@neat.is/mcp 0.4.16 → 0.4.18

package/dist/index.cjs

@@ -7,6 +7,47 @@ var import_stdio = require("@modelcontextprotocol/sdk/server/stdio.js");
 var import_zod = require("zod");
 var import_types2 = require("@neat.is/types");
 
+// src/base-url.ts
+var import_node_fs = require("fs");
+var import_node_path = require("path");
+var DEFAULT_BASE_URL = "http://localhost:8080";
+function resolveFromDaemonRecord(cwd) {
+  let dir = cwd;
+  for (; ; ) {
+    const url = readDaemonRecord((0, import_node_path.join)(dir, "neat-out", "daemon.json"));
+    if (url !== void 0) return url;
+    const parent = (0, import_node_path.dirname)(dir);
+    if (parent === dir) return void 0;
+    dir = parent;
+  }
+}
+function readDaemonRecord(path) {
+  let raw;
+  try {
+    raw = (0, import_node_fs.readFileSync)(path, "utf8");
+  } catch {
+    return void 0;
+  }
+  let record;
+  try {
+    record = JSON.parse(raw);
+  } catch {
+    return void 0;
+  }
+  if (record == null || typeof record !== "object") return void 0;
+  if (record.status === "stopped") return void 0;
+  const rest = record.ports?.rest;
+  if (typeof rest !== "number" || !Number.isInteger(rest) || rest <= 0 || rest > 65535) {
+    return void 0;
+  }
+  return `http://localhost:${rest}`;
+}
+function resolveBaseUrl(env = process.env, cwd = process.cwd()) {
+  const override = env.NEAT_CORE_URL ?? env.NEAT_API_URL;
+  if (override) return override;
+  return resolveFromDaemonRecord(cwd) ?? DEFAULT_BASE_URL;
+}
+
 // src/client.ts
 function createHttpClient(baseUrl2, bearerToken) {
   const root = baseUrl2.replace(/\/$/, "");
@@ -863,7 +904,7 @@ async function neatRollbackExtension(client2, input) {
 }
 
 // src/index.ts
-var baseUrl = process.env.NEAT_CORE_URL ?? "http://localhost:8080";
+var baseUrl = resolveBaseUrl();
 var authToken = process.env.NEAT_AUTH_TOKEN;
 var client = createHttpClient(baseUrl, authToken && authToken.length > 0 ? authToken : void 0);
 var defaultProject = process.env.NEAT_DEFAULT_PROJECT;

package/dist/index.cjs.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/index.ts","../src/client.ts","../src/resources.ts","../src/tools.ts","../src/format.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { McpServer, type ToolCallback } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js'\nimport { z } from 'zod'\nimport {\n  CheckPoliciesScopeSchema,\n  DivergenceTypeSchema,\n  HypotheticalActionSchema,\n  type MCPToolName,\n} from '@neat.is/types'\nimport { createHttpClient } from './client.js'\nimport { registerResources } from './resources.js'\nimport {\n  checkPolicies,\n  getBlastRadius,\n  getDependencies,\n  getDivergences,\n  getGraphDiff,\n  getIncidentHistory,\n  getObservedDependencies,\n  getRecentStaleEdges,\n  getRootCause,\n  neatApplyExtension,\n  neatDescribeProjectInstrumentation,\n  neatDryRunExtension,\n  neatListUninstrumented,\n  neatLookupInstrumentation,\n  neatRollbackExtension,\n  semanticSearch,\n} from './tools.js'\n\nconst baseUrl = process.env.NEAT_CORE_URL ?? 'http://localhost:8080'\n// ADR-073 §3 — carry the operator's bearer to a secured core. Sourced from\n// NEAT_AUTH_TOKEN, the same env the daemon enforces against; empty/unset\n// keeps the header off so a loopback dev core stays reachable.\nconst authToken = process.env.NEAT_AUTH_TOKEN\nconst client = createHttpClient(baseUrl, authToken && authToken.length > 0 ? authToken : undefined)\n\n// `NEAT_DEFAULT_PROJECT` is the implicit project for tool calls that don't\n// pass a `project` arg. Unset means \"use the core's `default` project\" — we\n// route those calls through the legacy unprefixed URL so an older core (one\n// that predates #83) still gets the request it expects.\nconst defaultProject = process.env.NEAT_DEFAULT_PROJECT\nconst projectFor = (input: { project?: string }): string | undefined =>\n  input.project ?? defaultProject\n\nconst projectField = z\n  .string()\n  .optional()\n  .describe(\n    'Project name when the core hosts more than one (set NEAT_PROJECTS=...). Omit to use the default project.',\n  )\n\nconst server = new McpServer({\n  name: 'neat',\n  version: '0.1.0',\n})\n\n// Register every MCP tool through this wrapper, not server.tool directly.\n// The tool name is constrained to MCP_TOOL_NAMES in @neat.is/types — add the\n// name there first or this won't compile. The contracts audit also checks\n// that registrations and the manifest match both ways, so the tool surface\n// can't drift from the contract again.\nconst registerTool = <Args extends z.ZodRawShape>(\n  name: MCPToolName,\n  description: string,\n  paramsSchema: Args,\n  cb: ToolCallback<Args>,\n): ReturnType<typeof server.tool> => server.tool(name, description, paramsSchema, cb)\n\nregisterTool(\n  'get_root_cause',\n  'Trace a failing node up its dependency graph to find the underlying cause. Use this when something is breaking and you want to know which upstream component is the actual culprit.',\n  {\n    errorNode: z\n      .string()\n      .describe('Graph node id where the error surfaced, e.g. \"database:payments-db\"'),\n    errorId: z\n      .string()\n      .optional()\n      .describe('Specific error event id from incident history; if set, the result is coloured with that error message'),\n    project: projectField,\n  },\n  async (input) => getRootCause(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_blast_radius',\n  'List every node downstream of the given node — what would break if this node failed or was redeployed.',\n  {\n    nodeId: z.string().describe('Graph node id to compute blast radius from'),\n    depth: z\n      .number()\n      .int()\n      .nonnegative()\n      .max(20)\n      .optional()\n      .describe('Max BFS depth (default 10)'),\n    project: projectField,\n  },\n  async (input) => getBlastRadius(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_dependencies',\n  'List the transitive outgoing dependencies of a node, BFS to depth N (default 3, max 10). Each result carries distance, edge type, and provenance — both static (EXTRACTED) and runtime (OBSERVED). Pass depth=1 for direct-only.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    depth: z\n      .number()\n      .int()\n      .min(1)\n      .max(10)\n      .optional()\n      .describe('BFS depth (default 3, max 10). depth=1 returns direct dependencies only.'),\n    project: projectField,\n  },\n  async (input) => getDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_observed_dependencies',\n  'List only the runtime (OBSERVED via OTel) outgoing dependencies of a node. Use this to compare what code SAYS the service depends on vs what production actually does.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    project: projectField,\n  },\n  async (input) => getObservedDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_incident_history',\n  'Return recent OTel error events recorded against a node, most recent first.',\n  {\n    nodeId: z.string().describe('Graph node id to query'),\n    limit: z.number().int().positive().max(100).optional().describe('Max events to return (default 20)'),\n    project: projectField,\n  },\n  async (input) => getIncidentHistory(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'semantic_search',\n  'Search nodes by natural-language query. Uses embedding vectors when an embedder is available (Ollama nomic-embed-text → in-process MiniLM → substring fallback) — phrase the query the way you would describe what you want.',\n  {\n    query: z.string().describe('Free-text query, e.g. \"service handling checkout payments\"'),\n    project: projectField,\n  },\n  async (input) => semanticSearch(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_graph_diff',\n  'Diff a saved graph snapshot against the current live graph. Useful for change reviews and post-incidents — answers \"what changed in the architecture between then and now.\" Returns added/removed/changed nodes and edges with both snapshot timestamps.',\n  {\n    againstSnapshot: z\n      .string()\n      .describe(\n        'Path or http(s) URL of the snapshot to diff against (the \"before\" state). The current graph is the \"after\".',\n      ),\n    project: projectField,\n  },\n  async (input) => getGraphDiff(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_recent_stale_edges',\n  'List the most recent OBSERVED → STALE edge transitions. Use this to spot integrations that have gone quiet — a CALLS edge that just went stale typically means an upstream stopped calling, not that the link is healthy.',\n  {\n    limit: z\n      .number()\n      .int()\n      .positive()\n      .max(200)\n      .optional()\n      .describe('Max events to return (default 50)'),\n    edgeType: z\n      .string()\n      .optional()\n      .describe('Filter by edge type — e.g. \"CALLS\" or \"CONNECTS_TO\"'),\n    project: projectField,\n  },\n  async (input) => getRecentStaleEdges(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_divergences',\n  \"Returns places where what the code declares (EXTRACTED) doesn't match what production observed (OBSERVED). The single most NEAT-shaped query — the one that justifies the whole graph. Use when the user asks 'is anything weird?' or 'what does production do that the code doesn't?' or 'find me a bug' on an unfamiliar codebase. Returns divergences ranked by confidence × severity. Prefer this over `get_root_cause` when no specific node is failing.\",\n  {\n    type: z\n      .array(DivergenceTypeSchema)\n      .optional()\n      .describe(\n        'Filter by divergence type. One or more of: missing-observed, missing-extracted, version-mismatch, host-mismatch, compat-violation. Omit for all.',\n      ),\n    minConfidence: z\n      .number()\n      .min(0)\n      .max(1)\n      .optional()\n      .describe('Drop divergences below this confidence threshold (0.0 - 1.0).'),\n    node: z\n      .string()\n      .optional()\n      .describe('Scope to divergences involving this node id (as source or target).'),\n    project: projectField,\n  },\n  async (input) =>\n    getDivergences(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'check_policies',\n  'Inspect or dry-run the project\\'s policy.json. Without hypotheticalAction, returns currently-recorded violations. With hypotheticalAction, returns violations that would result if the action were applied. Architectural assertions in five shapes (structural / compatibility / provenance / ownership / blast-radius).',\n  {\n    scope: CheckPoliciesScopeSchema.optional().describe(\n      'Narrow to a subset. Default \"all\".',\n    ),\n    hypotheticalAction: HypotheticalActionSchema.optional().describe(\n      'Dry-run mode: simulate the action and return resulting violations. Omit for current state.',\n    ),\n    project: projectField,\n  },\n  async (input) =>\n    checkPolicies(client, {\n      ...input,\n      project: projectFor(input),\n    } as Parameters<typeof checkPolicies>[1]),\n)\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nregisterTool(\n  'neat_list_uninstrumented',\n  'List libraries in the project that need instrumentation beyond the auto-instrumentations bundle. Returns first-party, third-party, and gap libraries that require an explicit instrumentation package.',\n  { project: projectField },\n  async (input) => neatListUninstrumented(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_lookup_instrumentation',\n  'Look up the registry entry for a specific library. Returns the canonical instrumentation package, version, and registration snippet if one exists.',\n  {\n    library: z.string().describe('npm package name, e.g. \"@prisma/client\"'),\n    installedVersion: z.string().optional().describe('Installed version for range matching'),\n    project: projectField,\n  },\n  async (input) => neatLookupInstrumentation(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_describe_project_instrumentation',\n  'Describe the current state of OTel instrumentation in the project: which hook files exist, whether .env.neat is present, which OTel deps are installed.',\n  { project: projectField },\n  async (input) => neatDescribeProjectInstrumentation(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_apply_extension',\n  'Install an instrumentation package and splice its registration into the existing OTel hook file. Idempotent — calling twice with the same args is a no-op. Only modifies instrumentation files, package.json, and the lockfile (via the project package manager).',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array, e.g. \"instrumentations.push(new PrismaInstrumentation())\"'),\n    project: projectField,\n  },\n  async (input) => neatApplyExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_dry_run_extension',\n  'Preview what neat_apply_extension would do without making any changes. Returns the exact file diff, deps to add, and install command.',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array'),\n    project: projectField,\n  },\n  async (input) => neatDryRunExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_rollback_extension',\n  'Undo the last neat_apply_extension for a given library. Removes the dep from package.json and the registration from the hook file. Does not re-run the package manager — run install manually to sync the lockfile.',\n  {\n    library: z.string().describe('The library whose instrumentation should be rolled back'),\n    project: projectField,\n  },\n  async (input) => neatRollbackExtension(client, { ...input, project: projectFor(input) }),\n)\n\n// Resources sit alongside tools — same data, different access pattern. Read\n// the per-node resource for raw attrs+edges JSON; subscribe to the incidents\n// resource to be notified when new errors land. The tools above are unchanged.