@nextage/omics-lib 1.0.16 → 1.0.17
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/omics/models/genotype.d.ts +2 -1
- package/build/omics/models/genotype.d.ts.map +1 -1
- package/build/omics/models/genotype.js +2 -2
- package/build/omics/models/genotype.js.map +1 -1
- package/build/omics/models/sample.d.ts +2 -1
- package/build/omics/models/sample.d.ts.map +1 -1
- package/build/omics/models/sample.js +2 -2
- package/build/omics/models/sample.js.map +1 -1
- package/build/omics/models/variant.d.ts +2 -1
- package/build/omics/models/variant.d.ts.map +1 -1
- package/build/omics/models/variant.js +2 -2
- package/build/omics/models/variant.js.map +1 -1
- package/package.json +1 -1
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@@ -1,5 +1,6 @@
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import mongoose from 'mongoose';
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import { IGenotype } from '../types';
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import { AppData } from '../../types';
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export interface GenotypeAttrs extends IGenotype {
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createdAt?: Date;
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updatedAt?: Date;
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@@ -15,5 +16,5 @@ export interface GenotypeDoc extends mongoose.Document {
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export interface GenotypeModel extends mongoose.Model<GenotypeDoc> {
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build(attrs: GenotypeAttrs): GenotypeDoc;
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}
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export declare function createGenotypeModel(): GenotypeModel;
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export declare function createGenotypeModel(APP: AppData): GenotypeModel;
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//# sourceMappingURL=genotype.d.ts.map
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@@ -1 +1 @@
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{"version":3,"file":"genotype.d.ts","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,SAAS,EAAE,MAAkB,UAAU,CAAC;
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{"version":3,"file":"genotype.d.ts","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,SAAS,EAAE,MAAkB,UAAU,CAAC;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AAEtC,MAAM,WAAW,aAAc,SAAQ,SAAS;IAC9C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAY,SAAQ,QAAQ,CAAC,QAAQ;IACpD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAc,SAAQ,QAAQ,CAAC,KAAK,CAAC,WAAW,CAAC;IAChE,KAAK,CAAC,KAAK,EAAE,aAAa,GAAG,WAAW,CAAC;CAC1C;AAgCD,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,OAAO,iBAQ/C"}
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@@ -30,11 +30,11 @@ schema.index({ variantId: 1 }, { name: 'variantid_idx' });
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schema.index({ sampleId: 1 }, { name: 'sampled_idx' });
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schema.set('versionKey', 'version');
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schema.plugin(mongoose_update_if_current_1.updateIfCurrentPlugin);
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function createGenotypeModel() {
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function createGenotypeModel(APP) {
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schema.statics.build = (attrs) => {
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return new Genotype(attrs);
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};
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const Genotype =
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const Genotype = APP.mongoose.model('Genotype', schema);
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return Genotype;
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}
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// schema.statics.build = (attrs: GenotypeAttrs) => {
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{"version":3,"file":"genotype.js","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":";;;;;
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{"version":3,"file":"genotype.js","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":";;;;;AAqDA,kDAQC;AA7DD,wDAAiD;AACjD,2EAAmE;AAsBnE,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,SAAS,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,QAAQ,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,GAAG,EAAiB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,OAAO,EAAa,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE;IACtC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;CACnC,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;AAC/F,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,EAAe,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAC;AACvE,MAAM,CAAC,KAAK,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAgB,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC;AAErE,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,SAAgB,mBAAmB,CAAC,GAAY;IAE9C,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAoB,EAAE,EAAE;QAC9C,OAAO,IAAI,QAAQ,CAAC,KAAK,CAAC,CAAC;IAC7B,CAAC,CAAC;IAEF,MAAM,QAAQ,GAAG,GAAG,CAAC,QAAS,CAAC,KAAK,CAA6B,UAAU,EAAE,MAAM,CAAC,CAAC;IACrF,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,qDAAqD;AACrD,gCAAgC;AAChC,KAAK;AAEL,0FAA0F"}
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@@ -1,5 +1,6 @@
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import mongoose from 'mongoose';
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import { ISample } from '../types';
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import { AppData } from '../../types';
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export interface SampleAttrs extends ISample {
