@neurodock/cli 0.1.2 → 0.4.3

package/dist/commands/plugin.js.map

@@ -0,0 +1 @@
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package/dist/commands/profile.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"profile.d.ts","sourceRoot":"","sources":["../../src/commands/profile.ts"],"names":[],"mappings":"AAIA,OAAO,EAEL,KAAK,gBAAgB,EACtB,MAAM,yBAAyB,CAAC;AAEjC,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,MAAM,EAAE,gBAAgB,CAAC;IAClC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;CAC3B;AAED,wBAAsB,kBAAkB,IAAI,OAAO,CAAC,cAAc,CAAC,CAsBlE;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;CAC3B;AAED,wBAAsB,cAAc,IAAI,OAAO,CAAC,UAAU,CAAC,CAQ1D"}

package/dist/commands/profile.js

@@ -2,7 +2,7 @@ import { existsSync } from "node:fs";
 import { readEnv } from "../lib/env.js";
 import { profilePath } from "../lib/paths.js";
 import { loadProfileFromFile, renderResolvedYaml } from "../profile/loader.js";
-import { validateProfile } from "../profile/validator.js";
+import { validateProfile, } from "../profile/validator.js";
 export async function runProfileValidate() {
     const env = readEnv();
     const p = profilePath(env);
@@ -10,7 +10,16 @@ export async function runProfileValidate() {
         return {
             path: p,
             missing: true,
-            result: { valid: false, violations: [{ path: "/", message: "profile file does not exist", keyword: "missing" }] },
+            result: {
+                valid: false,
+                violations: [
+                    {
+                        path: "/",
+                        message: "profile file does not exist",
+                        keyword: "missing",
+                    },
+                ],
+            },
         };
     }
     const loaded = loadProfileFromFile(p);

package/dist/commands/profile.js.map

@@ -1 +1 @@
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+{"version":3,"file":"profile.js","sourceRoot":"","sources":["../../src/commands/profile.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AACxC,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAC9C,OAAO,EAAE,mBAAmB,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC/E,OAAO,EACL,eAAe,GAEhB,MAAM,yBAAyB,CAAC;AAQjC,MAAM,CAAC,KAAK,UAAU,kBAAkB;IACtC,MAAM,GAAG,GAAG,OAAO,EAAE,CAAC;IACtB,MAAM,CAAC,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;IAC3B,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;QACnB,OAAO;YACL,IAAI,EAAE,CAAC;YACP,OAAO,EAAE,IAAI;YACb,MAAM,EAAE;gBACN,KAAK,EAAE,KAAK;gBACZ,UAAU,EAAE;oBACV;wBACE,IAAI,EAAE,GAAG;wBACT,OAAO,EAAE,6BAA6B;wBACtC,OAAO,EAAE,SAAS;qBACnB;iBACF;aACF;SACF,CAAC;IACJ,CAAC;IACD,MAAM,MAAM,GAAG,mBAAmB,CAAC,CAAC,CAAC,CAAC;IACtC,MAAM,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;IAC3C,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC;AAC7C,CAAC;AAQD,MAAM,CAAC,KAAK,UAAU,cAAc;IAClC,MAAM,GAAG,GAAG,OAAO,EAAE,CAAC;IACtB,MAAM,CAAC,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;IAC3B,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;QACnB,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC;IAC9C,CAAC;IACD,MAAM,MAAM,GAAG,mBAAmB,CAAC,CAAC,CAAC,CAAC;IACtC,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,EAAE,kBAAkB,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;AAChF,CAAC"}