\nconst incidentsPollMs = process.env.NEAT_RESOURCE_POLL_MS\n  ? Number(process.env.NEAT_RESOURCE_POLL_MS)\n  : undefined\nconst resourceRegistration = registerResources(server, client, {\n  ...(incidentsPollMs !== undefined ? { incidentsPollMs } : {}),\n  ...(defaultProject ? { project: defaultProject } : {}),\n})\n\nasync function main(): Promise<void> {\n  const transport = new StdioServerTransport()\n  await server.connect(transport)\n}\n\nconst stopPolling = (): void => {\n  resourceRegistration.stop()\n}\nprocess.on('SIGTERM', stopPolling)\nprocess.on('SIGINT', stopPolling)\n\nmain().catch((err) => {\n  console.error(err)\n  process.exit(1)\n})\n","// Thin HTTP client for the neat-core REST surface. Tools call out via this\n// instead of fetch() directly so tests can swap in a stub implementation\n// without monkey-patching globals.\n\nexport interface HttpClient {\n  get<T>(path: string): Promise<T>\n  // POST is optional on the interface so test stubs that only need GET don't\n  // have to implement it. Production createHttpClient always provides it.\n  post?<T>(path: string, body: unknown): Promise<T>\n}\n\n// ADR-073 §3 — the MCP server is a first-party read client, so it carries the\n// operator's bearer on every call the same way the CLI does. `bearerToken`\n// comes from `NEAT_AUTH_TOKEN` (sourced once in index.ts). Empty / undefined\n// keeps the header off, so an unauthenticated loopback dev daemon still works.\nexport function createHttpClient(baseUrl: string, bearerToken?: string): HttpClient {\n  const root = baseUrl.replace(/\\/$/, '')\n  const authHeader =\n    bearerToken && bearerToken.length > 0\n      ? { authorization: `Bearer ${bearerToken}` }\n      : {}\n  return {\n    async get<T>(path: string): Promise<T> {\n      const res = await fetch(`${root}${path}`, { headers: { ...authHeader } })\n      if (!res.ok) {\n        const body = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on GET ${path}: ${body}`)\n      }\n      return (await res.json()) as T\n    },\n    async post<T>(path: string, body: unknown): Promise<T> {\n      const res = await fetch(`${root}${path}`, {\n        method: 'POST',\n        headers: { 'content-type': 'application/json', ...authHeader },\n        body: JSON.stringify(body),\n      })\n      if (!res.ok) {\n        const text = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on POST ${path}: ${text}`)\n      }\n      return (await res.json()) as T\n    },\n  }\n}\n\nexport class HttpError extends Error {\n  constructor(\n    public readonly status: number,\n    message: string,\n  ) {\n    super(message)\n    this.name = 'HttpError'\n  }\n}\n","// MCP Resources — additive surface alongside the eight tools. Two resources:\n//\n//   neat://node/<id>          — one resource per graph node. Read returns the\n//                                node attributes plus its outbound edges.\n//   neat://incidents/recent   — most recent error events. Pollable by the SDK\n//                                via subscribe; we send `notifications/resources/\n//                                updated` when /incidents grows.\n//\n// Pure read helpers are exported so tests can exercise them without spinning up\n// an MCP transport. `registerResources()` does the SDK wiring + the poll loop.\n\nimport type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport {\n  ResourceTemplate,\n} from '@modelcontextprotocol/sdk/server/mcp.js'\nimport type {\n  ListResourcesResult,\n  ReadResourceResult,\n} from '@modelcontextprotocol/sdk/types.js'\nimport type { ErrorEvent, GraphEdge, GraphNode, PolicyViolation } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\ninterface SerializedGraph {\n  nodes: GraphNode[]\n  edges: GraphEdge[]\n}\n\nconst NODE_RESOURCE_MIME = 'application/json'\nconst INCIDENTS_URI = 'neat://incidents/recent'\nconst INCIDENTS_DEFAULT_LIMIT = 50\nconst POLICY_VIOLATIONS_URI = 'neat://policies/violations'\nconst POLICY_VIOLATIONS_DEFAULT_LIMIT = 100\n\nfunction nodeUri(id: string): string {\n  // Node ids contain `:` which RFC 6570 percent-encodes; doing it explicitly\n  // here keeps the URI we hand the SDK identical to what `list` produces.\n  return `neat://node/${encodeURIComponent(id)}`\n}\n\n// Project-aware URL prefix for the underlying core. When unset, hit the\n// legacy unprefixed routes (which the core resolves to project=`default`).\nfunction corePrefix(project: string | undefined): string {\n  return project ? `/projects/${encodeURIComponent(project)}` : ''\n}\n\nfunction nameFromAttrs(attrs: GraphNode): string {\n  return (attrs as { name?: string }).name ?? attrs.id\n}\n\nexport async function listNodeResources(\n  client: HttpClient,\n  project?: string,\n): Promise<ListResourcesResult> {\n  const graph = await client.get<SerializedGraph>(`${corePrefix(project)}/graph`)\n  return {\n    resources: graph.nodes.map((n) => ({\n      uri: nodeUri(n.id),\n      name: nameFromAttrs(n),\n      description: `${n.type} — ${nameFromAttrs(n)}`,\n      mimeType: NODE_RESOURCE_MIME,\n    })),\n  }\n}\n\nexport async function readNodeResource(\n  client: HttpClient,\n  id: string,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const uri = nodeUri(id)\n  const prefix = corePrefix(project)\n  try {\n    const [nodeBody, edges] = await Promise.all([\n      client.get<{ node: GraphNode }>(`${prefix}/graph/node/${encodeURIComponent(id)}`),\n      client.get<EdgesResponse>(`${prefix}/graph/edges/${encodeURIComponent(id)}`),\n    ])\n    const body = {\n      node: nodeBody.node,\n      // Outbound only — the issue spec says \"attrs + outbound edges\". Inbound\n      // edges are still reachable via the other endpoint and would double the\n      // payload for hub nodes (e.g. a shared database).\n      outboundEdges: edges.outbound,\n    }\n    return {\n      contents: [\n        {\n          uri,\n          mimeType: NODE_RESOURCE_MIME,\n          text: JSON.stringify(body, null, 2),\n        },\n      ],\n    }\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return {\n        contents: [\n          {\n            uri,\n            mimeType: NODE_RESOURCE_MIME,\n            text: JSON.stringify({ error: 'node not found', id }),\n          },\n        ],\n      }\n    }\n    throw err\n  }\n}\n\nexport async function readPolicyViolationsResource(\n  client: HttpClient,\n  limit: number = POLICY_VIOLATIONS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ violations: PolicyViolation[] }>(\n    `${corePrefix(project)}/policies/violations`,\n  )\n  const violations = body.violations\n  // Latest first; cap at limit so an exploding violations log doesn't blow\n  // up the resource read. The full file is still on disk for forensic use.\n  const ordered = [...violations].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: POLICY_VIOLATIONS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: violations.length, violations: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\nexport async function readRecentIncidentsResource(\n  client: HttpClient,\n  limit: number = INCIDENTS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n    `${corePrefix(project)}/incidents`,\n  )\n  const events = body.events\n  // ndjson order is append-time = oldest first. Reverse so most-recent leads.\n  const ordered = [...events].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: INCIDENTS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: events.length, events: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\n// Pure helper so the poll loop can be tested without timers. Returns true when\n// the visible state of /incidents has changed in a way subscribers should hear\n// about. Compares total count + the id of the newest event — either is enough\n// on its own, but the pair makes deletes (if they ever happen) survive a\n// missed update.\nexport function incidentsChanged(\n  prev: { total: number; lastId?: string } | null,\n  next: { total: number; lastId?: string },\n): boolean {\n  if (!prev) return false // first observation seeds, doesn't notify\n  if (prev.total !== next.total) return true\n  if (prev.lastId !== next.lastId) return true\n  return false\n}\n\nexport interface RegisterResourcesOptions {\n  // Poll interval for /incidents in ms. 5s by default; 0 disables polling.\n  incidentsPollMs?: number\n  // Project this MCP instance reports against. Unset → core's `default`\n  // project via the legacy unprefixed URLs.\n  project?: string\n}\n\nexport interface ResourceRegistration {\n  // Stops the poll loop. The SDK keeps the registered resources around as\n  // long as the server is alive — calling stop() doesn't unregister them.\n  stop: () => void\n}\n\nexport function registerResources(\n  server: McpServer,\n  client: HttpClient,\n  options: RegisterResourcesOptions = {},\n): ResourceRegistration {\n  const pollMs = options.incidentsPollMs ?? 5000\n  const project = options.project\n\n  // neat://node/<id> — templated. The list callback enumerates current nodes;\n  // the read callback resolves a specific id.\n  server.registerResource(\n    'graph-node',\n    new ResourceTemplate('neat://node/{id}', {\n      list: async () => listNodeResources(client, project),\n    }),\n    {\n      description:\n        'A single graph node by id. Reading returns the node attributes plus its outbound edges as JSON.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async (_uri, variables) => {\n      const raw = variables.id\n      const id = Array.isArray(raw) ? raw[0] : raw\n      if (typeof id !== 'string' || id.length === 0) {\n        throw new Error('neat://node/{id} requires an id')\n      }\n      const decoded = id.includes('%') ? decodeURIComponent(id) : id\n      return readNodeResource(client, decoded, project)\n    },\n  )\n\n  // neat://incidents/recent — static. Subscribers get notifications/resources/\n  // updated on each tick where /incidents has changed.\n  server.registerResource(\n    'incidents-recent',\n    INCIDENTS_URI,\n    {\n      description:\n        'Most recent error events recorded by neat-core, newest first. JSON: { count, total, events[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readRecentIncidentsResource(client, INCIDENTS_DEFAULT_LIMIT, project),\n  )\n\n  // neat://policies/violations — static. Same poll-and-notify pattern as\n  // incidents. Subscribers get resource-updated notifications when the\n  // policy-violations.ndjson grows. ADR-045.\n  server.registerResource(\n    'policies-violations',\n    POLICY_VIOLATIONS_URI,\n    {\n      description:\n        'Current policy violations from policy-violations.ndjson, newest first. JSON: { count, total, violations[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readPolicyViolationsResource(client, POLICY_VIOLATIONS_DEFAULT_LIMIT, project),\n  )\n\n  let stopped = false\n  let timer: NodeJS.Timeout | null = null\n  let lastIncidents: { total: number; lastId?: string } | null = null\n  let lastViolations: { total: number; lastId?: string } | null = null\n\n  const tick = async (): Promise<void> => {\n    if (stopped) return\n    // Incidents poll.\n    try {\n      const incidents = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n        `${corePrefix(project)}/incidents`,\n      )\n      const events = incidents.events\n      const next = {\n        total: incidents.total,\n        lastId: events.length > 0 ? events[events.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastIncidents, next)) {\n        await server.server.sendResourceUpdated({ uri: INCIDENTS_URI }).catch(() => {})\n      }\n      lastIncidents = next\n    } catch {\n      // Core down — keep polling, next tick will catch up.