@nemus-cli/nemus 0.2.4 → 0.2.6

package/src/utils/permission-sync.ts

@@ -419,7 +419,7 @@ function getSkillsSourceDir(): string {
 }
 
 /**
- * Install all workspace-manager skills from the skills/ directory.
+ * Install all nemus skills from the skills/ directory.
  * Each .md file becomes a skill under <skillsDir>/<skill-name>/SKILL.md.
  * Installs to all active agent skills directories.
  * Idempotent — safe to call multiple times.
@@ -471,7 +471,7 @@ export function installWorkspaceSkills(skillsDir?: string): void {
     }
 
     if (installed > 0) {
-      logSuccess(`Installed ${installed} workspace-manager skills in ${targetBase}`);
+      logSuccess(`Installed ${installed} nemus skills in ${targetBase}`);
     }
   }
 }
@@ -493,7 +493,7 @@ function copyDirRecursive(src: string, dest: string): void {
 }
 
 /**
- * Remove all workspace-manager skills from all possible agent directories.
+ * Remove all nemus skills from all possible agent directories.
  * Reads the skills/ source directory to know which skill names to remove.
  * Removes from both Claude and Pi dirs regardless of current config to avoid orphans.
  */
@@ -536,7 +536,7 @@ export function uninstallWorkspaceSkills(skillsDir?: string): void {
 // ─── Workspace status-line ────────────────────────────────────────────────────
 
 /** Absolute install path for the workspace-table Python script. */
-const WORKSPACE_TABLE_SCRIPT = path.join(os.homedir(), '.workspace-manager-table.py');
+const WORKSPACE_TABLE_SCRIPT = path.join(os.homedir(), '.nemus-table.py');
 
 /**
  * Resolve the bundled workspace-table.py path from the installed package.
@@ -558,7 +558,7 @@ function getWorkspaceTableSourcePath(): string {
  * Claude Code shows its default footer — the user's existing styling is
  * never affected.
  *
- * The script is copied to ~/.workspace-manager-table.py and registered in
+ * The script is copied to ~/.nemus-table.py and registered in
  * ~/.claude/settings.json only when no statusLine is already configured —
  * we never overwrite a custom status line the user already has.
  *
@@ -570,7 +570,7 @@ export function installWorkspaceStatusLine(settingsPath?: string): void {
 
   if ((settings as any).statusLine) {
     logInfo('statusLine already configured in ~/.claude/settings.json — skipping workspace-table install');
-    logInfo(`  To use workspace-manager\'s table, replace your statusLine command with: ${WORKSPACE_TABLE_SCRIPT}`);
+    logInfo(`  To use nemus\'s table, replace your statusLine command with: ${WORKSPACE_TABLE_SCRIPT}`);
     return;
   }
 
@@ -597,7 +597,7 @@ export function installWorkspaceStatusLine(settingsPath?: string): void {
 
 /**
  * Remove the workspace status-line from Claude Code\'s settings.json.
- * Only removes it if the command points to workspace-manager\'s own script.
+ * Only removes it if the command points to nemus\'s own script.
  *
  * @param settingsPath Override ~/.claude/settings.json (for testing).
  */
@@ -612,8 +612,8 @@ export function uninstallWorkspaceStatusLine(settingsPath?: string): void {
   }
 
   const cmd: string = existing.command ?? '';
-  if (!cmd.includes('workspace-manager-table')) {
-    logInfo('statusLine is not managed by workspace-manager — leaving it unchanged');
+  if (!cmd.includes('nemus-table')) {
+    logInfo('statusLine is not managed by nemus — leaving it unchanged');
     return;
   }
 
@@ -639,7 +639,7 @@ function extractScriptPath(command: string): string | null {
 }
 