package/dist/commands/uninstall.d.ts

@@ -0,0 +1,36 @@
+import type { ClientId } from "../types.js";
+import { readEnv } from "../lib/env.js";
+export interface UninstallOptions {
+    readonly client: ClientId | "all";
+    readonly dryRun: boolean;
+    readonly yes: boolean;
+    readonly purge: boolean;
+}
+export interface UninstallClientDiff {
+    readonly client: ClientId;
+    readonly path: string;
+    readonly action: "removed" | "no-change" | "skip" | "untouched";
+    readonly removedKeys: ReadonlyArray<string>;
+    readonly preservedKeys: ReadonlyArray<string>;
+    readonly reason?: string;
+}
+export interface UninstallDataDiff {
+    readonly profilePath: string;
+    readonly profileExists: boolean;
+    readonly graphPath: string;
+    readonly graphExists: boolean;
+    readonly profileWillDelete: boolean;
+    readonly graphWillDelete: boolean;
+}
+export interface UninstallRunResult {
+    readonly clients: ReadonlyArray<UninstallClientDiff>;
+    readonly data: UninstallDataDiff;
+    readonly applied: boolean;
+    readonly messages: ReadonlyArray<string>;
+}
+export interface UninstallDependencies {
+    readonly envOverrides?: Parameters<typeof readEnv>[0];
+    readonly confirmDelete?: (target: "profile" | "graph", path: string) => Promise<boolean>;
+}
+export declare function runUninstall(options: UninstallOptions, deps?: UninstallDependencies): Promise<UninstallRunResult>;
+//# sourceMappingURL=uninstall.d.ts.map

package/dist/commands/uninstall.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/uninstall.js