\n    }\n    // Policy-violations poll. Fires the alert action's notifications/\n    // resources/updated for neat://policies/violations subscribers per\n    // ADR-044 §alert. Same change-detection shape as incidents.\n    try {\n      const polBody = await client.get<{ violations: PolicyViolation[] }>(\n        `${corePrefix(project)}/policies/violations`,\n      )\n      const violations = polBody.violations\n      const next = {\n        total: violations.length,\n        lastId:\n          violations.length > 0 ? violations[violations.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastViolations, next)) {\n        await server.server\n          .sendResourceUpdated({ uri: POLICY_VIOLATIONS_URI })\n          .catch(() => {})\n      }\n      lastViolations = next\n    } catch {\n      // Core down or no policies yet — keep polling.\n    }\n  }\n\n  if (pollMs > 0) {\n    // Seed `last` on first tick so we don't fire an \"updated\" notification\n    // when the server first comes up.\n    timer = setInterval(() => {\n      void tick()\n    }, pollMs)\n    if (typeof timer.unref === 'function') timer.unref()\n  }\n\n  return {\n    stop: (): void => {\n      stopped = true\n      if (timer) clearInterval(timer)\n      timer = null\n    },\n  }\n}\n","// Tool implementations. Each one takes an HttpClient + the validated input and\n// returns an MCP CallToolResult routed through formatToolResponse for the\n// three-part shape (NL + structured + footer) per ADR-039 / contract #12.\n// Keeping these as pure functions of (client, input) means tests don't need a\n// running server — just a stub client that returns canned JSON.\n\nimport type {\n  BlastRadiusAffectedNode,\n  BlastRadiusResult,\n  Divergence,\n  DivergenceResult,\n  DivergenceType,\n  ErrorEvent,\n  GraphEdge,\n  GraphNode,\n  HypotheticalAction,\n  PolicyViolation,\n  RootCauseResult,\n  TransitiveDependenciesResult,\n} from '@neat.is/types'\nimport { Provenance } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\nimport {\n  formatEmptyResponse,\n  formatErrorResponse,\n  formatToolResponse,\n  type ToolResponse,\n} from './format.js'\n\nexport type { ToolResponse } from './format.js'\n\n// Project-aware path builder. When `project` is set, route through\n// /projects/<name>/...; otherwise hit the legacy root URL (which the core\n// resolves to project=`default`). Keeping the legacy path means callers\n// running an older core still talk to a known route.\nfunction projectPath(project: string | undefined, suffix: string): string {\n  if (!project) return suffix\n  return `/projects/${encodeURIComponent(project)}${suffix}`\n}\n\n// Most tools want \"node missing → friendly message, anything else → real error\".\nasync function withMissingNodeFallback(\n  fn: () => Promise<ToolResponse>,\n  notFoundMessage: string,\n): Promise<ToolResponse> {\n  try {\n    return await fn()\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return formatEmptyResponse(notFoundMessage)\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RootCauseInput {\n  errorNode: string\n  errorId?: string\n  project?: string\n}\n\nexport async function getRootCause(client: HttpClient, input: RootCauseInput): Promise<ToolResponse> {\n  const qs = input.errorId ? `?errorId=${encodeURIComponent(input.errorId)}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/root-cause/${encodeURIComponent(input.errorNode)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<RootCauseResult>(path)\n    const arrowPath = result.traversalPath.join(' ← ')\n    const provenances = result.edgeProvenances.length\n      ? result.edgeProvenances.join(', ')\n      : '(direct, no edges traversed)'\n    const summary =\n      `Root cause for ${input.errorNode} is ${result.rootCauseNode}. ` +\n      result.rootCauseReason +\n      (result.fixRecommendation ? ` Recommended fix: ${result.fixRecommendation}.` : '')\n    const blockLines = [\n      `Traversal path: ${arrowPath}`,\n      `Edge provenances: ${provenances}`,\n    ]\n    if (result.fixRecommendation) {\n      blockLines.push(`Recommended fix: ${result.fixRecommendation}`)\n    }\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: result.confidence,\n      provenance: result.edgeProvenances.length ? result.edgeProvenances : undefined,\n    })\n  }, `No root cause found for ${input.errorNode}. The node may be healthy, or it may not exist in the graph.`)\n}\n\nexport interface BlastRadiusInput {\n  nodeId: string\n  depth?: number\n  project?: string\n}\n\nexport async function getBlastRadius(\n  client: HttpClient,\n  input: BlastRadiusInput,\n): Promise<ToolResponse> {\n  const qs = input.depth !== undefined ? `?depth=${input.depth}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/blast-radius/${encodeURIComponent(input.nodeId)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<BlastRadiusResult>(path)\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        `${result.origin} has no downstream dependencies. Nothing else would break if it failed.`,\n      )\n    }\n    const sorted = [...result.affectedNodes].sort(\n      (a, b) => a.distance - b.distance || a.nodeId.localeCompare(b.nodeId),\n    )\n    const blockLines = sorted.map(formatBlastEntry)\n    // Worst-case confidence — the path with the lowest cascaded confidence\n    // is the headline number; agents should treat this as \"what's the\n    // weakest reachability NEAT actually knows about?\"\n    const minConfidence = sorted.reduce(\n      (m, n) => Math.min(m, n.confidence),\n      Number.POSITIVE_INFINITY,\n    )\n    const provenances = [...new Set(sorted.map((n) => n.edgeProvenance))]\n    return formatToolResponse({\n      summary: `Blast radius for ${result.origin}: ${result.totalAffected} affected node${result.totalAffected === 1 ? '' : 's'} reachable downstream.`,\n      block: blockLines.join('\\n'),\n      confidence: Number.isFinite(minConfidence) ? minConfidence : undefined,\n      provenance: provenances.length ? provenances : undefined,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction formatBlastEntry(n: BlastRadiusAffectedNode): string {\n  const tag = n.edgeProvenance === Provenance.STALE ? ' [STALE — last seen too long ago]' : ''\n  return `  • ${n.nodeId} (distance ${n.distance}, ${n.edgeProvenance})${tag}`\n}\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\nexport interface DependenciesInput {\n  nodeId: string\n  // BFS depth. Default 3; max 10. Direct-only consumers pass 1.\n  depth?: number\n  project?: string\n}\n\n// Transitive get_dependencies (issue #144). Calls the core endpoint\n// /graph/dependencies/:nodeId?depth=N which BFS-walks outbound. The output\n// groups results by hop so direct dependencies stand out from transitives —\n// agents asked \"what does X depend on?\" usually want the direct list with\n// transitives as context.\nexport async function getDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  const depth = input.depth ?? 3\n  const path = projectPath(\n    input.project,\n    `/graph/dependencies/${encodeURIComponent(input.nodeId)}?depth=${depth}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<TransitiveDependenciesResult>(path)\n    if (result.total === 0) {\n      return formatEmptyResponse(\n        depth === 1\n          ? `${input.nodeId} has no direct dependencies in the graph.`\n          : `${input.nodeId} has no dependencies (BFS to depth ${depth}).`,\n      )\n    }\n    // Group by distance so the structured block reads as concentric rings.\n    const byDistance = new Map<number, typeof result.dependencies>()\n    for (const dep of result.dependencies) {\n      const ring = byDistance.get(dep.distance) ?? []\n      ring.push(dep)\n      byDistance.set(dep.distance, ring)\n    }\n    const blockLines: string[] = []\n    for (const distance of [...byDistance.keys()].sort((a, b) => a - b)) {\n      const label = distance === 1 ? 'Direct (distance 1)' : `Distance ${distance}`\n      blockLines.push(`${label}:`)\n      for (const dep of byDistance.get(distance)!) {\n        blockLines.push(`  • ${dep.nodeId} — ${dep.edgeType} (${dep.provenance})`)\n      }\n    }\n    const provenances = [...new Set(result.dependencies.map((d) => d.provenance))]\n    const directCount = byDistance.get(1)?.length ?? 0\n    const summary =\n      depth === 1\n        ? `${input.nodeId} has ${directCount} direct dependenc${directCount === 1 ? 'y' : 'ies'}.`\n        : `${input.nodeId} has ${result.total} dependenc${result.total === 1 ? 'y' : 'ies'} reachable to depth ${depth} (${directCount} direct).`\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      provenance: provenances,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport async function getObservedDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const edges = await client.get<EdgesResponse>(\n      projectPath(input.project, `/graph/edges/${encodeURIComponent(input.nodeId)}`),\n    )\n    const observed = edges.outbound.filter((e) => e.provenance === Provenance.OBSERVED)\n    if (observed.length === 0) {\n      const hasExtracted = edges.outbound.some((e) => e.provenance === Provenance.EXTRACTED)\n      const note = hasExtracted\n        ? ' Static (EXTRACTED) dependencies exist but no runtime traffic has been seen — is OTel running?'\n        : ''\n      return formatEmptyResponse(`No OBSERVED dependencies for ${input.nodeId}.${note}`)\n    }\n    const blockLines = observed.map((e) => `  • ${e.target} — ${e.type}${edgeMeta(e)}`)\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${observed.length} runtime dependenc${observed.length === 1 ? 'y' : 'ies'} confirmed by OTel.`,\n      block: blockLines.join('\\n'),\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction edgeMeta(e: GraphEdge): string {\n  const bits: string[] = []\n  if (e.signal) {\n    // Prefer the runtime signal numbers — \"saw 1,247 calls, 3 errors\" reads\n    // better than a derived 0.94 confidence.\n    bits.push(`spans=${e.signal.spanCount}`)\n    if (e.signal.errorCount > 0) bits.push(`errors=${e.signal.errorCount}`)\n    if (e.signal.lastObservedAgeMs !== undefined) {\n      bits.push(`age=${formatDuration(e.signal.lastObservedAgeMs)}`)\n    }\n  } else if (e.callCount !== undefined) {\n    bits.push(`callCount=${e.callCount}`)\n  }\n  if (e.lastObserved) bits.push(`lastObserved=${e.lastObserved}`)\n  if (e.confidence !== undefined) bits.push(`confidence=${e.confidence}`)\n  return bits.length ? ` [${bits.join(', ')}]` : ''\n}\n\nfunction formatDuration(ms: number): string {\n  if (ms < 1000) return `${Math.round(ms)}ms`\n  const s = Math.round(ms / 1000)\n  if (s < 60) return `${s}s`\n  const m = Math.round(s / 60)\n  if (m < 60) return `${m}m`\n  const h = Math.round(m / 60)\n  if (h < 48) return `${h}h`\n  return `${Math.round(h / 24)}d`\n}\n\nexport interface IncidentHistoryInput {\n  nodeId: string\n  limit?: number\n  project?: string\n}\n\nexport async function getIncidentHistory(\n  client: HttpClient,\n  input: IncidentHistoryInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n      projectPath(input.project, `/incidents/${encodeURIComponent(input.nodeId)}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(`No incidents recorded against ${input.nodeId}.`)\n    }\n    // ndjson order is append-time = oldest first. Reverse so the most recent\n    // event leads, then trim to the requested limit.\n    const ordered = [...events].reverse().slice(0, input.limit ?? 20)\n    const blockLines: string[] = []\n    for (const ev of ordered) {\n      blockLines.push(`  ${ev.timestamp} — ${ev.service}: ${ev.errorMessage}`)\n      blockLines.push(`    trace=${ev.traceId} span=${ev.spanId}`)\n    }\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${body.total} recorded incident${body.total === 1 ? '' : 's'}; showing the ${ordered.length} most recent.`,\n      block: blockLines.join('\\n'),\n      // ErrorEvents are observation records, not graph edges — provenance is\n      // OBSERVED by definition (the OTel span happened).\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport interface SemanticSearchInput {\n  query: string\n  project?: string\n}\n\ninterface SearchResponse {\n  query: string\n  provider?: 'ollama' | 'transformers' | 'substring'\n  matches: (GraphNode & { score?: number })[]\n}\n\nexport async function semanticSearch(\n  client: HttpClient,\n  input: SemanticSearchInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<SearchResponse>(\n      projectPath(input.project, `/search?q=${encodeURIComponent(input.query)}`),\n    )\n    if (result.matches.length === 0) {\n      return formatEmptyResponse(`No matches for \"${input.query}\".`)\n    }\n    const provider = result.provider ?? 