 /**
- * Detect and repair workspace-manager hook commands in ~/.claude/settings.json
+ * Detect and repair nemus hook commands in ~/.claude/settings.json
  * that point to script paths which no longer exist on disk.
  *
  * This happens when the package is installed via a manager (e.g. Volta) whose

package/src/utils/pi-extensions.test.ts

@@ -38,7 +38,7 @@ describe('Pi extensions', () => {
 
       for (const file of fs.readdirSync(extensionsDir)) {
         const content = fs.readFileSync(path.join(extensionsDir, file), 'utf-8');
-        expect(content).toContain('auto-generated by workspace-manager');
+        expect(content).toContain('auto-generated by nemus');
       }
     });
 

package/src/utils/pi-extensions.ts

@@ -16,8 +16,8 @@ import { logSuccess, logInfo, logWarning } from './logger';
 
 const PI_EXTENSIONS_DIR = path.join(os.homedir(), '.pi', 'agent', 'extensions');
 
-/** Marker comment that identifies workspace-manager managed extensions */
-const MANAGED_MARKER = '(auto-generated by workspace-manager)';
+/** Marker comment that identifies nemus managed extensions */
+const MANAGED_MARKER = '(auto-generated by nemus)';
 
 /**
  * Extension template definitions.
@@ -92,7 +92,7 @@ function getExtensionTemplates(options: { workspaceInputStatus?: boolean } = {})
 }
 
 /**
- * Install all workspace-manager Pi extensions.
+ * Install all nemus Pi extensions.
  * Idempotent — overwrites existing managed extensions with latest templates.
  *
  * @param extensionsDir Override the extensions directory (for testing).
@@ -142,14 +142,14 @@ export function installPiExtensions(extensionsDir?: string, options: { workspace
 }
 
 /**
- * Uninstall workspace-manager managed Pi extensions.
+ * Uninstall nemus managed Pi extensions.
  * Only removes extensions that contain the managed marker or match
  * known installed names.
  *
  * @param extensionsDir Override the extensions directory (for testing).
  */
 /**
- * Uninstall workspace-manager managed Pi extensions.
+ * Uninstall nemus managed Pi extensions.
  * Pass `onlyNames` to remove only specific extension files (for opt-out).
  *
  * @param extensionsDir Override the extensions directory (for testing).

package/src/utils/repo-resolver.test.ts

@@ -9,7 +9,7 @@ const repos = [
   { name: 'payments-service' },
   { name: 'analytics-service' },
   { name: 'notifications-service' },
-  { name: 'workspace-manager' },
+  { name: 'nemus' },
   { name: 'casper' },
 ];
 

