@nexus-ai-nexoralabs/cli 0.1.0

package/dist/storage/migration.d.ts

@@ -0,0 +1,17 @@
+import type { Database as DatabaseType } from 'better-sqlite3';
+import { LogLevel } from '../common/logger.js';
+export interface Migration {
+    version: number;
+    name: string;
+    up(db: DatabaseType): void;
+}
+export declare const MIGRATIONS: Migration[];
+export declare class MigrationRunner {
+    private db;
+    private logger;
+    constructor(db: DatabaseType, logLevel?: LogLevel);
+    ensureMigrationTable(): void;
+    getCurrentVersion(): number;
+    runMigrations(): void;
+}
+//# sourceMappingURL=migration.d.ts.map

package/dist/storage/migration.d.ts.map

@@ -0,0 +1 @@
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package/dist/storage/migration.js

@@ -0,0 +1,354 @@
+import { Logger } from '../common/logger.js';
+export const MIGRATIONS = [
+    {
+        version: 1,
+        name: '001_initial_schema',
+        up(db) {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS projects (
+          id TEXT PRIMARY KEY,
+          name TEXT NOT NULL,
+          description TEXT,
+          workspace_path TEXT NOT NULL,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL
+        );
+
+        CREATE TABLE IF NOT EXISTS conversations (
+          id TEXT PRIMARY KEY,
+          project_id TEXT,
+          title TEXT NOT NULL,
+          mode TEXT NOT NULL DEFAULT 'chat',
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          archived_at TEXT,
+          FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_conversations_project_id ON conversations(project_id);
+
+        CREATE TABLE IF NOT EXISTS messages (
+          id TEXT PRIMARY KEY,
+          conversation_id TEXT NOT NULL,
+          role TEXT NOT NULL,
+          content TEXT NOT NULL,
+          status TEXT NOT NULL DEFAULT 'completed',
+          created_at TEXT NOT NULL,
+          FOREIGN KEY (conversation_id) REFERENCES conversations(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_messages_conversation_id ON messages(conversation_id);
+
+        CREATE TABLE IF NOT EXISTS agent_tasks (
+          id TEXT PRIMARY KEY,
+          project_id TEXT,
+          title TEXT NOT NULL,
+          status TEXT NOT NULL DEFAULT 'queued',
+          plan TEXT,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_agent_tasks_project_id ON agent_tasks(project_id);
+
+        CREATE TABLE IF NOT EXISTS settings (
+          key TEXT PRIMARY KEY,
+          value TEXT NOT NULL,
+          updated_at TEXT NOT NULL
+        );
+      `);
+        },
+    },
+    {
+        version: 2,
+        name: '002_model_registry',
+        up(db) {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS models (
+          id TEXT PRIMARY KEY,
+          name TEXT NOT NULL,
+          provider TEXT NOT NULL DEFAULT 'ollama',
+          version_tag TEXT,
+          capabilities TEXT NOT NULL,
+          context_limit INTEGER DEFAULT 4096,
+          is_available INTEGER NOT NULL DEFAULT 1,
+          updated_at TEXT NOT NULL
+        );
+
+        CREATE TABLE IF NOT EXISTS model_telemetry (
+          id TEXT PRIMARY KEY,
+          model_id TEXT NOT NULL,
+          status TEXT NOT NULL,
+          latency_ms INTEGER NOT NULL,
+          error_category TEXT,
+          created_at TEXT NOT NULL
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_model_telemetry_model_id ON model_telemetry(model_id);
+      `);
+        },
+    },
+    {
+        version: 3,
+        name: '003_rag_engine',
+        up(db) {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS knowledge_collections (
+          id TEXT PRIMARY KEY,
+          name TEXT NOT NULL,
+          scope TEXT NOT NULL DEFAULT 'global',
+          project_id TEXT,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+        );
+
+        CREATE TABLE IF NOT EXISTS documents (
+          id TEXT PRIMARY KEY,
+          collection_id TEXT NOT NULL,
+          filename TEXT NOT NULL,
+          source_path TEXT NOT NULL,
+          mime_type TEXT NOT NULL,
+          content_hash TEXT NOT NULL,
+          current_version INTEGER NOT NULL DEFAULT 1,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          FOREIGN KEY (collection_id) REFERENCES knowledge_collections(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_documents_collection ON documents(collection_id);