'substring'\n    const blockLines: string[] = []\n    let topScore: number | undefined\n    for (const n of result.matches) {\n      // Embedding tiers attach a cosine score in [0,1]; substring fallback\n      // doesn't, so we elide the score when it's the placeholder 1.\n      const score = provider !== 'substring' && typeof n.score === 'number' ? n.score : undefined\n      const scoreBit = score !== undefined ? ` [score=${score.toFixed(2)}]` : ''\n      if (score !== undefined && (topScore === undefined || score > topScore)) topScore = score\n      blockLines.push(\n        `  • ${n.id} (${n.type}) — ${(n as { name?: string }).name ?? n.id}${scoreBit}`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Found ${result.matches.length} match${result.matches.length === 1 ? '' : 'es'} for \"${input.query}\" via ${provider} provider.`,\n      block: blockLines.join('\\n'),\n      // Top similarity score doubles as a \"how confident is the embedder\n      // about the best match\" signal. Substring provider returns no score —\n      // the footer shows n/a in that case.\n      confidence: topScore,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface GraphDiffInput {\n  againstSnapshot: string\n  project?: string\n}\n\ninterface GraphDiffResponse {\n  base: { exportedAt?: string }\n  current: { exportedAt: string }\n  added: { nodes: GraphNode[]; edges: GraphEdge[] }\n  removed: { nodes: GraphNode[]; edges: GraphEdge[] }\n  changed: {\n    nodes: { id: string; before: GraphNode; after: GraphNode }[]\n    edges: { id: string; before: GraphEdge; after: GraphEdge }[]\n  }\n}\n\nexport async function getGraphDiff(\n  client: HttpClient,\n  input: GraphDiffInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<GraphDiffResponse>(\n      projectPath(\n        input.project,\n        `/graph/diff?against=${encodeURIComponent(input.againstSnapshot)}`,\n      ),\n    )\n    const total =\n      result.added.nodes.length +\n      result.added.edges.length +\n      result.removed.nodes.length +\n      result.removed.edges.length +\n      result.changed.nodes.length +\n      result.changed.edges.length\n    const baseLabel = result.base.exportedAt ?? 'unknown'\n    if (total === 0) {\n      return formatEmptyResponse(\n        `No differences between the current graph and ${input.againstSnapshot} (base exportedAt=${baseLabel}).`,\n      )\n    }\n    const blockLines: string[] = [\n      `  base exportedAt:    ${baseLabel}`,\n      `  current exportedAt: ${result.current.exportedAt}`,\n      '',\n    ]\n    if (result.added.nodes.length || result.added.edges.length) {\n      blockLines.push('Added:')\n      for (const n of result.added.nodes) blockLines.push(`  + node ${n.id} (${n.type})`)\n      for (const e of result.added.edges)\n        blockLines.push(`  + edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.removed.nodes.length || result.removed.edges.length) {\n      blockLines.push('Removed:')\n      for (const n of result.removed.nodes) blockLines.push(`  - node ${n.id} (${n.type})`)\n      for (const e of result.removed.edges)\n        blockLines.push(`  - edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.changed.nodes.length || result.changed.edges.length) {\n      blockLines.push('Changed:')\n      for (const c of result.changed.nodes) {\n        blockLines.push(`  ~ node ${c.id} — ${summariseAttrDiff(c.before, c.after)}`)\n      }\n      for (const c of result.changed.edges) {\n        const provBit =\n          c.before.provenance !== c.after.provenance\n            ? `provenance ${c.before.provenance} → ${c.after.provenance}`\n            : summariseAttrDiff(c.before, c.after)\n        blockLines.push(`  ~ edge ${c.id} — ${provBit}`)\n      }\n    }\n    return formatToolResponse({\n      summary: `Diff against ${input.againstSnapshot}: ${total} change${total === 1 ? '' : 's'} between the snapshot and the live graph.`,\n      block: blockLines.join('\\n').trimEnd(),\n      // Diff results don't have a per-result provenance — the diff spans\n      // every edge type and provenance kind. Footer shows n/a.\n    })\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 400) {\n      return formatErrorResponse(\n        `Could not load snapshot ${input.againstSnapshot}: ${err.message}`,\n      )\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nfunction summariseAttrDiff(\n  before: Record<string, unknown>,\n  after: Record<string, unknown>,\n): string {\n  const keys = new Set([...Object.keys(before), ...Object.keys(after)])\n  const changed: string[] = []\n  for (const k of keys) {\n    if (JSON.stringify(before[k]) !== JSON.stringify(after[k])) changed.push(k)\n  }\n  return changed.length === 0\n    ? 'attributes differ'\n    : `fields changed: ${changed.sort().join(', ')}`\n}\n\nexport interface RecentStaleEdgesInput {\n  limit?: number\n  edgeType?: string\n  project?: string\n}\n\ninterface StaleEventResponse {\n  edgeId: string\n  source: string\n  target: string\n  edgeType: string\n  thresholdMs: number\n  ageMs: number\n  lastObserved: string\n  transitionedAt: string\n}\n\nexport async function getRecentStaleEdges(\n  client: HttpClient,\n  input: RecentStaleEdgesInput,\n): Promise<ToolResponse> {\n  const params = new URLSearchParams()\n  if (input.limit !== undefined) params.set('limit', String(input.limit))\n  if (input.edgeType) params.set('edgeType', input.edgeType)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n\n  try {\n    const body = await client.get<{ count: number; total: number; events: StaleEventResponse[] }>(\n      projectPath(input.project, `/stale-events${qs}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(\n        input.edgeType\n          ? `No stale ${input.edgeType} edges recorded.`\n          : 'No stale-edge transitions recorded yet.',\n      )\n    }\n    const blockLines = events.map(\n      (e) =>\n        `  ${e.transitionedAt} — ${e.source} -[${e.edgeType}]-> ${e.target}` +\n        ` (last seen ${e.lastObserved}, threshold ${formatDuration(e.thresholdMs)})`,\n    )\n    return formatToolResponse({\n      summary: `${events.length} stale-edge transition${events.length === 1 ? '' : 's'} recorded${input.edgeType ? ` for ${input.edgeType}` : ''}.`,\n      block: blockLines.join('\\n'),\n      // STALE by definition — every event is a transition into STALE.\n      provenance: Provenance.STALE,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface CheckPoliciesInput {\n  // 'all' (default) returns every current violation. 'unresolved' is reserved\n  // for future resolution tracking — for the MVP it behaves the same as 'all'.\n  // { policyId } narrows to violations of one named policy.\n  scope?: 'all' | 'unresolved' | { policyId: string }\n  // When provided, dry-run evaluation: return violations that *would* result\n  // if the action were applied. Without it, return current violations.\n  hypotheticalAction?: HypotheticalAction\n  project?: string\n}\n\ninterface PoliciesCheckResponse {\n  allowed: boolean\n  hypotheticalAction?: HypotheticalAction\n  violations: PolicyViolation[]\n}\n\n// check_policies — single MCP tool covering both state-read and dry-run modes\n// per ADR-045. The contract explicitly rejects the audit's two-tool split\n// (evaluate_policy + get_policy_violations); both modes route through here.\nexport async function checkPolicies(\n  client: HttpClient,\n  input: CheckPoliciesInput,\n): Promise<ToolResponse> {\n  try {\n    let violations: PolicyViolation[]\n    let allowed = true\n    let hypothetical: HypotheticalAction | undefined\n\n    if (input.hypotheticalAction) {\n      // Dry-run via POST /policies/check.\n      const body = await postJson<PoliciesCheckResponse>(\n        client,\n        projectPath(input.project, '/policies/check'),\n        { hypotheticalAction: input.hypotheticalAction },\n      )\n      violations = body.violations\n      allowed = body.allowed\n      hypothetical = body.hypotheticalAction\n    } else {\n      // State read via GET /policies/violations. Optional scope filters via\n      // ?policyId=, severity isn't surfaced in the tool input today.\n      const qsParams = new URLSearchParams()\n      if (typeof input.scope === 'object' && 'policyId' in input.scope) {\n        qsParams.set('policyId', input.scope.policyId)\n      }\n      const qs = qsParams.size > 0 ? `?${qsParams.toString()}` : ''\n      const body = await client.get<{ violations: PolicyViolation[] }>(\n        projectPath(input.project, `/policies/violations${qs}`),\n      )\n      violations = body.violations\n      allowed = violations.every((v) => v.onViolation !== 'block')\n    }\n\n    if (violations.length === 0) {\n      return formatEmptyResponse(\n        hypothetical\n          ? `No violations would result from the hypothetical action (${hypothetical.kind}).`\n          : 'No policy violations recorded.',\n      )\n    }\n\n    const blockCount = violations.filter((v) => v.onViolation === 'block').length\n    const summaryParts: string[] = []\n    if (hypothetical) {\n      summaryParts.push(\n        `Hypothetical ${hypothetical.kind} would surface ${violations.length} violation${violations.length === 1 ? '' : 's'}`,\n      )\n    } else {\n      summaryParts.push(\n        `${violations.length} policy violation${violations.length === 1 ? '' : 's'} currently recorded`,\n      )\n    }\n    if (blockCount > 0) {\n      summaryParts.push(`${blockCount} of which block`)\n    }\n    if (!allowed && hypothetical) {\n      summaryParts.push('action denied')\n    }\n    const summary = summaryParts.join('; ') + '.'\n\n    const blockLines = violations.map((v) => {\n      const subject = v.subject.nodeId ?? v.subject.edgeId ?? v.subject.path?.[0] ?? '(global)'\n      return `  • [${v.severity}/${v.onViolation}] ${v.policyName}: ${v.message} — ${subject}`\n    })\n    const severities = [...new Set(violations.map((v) => v.severity))]\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      // Confidence: hypothetical results inherit a 0.7 cap (the engine\n      // can't fully simulate every action shape in MVP); confirmed\n      // violations report 1.00 since the engine ran against current state.\n      confidence: hypothetical ? 0.7 : 1,\n      provenance: severities.join(' '),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\n// ──────────────────────────────────────────────────────────────────────────\n// get_divergences (ADR-060) — the thesis surface\n// ──────────────────────────────────────────────────────────────────────────\n\nexport interface DivergencesInput {\n  type?: ReadonlyArray<DivergenceType>\n  minConfidence?: number\n  node?: string\n  project?: string\n}\n\nfunction buildDivergencesPath(input: DivergencesInput): string {\n  const params = new URLSearchParams()\n  if (input.type && input.type.length > 0) params.set('type', input.type.join(','))\n  if (input.minConfidence !== undefined) {\n    params.set('minConfidence', String(input.minConfidence))\n  }\n  if (input.node) params.set('node', input.node)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n  return projectPath(input.project, `/graph/divergences${qs}`)\n}\n\nfunction formatDivergenceLine(d: Divergence): string {\n  switch (d.type) {\n    case 'missing-observed':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'missing-extracted':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'version-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared ${d.extractedVersion}, observed engine ${d.observedVersion} (${d.compatibility})`\n    case 'host-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared host ${d.extractedHost}, observed host ${d.observedHost}`\n    case 'compat-violation':\n      return `  • [${d.type}] ${d.source} → ${d.target} — ${d.rule.kind}${d.rule.package ? ` (${d.rule.package})` : ''}`\n  }\n}\n\nexport async function getDivergences(\n  client: HttpClient,\n  input: DivergencesInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<DivergenceResult>(buildDivergencesPath(input))\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        'No divergences found between the declared (EXTRACTED) and observed (OBSERVED) views of the graph.',\n      )\n    }\n    // Sorted by confidence descending already; first entry is the headline.\n    const headline = result.divergences[0]!