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createdAt?: Date;
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updatedAt?: Date;
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export interface SampleModel extends mongoose.Model<SampleDoc> {
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build(attrs: SampleAttrs): SampleDoc;
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}
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export declare function createSampleModel(): SampleModel;
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export declare function createSampleModel(APP: AppData): SampleModel;
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//# sourceMappingURL=sample.d.ts.map
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{"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../../src/omics/models/sample.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,OAAO,EAAE,MAAoB,UAAU,CAAC;
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{"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../../src/omics/models/sample.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,OAAO,EAAE,MAAoB,UAAU,CAAC;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AAEtC,MAAM,WAAW,WAAY,SAAQ,OAAO;IAC1C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,SAAU,SAAQ,QAAQ,CAAC,QAAQ;IAClD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAY,SAAQ,QAAQ,CAAC,KAAK,CAAC,SAAS,CAAC;IAC5D,KAAK,CAAC,KAAK,EAAE,WAAW,GAAG,SAAS,CAAC;CACtC;AAsCD,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,OAAO,eAQ7C"}
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// };
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schema.index({ sampleId: 1 }, { name: 'sampleid_uidx', unique: true });
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schema.index({ sequencingSampleId: 1 }, { name: 'seqsampleid_idx' });
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function createSampleModel() {
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function createSampleModel(APP) {
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schema.statics.build = (attrs) => {
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return new Sample(attrs);
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};
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const Sample =
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const Sample = APP.mongoose.model('Sample', schema);
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return Sample;
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}
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// indice unico
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{"version":3,"file":"sample.js","sourceRoot":"","sources":["../../../src/omics/models/sample.ts"],"names":[],"mappings":";;;;;
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{"version":3,"file":"sample.js","sourceRoot":"","sources":["../../../src/omics/models/sample.ts"],"names":[],"mappings":";;;;;AA2DA,8CAQC;AAnED,wDAAiD;AACjD,2EAAmE;AAsBnE,MAAM,cAAc,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAAC;IACzC,SAAS,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IAC3B,OAAO,EAAI,EAAE,IAAI,EAAE,MAAM,EAAE;IAC3B,OAAO,EAAI,EAAE,IAAI,EAAE,MAAM,EAAE;IAC3B,SAAS,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;CAC5B,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAC;AAEnB,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,QAAQ,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE;IAClE,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE;IAClE,QAAQ,EAAY,EAAE,IAAI,EAAE,cAAc,EAAE;IAC5C,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;CACnC,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,mDAAmD;AACnD,8BAA8B;AAC9B,KAAK;AAEL,MAAM,CAAC,KAAK,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAY,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;AACjF,MAAM,CAAC,KAAK,CAAC,EAAE,kBAAkB,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,iBAAiB,EAAE,CAAC,CAAC;AAErE,SAAgB,iBAAiB,CAAC,GAAY;IAE5C,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAkB,EAAE,EAAE;QAC5C,OAAO,IAAI,MAAM,CAAC,KAAK,CAAC,CAAC;IAC3B,CAAC,CAAC;IAEF,MAAM,MAAM,GAAG,GAAG,CAAC,QAAS,CAAC,KAAK,CAAyB,QAAQ,EAAE,MAAM,CAAC,CAAC;IAC7E,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,eAAe"}
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export interface VariantAttrs extends IVariant {
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export declare function createVariantModel(APP: AppData): VariantModel;
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//# sourceMappingURL=variant.d.ts.map
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{"version":3,"file":"variant.d.ts","sourceRoot":"","sources":["../../../src/omics/models/variant.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,QAAQ,EAAE,MAAkB,UAAU,CAAC;
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{"version":3,"file":"variant.d.ts","sourceRoot":"","sources":["../../../src/omics/models/variant.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,QAAQ,EAAE,MAAkB,UAAU,CAAC;AAChD,OAAO,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AAEtC,MAAM,WAAW,YAAa,SAAQ,QAAQ;IAC5C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,UAAW,SAAQ,QAAQ,CAAC,QAAQ;IACnD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,YAAa,SAAQ,QAAQ,CAAC,KAAK,CAAC,UAAU,CAAC;IAC9D,KAAK,CAAC,KAAK,EAAE,YAAY,GAAG,UAAU,CAAC;CACxC;AAiDD,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,OAAO,gBAQ9C"}
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// schema.statics.build = (attrs: VariantAttrs) => {
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// };
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{"version":3,"file":"variant.js","sourceRoot":"","sources":["../../../src/omics/models/variant.ts"],"names":[],"mappings":";;;;;
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