * and the Monte-Carlo gate need per-run granularity (bootstrap resamples
+     * individual runs), which summaries don't preserve. Pass includeSummaries to
+     * override. `split` defaults to no filter — callers enforcing the overfitting
+     * guard MUST pass split:'train' for keep/discard and split:'holdout' for
+     * verification.
+     */
+    getRecords(filter?: {
+        taskFingerprint?: string;
+        harnessRef?: string;
+        split?: 'train' | 'holdout';
+        modelId?: string;
+        taskType?: string;
+        benchmarkSource?: string;
+        includeSummaries?: boolean;
+    }): BenchmarkRecord[];
+    /** Distinct taskFingerprints present at a given harness version (train split by
+     *  default). Drives regressionScan's "every task the candidate ran" loop. */
+    taskFingerprintsAt(harnessRef: string, split?: 'train' | 'holdout'): string[];
+    /**
+     * Trust-gated recommendation: returns the top model ONLY when the decision is
+     * data-backed — i.e. the top score has >= minSamples real benchmark
+     * observations. Cold-start defaults carry sampleCount 0, so they (and empty
+     * task types) return null. This is the quality gate for auto-routing: route
+     * only when the matrix has earned the decision, otherwise the caller inherits
+     * a safe default. As MODEL_ROUTER_RECORD accumulates observations, more task
+     * types cross the threshold and begin routing.
+     */
+    recommendTrusted(taskType: string, minSamples?: number, exclude?: string[]): string | null;
+    /**
+     * Thompson-sampling recommendation (explore/exploit). Draws one posterior
+     * sample per model from the task's score distribution and returns the
+     * sampled-argmax — so thinly-sampled models occasionally get a chance and the
+     * matrix stops being self-confirming. OPT-IN only (MODEL_ROUTER_EXPLORATION);
+     * greedy `recommend`/`recommendTrusted` are the defaults. `exclude` (from
+     * MODEL_ROUTER_EXCLUDE) bans models that must never be auto-selected. Returns
+     * null when no eligible model remains → caller inherits its safe default.
+     */
+    recommendThompson(taskType: string, opts?: ThompsonOptions): string | null;
+    /**
+     * The (model × temperature × strategy) ARM scores for a task, ranked best-first.
+     * Same composite scoring as getScores, but grouped by the arm dimension so the
+     * auto-research PM can see WHICH variation — not just which model — has produced
+     * the best work, and assign future arms from data. This is the cortex-bench loop
+     * over strategies, not only models. Each returned ModelScore carries `temperature`
+     * + `strategy`. No cold-start defaults: arms are empirical-only (returns [] when
+     * the task has no real observations) so the PM falls back to its own diversity
+     * heuristics rather than a fabricated recommendation.
+     */
+    getStrategyScores(taskType: string): ModelScore[];
+    /**
+     * Best-scoring arm for a task, or null when the task has no empirical arms yet (or
+     * the top arm has fewer than `minSamples` observations — the same trust gate as
+     * recommendTrusted, so a single lucky run can't anoint a strategy). The PM reads
+     * this to seed the strongest known (model, temperature, strategy) for the next
+     * round while still diversifying the remaining arms.
+     */
+    recommendStrategy(taskType: string, minSamples?: number): ModelScore | null;
+    getMatrix(): ScoringMatrix;
+    getCostEfficiency(modelId: string): CostEfficiencyProfile;
+    private rotateIfNeeded;
+    private loadMainOnly;
+    private compactToSummaries;
+    private loadRecords;
+    private aggregateScores;
+    private collectTaskTypes;
+    private coldStartScores;
+    private groupBy;
+}
+//# sourceMappingURL=ModelRouterMatrix.d.ts.map

package/dist/training/ModelRouterMatrix.d.ts.map

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package/dist/training/ResearchBacklog.d.ts