\n    const summary =\n      `Found ${result.totalAffected} divergence${result.totalAffected === 1 ? '' : 's'} between code and production. ` +\n      `Highest-confidence: ${headline.type} on ${headline.source} → ${headline.target}. ${headline.reason}`\n    const blockLines: string[] = []\n    for (const d of result.divergences) {\n      blockLines.push(formatDivergenceLine(d))\n      blockLines.push(`    reason: ${d.reason}`)\n      blockLines.push(`    recommendation: ${d.recommendation}`)\n    }\n    const maxConfidence = result.divergences.reduce(\n      (m, d) => Math.max(m, d.confidence),\n      0,\n    )\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: maxConfidence,\n      // Composite provenance — divergences sit between EXTRACTED and\n      // OBSERVED by construction; that's what makes them divergences.\n      provenance: 'composite (EXTRACTED + OBSERVED)',\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nasync function postJson<T>(\n  client: HttpClient,\n  path: string,\n  body: unknown,\n): Promise<T> {\n  // The base HttpClient interface only exposes get(). For POST we need to\n  // reach into the underlying transport. Most callers pass the client built\n  // by createHttpClient which has post; types are kept minimal so test\n  // stubs don't have to implement post unless the tool needs it.\n  const c = client as HttpClient & { post?: <U>(p: string, b: unknown) => Promise<U> }\n  if (typeof c.post !== 'function') {\n    throw new Error('HttpClient does not support POST — required for check_policies dry-run')\n  }\n  return c.post<T>(path, body)\n}\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nexport interface ListUninstrumentedInput {\n  project?: string\n}\n\ninterface LibraryCoverageResult {\n  library: string\n  coverage: string\n  installedVersion?: string\n  instrumentation_package?: string\n  package_version?: string\n  registration?: string\n  notes?: string\n}\n\nexport async function neatListUninstrumented(\n  client: HttpClient,\n  input: ListUninstrumentedInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<{ libraries: LibraryCoverageResult[] }>(\n      projectPath(input.project, '/extend/list-uninstrumented'),\n    )\n    const libs = result.libraries\n    if (libs.length === 0) {\n      return formatEmptyResponse(\n        'All detected libraries are covered by the auto-instrumentations bundle or the HTTP fallback. No extension needed.',\n      )\n    }\n    const blockLines = libs.map((l) => {\n      const pkgBit = l.instrumentation_package ? ` → ${l.instrumentation_package}@${l.package_version ?? '*'}` : ' → no registry entry'\n      return `  • ${l.library} [${l.coverage}]${pkgBit}${l.notes ? ` — ${l.notes}` : ''}`\n    })\n    return formatToolResponse({\n      summary: `${libs.length} librar${libs.length === 1 ? 'y needs' : 'ies need'} instrumentation beyond the auto-instrumentations bundle.`,\n      block: blockLines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface LookupInstrumentationInput {\n  library: string\n  installedVersion?: string\n  project?: string\n}\n\nexport async function neatLookupInstrumentation(\n  client: HttpClient,\n  input: LookupInstrumentationInput,\n): Promise<ToolResponse> {\n  const qs = input.installedVersion ? `?library=${encodeURIComponent(input.library)}&version=${encodeURIComponent(input.installedVersion)}` : `?library=${encodeURIComponent(input.library)}`\n  try {\n    const result = await client.get<LibraryCoverageResult>(\n      projectPath(input.project, `/extend/lookup${qs}`),\n    )\n    const lines = [\n      `  coverage: ${result.coverage}`,\n      ...(result.instrumentation_package ? [`  instrumentation_package: ${result.instrumentation_package}@${result.package_version ?? '*'}`] : []),\n      ...(result.registration ? [`  registration: ${result.registration}`] : []),\n      ...(result.notes ? [`  notes: ${result.notes}`] : []),\n    ]\n    return formatToolResponse({\n      summary: `Registry entry for ${input.library}: coverage is ${result.coverage}.`,\n      block: lines.join('\\n'),\n    })\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return formatEmptyResponse(`${input.library} is not in the instrumentation registry.`)\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface DescribeProjectInstrumentationInput {\n  project?: string\n}\n\ninterface ProjectInstrumentationState {\n  hookFiles: string[]\n  envNeat: boolean\n  installedDeps: Record<string, string>\n}\n\nexport async function neatDescribeProjectInstrumentation(\n  client: HttpClient,\n  input: DescribeProjectInstrumentationInput,\n): Promise<ToolResponse> {\n  try {\n    const state = await client.get<ProjectInstrumentationState>(\n      projectPath(input.project, '/extend/describe'),\n    )\n    const lines: string[] = [\n      `  hook files:     ${state.hookFiles.length > 0 ? state.hookFiles.join(', ') : '(none — run neat init first)'}`,\n      `  .env.neat:      ${state.envNeat ? 'present' : 'absent'}`,\n    ]\n    const depEntries = Object.entries(state.installedDeps)\n    if (depEntries.length > 0) {\n      lines.push('  installed OTel deps:')\n      for (const [pkg, ver] of depEntries) {\n        lines.push(`    ${pkg}@${ver}`)\n      }\n    } else {\n      lines.push('  installed OTel deps: (none)')\n    }\n    const ready = state.hookFiles.length > 0\n    return formatToolResponse({\n      summary: ready\n        ? `Project has ${state.hookFiles.length} instrumentation hook file${state.hookFiles.length === 1 ? '' : 's'} and is ready for neat_apply_extension.`\n        : 'Project has no instrumentation hook files. Run neat init before extending.',\n      block: lines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface ApplyExtensionInput {\n  library: string\n  instrumentation_package: string\n  version: string\n  registration_snippet: string\n  project?: string\n}\n\ninterface ExtensionApplyResult {\n  library: string\n  filesTouched: string[]\n  depsAdded: string[]\n  installOutput: string\n  alreadyApplied: boolean\n}\n\nexport async function neatApplyExtension(\n  client: HttpClient,\n  input: ApplyExtensionInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await postJson<ExtensionApplyResult>(\n      client,\n      projectPath(input.project, '/extend/apply'),\n      {\n        library: input.library,\n        instrumentation_package: input.instrumentation_package,\n        version: input.version,\n        registration_snippet: input.registration_snippet,\n      },\n    )\n    if (result.alreadyApplied) {\n      return formatEmptyResponse(\n        `${input.library} instrumentation is already applied — no changes made.`,\n      )\n    }\n    const lines = [\n      `  files touched: ${result.filesTouched.join(', ') || '(none)'}`,\n      `  deps added:    ${result.depsAdded.join(', ') || '(none)'}`,\n      `  install:       ${result.installOutput}`,\n    ]\n    return formatToolResponse({\n      summary: `Applied ${input.instrumentation_package} for ${input.library}. ${result.filesTouched.length} file${result.filesTouched.length === 1 ? '' : 's'} touched, logged to ~/.neat/extend-log.ndjson.`,\n      block: lines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface DryRunExtensionInput {\n  library: string\n  instrumentation_package: string\n  version: string\n  registration_snippet: string\n  project?: string\n}\n\ninterface ExtensionDiff {\n  library: string\n  filesTouched: string[]\n  depsToAdd: string[]\n  packageJsonPatch: object\n  templatePatch: string\n}\n\nexport async function neatDryRunExtension(\n  client: HttpClient,\n  input: DryRunExtensionInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await postJson<ExtensionDiff>(\n      client,\n      projectPath(input.project, '/extend/dry-run'),\n      {\n        library: input.library,\n        instrumentation_package: input.instrumentation_package,\n        version: input.version,\n        registration_snippet: input.registration_snippet,\n      },\n    )\n    const lines = [\n      `  files that would be touched: ${result.filesTouched.join(', ') || '(none)'}`,\n      `  deps to add:                 ${result.depsToAdd.join(', ') || '(none)'}`,\n      `  hook file patch:             ${result.templatePatch}`,\n    ]\n    return formatToolResponse({\n      summary: `Dry run for ${input.library}: ${result.filesTouched.length} file${result.filesTouched.length === 1 ? '' : 's'} would be touched. No changes made.`,\n      block: lines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RollbackExtensionInput {\n  library: string\n  project?: string\n}\n\nexport async function neatRollbackExtension(\n  client: HttpClient,\n  input: RollbackExtensionInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await postJson<{ undone: boolean; message: string }>(\n      client,\n      projectPath(input.project, '/extend/rollback'),\n      { library: input.library },\n    )\n    if (!result.undone) {\n      return formatEmptyResponse(\n        `No prior apply found for ${input.library} — nothing to roll back.`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Rolled back instrumentation for ${input.library}. ${result.message}. Run your package manager install to sync the lockfile.`,\n      block: `  result: ${result.message}`,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n","// Standardized three-part response format for every MCP tool (ADR-039,\n// issue #143). Output shape:\n//\n//   {summary — NL paragraph: what was found, why it matters}\n//\n//   {block — typed payload, formatted}\n//\n//   confidence: 0.94 · provenance: OBSERVED\n//\n// Empty result → footer reads \"confidence: n/a · provenance: n/a\". Every tool\n// in packages/mcp/src/tools.ts routes through this helper so consumers get a\n// consistent shape — agents can pattern-match on the footer to know how much\n// to trust the answer.\n\nexport interface ToolResponse {\n  [x: string]: unknown\n  content: { type: 'text'; text: string }[]\n  isError?: boolean\n}\n\nexport interface FormatToolResponseInput {\n  // NL paragraph. One or two sentences. What was found and why it matters.\n  summary: string\n  // Structured block. The formatted typed payload — usually a bullet list,\n  // sometimes a multi-section breakdown. May be empty when the summary\n  // already conveys everything.\n  block?: string\n  // Per-result confidence in [0, 1]. Undefined → footer reads \"n/a\".\n  confidence?: number\n  // Per-result provenance. Single value, or an array if the result spans\n  // mixed provenances (e.g. a path of OBSERVED + EXTRACTED edges). Undefined\n  // → footer reads \"n/a\".\n  provenance?: string | string[]\n  // Set on transport / 5xx errors. Routes through ToolResponse.isError so\n  // MCP clients can surface a non-\"normal\" return.\n  isError?: boolean\n}\n\nfunction formatFooter(\n  confidence: number | undefined,\n  provenance: string | string[] | undefined,\n): string {\n  const c = confidence === undefined ? 'n/a' : confidence.toFixed(2)\n  const p =\n    provenance === undefined\n      ? 'n/a'\n      : Array.isArray(provenance)\n        ? [...new Set(provenance)].join(', ')\n        : provenance\n  return `confidence: ${c} · provenance: ${p}`\n}\n\nexport function formatToolResponse(input: FormatToolResponseInput): ToolResponse {\n  const sections: string[] = [input.summary.trim()]\n  if (input.block && input.block.trim().length > 0) {\n    sections.push(input.block.trimEnd())\n  }\n  sections.push(formatFooter(input.confidence, input.provenance))\n  const text = sections.join('\\n\\n')\n  return {\n    content: [{ type: 'text', text }],\n    ...(input.isError ? { isError: true } : {}),\n  }\n}\n\n// Convenience for the \"node not found / empty graph\" path. Keeps the\n// three-part shape (summary still landed) but sets the footer to n/a / n/a\n// since there's nothing to confidence-tag or provenance-tag.\nexport function formatEmptyResponse(summary: string): ToolResponse {\n  return formatToolResponse({ summary })\n}\n\n// Convenience for transport / 5xx errors at the MCP boundary. isError set\n// so MCP clients route the response into their error path.\nexport function formatErrorResponse(message: string): ToolResponse {\n  return formatToolResponse({ summary: message, isError: true 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+{"version":3,"sources":["../src/index.ts","../src/base-url.ts","../src/client.ts","../src/resources.ts","../src/tools.ts","../src/format.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { McpServer, type ToolCallback } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js'\nimport { z } from 'zod'\nimport {\n  CheckPoliciesScopeSchema,\n  DivergenceTypeSchema,\n  HypotheticalActionSchema,\n  type MCPToolName,\n} from '@neat.is/types'\nimport { resolveBaseUrl } from './base-url.js'\nimport { createHttpClient } from './client.js'\nimport { registerResources } from './resources.js'\nimport {\n  checkPolicies,\n  getBlastRadius,\n  getDependencies,\n  getDivergences,\n  getGraphDiff,\n  getIncidentHistory,\n  getObservedDependencies,\n  getRecentStaleEdges,\n  getRootCause,\n  neatApplyExtension,\n  neatDescribeProjectInstrumentation,\n  neatDryRunExtension,\n  neatListUninstrumented,\n  neatLookupInstrumentation,\n  neatRollbackExtension,\n  semanticSearch,\n} from './tools.js'\n\nconst baseUrl = resolveBaseUrl()\n// ADR-073 §3 — carry the operator's bearer to a secured core. Sourced from\n// NEAT_AUTH_TOKEN, the same env the daemon enforces against; empty/unset\n// keeps the header off so a loopback dev core stays reachable.