+
+        CREATE TABLE IF NOT EXISTS document_versions (
+          id TEXT PRIMARY KEY,
+          document_id TEXT NOT NULL,
+          version INTEGER NOT NULL,
+          content TEXT NOT NULL,
+          created_at TEXT NOT NULL,
+          FOREIGN KEY (document_id) REFERENCES documents(id) ON DELETE CASCADE
+        );
+
+        CREATE TABLE IF NOT EXISTS document_chunks (
+          id TEXT PRIMARY KEY,
+          document_id TEXT NOT NULL,
+          version_id TEXT NOT NULL,
+          collection_id TEXT NOT NULL,
+          chunk_index INTEGER NOT NULL,
+          content TEXT NOT NULL,
+          section TEXT,
+          page_number INTEGER,
+          token_count INTEGER NOT NULL,
+          created_at TEXT NOT NULL,
+          FOREIGN KEY (document_id) REFERENCES documents(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_chunks_collection ON document_chunks(collection_id);
+        CREATE INDEX IF NOT EXISTS idx_chunks_document ON document_chunks(document_id);
+
+        CREATE TABLE IF NOT EXISTS vector_embeddings (
+          id TEXT PRIMARY KEY,
+          chunk_id TEXT NOT NULL UNIQUE,
+          embedding_json TEXT NOT NULL,
+          dimension INTEGER NOT NULL,
+          model_name TEXT NOT NULL,
+          created_at TEXT NOT NULL,
+          FOREIGN KEY (chunk_id) REFERENCES document_chunks(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_embeddings_chunk ON vector_embeddings(chunk_id);
+      `);
+        },
+    },
+    {
+        version: 4,
+        name: '004_agent_state_machine',
+        up(db) {
+            // SQLite does not support renaming columns in older versions.
+            // Recreate agent_tasks with the full P5-A state machine schema.
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS agent_tasks_v2 (
+          id TEXT PRIMARY KEY,
+          project_id TEXT,
+          title TEXT NOT NULL,
+          state TEXT NOT NULL DEFAULT 'created',
+          current_step TEXT,
+          step_status TEXT NOT NULL DEFAULT 'idle',
+          attempt_count INTEGER NOT NULL DEFAULT 0,
+          error_category TEXT,
+          cancelled_at TEXT,
+          completed_at TEXT,
+          plan TEXT,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+        );
+
+        INSERT INTO agent_tasks_v2
+          (id, project_id, title, state, current_step, step_status,
+           attempt_count, error_category, cancelled_at, completed_at,
+           plan, created_at, updated_at)
+        SELECT
+          id, project_id, title,
+          CASE status
+            WHEN 'queued'    THEN 'created'
+            WHEN 'planning'  THEN 'planning'
+            WHEN 'running'   THEN 'executing'
+            WHEN 'completed' THEN 'completed'
+            WHEN 'failed'    THEN 'failed'
+            WHEN 'cancelled' THEN 'cancelled'
+            ELSE 'created'
+          END,
+          NULL, 'idle', 0, NULL, NULL, NULL,
+          plan, created_at, updated_at
+        FROM agent_tasks;
+
+        DROP TABLE agent_tasks;
+        ALTER TABLE agent_tasks_v2 RENAME TO agent_tasks;
+
+        CREATE INDEX IF NOT EXISTS idx_agent_tasks_project_id ON agent_tasks(project_id);
+        CREATE INDEX IF NOT EXISTS idx_agent_tasks_state ON agent_tasks(state);
+      `);
+        },
+    },
+    {
+        version: 5,
+        name: '005_agent_execution_steps',
+        up(db) {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS agent_execution_steps (
+          step_id TEXT PRIMARY KEY,
+          task_id TEXT NOT NULL,
+          sequence INTEGER NOT NULL,
+          step_type TEXT NOT NULL DEFAULT 'tool_execution',
+          status TEXT NOT NULL DEFAULT 'pending',
+          tool_id TEXT,
+          requested_capabilities TEXT,
+          params_json TEXT,
+          attempt_count INTEGER NOT NULL DEFAULT 0,
+          max_attempts INTEGER NOT NULL DEFAULT 3,
+          error_category TEXT,
+          error_message TEXT,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          FOREIGN KEY (task_id) REFERENCES agent_tasks(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_execution_steps_task ON agent_execution_steps(task_id);
+      `);
+        },
+    },
+    {
+        version: 6,
+        name: '006_approval_requests',