package/skills/workspace-manager/SKILL.md

@@ -1,201 +0,0 @@
----
-name: workspace-manager
-description: Manage multi-repo development workspaces — create, sync, branch, diff, clone, archive, analyze dependencies, run commands across repos, check status, clean up, delete, list org repos, search repos, list suites, remove repo, cache, suite management, sessions, history, generate docs, configure, MCP server, AI prompt. Use when working with workspaces, repos, branches, git operations across multiple repos, or the `nemus` CLI tool. NEVER use `git clone` directly — always use `nemus update` to add repos and `nemus create` to create workspaces.
-bashPattern: "\\bnemus\\s+(create|list|update|delete|sync|status|diff|run|go|doctor|analyze-deps|history|cleanup|remove-repo|archive|sessions|generate-docs|configure|configure-claude|ghq-status|tui|dashboard|dash|branch|suite|cache|mcp|--)\\b"
----
-
-# Workspace Manager
-
-> **CRITICAL — Read before taking any action:**
-> - **NEVER** run `git clone` directly to add a repository to a workspace.
-> - **NEVER** run `git clone` directly to create a workspace.
-> - **NEVER** use `git worktree` to get a second checkout of a tracked repo — worktrees are invisible to `nemus status`/`nemus sync`. Add another instance with `nemus update --repos <repo>:<suffix>` instead.
-> - **ONLY read code from repos in the CURRENT workspace.** If you need to read or reference code from a repo that isn't in the current workspace, add it with `nemus update --workspace <current> --repos <repo> --yes` and read it there. **NEVER** read that repo's code from another workspace, a global ghq/clone path, or anywhere outside the current workspace — other workspaces may be on different branches or stale, and reading them silently breaks context isolation.
-> - **ALWAYS** use `nemus update --workspace <name> --repos <repo> --yes` to add repos.
-> - To add the **same repo more than once** (e.g. a second branch checkout), use `nemus update --workspace <name> --repos <repo>:<suffix> --yes` — it clones into `<repo>-<suffix>` and is tracked independently.
-> - **ALWAYS** use `nemus create --workspace <name> --repos <repos> --yes` to create workspaces.
-> - Direct git operations bypass workspace metadata, break `nemus status`/`nemus sync`, and leave context files stale.
-
-Manage multi-repo development workspaces using the `nemus` CLI tool (alias: `nem`).
-
-All commands support `--help` for detailed usage. The CLI uses Commander.js — every command has auto-generated help at root, command, and subcommand levels.
-
-## Global Flags
-
-These flags work on any command:
-
-| Flag | Short | Description |
-|---|---|---|
-| `--force-refresh` | `-f` | Force refresh GitHub repos (skip cache) |
-| `--yes` | `-y` | Skip all confirmation prompts |
-| `--version` | `-V` | Print version number |
-| `--help` | `-h` | Show help for any command |
-
-## Non-Interactive Usage (for agents/scripts)
-
-Every command can be run fully non-interactively by providing all required options as flags. When a required value (like workspace name) is missing and there's no TTY, the command will error with a usage hint.
-
-Pattern: **options-first with interactive fallback**.
-- If a flag is provided, it's used directly.
-- If a flag is omitted and a TTY is available, Inquirer prompts the user.
-- `--yes` / `-y` skips all confirmation prompts, and — for commands that create a workspace (`create`, `suite use`) — also skips auto-launching the AI agent afterward in the shell integration, so the command returns immediately instead of dropping into an interactive `claude`/`pi`/`opencode` session.
-
-```bash
-# Fully non-interactive
-nemus create --workspace payments --repos partnerships-api,payments-db --yes
-
-# Partially interactive (prompts for repos)
-nemus create --workspace payments
-
-# Fully interactive (prompts for everything)
-nemus create
-```
-
-## Command Aliases
-
-| Command | Alias(es) | Command | Alias(es) |
-|---------|-----------|---------|-----------|
-| `create` | `c` | `diff` | `di` |
-| `list` | `l` | `run` | `r` |
-| `update` | `u` | `archive` | `a` |
-| `delete` | `d`, `del` | `sessions` | `ses` |
-| `sync` | `s` | `cleanup` | `cl` |
-| `status` | `st` | `remove-repo` | `rr` |
-| `doctor` | `doc` | `generate-docs` | `gd` |
-| `analyze-deps` | `ad` | `configure` | `cfg` |
-| `history` | `h` | `configure-claude` | `cc` |
-| `dashboard` | `dash` | | |
-
-## Quick Start
-
-| What you want to do | Reference | CLI Command |
-|---|---|---|
-| Create a workspace | [create-workspace](references/create-workspace.md) | `nemus create` |
-| Add repos to workspace | [update-workspace](references/update-workspace.md) | `nemus update` |
-| Check git status | [workspace-status](references/workspace-status.md) | `nemus status <name>` |
-| Pull latest changes | [workspace-sync](references/workspace-sync.md) | `nemus sync <name>` |
-| List all workspaces | [list-workspaces](references/list-workspaces.md) | `nemus list` |
-| Navigate to workspace | [go](references/go.md) | `nemus go <name>` or `nemgo <name>` |
-| Search for repos | [search-repos](references/search-repos.md) | `nemus cache search <query>` |
-| Resume Claude session | [sessions](references/sessions.md) | `nemus sessions` |
-
-## Command Reference
-
-### Core Workspace Lifecycle
-
-| Intent | Reference | CLI | Alias |
-|---|---|---|---|
-| Create new workspace | [create-workspace](references/create-workspace.md) | `nemus create` | `c` |
-| Add repos to workspace | [update-workspace](references/update-workspace.md) | `nemus update` | `u` |
-| Delete workspace permanently | [delete-workspace](references/delete-workspace.md) | `nemus delete` | `d` |