\nconst authToken = process.env.NEAT_AUTH_TOKEN\nconst client = createHttpClient(baseUrl, authToken && authToken.length > 0 ? authToken : undefined)\n\n// `NEAT_DEFAULT_PROJECT` is the implicit project for tool calls that don't\n// pass a `project` arg. Unset means \"use the core's `default` project\" — we\n// route those calls through the legacy unprefixed URL so an older core (one\n// that predates #83) still gets the request it expects.\nconst defaultProject = process.env.NEAT_DEFAULT_PROJECT\nconst projectFor = (input: { project?: string }): string | undefined =>\n  input.project ?? defaultProject\n\nconst projectField = z\n  .string()\n  .optional()\n  .describe(\n    'Project name when the core hosts more than one (set NEAT_PROJECTS=...). Omit to use the default project.',\n  )\n\nconst server = new McpServer({\n  name: 'neat',\n  version: '0.1.0',\n})\n\n// Register every MCP tool through this wrapper, not server.tool directly.\n// The tool name is constrained to MCP_TOOL_NAMES in @neat.is/types — add the\n// name there first or this won't compile. The contracts audit also checks\n// that registrations and the manifest match both ways, so the tool surface\n// can't drift from the contract again.\nconst registerTool = <Args extends z.ZodRawShape>(\n  name: MCPToolName,\n  description: string,\n  paramsSchema: Args,\n  cb: ToolCallback<Args>,\n): ReturnType<typeof server.tool> => server.tool(name, description, paramsSchema, cb)\n\nregisterTool(\n  'get_root_cause',\n  'Trace a failing node up its dependency graph to find the underlying cause. Use this when something is breaking and you want to know which upstream component is the actual culprit.',\n  {\n    errorNode: z\n      .string()\n      .describe('Graph node id where the error surfaced, e.g. \"database:payments-db\"'),\n    errorId: z\n      .string()\n      .optional()\n      .describe('Specific error event id from incident history; if set, the result is coloured with that error message'),\n    project: projectField,\n  },\n  async (input) => getRootCause(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_blast_radius',\n  'List every node downstream of the given node — what would break if this node failed or was redeployed.',\n  {\n    nodeId: z.string().describe('Graph node id to compute blast radius from'),\n    depth: z\n      .number()\n      .int()\n      .nonnegative()\n      .max(20)\n      .optional()\n      .describe('Max BFS depth (default 10)'),\n    project: projectField,\n  },\n  async (input) => getBlastRadius(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_dependencies',\n  'List the transitive outgoing dependencies of a node, BFS to depth N (default 3, max 10). Each result carries distance, edge type, and provenance — both static (EXTRACTED) and runtime (OBSERVED). Pass depth=1 for direct-only.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    depth: z\n      .number()\n      .int()\n      .min(1)\n      .max(10)\n      .optional()\n      .describe('BFS depth (default 3, max 10). depth=1 returns direct dependencies only.'),\n    project: projectField,\n  },\n  async (input) => getDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_observed_dependencies',\n  'List only the runtime (OBSERVED via OTel) outgoing dependencies of a node. Use this to compare what code SAYS the service depends on vs what production actually does.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    project: projectField,\n  },\n  async (input) => getObservedDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_incident_history',\n  'Return recent OTel error events recorded against a node, most recent first.',\n  {\n    nodeId: z.string().describe('Graph node id to query'),\n    limit: z.number().int().positive().max(100).optional().describe('Max events to return (default 20)'),\n    project: projectField,\n  },\n  async (input) => getIncidentHistory(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'semantic_search',\n  'Search nodes by natural-language query. Uses embedding vectors when an embedder is available (Ollama nomic-embed-text → in-process MiniLM → substring fallback) — phrase the query the way you would describe what you want.',\n  {\n    query: z.string().describe('Free-text query, e.g. \"service handling checkout payments\"'),\n    project: projectField,\n  },\n  async (input) => semanticSearch(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_graph_diff',\n  'Diff a saved graph snapshot against the current live graph. Useful for change reviews and post-incidents — answers \"what changed in the architecture between then and now.\" Returns added/removed/changed nodes and edges with both snapshot timestamps.',\n  {\n    againstSnapshot: z\n      .string()\n      .describe(\n        'Path or http(s) URL of the snapshot to diff against (the \"before\" state). The current graph is the \"after\".',\n      ),\n    project: projectField,\n  },\n  async (input) => getGraphDiff(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_recent_stale_edges',\n  'List the most recent OBSERVED → STALE edge transitions. Use this to spot integrations that have gone quiet — a CALLS edge that just went stale typically means an upstream stopped calling, not that the link is healthy.',\n  {\n    limit: z\n      .number()\n      .int()\n      .positive()\n      .max(200)\n      .optional()\n      .describe('Max events to return (default 50)'),\n    edgeType: z\n      .string()\n      .optional()\n      .describe('Filter by edge type — e.g. \"CALLS\" or \"CONNECTS_TO\"'),\n    project: projectField,\n  },\n  async (input) => getRecentStaleEdges(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_divergences',\n  \"Returns places where what the code declares (EXTRACTED) doesn't match what production observed (OBSERVED). The single most NEAT-shaped query — the one that justifies the whole graph. Use when the user asks 'is anything weird?' or 'what does production do that the code doesn't?' or 'find me a bug' on an unfamiliar codebase. Returns divergences ranked by confidence × severity. Prefer this over `get_root_cause` when no specific node is failing.\",\n  {\n    type: z\n      .array(DivergenceTypeSchema)\n      .optional()\n      .describe(\n        'Filter by divergence type. One or more of: missing-observed, missing-extracted, version-mismatch, host-mismatch, compat-violation. Omit for all.',\n      ),\n    minConfidence: z\n      .number()\n      .min(0)\n      .max(1)\n      .optional()\n      .describe('Drop divergences below this confidence threshold (0.0 - 1.0).'),\n    node: z\n      .string()\n      .optional()\n      .describe('Scope to divergences involving this node id (as source or target).'),\n    project: projectField,\n  },\n  async (input) =>\n    getDivergences(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'check_policies',\n  'Inspect or dry-run the project\\'s policy.json. Without hypotheticalAction, returns currently-recorded violations. With hypotheticalAction, returns violations that would result if the action were applied. Architectural assertions in five shapes (structural / compatibility / provenance / ownership / blast-radius).',\n  {\n    scope: CheckPoliciesScopeSchema.optional().describe(\n      'Narrow to a subset. Default \"all\".',\n    ),\n    hypotheticalAction: HypotheticalActionSchema.optional().describe(\n      'Dry-run mode: simulate the action and return resulting violations. Omit for current state.',\n    ),\n    project: projectField,\n  },\n  async (input) =>\n    checkPolicies(client, {\n      ...input,\n      project: projectFor(input),\n    } as Parameters<typeof checkPolicies>[1]),\n)\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nregisterTool(\n  'neat_list_uninstrumented',\n  'List libraries in the project that need instrumentation beyond the auto-instrumentations bundle. Returns first-party, third-party, and gap libraries that require an explicit instrumentation package.',\n  { project: projectField },\n  async (input) => neatListUninstrumented(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_lookup_instrumentation',\n  'Look up the registry entry for a specific library. Returns the canonical instrumentation package, version, and registration snippet if one exists.',\n  {\n    library: z.string().describe('npm package name, e.g. \"@prisma/client\"'),\n    installedVersion: z.string().optional().describe('Installed version for range matching'),\n    project: projectField,\n  },\n  async (input) => neatLookupInstrumentation(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_describe_project_instrumentation',\n  'Describe the current state of OTel instrumentation in the project: which hook files exist, whether .env.neat is present, which OTel deps are installed.',\n  { project: projectField },\n  async (input) => neatDescribeProjectInstrumentation(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_apply_extension',\n  'Install an instrumentation package and splice its registration into the existing OTel hook file. Idempotent — calling twice with the same args is a no-op. Only modifies instrumentation files, package.json, and the lockfile (via the project package manager).',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array, e.g. \"instrumentations.push(new PrismaInstrumentation())\"'),\n    project: projectField,\n  },\n  async (input) => neatApplyExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_dry_run_extension',\n  'Preview what neat_apply_extension would do without making any changes. Returns the exact file diff, deps to add, and install command.',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array'),\n    project: projectField,\n  },\n  async (input) => neatDryRunExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_rollback_extension',\n  'Undo the last neat_apply_extension for a given library. Removes the dep from package.json and the registration from the hook file. Does not re-run the package manager — run install manually to sync the lockfile.',\n  {\n    library: z.string().describe('The library whose instrumentation should be rolled back'),\n    project: projectField,\n  },\n  async (input) => neatRollbackExtension(client, { ...input, project: projectFor(input) }),\n)\n\n// Resources sit alongside tools — same data, different access pattern. Read\n// the per-node resource for raw attrs+edges JSON; subscribe to the incidents\n// resource to be notified when new errors land. The tools above are unchanged.\nconst incidentsPollMs = process.env.NEAT_RESOURCE_POLL_MS\n  ? Number(process.env.NEAT_RESOURCE_POLL_MS)\n  : undefined\nconst resourceRegistration = registerResources(server, client, {\n  ...(incidentsPollMs !== undefined ? { incidentsPollMs } : {}),\n  ...(defaultProject ? { project: defaultProject } : {}),\n})\n\nasync function main(): Promise<void> {\n  const transport = new StdioServerTransport()\n  await server.connect(transport)\n}\n\nconst stopPolling = (): void => {\n  resourceRegistration.stop()\n}\nprocess.on('SIGTERM', stopPolling)\nprocess.on('SIGINT', stopPolling)\n\nmain().catch((err) => {\n  console.error(err)\n  process.exit(1)\n})\n","// Resolve the daemon URL the MCP server talks to.\n//\n// Under the per-project daemon model (ADR-096 / docs/contracts/project-daemon.md)\n// each project runs its own daemon on its own ports and records them in\n// `<projectRoot>/neat-out/daemon.json`. The MCP server points at the daemon for\n// the project it was launched in, so resolution walks up from the cwd to the\n// nearest `neat-out/daemon.json` and uses its REST port. An explicit\n// `NEAT_CORE_URL` / `NEAT_API_URL` still wins — that's how the hosted/prod\n// substrate pins the MCP server at a fixed daemon — and the canonical loopback\n// default catches the case where neither the env nor a daemon record is present.\n//\n// `NEAT_API_URL` is honored as an accepted alias so configs written by older\n// `neat skill` versions — which emitted `NEAT_API_URL` — still reach the daemon\n// (#488). `NEAT_CORE_URL` wins when both are set.\n//\n// Lives in its own module so the resolution is testable without importing\n// index.ts, which starts the stdio transport on load.