+        up(db) {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS approval_requests (
+          approval_id TEXT PRIMARY KEY,
+          task_id TEXT NOT NULL,
+          plan_id TEXT,
+          step_id TEXT NOT NULL,
+          tool_id TEXT NOT NULL,
+          risk_level TEXT NOT NULL,
+          requested_capability TEXT NOT NULL,
+          status TEXT NOT NULL DEFAULT 'pending',
+          created_at TEXT NOT NULL,
+          resolved_at TEXT,
+          expires_at TEXT NOT NULL,
+          decision_reason TEXT,
+          FOREIGN KEY (task_id) REFERENCES agent_tasks(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_approval_requests_task ON approval_requests(task_id);
+        CREATE INDEX IF NOT EXISTS idx_approval_requests_status ON approval_requests(status);
+      `);
+        },
+    },
+    {
+        version: 7,
+        name: '007_coding_agent_runs',
+        up(db) {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS coding_agent_runs (
+          run_id TEXT PRIMARY KEY,
+          task_id TEXT NOT NULL,
+          attempt_count INTEGER NOT NULL DEFAULT 1,
+          max_repair_attempts INTEGER NOT NULL DEFAULT 3,
+          status TEXT NOT NULL DEFAULT 'active',
+          discovered_context_json TEXT,
+          initial_plan_json TEXT,
+          last_validation_command TEXT,
+          last_validation_exit_code INTEGER,
+          last_validation_stdout TEXT,
+          last_validation_stderr TEXT,
+          is_verified INTEGER NOT NULL DEFAULT 0,
+          error_category TEXT,
+          created_at TEXT NOT NULL,
+          updated_at TEXT NOT NULL,
+          FOREIGN KEY (task_id) REFERENCES agent_tasks(id) ON DELETE CASCADE
+        );
+
+        CREATE TABLE IF NOT EXISTS coding_repair_attempts (
+          attempt_id TEXT PRIMARY KEY,
+          run_id TEXT NOT NULL,
+          task_id TEXT NOT NULL,
+          repair_attempt INTEGER NOT NULL,
+          failure_reason TEXT NOT NULL,
+          repair_plan_json TEXT,
+          validation_command TEXT,
+          exit_code INTEGER,
+          success INTEGER NOT NULL DEFAULT 0,
+          diff_summary TEXT,
+          error_category TEXT,
+          created_at TEXT NOT NULL,
+          FOREIGN KEY (run_id) REFERENCES coding_agent_runs(run_id) ON DELETE CASCADE,
+          FOREIGN KEY (task_id) REFERENCES agent_tasks(id) ON DELETE CASCADE
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_coding_runs_task ON coding_agent_runs(task_id);
+        CREATE INDEX IF NOT EXISTS idx_coding_repairs_run ON coding_repair_attempts(run_id);
+      `);
+        },
+    },
+];
+export class MigrationRunner {
+    db;
+    logger;
+    constructor(db, logLevel = 'info') {
+        this.db = db;
+        this.logger = new Logger('MigrationRunner', logLevel);
+    }
+    ensureMigrationTable() {
+        this.db.exec(`
+      CREATE TABLE IF NOT EXISTS schema_migrations (
+        version INTEGER PRIMARY KEY,
+        name TEXT NOT NULL,
+        applied_at TEXT NOT NULL
+      );
+    `);
+    }
+    getCurrentVersion() {
+        this.ensureMigrationTable();
+        const row = this.db.prepare('SELECT MAX(version) as currentVersion FROM schema_migrations').get();
+        return row?.currentVersion ?? 0;
+    }
+    runMigrations() {
+        this.ensureMigrationTable();
+        const currentVersion = this.getCurrentVersion();
+        const pending = MIGRATIONS.filter((m) => m.version > currentVersion).sort((a, b) => a.version - b.version);
+        if (pending.length === 0) {
+            this.logger.info(`Database schema up to date at version ${currentVersion}`);
+            return;
+        }
+        this.logger.info(`Applying ${pending.length} pending database migration(s)`);
+        for (const migration of pending) {
+            this.logger.info(`Running migration v${migration.version}: ${migration.name}`);
+            const executeMigration = this.db.transaction(() => {
+                migration.up(this.db);
+                this.db.prepare('INSERT INTO schema_migrations (version, name, applied_at) VALUES (?, ?, ?)').run(migration.version, migration.name, new Date().toISOString());
+            });
+            executeMigration();
+            this.logger.info(`Migration v${migration.version} successfully applied`);
+        }
+    }
+}
+//# sourceMappingURL=migration.js.map

