@nextage/omics-lib 1.0.12 → 1.0.15

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1 +1 @@
1
- {"version":3,"file":"genotype.d.ts","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,SAAS,EAAE,MAAkB,UAAU,CAAC;AAEjD,MAAM,WAAW,aAAc,SAAQ,SAAS;IAC9C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAY,SAAQ,QAAQ,CAAC,QAAQ;IACpD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAc,SAAQ,QAAQ,CAAC,KAAK,CAAC,WAAW,CAAC;IAChE,KAAK,CAAC,KAAK,EAAE,aAAa,GAAG,WAAW,CAAC;CAC1C;AAsCD,eAAO,MAAM,QAAQ,eAAiE,CAAC"}
1
+ {"version":3,"file":"genotype.d.ts","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAuB,UAAU,CAAC;AAEjD,OAAO,EAAE,SAAS,EAAE,MAAkB,UAAU,CAAC;AAEjD,MAAM,WAAW,aAAc,SAAQ,SAAS;IAC9C,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,CAAC,EAAI,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,WAAY,SAAQ,QAAQ,CAAC,QAAQ;IACpD,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,OAAO,EAAK,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAc,SAAQ,QAAQ,CAAC,KAAK,CAAC,WAAW,CAAC;IAChE,KAAK,CAAC,KAAK,EAAE,aAAa,GAAG,WAAW,CAAC;CAC1C;AAoCD,eAAO,MAAM,QAAQ,eAAiE,CAAC"}
@@ -34,4 +34,5 @@ schema.statics.build = (attrs) => {
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  return new exports.Genotype(attrs);
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  };
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  exports.Genotype = mongoose_1.default.model('Genotype', schema);
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+ console.log(`created Genotype model`);
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  //# sourceMappingURL=genotype.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"genotype.js","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":";;;;;;AAAA,wDAAiD;AACjD,2EAAmE;AAqBnE,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,SAAS,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,QAAQ,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,GAAG,EAAiB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,OAAO,EAAa,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE;IACtC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;CACnC,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;AAC/F,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,EAAe,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAC;AACvE,MAAM,CAAC,KAAK,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAgB,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC;AAIrE,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAoB,EAAE,EAAE;IAC9C,OAAO,IAAI,gBAAQ,CAAC,KAAK,CAAC,CAAC;AAC7B,CAAC,CAAC;AAEW,QAAA,QAAQ,GAAG,kBAAQ,CAAC,KAAK,CAA6B,UAAU,EAAE,MAAM,CAAC,CAAC"}
1
+ {"version":3,"file":"genotype.js","sourceRoot":"","sources":["../../../src/omics/models/genotype.ts"],"names":[],"mappings":";;;;;;AAAA,wDAAiD;AACjD,2EAAmE;AAqBnE,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,SAAS,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,QAAQ,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IACpD,kBAAkB,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,GAAG,EAAiB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,EAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,OAAO,EAAa,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE;IACtC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;IAClC,SAAS,EAAW,EAAE,IAAI,EAAE,IAAI,EAAE;CACnC,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;AAC/F,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,EAAe,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAC;AACvE,MAAM,CAAC,KAAK,CAAC,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAgB,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC;AAErE,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAoB,EAAE,EAAE;IAC9C,OAAO,IAAI,gBAAQ,CAAC,KAAK,CAAC,CAAC;AAC7B,CAAC,CAAC;AAEW,QAAA,QAAQ,GAAG,kBAAQ,CAAC,KAAK,CAA6B,UAAU,EAAE,MAAM,CAAC,CAAC;AAEvF,OAAO,CAAC,GAAG,CAAC,wBAAwB,CAAC,CAAC"}
@@ -46,4 +46,5 @@ schema.statics.build = (attrs) => {
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  return new exports.Variant(attrs);
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  };
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  exports.Variant = mongoose_1.default.model('Variant', schema);
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+ console.log(`created Variant model`);