\nimport { readFileSync } from 'node:fs'\nimport { dirname, join } from 'node:path'\n\nconst DEFAULT_BASE_URL = 'http://localhost:8080'\n\n// The slice of `neat-out/daemon.json` the MCP server depends on. The full record\n// (pid, projectPath, otlp/web ports, …) is owned by the daemon writer; the MCP\n// server only needs the REST port and the liveness status. We read the file as\n// plain JSON rather than importing the writer's type so this stays decoupled\n// from the daemon package that owns the schema.\ninterface DaemonRecordShape {\n  status?: unknown\n  ports?: { rest?: unknown }\n}\n\n// Read the REST base URL out of a project's `neat-out/daemon.json`, walking up\n// from `cwd` to the filesystem root to find the nearest one. Returns undefined\n// for every failure mode — no file, unreadable, malformed JSON, a stopped\n// daemon, or a missing/invalid REST port — so the caller falls through to the\n// next precedence level rather than the MCP server failing to start.\nfunction resolveFromDaemonRecord(cwd: string): string | undefined {\n  let dir = cwd\n  // Walk parents until the path stops changing (the filesystem root, where\n  // dirname() is a fixed point).\n  for (;;) {\n    const url = readDaemonRecord(join(dir, 'neat-out', 'daemon.json'))\n    if (url !== undefined) return url\n\n    const parent = dirname(dir)\n    if (parent === dir) return undefined\n    dir = parent\n  }\n}\n\nfunction readDaemonRecord(path: string): string | undefined {\n  let raw: string\n  try {\n    raw = readFileSync(path, 'utf8')\n  } catch {\n    // No daemon.json here (the common case while walking up). Keep looking.\n    return undefined\n  }\n\n  let record: DaemonRecordShape\n  try {\n    record = JSON.parse(raw) as DaemonRecordShape\n  } catch {\n    // A daemon.json that exists but is garbage: a daemon caught mid-write, a\n    // truncated file. Treat it as absent rather than crashing the MCP server.\n    return undefined\n  }\n\n  if (record == null || typeof record !== 'object') return undefined\n  // A daemon that has marked itself stopped no longer answers on its ports.\n  if (record.status === 'stopped') return undefined\n\n  const rest = record.ports?.rest\n  if (typeof rest !== 'number' || !Number.isInteger(rest) || rest <= 0 || rest > 65535) {\n    return undefined\n  }\n\n  return `http://localhost:${rest}`\n}\n\nexport function resolveBaseUrl(\n  env: NodeJS.ProcessEnv = process.env,\n  cwd: string = process.cwd(),\n): string {\n  const override = env.NEAT_CORE_URL ?? env.NEAT_API_URL\n  if (override) return override\n\n  return resolveFromDaemonRecord(cwd) ?? DEFAULT_BASE_URL\n}\n","// Thin HTTP client for the neat-core REST surface. Tools call out via this\n// instead of fetch() directly so tests can swap in a stub implementation\n// without monkey-patching globals.\n\nexport interface HttpClient {\n  get<T>(path: string): Promise<T>\n  // POST is optional on the interface so test stubs that only need GET don't\n  // have to implement it. Production createHttpClient always provides it.\n  post?<T>(path: string, body: unknown): Promise<T>\n}\n\n// ADR-073 §3 — the MCP server is a first-party read client, so it carries the\n// operator's bearer on every call the same way the CLI does. `bearerToken`\n// comes from `NEAT_AUTH_TOKEN` (sourced once in index.ts). Empty / undefined\n// keeps the header off, so an unauthenticated loopback dev daemon still works.\nexport function createHttpClient(baseUrl: string, bearerToken?: string): HttpClient {\n  const root = baseUrl.replace(/\\/$/, '')\n  const authHeader =\n    bearerToken && bearerToken.length > 0\n      ? { authorization: `Bearer ${bearerToken}` }\n      : {}\n  return {\n    async get<T>(path: string): Promise<T> {\n      const res = await fetch(`${root}${path}`, { headers: { ...authHeader } })\n      if (!res.ok) {\n        const body = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on GET ${path}: ${body}`)\n      }\n      return (await res.json()) as T\n    },\n    async post<T>(path: string, body: unknown): Promise<T> {\n      const res = await fetch(`${root}${path}`, {\n        method: 'POST',\n        headers: { 'content-type': 'application/json', ...authHeader },\n        body: JSON.stringify(body),\n      })\n      if (!res.ok) {\n        const text = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on POST ${path}: ${text}`)\n      }\n      return (await res.json()) as T\n    },\n  }\n}\n\nexport class HttpError extends Error {\n  constructor(\n    public readonly status: number,\n    message: string,\n  ) {\n    super(message)\n    this.name = 'HttpError'\n  }\n}\n","// MCP Resources — additive surface alongside the eight tools. Two resources:\n//\n//   neat://node/<id>          — one resource per graph node. Read returns the\n//                                node attributes plus its outbound edges.\n//   neat://incidents/recent   — most recent error events. Pollable by the SDK\n//                                via subscribe; we send `notifications/resources/\n//                                updated` when /incidents grows.\n//\n// Pure read helpers are exported so tests can exercise them without spinning up\n// an MCP transport. `registerResources()` does the SDK wiring + the poll loop.\n\nimport type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport {\n  ResourceTemplate,\n} from '@modelcontextprotocol/sdk/server/mcp.js'\nimport type {\n  ListResourcesResult,\n  ReadResourceResult,\n} from '@modelcontextprotocol/sdk/types.js'\nimport type { ErrorEvent, GraphEdge, GraphNode, PolicyViolation } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\ninterface SerializedGraph {\n  nodes: GraphNode[]\n  edges: GraphEdge[]\n}\n\nconst NODE_RESOURCE_MIME = 'application/json'\nconst INCIDENTS_URI = 'neat://incidents/recent'\nconst INCIDENTS_DEFAULT_LIMIT = 50\nconst POLICY_VIOLATIONS_URI = 'neat://policies/violations'\nconst POLICY_VIOLATIONS_DEFAULT_LIMIT = 100\n\nfunction nodeUri(id: string): string {\n  // Node ids contain `:` which RFC 6570 percent-encodes; doing it explicitly\n  // here keeps the URI we hand the SDK identical to what `list` produces.\n  return `neat://node/${encodeURIComponent(id)}`\n}\n\n// Project-aware URL prefix for the underlying core. When unset, hit the\n// legacy unprefixed routes (which the core resolves to project=`default`).\nfunction corePrefix(project: string | undefined): string {\n  return project ? `/projects/${encodeURIComponent(project)}` : ''\n}\n\nfunction nameFromAttrs(attrs: GraphNode): string {\n  return (attrs as { name?: string }).name ?? attrs.id\n}\n\nexport async function listNodeResources(\n  client: HttpClient,\n  project?: string,\n): Promise<ListResourcesResult> {\n  const graph = await client.get<SerializedGraph>(`${corePrefix(project)}/graph`)\n  return {\n    resources: graph.nodes.map((n) => ({\n      uri: nodeUri(n.id),\n      name: nameFromAttrs(n),\n      description: `${n.type} — ${nameFromAttrs(n)}`,\n      mimeType: NODE_RESOURCE_MIME,\n    })),\n  }\n}\n\nexport async function readNodeResource(\n  client: HttpClient,\n  id: string,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const uri = nodeUri(id)\n  const prefix = corePrefix(project)\n  try {\n    const [nodeBody, edges] = await Promise.all([\n      client.get<{ node: GraphNode }>(`${prefix}/graph/node/${encodeURIComponent(id)}`),\n      client.get<EdgesResponse>(`${prefix}/graph/edges/${encodeURIComponent(id)}`),\n    ])\n    const body = {\n      node: nodeBody.node,\n      // Outbound only — the issue spec says \"attrs + outbound edges\". Inbound\n      // edges are still reachable via the other endpoint and would double the\n      // payload for hub nodes (e.g. a shared database).\n      outboundEdges: edges.outbound,\n    }\n    return {\n      contents: [\n        {\n          uri,\n          mimeType: NODE_RESOURCE_MIME,\n          text: JSON.stringify(body, null, 2),\n        },\n      ],\n    }\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return {\n        contents: [\n          {\n            uri,\n            mimeType: NODE_RESOURCE_MIME,\n            text: JSON.stringify({ error: 'node not found', id }),\n          },\n        ],\n      }\n    }\n    throw err\n  }\n}\n\nexport async function readPolicyViolationsResource(\n  client: HttpClient,\n  limit: number = POLICY_VIOLATIONS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ violations: PolicyViolation[] }>(\n    `${corePrefix(project)}/policies/violations`,\n  )\n  const violations = body.violations\n  // Latest first; cap at limit so an exploding violations log doesn't blow\n  // up the resource read. The full file is still on disk for forensic use.\n  const ordered = [...violations].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: POLICY_VIOLATIONS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: violations.length, violations: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\nexport async function readRecentIncidentsResource(\n  client: HttpClient,\n  limit: number = INCIDENTS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n    `${corePrefix(project)}/incidents`,\n  )\n  const events = body.events\n  // ndjson order is append-time = oldest first. Reverse so most-recent leads.\n  const ordered = [...events].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: INCIDENTS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: events.length, events: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\n// Pure helper so the poll loop can be tested without timers. Returns true when\n// the visible state of /incidents has changed in a way subscribers should hear\n// about. Compares total count + the id of the newest event — either is enough\n// on its own, but the pair makes deletes (if they ever happen) survive a\n// missed update.\nexport function incidentsChanged(\n  prev: { total: number; lastId?: string } | null,\n  next: { total: number; lastId?: string },\n): boolean {\n  if (!prev) return false // first observation seeds, doesn't notify\n  if (prev.total !== next.total) return true\n  if (prev.lastId !== next.lastId) return true\n  return false\n}\n\nexport interface RegisterResourcesOptions {\n  // Poll interval for /incidents in ms. 5s by default; 0 disables polling.\n  incidentsPollMs?: number\n  // Project this MCP instance reports against. Unset → core's `default`\n  // project via the legacy unprefixed URLs.\n  project?: string\n}\n\nexport interface ResourceRegistration {\n  // Stops the poll loop. The SDK keeps the registered resources around as\n  // long as the server is alive — calling stop() doesn't unregister them.\n  stop: () => void\n}\n\nexport function registerResources(\n  server: McpServer,\n  client: HttpClient,\n  options: RegisterResourcesOptions = {},\n): ResourceRegistration {\n  const pollMs = options.incidentsPollMs ?? 5000\n  const project = options.project\n\n  // neat://node/<id> — templated. The list callback enumerates current nodes;\n  // the read callback resolves a specific id.\n  server.registerResource(\n    'graph-node',\n    new ResourceTemplate('neat://node/{id}', {\n      list: async () => listNodeResources(client, project),\n    }),\n    {\n      description:\n        'A single graph node by id. Reading returns the node attributes plus its outbound edges as JSON.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async (_uri, variables) => {\n      const raw = variables.id\n      const id = Array.isArray(raw) ? raw[0] : raw\n      if (typeof id !== 'string' || id.length === 0) {\n        throw new Error('neat://node/{id} requires an id')\n      }\n      const decoded = id.includes('%') ? decodeURIComponent(id) : id\n      return readNodeResource(client, decoded, project)\n    },\n  )\n\n  // neat://incidents/recent — static. Subscribers get notifications/resources/\n  // updated on each tick where /incidents has changed.\n  server.registerResource(\n    'incidents-recent',\n    INCIDENTS_URI,\n    {\n      description:\n        'Most recent error events recorded by neat-core, newest first. JSON: { count, total, events[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readRecentIncidentsResource(client, INCIDENTS_DEFAULT_LIMIT, project),\n  )\n\n  // neat://policies/violations — static. Same poll-and-notify pattern as\n  // incidents. Subscribers get resource-updated notifications when the\n  // policy-violations.ndjson grows. ADR-045.\n  server.registerResource(\n    'policies-violations',\n    POLICY_VIOLATIONS_URI,\n    {\n      description:\n        'Current policy violations from policy-violations.ndjson, newest first. JSON: { count, total, violations[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readPolicyViolationsResource(client, POLICY_VIOLATIONS_DEFAULT_LIMIT, project),\n  )\n\n  let stopped = false\n  let timer: NodeJS.Timeout | null = null\n  let lastIncidents: { total: number; lastId?: string } | null = null\n  let lastViolations: { total: number; lastId?: string } | null = null\n\n  const tick = async (): Promise<void> => {\n    if (stopped) return\n    // Incidents poll.