package/dist/storage/migration.js.map

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package/dist/storage/projectService.d.ts

@@ -0,0 +1,19 @@
+import type { ProjectRepository } from './repositories/projectRepository.js';
+import type { Project } from './repositories/types.js';
+import { LogLevel } from '../common/logger.js';
+export interface CreateProjectDto {
+    id: string;
+    name: string;
+    description?: string | null;
+    workspacePath: string;
+}
+export declare class ProjectService {
+    private projectRepo;
+    private logger;
+    constructor(projectRepo: ProjectRepository, logLevel?: LogLevel);
+    createProject(dto: CreateProjectDto): Project;
+    getProject(id: string): Project | null;
+    listProjects(): Project[];
+    deleteProject(id: string): boolean;
+}
+//# sourceMappingURL=projectService.d.ts.map

package/dist/storage/projectService.d.ts.map

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package/dist/storage/projectService.js

@@ -0,0 +1,29 @@
+import { Logger } from '../common/logger.js';
+export class ProjectService {
+    projectRepo;
+    logger;
+    constructor(projectRepo, logLevel = 'info') {
+        this.projectRepo = projectRepo;
+        this.logger = new Logger('ProjectService', logLevel);
+    }
+    createProject(dto) {
+        this.logger.info(`Creating project '${dto.name}' (${dto.id})`);
+        return this.projectRepo.create({
+            id: dto.id,
+            name: dto.name,
+            description: dto.description ?? null,
+            workspacePath: dto.workspacePath,
+        });
+    }
+    getProject(id) {
+        return this.projectRepo.findById(id);
+    }
+    listProjects() {
+        return this.projectRepo.listAll();
+    }
+    deleteProject(id) {
+        this.logger.info(`Deleting project '${id}'`);
+        return this.projectRepo.deleteById(id);
+    }
+}
+//# sourceMappingURL=projectService.js.map

package/dist/storage/projectService.js.map

@@ -0,0 +1 @@
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package/dist/storage/repositories/agentTaskRepository.d.ts

@@ -0,0 +1,34 @@
+import type { Database } from 'better-sqlite3';
+import type { AgentTask, AgentTaskState, AgentTaskStepStatus } from './types.js';
+export interface UpdateStateParams {
+    state: AgentTaskState;
+    currentStep?: string | null;
+    stepStatus?: AgentTaskStepStatus;
+    attemptCount?: number;
+    errorCategory?: string | null;
+    cancelledAt?: string | null;
+    completedAt?: string | null;
+    plan?: string | null;
+}
+export declare class AgentTaskRepository {
+    private db;
+    constructor(db: Database);
+    create(task: Omit<AgentTask, 'createdAt' | 'updatedAt' | 'state' | 'currentStep' | 'stepStatus' | 'attemptCount' | 'errorCategory' | 'cancelledAt' | 'completedAt'> & {
+        state?: AgentTaskState;
+        currentStep?: string | null;
+        stepStatus?: AgentTaskStepStatus;
+        attemptCount?: number;
+        errorCategory?: string | null;
+        cancelledAt?: string | null;
+        completedAt?: string | null;
+        createdAt?: string;
+        updatedAt?: string;
+    }): AgentTask;
+    findById(id: string): AgentTask | null;
+    listByProject(projectId: string | null): AgentTask[];
+    listAll(): AgentTask[];
+    findByState(state: AgentTaskState): AgentTask[];
+    updateState(id: string, params: UpdateStateParams): boolean;
+    deleteById(id: string): boolean;
+}
+//# sourceMappingURL=agentTaskRepository.d.ts.map

package/dist/storage/repositories/agentTaskRepository.d.ts.map

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package/dist/storage/repositories/agentTaskRepository.js