-| Archive / unarchive workspace | [archive-workspace](references/archive-workspace.md) | `nemus archive` | `a` |
-| List all workspaces | [list-workspaces](references/list-workspaces.md) | `nemus list` | `l` |
-| Navigate to workspace | [go](references/go.md) | `nemus go [name]` | — |
-
-### Status & Operations
-
-| Intent | Reference | CLI | Alias |
-|---|---|---|---|
-| Git status across repos | [workspace-status](references/workspace-status.md) | `nemus status [name]` | `st` |
-| Pull latest (git sync) | [workspace-sync](references/workspace-sync.md) | `nemus sync [name]` | `s` |
-| Show diff summary | [workspace-diff](references/workspace-diff.md) | `nemus diff [name]` | `di` |
-| Run shell command across repos | [run-command](references/run-command.md) | `nemus run [name] <cmd>` | `r` |
-| Health check | [workspace-doctor](references/workspace-doctor.md) | `nemus doctor [name]` | `doc` |
-| Clean node_modules / artifacts | [workspace-cleanup](references/workspace-cleanup.md) | `nemus cleanup <name>` | `cl` |
-| Remove repo from workspace | [remove-repo](references/remove-repo.md) | `nemus remove-repo` | `rr` |
-| Analyze inter-repo deps | [analyze-deps](references/analyze-deps.md) | `nemus analyze-deps [name]` | `ad` |
-| Generate docs for workspace | [generate-docs](references/generate-docs.md) | `nemus generate-docs [name]` | `gd` |
-
-### Branch Management
-
-| Intent | Reference | CLI |
-|---|---|---|
-| Switch branch across repos | [switch-branch](references/switch-branch.md) | `nemus branch switch` |
-| Create branch across repos | [branch-create](references/branch-create.md) | `nemus branch create` |
-| Merge branches across repos | [branch-merge](references/branch-merge.md) | `nemus branch merge <ws> <src> <tgt>` |
-| Rebase branches across repos | [branch-rebase](references/branch-rebase.md) | `nemus branch rebase <ws> <base>` |
-
-### Suites (Reusable Repo Collections)
-
-| Intent | Reference | CLI |
-|---|---|---|
-| List saved suites | [list-suites](references/list-suites.md) | `nemus suite list` |
-| Create a suite | [suite-create](references/suite-create.md) | `nemus suite create` |
-| Delete a suite | [suite-delete](references/suite-delete.md) | `nemus suite delete` |
-| Export suite(s) to JSON | [suite-export](references/suite-export.md) | `nemus suite export [file]` |
-| Import suite(s) from JSON | [suite-import](references/suite-import.md) | `nemus suite import <file>` |
-| Create workspace from suite | [suite-use](references/suite-use.md) | `nemus suite use` |
-
-### Cache & Repo Discovery
-
-| Intent | Reference | CLI |
-|---|---|---|
-| Search org repos | [search-repos](references/search-repos.md) | `nemus cache search <query>` |
-| List all org repos | [list-org-repos](references/list-org-repos.md) | `nemus cache list` |
-| View cache statistics | [cache-info](references/cache-info.md) | `nemus cache info` |
-| Refresh repo cache | [update-cache](references/update-cache.md) | `nemus cache refresh` |
-| Clear cache | [cache-clear](references/cache-clear.md) | `nemus cache clear` |
-
-### Sessions & History
-
-| Intent | Reference | CLI | Alias |
-|---|---|---|---|
-| Resume Claude session | [sessions](references/sessions.md) | `nemus sessions` | `ses` |
-| Agent management dashboard | [dashboard](references/dashboard.md) | `nemus dashboard` | `dash` |
-| View operation history | [history](references/history.md) | `nemus history` | `h` |
-| View history statistics | [history](references/history.md) | `nemus history stats` | — |
-| Clear history | [history](references/history.md) | `nemus history clear` | — |
-
-### Configuration
-
-| Intent | Reference | CLI | Alias |
-|---|---|---|---|
-| Configure workspace manager | [configure](references/configure.md) | `nemus configure` | `cfg` |
-| Configure Claude integration | [configure-claude](references/configure-claude.md) | `nemus configure-claude` | `cc` |
-| Check ghq status | [ghq-status](references/ghq-status.md) | `nemus ghq-status` | — |
-
-### MCP Server
-
-| Intent | Reference | CLI |
-|---|---|---|
-| Install MCP server | [mcp](references/mcp.md) | `nemus mcp install` |
-| Uninstall MCP server | [mcp](references/mcp.md) | `nemus mcp uninstall` |
-| Upgrade MCP hooks/skills | [mcp](references/mcp.md) | `nemus mcp upgrade` |
-| Check MCP status | [mcp](references/mcp.md) | `nemus mcp status` |
-
-### AI Assistant
-
-| Intent | Reference | CLI |
-|---|---|---|
-| Natural language workspace management | [ai-prompt](references/ai-prompt.md) | `nemus -- <prompt>` |
-
-### Interactive TUI
-
-| Intent | CLI |
-|---|---|
-| Launch full interactive terminal UI | `nemus tui` |
-
-## Routing
-
-When the user's intent matches a row above, read the corresponding reference file for step-by-step instructions before running any CLI command. If no reference file exists for a command, use `nemus <command> --help` to get usage details.
-
-> **Reminder**: Do not use bare `git clone`, `git pull`, or other git commands to manage workspace repos.
-> All repo management **must** go through `nemus` commands so that workspace metadata and context files stay in sync.
-
-## Deprecated Aliases
-
-These still work but print a deprecation warning. Use the modern form instead:
-
-| Old | New |
-|-----|-----|
-| `nemus sc` | `nemus suite create` |
-| `nemus sls` | `nemus suite list` |
-| `nemus sd` | `nemus suite delete` |
-| `nemus se` | `nemus suite export` |
-| `nemus si` | `nemus suite import` |
-| `nemus fs` | `nemus suite use` |
-| `nemus sb` | `nemus branch switch` |
-| `nemus bc` | `nemus branch create` |
-| `nemus bm` | `nemus branch merge` |
-| `nemus br` | `nemus branch rebase` |
-| `nemus uc` | `nemus cache refresh` |