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  //# sourceMappingURL=variant.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"variant.js","sourceRoot":"","sources":["../../../src/omics/models/variant.ts"],"names":[],"mappings":";;;;;;AAAA,wDAAiD;AACjD,2EAAmE;AAqBnE,MAAM,gBAAgB,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAAC;IAC3C,IAAI,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,WAAW,EAAM,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,UAAU,EAAO,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,KAAK,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,KAAK,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,UAAU,EAAO,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,eAAe,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,MAAM,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,IAAI,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;CAClC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAC;AAEnB,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,SAAS,EAAO,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IAChD,KAAK,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,GAAG,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,GAAG,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,GAAG,EAAa,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE;IAClC,IAAI,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,cAAc,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,WAAW,EAAK,EAAE,IAAI,EAAE,gBAAgB,EAAE;IAC1C,SAAS,EAAO,EAAE,IAAI,EAAE,IAAI,EAAE;IAC9B,SAAS,EAAO,EAAE,IAAI,EAAE,IAAI,EAAE;IAC9B,SAAS,EAAO,EAAE,IAAI,EAAE,IAAI,EAAE;CAC/B,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,EAAW,EAAE,IAAI,EAAE,gBAAgB,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;AAClF,MAAM,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,EAAO,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAC;AACnE,MAAM,CAAC,KAAK,CAAC,EAAE,kBAAkB,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,qBAAqB,EAAE,CAAC,CAAC;AAEzE,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAmB,EAAE,EAAE;IAC7C,OAAO,IAAI,eAAO,CAAC,KAAK,CAAC,CAAC;AAC5B,CAAC,CAAC;AAEW,QAAA,OAAO,GAAG,kBAAQ,CAAC,KAAK,CAA2B,SAAS,EAAE,MAAM,CAAC,CAAC"}
1
+ {"version":3,"file":"variant.js","sourceRoot":"","sources":["../../../src/omics/models/variant.ts"],"names":[],"mappings":";;;;;;AAAA,wDAAiD;AACjD,2EAAmE;AAqBnE,MAAM,gBAAgB,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAAC;IAC3C,IAAI,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,WAAW,EAAM,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,UAAU,EAAO,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,KAAK,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,KAAK,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,UAAU,EAAO,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,eAAe,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,MAAM,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE;IACjC,IAAI,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;CAClC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAC;AAEnB,MAAM,MAAM,GAAG,IAAI,kBAAQ,CAAC,MAAM,CAChC;IACE,SAAS,EAAO,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE;IAChD,KAAK,EAAW,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,GAAG,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,GAAG,EAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,GAAG,EAAa,EAAE,IAAI,EAAE,CAAC,MAAM,CAAC,EAAE;IAClC,IAAI,EAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,cAAc,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;IAChC,WAAW,EAAK,EAAE,IAAI,EAAE,gBAAgB,EAAE;IAC1C,SAAS,EAAO,EAAE,IAAI,EAAE,IAAI,EAAE;IAC9B,SAAS,EAAO,EAAE,IAAI,EAAE,IAAI,EAAE;IAC9B,SAAS,EAAO,EAAE,IAAI,EAAE,IAAI,EAAE;CAC/B,EACD;IACE,MAAM,EAAE;QACN,SAAS,CAAC,GAAG,EAAE,GAAQ;YACrB,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,CAAC;YACjB,OAAO,GAAG,CAAC,GAAG,CAAC;QACjB,CAAC;KACF;CACF,CACF,CAAC;AAEF,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,EAAW,EAAE,IAAI,EAAE,gBAAgB,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;AAClF,MAAM,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,EAAO,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAC;AACnE,MAAM,CAAC,KAAK,CAAC,EAAE,kBAAkB,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,qBAAqB,EAAE,CAAC,CAAC;AAEzE,MAAM,CAAC,GAAG,CAAC,YAAY,EAAE,SAAS,CAAC,CAAC;AACpC,MAAM,CAAC,MAAM,CAAC,kDAAqB,CAAC,CAAC;AAErC,MAAM,CAAC,OAAO,CAAC,KAAK,GAAG,CAAC,KAAmB,EAAE,EAAE;IAC7C,OAAO,IAAI,eAAO,CAAC,KAAK,CAAC,CAAC;AAC5B,CAAC,CAAC;AAEW,QAAA,OAAO,GAAG,kBAAQ,CAAC,KAAK,CAA2B,SAAS,EAAE,MAAM,CAAC,CAAC;AACnF,OAAO,CAAC,GAAG,CAAC,uBAAuB,CAAC,CAAC"}
@@ -21,6 +21,10 @@ export declare class TSVParser {
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  *
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  */
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  checkBulkSize(): Promise<void>;
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+ /**
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+ *
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+ */
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+ saveData(): Promise<void>;
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  /**