@@ -0,0 +1,188 @@
+import { existsSync, mkdirSync, readFileSync, rmSync, writeFileSync, } from "node:fs";
+import { dirname, join } from "node:path";
+import prompts from "prompts";
+import { readEnv } from "../lib/env.js";
+import { detectClients, profileDir, profilePath, } from "../lib/paths.js";
+import { adapterFor } from "../clients/index.js";
+import { parseJsonSafely } from "../lib/json-patch.js";
+const NEURODOCK_PREFIX = "neurodock-";
+export async function runUninstall(options, deps = {}) {
+    const env = readEnv(deps.envOverrides ?? {});
+    const messages = [];
+    const detections = detectClients(env);
+    const targets = pickTargets(detections, options.client).filter((t) => t.exists);
+    const clientDiffs = [];
+    for (const target of targets) {
+        clientDiffs.push(diffClient(target));
+    }
+    const dir = profileDir(env);
+    const pPath = profilePath(env);
+    const gPath = join(dir, "cognitive-graph.sqlite");
+    const profileExists = existsSync(pPath);
+    const graphExists = existsSync(gPath);
+    let profileWillDelete = false;
+    let graphWillDelete = false;
+    if (options.purge) {
+        profileWillDelete = profileExists;
+        graphWillDelete = graphExists;
+    }
+    else if (!options.yes && !options.dryRun) {
+        const confirm = deps.confirmDelete ?? defaultConfirm;
+        if (profileExists)
+            profileWillDelete = await confirm("profile", pPath);
+        if (graphExists)
+            graphWillDelete = await confirm("graph", gPath);
+    }
+    // --yes without --purge: both remain false (preserve data).
+    const data = {
+        profilePath: pPath,
+        profileExists,
+        graphPath: gPath,
+        graphExists,
+        profileWillDelete,
+        graphWillDelete,
+    };
+    messages.push(...formatDiff(clientDiffs, data));
+    if (options.dryRun) {
+        return {
+            clients: clientDiffs,
+            data,
+            applied: false,
+            messages: ["Dry run. No changes written.", ...messages],
+        };
+    }
+    for (const d of clientDiffs) {
+        if (d.action === "removed") {
+            applyClientDiff(d);
+            messages.push(`Removed NeuroDock entries from ${d.client} at ${d.path}.`);
+        }
+        else if (d.action === "untouched") {
+            messages.push(`${d.client} at ${d.path}: no NeuroDock entries to remove.`);
+        }
+        else if (d.action === "skip") {
+            messages.push(`Skipped ${d.client} at ${d.path}: ${d.reason ?? "parse error"}.`);
+        }
+    }
+    if (profileWillDelete) {
+        try {
+            rmSync(pPath, { force: true });
+            messages.push(`Deleted ${pPath}.`);
+        }
+        catch (err) {
+            messages.push(`Failed to delete ${pPath}: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    else if (profileExists) {
+        messages.push(`Preserved ${pPath}.`);
+    }
+    if (graphWillDelete) {
+        try {
+            rmSync(gPath, { force: true });
+            messages.push(`Deleted ${gPath}.`);
+        }
+        catch (err) {
+            messages.push(`Failed to delete ${gPath}: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    else if (graphExists) {
+        messages.push(`Preserved ${gPath}.`);
+    }
+    return { clients: clientDiffs, data, applied: true, messages };
+}
+function pickTargets(detections, client) {
+    if (client === "all")
+        return detections;
+    return detections.filter((d) => d.id === client);
+}
+function diffClient(target) {
+    const raw = readFileSync(target.path, "utf8");
+    const parsed = parseJsonSafely(raw);
+    if (!parsed.ok) {
+        return {
+            client: target.id,
+            path: target.path,
+            action: "skip",
+            removedKeys: [],
+            preservedKeys: [],
+            reason: `existing config is not valid JSON: ${parsed.error}`,
+        };
+    }
+    const existing = (parsed.value ?? {});
+    const servers = existing.mcpServers ?? {};
+    const removedKeys = Object.keys(servers).filter((k) => k.startsWith(NEURODOCK_PREFIX));
+    const preservedKeys = Object.keys(servers).filter((k) => !k.startsWith(NEURODOCK_PREFIX));
+    if (removedKeys.length === 0) {
+        return {
+            client: target.id,
+            path: target.path,
+            action: "untouched",
+            removedKeys: [],
+            preservedKeys,
+        };
+    }
+    return {
+        client: target.id,
+        path: target.path,
+        action: "removed",
+        removedKeys,
+        preservedKeys,
+    };
+}
+function applyClientDiff(diff) {
+    const adapter = adapterFor(diff.client);
+    const raw = readFileSync(diff.path, "utf8");
+    const parsed = parseJsonSafely(raw);
+    if (!parsed.ok)
+        return;
+    const existing = (parsed.value ?? {});
+    const servers = { ...(existing.mcpServers ?? {}) };
+    for (const key of diff.removedKeys) {
+        delete servers[key];
+    }
+    const baseWithoutServers = { ...existing };
+    delete baseWithoutServers["mcpServers"];
+    const shaped = adapter.shapeConfig(baseWithoutServers, servers);
+    mkdirSync(dirname(diff.path), { recursive: true });
+    writeFileSync(diff.path, `${JSON.stringify(shaped, null, 2)}\n`, "utf8");
+}
+async function defaultConfirm(target, path) {
+    const label = target === "profile"
+        ? `Delete profile at ${path}?`
+        : `Delete cognitive graph at ${path}?`;
+    const response = await prompts({
+        type: "confirm",
+        name: "ok",
+        message: label,
+        initial: false,
+    });
+    return response.ok === true;
+}
+function formatDiff(clients, data) {
+    const out = [];
+    out.push("Planned changes:");
+    if (clients.length === 0) {
+        out.push("  (no client configs detected)");
+    }
+    for (const d of clients) {
+        out.push(`Client ${d.client} (${d.action}): ${d.path}`);
+        for (const k of d.removedKeys)
+            out.push(`  - mcpServers.${k}`);
+        for (const k of d.preservedKeys)
+            out.push(`  = mcpServers.${k} (preserved)`);
+        if (d.reason)
+            out.push(`  reason: ${d.reason}`);
+    }
+    out.push("Data files:");
+    out.push(`  profile: ${data.profilePath} (${data.profileExists
+        ? data.profileWillDelete
+            ? "will delete"
+            : "preserve"
+        : "absent"})`);
+    out.push(`  graph:   ${data.graphPath} (${data.graphExists
+        ? data.graphWillDelete
+            ? "will delete"
+            : "preserve"
+        : "absent"})`);
+    return out;
+}
+//# sourceMappingURL=uninstall.js.map

package/dist/commands/uninstall.js.map

@@ -0,0 +1 @@
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package/dist/commands/update.d.ts