package/skills/workspace-manager/references/archive-workspace.md

@@ -1,38 +0,0 @@
-# Archive Workspace
-
-Archive a workspace to hide it from default listings. Archived workspaces auto-delete after 30 days.
-
-## Instructions
-
-### Archive
-```bash
-nemus archive --workspace <name> --yes
-```
-
-### Unarchive
-```bash
-nemus archive --unarchive --workspace <name> --yes
-```
-
-To list archived workspaces first:
-```bash
-nemus list --archived
-```
-
-## Flags
-
-| Flag | Short | Description |
-|---|---|---|
-| `--workspace <name>` | `-w` | Workspace name(s), comma-separated for multiple |
-| `--yes` | `-y` | Skip confirmation prompt |
-| `--unarchive` | | Restore instead of archive |
-
-## When to Suggest
-
-- Suggest archiving instead of deleting when the user may need the workspace later.
-- Suggest unarchiving when the user asks about a workspace that was recently archived.
-
-## Success Criteria
-
-- Workspace is hidden from default `nemus list` results.
-- User is aware of the 30-day auto-delete policy.

package/skills/workspace-manager/references/workspace-status.md

@@ -1,43 +0,0 @@
-# Workspace Status
-
-Show git status (branch, clean/dirty, ahead/behind) for all repositories in a workspace.
-
-## Instructions
-
-```bash
-nemus status <workspace>
-```
-
-Alias:
-```bash
-w st <workspace>
-```
-
-Without a workspace name, prompts interactively:
-```bash
-nemus status
-```
-
-## Output
-
-Displays a table per repository showing:
-- **Repo name**
-- **Branch** (with detached HEAD warning)
-- **Status** — clean ✓ or modified/untracked count
-- **Ahead/Behind** — commits ahead/behind remote
-- **Modified files** count
-
-Plus a summary: clean repos, dirty repos, needs push, needs pull.
-
-## Suggested Follow-ups
-
-Based on the results:
-- Uncommitted changes → suggest `nemus diff <name>` to see details
-- Behind remote → suggest `nemus sync <name>` to pull latest
-- Mixed branches → suggest `nemus branch switch` to align
-- Repos ahead of remote → suggest pushing changes
-
-## Success Criteria
-
-- Per-repo status is displayed in a clear table.
-- Summary highlights any repos needing attention.