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  *
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  * @param vaf
@@ -1 +1 @@
1
- {"version":3,"file":"tsv-parser.d.ts","sourceRoot":"","sources":["../../../src/omics/services/tsv-parser.ts"],"names":[],"mappings":"AAKA,OAAO,EAAY,aAAa,EAAE,MAAoB,oBAAoB,CAAC;AAC3E,OAAO,EAAU,WAAW,EAAE,MAAwB,kBAAkB,CAAC;AACzE,OAAO,EAAW,YAAY,EAAE,MAAsB,mBAAmB,CAAC;AAI1E,qBAAa,SAAS;IAEpB,OAAO,CAAC,QAAQ,CAAC,UAAU,CAA+C;IAC1E,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgD;IAC1E,OAAO,CAAC,QAAQ,CAAC,WAAW,CAA8C;IAE1E,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAY;gBAEzB,QAAQ,GAAE,MAAa;IAKnC;;;OAGG;IACG,KAAK,CAAC,IAAI,EAAE,MAAM;IAyBxB;;;OAGG;IACG,QAAQ,CAAC,GAAG,EAAE,GAAG;IAgCvB;;OAEG;IACG,aAAa;IAcnB;;;;OAIG;IACH,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS;IAU3C;;;;;OAKG;IACH,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG;QAAE,EAAE,CAAC,EAAE,MAAM,CAAC;QAAC,GAAG,CAAC,EAAE,MAAM,CAAA;KAAC;IAgB5E;;;;OAIG;IACH,gBAAgB,CAAC,GAAG,EAAE,MAAM,CAAC,MAAM,EAAC,MAAM,CAAC;;;;;CA2E5C"}
1
+ {"version":3,"file":"tsv-parser.d.ts","sourceRoot":"","sources":["../../../src/omics/services/tsv-parser.ts"],"names":[],"mappings":"AAKA,OAAO,EAAY,aAAa,EAAE,MAAoB,oBAAoB,CAAC;AAC3E,OAAO,EAAU,WAAW,EAAE,MAAwB,kBAAkB,CAAC;AACzE,OAAO,EAAW,YAAY,EAAE,MAAsB,mBAAmB,CAAC;AAI1E,qBAAa,SAAS;IAEpB,OAAO,CAAC,QAAQ,CAAC,UAAU,CAA+C;IAC1E,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgD;IAC1E,OAAO,CAAC,QAAQ,CAAC,WAAW,CAA8C;IAE1E,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAY;gBAEzB,QAAQ,GAAE,MAAa;IAKnC;;;OAGG;IACG,KAAK,CAAC,IAAI,EAAE,MAAM;IA2BxB;;;OAGG;IACG,QAAQ,CAAC,GAAG,EAAE,GAAG;IAgCvB;;OAEG;IACG,aAAa;IAMnB;;OAEG;IACG,QAAQ;IAkBd;;;;OAIG;IACH,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS;IAU3C;;;;;OAKG;IACH,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG;QAAE,EAAE,CAAC,EAAE,MAAM,CAAC;QAAC,GAAG,CAAC,EAAE,MAAM,CAAA;KAAC;IAgB5E;;;;OAIG;IACH,gBAAgB,CAAC,GAAG,EAAE,MAAM,CAAC,MAAM,EAAC,MAAM,CAAC;;;;;CA2E5C"}
@@ -37,6 +37,7 @@ class TSVParser {
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  await this.parseRow(row);
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  await this.checkBulkSize();
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  }
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+ await this.saveData();
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  }
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  /**
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  *
@@ -73,12 +74,23 @@ class TSVParser {
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  *
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  */
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  async checkBulkSize() {
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- if (this.variantOps.length >= this.bulkSize) {
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+ if (this.variantOps.length >= this.bulkSize)
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+ await this.saveData();
79
+ }
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+ /**
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+ *
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+ */
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+ async saveData() {
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+ if (this.variantOps.length) {
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  await variant_1.Variant.bulkWrite(this.variantOps);
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- await sample_1.Sample.bulkWrite(this.sampleOps);
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- await genotype_1.Genotype.bulkWrite(this.genotypeOps);
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  this.variantOps.length = 0;
87
+ }
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+ if (this.sampleOps.length) {
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+ await sample_1.Sample.bulkWrite(this.sampleOps);
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  this.sampleOps.length = 0;
91
+ }
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+ if (this.genotypeOps.length) {
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+ await genotype_1.Genotype.bulkWrite(this.genotypeOps);
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  this.genotypeOps.length = 0;
83
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  }
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  }
@@ -1 +1 @@
1
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
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2
  "name": "@nextage/omics-lib",
3
- "version": "1.0.12",
3
+ "version": "1.0.15",
4
4
  "main": "./build/index.js",
5
5
  "types": "./build/index.d.ts",
6
6
  "files": [