@@ -0,0 +1,24 @@
+import type { ClientId } from "../types.js";
+import { readEnv } from "../lib/env.js";
+export interface UpdateOptions {
+    readonly client: ClientId | "all";
+    readonly dryRun: boolean;
+}
+export interface UpdateClientDiff {
+    readonly client: ClientId;
+    readonly path: string;
+    readonly action: "updated" | "no-change" | "skip" | "not-wired";
+    readonly updatedKeys: ReadonlyArray<string>;
+    readonly preservedKeys: ReadonlyArray<string>;
+    readonly reason?: string;
+}
+export interface UpdateRunResult {
+    readonly clients: ReadonlyArray<UpdateClientDiff>;
+    readonly applied: boolean;
+    readonly messages: ReadonlyArray<string>;
+}
+export interface UpdateDependencies {
+    readonly envOverrides?: Parameters<typeof readEnv>[0];
+}
+export declare function runUpdate(options: UpdateOptions, deps?: UpdateDependencies): Promise<UpdateRunResult>;
+//# sourceMappingURL=update.d.ts.map

package/dist/commands/update.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/update.js

@@ -0,0 +1,179 @@
+import { mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { dirname } from "node:path";
+import { readEnv } from "../lib/env.js";
+import { detectClients } from "../lib/paths.js";
+import { adapterFor } from "../clients/index.js";
+import { parseJsonSafely } from "../lib/json-patch.js";
+import { buildMcpServers, detectRepoRoot } from "../lib/mcp-entries.js";
+const NEURODOCK_PREFIX = "neurodock-";
+export async function runUpdate(options, deps = {}) {
+    const env = readEnv(deps.envOverrides ?? {});
+    const messages = [];
+    const detections = detectClients(env);
+    const targets = pickTargets(detections, options.client).filter((t) => t.exists);
+    if (targets.length === 0) {
+        messages.push("No client configs found to update.");
+        if (options.client !== "all") {
+            messages.push(`Looked for ${options.client} but no existing config was found.`);
+        }
+        return { clients: [], applied: false, messages };
+    }
+    const repoRoot = detectRepoRoot(env);
+    const desiredServers = buildMcpServers({
+        ...(repoRoot !== undefined ? { repoRoot } : {}),
+    });
+    const diffs = [];
+    for (const target of targets) {
+        diffs.push(diffClient(target, desiredServers));
+    }
+    if (options.dryRun) {
+        return {
+            clients: diffs,
+            applied: false,
+            messages: [
+                "Dry run. No changes written.",
+                ...messages,
+                ...formatDiffs(diffs),
+            ],
+        };
+    }
+    for (const d of diffs) {
+        if (d.action === "updated") {
+            applyDiff(d, desiredServers);
+            messages.push(`Updated ${d.client} at ${d.path}: ${d.updatedKeys.join(", ")}.`);
+        }
+        else if (d.action === "no-change") {
+            messages.push(`${d.client} at ${d.path} already up to date.`);
+        }
+        else if (d.action === "not-wired") {
+            messages.push(`${d.client} at ${d.path} has no NeuroDock servers wired. Run 'neurodock init' first.`);
+        }
+        else if (d.action === "skip") {
+            messages.push(`Skipped ${d.client} at ${d.path}: ${d.reason ?? "unable to parse"}.`);
+        }
+    }
+    return { clients: diffs, applied: true, messages };
+}
+function pickTargets(detections, client) {
+    if (client === "all")
+        return detections;
+    return detections.filter((d) => d.id === client);
+}
+function diffClient(target, desired) {
+    const raw = readFileSync(target.path, "utf8");
+    const parsed = parseJsonSafely(raw);
+    if (!parsed.ok) {
+        return {
+            client: target.id,
+            path: target.path,
+            action: "skip",
+            updatedKeys: [],
+            preservedKeys: [],
+            reason: `existing config is not valid JSON: ${parsed.error}`,
+        };
+    }
+    const existing = (parsed.value ?? {});
+    const existingServers = existing.mcpServers ?? {};
+    const allKeys = Object.keys(existingServers);
+    const neurodockKeys = allKeys.filter((k) => k.startsWith(NEURODOCK_PREFIX));
+    const preservedKeys = allKeys.filter((k) => !k.startsWith(NEURODOCK_PREFIX));