@@ -0,0 +1,102 @@
+/**
+ * ResearchBacklog — the recursive auto-research task lifecycle.
+ *
+ * Every harness deficiency found during benchmarking is auto-added here as a
+ * tracked, triaged task. The harness identifies its own weaknesses, prioritizes
+ * them (severity × impact × confidence ÷ effort), and walks each through a
+ * lifecycle: open → triaged → in_progress → fixed → verified → closed.
+ *
+ * OVERFITTING GUARD (first-class — see operator note "be wary of overfitting as
+ * recursion progresses"): a deficiency is NOT `verified` just because the fix
+ * passes the task that SURFACED it — that is only `fixed`. It becomes `verified`
+ * only after the fix is confirmed on HELD-OUT tasks it was never tuned against.
+ * The `fixed`→`verified` gap is the guard against the harness gaming its own eval.
+ * (Pair with ModelRouterMatrix's `split:'holdout'` records — keep/discard uses
+ * `train`, verification uses `holdout`.)
+ *
+ * Store: append-only JSONL at `.cortex/research-backlog.jsonl`. Concurrent-safe
+ * for two agents sharing the tree — latest snapshot per `id` wins; never
+ * rewritten in place.
+ */
+export type DeficiencyStatus = 'open' | 'triaged' | 'in_progress' | 'fixed' | 'verified' | 'closed' | 'wont_fix' | 'regressed';
+export type Severity = 'low' | 'medium' | 'high' | 'critical';
+export interface DeficiencyRecord {
+    id: string;
+    title: string;
+    description: string;
+    /** Adapter | Streaming | Caching | Loop control | Routing | Config | Model card | State | Infrastructure | TUI | Other */
+    bugClass: string;
+    status: DeficiencyStatus;
+    severity: Severity;
+    impact: number;
+    effort: number;
+    confidence: number;
+    priorityScore: number;
+    discoveredRound?: string;
+    discoveredRef?: string;
+    affectedModels?: string[];
+    affectedTaskFingerprints?: string[];
+    experimentTag?: string;
+    fixedRef?: string;
+    verifiedRound?: string;
+    notes?: string;
+    createdAt: string;
+    updatedAt: string;
+}
+/**
+ * Triage priority: severity-weighted value per unit effort, scaled by confidence.
+ * `(severityWeight × impact × confidence) / effort`. Higher = fix first.
+ * Confidence scaling is the overfitting/ noise guard at the triage layer —
+ * low-confidence "deficiencies" (could be model noise) sink in priority.
+ */
+export declare function computePriority(severity: Severity, impact: number, effort: number, confidence: number): number;
+export interface NewDeficiency {
+    title: string;
+    description: string;
+    bugClass?: string;
+    severity?: Severity;
+    impact?: number;
+    effort?: number;
+    confidence?: number;
+    discoveredRound?: string;
+    discoveredRef?: string;
+    affectedModels?: string[];
+    affectedTaskFingerprints?: string[];
+    notes?: string;
+}
+export declare class ResearchBacklog {
+    private readonly storePath;
+    constructor(projectRoot: string);
+    /** Stable id derived from the title, so re-finding the same deficiency updates
+     *  rather than duplicating. */
+    static idFor(title: string): string;
+    private append;
+    /** Current state = latest snapshot per id (append-only; last write wins). */
+    list(opts?: {
+        status?: DeficiencyStatus | DeficiencyStatus[];
+        sortByPriority?: boolean;
+    }): DeficiencyRecord[];
+    get(id: string): DeficiencyRecord | undefined;
+    /** Auto-add a found deficiency. Idempotent by title; triage runs automatically
+     *  so `priorityScore` is set on add. */
+    add(d: NewDeficiency): DeficiencyRecord;
+    /** Patch fields + re-snapshot. Recomputes priority when triage fields change. */
+    update(id: string, patch: Partial<DeficiencyRecord>): DeficiencyRecord | undefined;
+    triage(id: string, t: {
+        severity?: Severity;
+        impact?: number;
+        effort?: number;
+        confidence?: number;
+    }): DeficiencyRecord | undefined;
+    /** Highest-priority actionable item (open/triaged) — what the recursion fixes next. */
+    next(): DeficiencyRecord | undefined;
+    markInProgress(id: string, experimentTag: string): DeficiencyRecord | undefined;
+    /** Fix passes the DISCOVERY task — but NOT yet generalized. Do not close here. */
+    markFixed(id: string, fixedRef: string): DeficiencyRecord | undefined;
+    /** OVERFITTING GUARD: only call after the fix holds on HELD-OUT tasks it was not tuned against. */
+    markVerified(id: string, verifiedRound: string): DeficiencyRecord | undefined;
+    close(id: string): DeficiencyRecord | undefined;
+    wontFix(id: string, reason: string): DeficiencyRecord | undefined;
+    reopenRegressed(id: string): DeficiencyRecord | undefined;
+}
+//# sourceMappingURL=ResearchBacklog.d.ts.map

package/dist/training/ResearchBacklog.d.ts.map

@@ -0,0 +1 @@
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