@@ -0,0 +1,128 @@
+function rowToTask(row) {
+    return {
+        id: row.id,
+        projectId: row.projectId,
+        title: row.title,
+        state: row.state,
+        currentStep: row.currentStep,
+        stepStatus: row.stepStatus,
+        attemptCount: row.attemptCount,
+        errorCategory: row.errorCategory,
+        cancelledAt: row.cancelledAt,
+        completedAt: row.completedAt,
+        plan: row.plan,
+        createdAt: row.createdAt,
+        updatedAt: row.updatedAt,
+    };
+}
+const SELECT_COLS = `
+  id,
+  project_id    AS projectId,
+  title,
+  state,
+  current_step  AS currentStep,
+  step_status   AS stepStatus,
+  attempt_count AS attemptCount,
+  error_category AS errorCategory,
+  cancelled_at  AS cancelledAt,
+  completed_at  AS completedAt,
+  plan,
+  created_at    AS createdAt,
+  updated_at    AS updatedAt
+`;
+export class AgentTaskRepository {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    create(task) {
+        const now = new Date().toISOString();
+        const record = {
+            id: task.id,
+            projectId: task.projectId ?? null,
+            title: task.title,
+            state: task.state ?? 'created',
+            currentStep: task.currentStep ?? null,
+            stepStatus: task.stepStatus ?? 'idle',
+            attemptCount: task.attemptCount ?? 0,
+            errorCategory: task.errorCategory ?? null,
+            cancelledAt: task.cancelledAt ?? null,
+            completedAt: task.completedAt ?? null,
+            plan: task.plan ?? null,
+            createdAt: task.createdAt ?? now,
+            updatedAt: task.updatedAt ?? now,
+        };
+        this.db
+            .prepare(`INSERT INTO agent_tasks
+          (id, project_id, title, state, current_step, step_status,
+           attempt_count, error_category, cancelled_at, completed_at,
+           plan, created_at, updated_at)
+         VALUES
+          (@id, @projectId, @title, @state, @currentStep, @stepStatus,
+           @attemptCount, @errorCategory, @cancelledAt, @completedAt,
+           @plan, @createdAt, @updatedAt)`)
+            .run(record);
+        return record;
+    }
+    findById(id) {
+        const row = this.db
+            .prepare(`SELECT ${SELECT_COLS} FROM agent_tasks WHERE id = ?`)
+            .get(id);
+        return row ? rowToTask(row) : null;
+    }
+    listByProject(projectId) {
+        const rows = projectId
+            ? this.db
+                .prepare(`SELECT ${SELECT_COLS} FROM agent_tasks WHERE project_id = ? ORDER BY updated_at DESC`)
+                .all(projectId)
+            : this.db
+                .prepare(`SELECT ${SELECT_COLS} FROM agent_tasks WHERE project_id IS NULL ORDER BY updated_at DESC`)
+                .all();
+        return rows.map(rowToTask);
+    }
+    listAll() {
+        const rows = this.db
+            .prepare(`SELECT ${SELECT_COLS} FROM agent_tasks ORDER BY updated_at DESC`)
+            .all();
+        return rows.map(rowToTask);
+    }
+    findByState(state) {
+        const rows = this.db
+            .prepare(`SELECT ${SELECT_COLS} FROM agent_tasks WHERE state = ? ORDER BY updated_at DESC`)
+            .all(state);
+        return rows.map(rowToTask);
+    }
+    updateState(id, params) {
+        const now = new Date().toISOString();
+        const result = this.db
+            .prepare(`UPDATE agent_tasks SET
+          state          = @state,
+          current_step   = @currentStep,
+          step_status    = @stepStatus,
+          attempt_count  = @attemptCount,
+          error_category = @errorCategory,
+          cancelled_at   = @cancelledAt,
+          completed_at   = @completedAt,
+          plan           = COALESCE(@plan, plan),
+          updated_at     = @updatedAt
+         WHERE id = @id`)
+            .run({
+            id,
+            state: params.state,
+            currentStep: params.currentStep ?? null,
+            stepStatus: params.stepStatus ?? 'idle',
+            attemptCount: params.attemptCount ?? 0,
+            errorCategory: params.errorCategory ?? null,
+            cancelledAt: params.cancelledAt ?? null,
+            completedAt: params.completedAt ?? null,
+            plan: params.plan ?? null,
+            updatedAt: now,
+        });
+        return result.changes > 0;
+    }
+    deleteById(id) {
+        const result = this.db.prepare('DELETE FROM agent_tasks WHERE id = ?').run(id);
+        return result.changes > 0;
+    }
+}
+//# sourceMappingURL=agentTaskRepository.js.map

package/dist/storage/repositories/agentTaskRepository.js.map

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package/dist/storage/repositories/approvalRepository.d.ts

@@ -0,0 +1,20 @@
+/**
+ * NEXUS AI — Approval Repository
+ *
+ * Provides SQLite persistence for P5-F human approval requests.
+ */
+import type { Database } from 'better-sqlite3';
+import type { ApprovalRequest, ApprovalStatus } from '../../tools/approvalTypes.js';
+export declare class ApprovalRepository {
+    private db;
+    constructor(db: Database);
+    create(request: ApprovalRequest): ApprovalRequest;
+    findById(approvalId: string): ApprovalRequest | null;
+    findByTaskId(taskId: string): ApprovalRequest[];
+    findPendingForStep(taskId: string, stepId: string): ApprovalRequest | null;
+    listPending(): ApprovalRequest[];
+    updateStatus(approvalId: string, status: ApprovalStatus, resolvedAt?: string, decisionReason?: string): boolean;
+    expireStaleApprovals(nowIso: string): number;
+    cancelPendingForTask(taskId: string, nowIso: string, reason?: string): number;
+}
+//# sourceMappingURL=approvalRepository.d.ts.map

package/dist/storage/repositories/approvalRepository.d.ts.map

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