+    if (neurodockKeys.length === 0) {
+        return {
+            client: target.id,
+            path: target.path,
+            action: "not-wired",
+            updatedKeys: [],
+            preservedKeys,
+        };
+    }
+    const updatedKeys = [];
+    for (const key of neurodockKeys) {
+        const desiredEntry = desired[key];
+        if (desiredEntry === undefined)
+            continue;
+        if (!entriesEqual(existingServers[key], desiredEntry)) {
+            updatedKeys.push(key);
+        }
+    }
+    if (updatedKeys.length === 0) {
+        return {
+            client: target.id,
+            path: target.path,
+            action: "no-change",
+            updatedKeys: [],
+            preservedKeys,
+        };
+    }
+    return {
+        client: target.id,
+        path: target.path,
+        action: "updated",
+        updatedKeys,
+        preservedKeys,
+    };
+}
+function applyDiff(diff, desired) {
+    const adapter = adapterFor(diff.client);
+    const raw = readFileSync(diff.path, "utf8");
+    const parsed = parseJsonSafely(raw);
+    if (!parsed.ok)
+        return;
+    const existing = (parsed.value ?? {});
+    const existingServers = existing.mcpServers ?? {};
+    const nextServers = { ...existingServers };
+    for (const key of diff.updatedKeys) {
+        const next = desired[key];
+        if (next !== undefined)
+            nextServers[key] = next;
+    }
+    const shaped = adapter.shapeConfig(existing, nextServers);
+    mkdirSync(dirname(diff.path), { recursive: true });
+    writeFileSync(diff.path, `${JSON.stringify(shaped, null, 2)}\n`, "utf8");
+}
+function entriesEqual(a, b) {
+    if (a === undefined)
+        return false;
+    if (a.command !== b.command)
+        return false;
+    if (a.cwd !== b.cwd)
+        return false;
+    const aArgs = a.args ?? [];
+    const bArgs = b.args ?? [];
+    if (aArgs.length !== bArgs.length)
+        return false;
+    for (let i = 0; i < aArgs.length; i += 1) {
+        if (aArgs[i] !== bArgs[i])
+            return false;
+    }
+    return envEqual(a.env, b.env);
+}
+function envEqual(a, b) {
+    if (a === b)
+        return true;
+    const ka = a ? Object.keys(a).sort() : [];
+    const kb = b ? Object.keys(b).sort() : [];
+    if (ka.length !== kb.length)
+        return false;
+    for (let i = 0; i < ka.length; i += 1) {
+        const key = ka[i];
+        if (key !== kb[i])
+            return false;
+        if (key !== undefined && a?.[key] !== b?.[key])
+            return false;
+    }
+    return true;
+}
+function formatDiffs(diffs) {
+    const out = [];
+    for (const d of diffs) {
+        out.push(`Client ${d.client} (${d.action}): ${d.path}`);
+        for (const k of d.updatedKeys)
+            out.push(`  ~ mcpServers.${k}`);
+        for (const k of d.preservedKeys)
+            out.push(`  = mcpServers.${k} (preserved)`);
+        if (d.reason)
+            out.push(`  reason: ${d.reason}`);
+    }
+    return out;
+}
+//# sourceMappingURL=update.js.map

package/dist/commands/update.js.map

@@ -0,0 +1 @@
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package/dist/commands/validate.d.ts

@@ -0,0 +1,24 @@
+import { readEnv } from "../lib/env.js";
+export interface ValidateOptions {
+    readonly file?: string;
+    readonly strict: boolean;
+}
+export interface ValidateRunViolation {
+    readonly path: string;
+    readonly message: string;
+    readonly keyword: string;
+    readonly line?: number;
+}
+export interface ValidateRunResult {
+    readonly resolvedPath: string;
+    readonly missing: boolean;
+    readonly parseError?: string;
+    readonly valid: boolean;
+    readonly violations: ReadonlyArray<ValidateRunViolation>;
+}
+export interface ValidateDependencies {
+    readonly envOverrides?: Parameters<typeof readEnv>[0];
+}
+export declare function runValidate(options: ValidateOptions, deps?: ValidateDependencies): Promise<ValidateRunResult>;
+export declare function formatViolation(v: ValidateRunViolation, file: string): string;
+//# sourceMappingURL=validate.d.ts.map

package/dist/commands/validate.d.ts.map

@@ -0,0 +1 @@
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