\n    try {\n      const incidents = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n        `${corePrefix(project)}/incidents`,\n      )\n      const events = incidents.events\n      const next = {\n        total: incidents.total,\n        lastId: events.length > 0 ? events[events.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastIncidents, next)) {\n        await server.server.sendResourceUpdated({ uri: INCIDENTS_URI }).catch(() => {})\n      }\n      lastIncidents = next\n    } catch {\n      // Core down — keep polling, next tick will catch up.\n    }\n    // Policy-violations poll. Fires the alert action's notifications/\n    // resources/updated for neat://policies/violations subscribers per\n    // ADR-044 §alert. Same change-detection shape as incidents.\n    try {\n      const polBody = await client.get<{ violations: PolicyViolation[] }>(\n        `${corePrefix(project)}/policies/violations`,\n      )\n      const violations = polBody.violations\n      const next = {\n        total: violations.length,\n        lastId:\n          violations.length > 0 ? violations[violations.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastViolations, next)) {\n        await server.server\n          .sendResourceUpdated({ uri: POLICY_VIOLATIONS_URI })\n          .catch(() => {})\n      }\n      lastViolations = next\n    } catch {\n      // Core down or no policies yet — keep polling.\n    }\n  }\n\n  if (pollMs > 0) {\n    // Seed `last` on first tick so we don't fire an \"updated\" notification\n    // when the server first comes up.\n    timer = setInterval(() => {\n      void tick()\n    }, pollMs)\n    if (typeof timer.unref === 'function') timer.unref()\n  }\n\n  return {\n    stop: (): void => {\n      stopped = true\n      if (timer) clearInterval(timer)\n      timer = null\n    },\n  }\n}\n","// Tool implementations. Each one takes an HttpClient + the validated input and\n// returns an MCP CallToolResult routed through formatToolResponse for the\n// three-part shape (NL + structured + footer) per ADR-039 / contract #12.\n// Keeping these as pure functions of (client, input) means tests don't need a\n// running server — just a stub client that returns canned JSON.\n\nimport type {\n  BlastRadiusAffectedNode,\n  BlastRadiusResult,\n  Divergence,\n  DivergenceResult,\n  DivergenceType,\n  ErrorEvent,\n  GraphEdge,\n  GraphNode,\n  HypotheticalAction,\n  PolicyViolation,\n  RootCauseResult,\n  TransitiveDependenciesResult,\n} from '@neat.is/types'\nimport { Provenance } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\nimport {\n  formatEmptyResponse,\n  formatErrorResponse,\n  formatToolResponse,\n  type ToolResponse,\n} from './format.js'\n\nexport type { ToolResponse } from './format.js'\n\n// Project-aware path builder. When `project` is set, route through\n// /projects/<name>/...; otherwise hit the legacy root URL (which the core\n// resolves to project=`default`). Keeping the legacy path means callers\n// running an older core still talk to a known route.\nfunction projectPath(project: string | undefined, suffix: string): string {\n  if (!project) return suffix\n  return `/projects/${encodeURIComponent(project)}${suffix}`\n}\n\n// Most tools want \"node missing → friendly message, anything else → real error\".\nasync function withMissingNodeFallback(\n  fn: () => Promise<ToolResponse>,\n  notFoundMessage: string,\n): Promise<ToolResponse> {\n  try {\n    return await fn()\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return formatEmptyResponse(notFoundMessage)\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RootCauseInput {\n  errorNode: string\n  errorId?: string\n  project?: string\n}\n\nexport async function getRootCause(client: HttpClient, input: RootCauseInput): Promise<ToolResponse> {\n  const qs = input.errorId ? `?errorId=${encodeURIComponent(input.errorId)}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/root-cause/${encodeURIComponent(input.errorNode)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<RootCauseResult>(path)\n    const arrowPath = result.traversalPath.join(' ← ')\n    const provenances = result.edgeProvenances.length\n      ? result.edgeProvenances.join(', ')\n      : '(direct, no edges traversed)'\n    const summary =\n      `Root cause for ${input.errorNode} is ${result.rootCauseNode}. ` +\n      result.rootCauseReason +\n      (result.fixRecommendation ? ` Recommended fix: ${result.fixRecommendation}.` : '')\n    const blockLines = [\n      `Traversal path: ${arrowPath}`,\n      `Edge provenances: ${provenances}`,\n    ]\n    if (result.fixRecommendation) {\n      blockLines.push(`Recommended fix: ${result.fixRecommendation}`)\n    }\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: result.confidence,\n      provenance: result.edgeProvenances.length ? result.edgeProvenances : undefined,\n    })\n  }, `No root cause found for ${input.errorNode}. The node may be healthy, or it may not exist in the graph.`)\n}\n\nexport interface BlastRadiusInput {\n  nodeId: string\n  depth?: number\n  project?: string\n}\n\nexport async function getBlastRadius(\n  client: HttpClient,\n  input: BlastRadiusInput,\n): Promise<ToolResponse> {\n  const qs = input.depth !== undefined ? `?depth=${input.depth}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/blast-radius/${encodeURIComponent(input.nodeId)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<BlastRadiusResult>(path)\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        `${result.origin} has no downstream dependencies. Nothing else would break if it failed.`,\n      )\n    }\n    const sorted = [...result.affectedNodes].sort(\n      (a, b) => a.distance - b.distance || a.nodeId.localeCompare(b.nodeId),\n    )\n    const blockLines = sorted.map(formatBlastEntry)\n    // Worst-case confidence — the path with the lowest cascaded confidence\n    // is the headline number; agents should treat this as \"what's the\n    // weakest reachability NEAT actually knows about?\"\n    const minConfidence = sorted.reduce(\n      (m, n) => Math.min(m, n.confidence),\n      Number.POSITIVE_INFINITY,\n    )\n    const provenances = [...new Set(sorted.map((n) => n.edgeProvenance))]\n    return formatToolResponse({\n      summary: `Blast radius for ${result.origin}: ${result.totalAffected} affected node${result.totalAffected === 1 ? '' : 's'} reachable downstream.`,\n      block: blockLines.join('\\n'),\n      confidence: Number.isFinite(minConfidence) ? minConfidence : undefined,\n      provenance: provenances.length ? provenances : undefined,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction formatBlastEntry(n: BlastRadiusAffectedNode): string {\n  const tag = n.edgeProvenance === Provenance.STALE ? ' [STALE — last seen too long ago]' : ''\n  return `  • ${n.nodeId} (distance ${n.distance}, ${n.edgeProvenance})${tag}`\n}\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\nexport interface DependenciesInput {\n  nodeId: string\n  // BFS depth. Default 3; max 10. Direct-only consumers pass 1.\n  depth?: number\n  project?: string\n}\n\n// Transitive get_dependencies (issue #144). Calls the core endpoint\n// /graph/dependencies/:nodeId?depth=N which BFS-walks outbound. The output\n// groups results by hop so direct dependencies stand out from transitives —\n// agents asked \"what does X depend on?\" usually want the direct list with\n// transitives as context.\nexport async function getDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  const depth = input.depth ?? 3\n  const path = projectPath(\n    input.project,\n    `/graph/dependencies/${encodeURIComponent(input.nodeId)}?depth=${depth}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<TransitiveDependenciesResult>(path)\n    if (result.total === 0) {\n      return formatEmptyResponse(\n        depth === 1\n          ? `${input.nodeId} has no direct dependencies in the graph.`\n          : `${input.nodeId} has no dependencies (BFS to depth ${depth}).`,\n      )\n    }\n    // Group by distance so the structured block reads as concentric rings.\n    const byDistance = new Map<number, typeof result.dependencies>()\n    for (const dep of result.dependencies) {\n      const ring = byDistance.get(dep.distance) ?? []\n      ring.push(dep)\n      byDistance.set(dep.distance, ring)\n    }\n    const blockLines: string[] = []\n    for (const distance of [...byDistance.keys()].sort((a, b) => a - b)) {\n      const label = distance === 1 ? 'Direct (distance 1)' : `Distance ${distance}`\n      blockLines.push(`${label}:`)\n      for (const dep of byDistance.get(distance)!) {\n        blockLines.push(`  • ${dep.nodeId} — ${dep.edgeType} (${dep.provenance})`)\n      }\n    }\n    const provenances = [...new Set(result.dependencies.map((d) => d.provenance))]\n    const directCount = byDistance.get(1)?.length ?? 0\n    const summary =\n      depth === 1\n        ? `${input.nodeId} has ${directCount} direct dependenc${directCount === 1 ? 'y' : 'ies'}.`\n        : `${input.nodeId} has ${result.total} dependenc${result.total === 1 ? 'y' : 'ies'} reachable to depth ${depth} (${directCount} direct).`\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      provenance: provenances,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport async function getObservedDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const edges = await client.get<EdgesResponse>(\n      projectPath(input.project, `/graph/edges/${encodeURIComponent(input.nodeId)}`),\n    )\n    const observed = edges.outbound.filter((e) => e.provenance === Provenance.OBSERVED)\n    if (observed.length === 0) {\n      const hasExtracted = edges.outbound.some((e) => e.provenance === Provenance.EXTRACTED)\n      const note = hasExtracted\n        ? ' Static (EXTRACTED) dependencies exist but no runtime traffic has been seen — is OTel running?'\n        : ''\n      return formatEmptyResponse(`No OBSERVED dependencies for ${input.nodeId}.${note}`)\n    }\n    const blockLines = observed.map((e) => `  • ${e.target} — ${e.type}${edgeMeta(e)}`)\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${observed.length} runtime dependenc${observed.length === 1 ? 'y' : 'ies'} confirmed by OTel.`,\n      block: blockLines.join('\\n'),\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction edgeMeta(e: GraphEdge): string {\n  const bits: string[] = []\n  if (e.signal) {\n    // Prefer the runtime signal numbers — \"saw 1,247 calls, 3 errors\" reads\n    // better than a derived 0.94 confidence.\n    bits.push(`spans=${e.signal.spanCount}`)\n    if (e.signal.errorCount > 0) bits.push(`errors=${e.signal.errorCount}`)\n    if (e.signal.lastObservedAgeMs !== undefined) {\n      bits.push(`age=${formatDuration(e.signal.lastObservedAgeMs)}`)\n    }\n  } else if (e.callCount !== undefined) {\n    bits.push(`callCount=${e.callCount}`)\n  }\n  if (e.lastObserved) bits.push(`lastObserved=${e.lastObserved}`)\n  if (e.confidence !== undefined) bits.push(`confidence=${e.confidence}`)\n  return bits.length ? ` [${bits.join(', ')}]` : ''\n}\n\nfunction formatDuration(ms: number): string {\n  if (ms < 1000) return `${Math.round(ms)}ms`\n  const s = Math.round(ms / 1000)\n  if (s < 60) return `${s}s`\n  const m = Math.round(s / 60)\n  if (m < 60) return `${m}m`\n  const h = Math.round(m / 60)\n  if (h < 48) return `${h}h`\n  return `${Math.round(h / 24)}d`\n}\n\nexport interface IncidentHistoryInput {\n  nodeId: string\n  limit?: number\n  project?: string\n}\n\nexport async function getIncidentHistory(\n  client: HttpClient,\n  input: IncidentHistoryInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n      projectPath(input.project, `/incidents/${encodeURIComponent(input.nodeId)}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(`No incidents recorded against ${input.nodeId}.`)\n    }\n    // ndjson order is append-time = oldest first. Reverse so the most recent\n    // event leads, then trim to the requested limit.\n    const ordered = [...events].reverse().slice(0, input.limit ?? 20)\n    const blockLines: string[] = []\n    for (const ev of ordered) {\n      blockLines.push(`  ${ev.timestamp} — ${ev.service}: ${ev.errorMessage}`)\n      blockLines.push(`    trace=${ev.traceId} span=${ev.spanId}`)\n    }\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${body.total} recorded incident${body.total === 1 ? '' : 's'}; showing the ${ordered.length} most recent.`,\n      block: blockLines.join('\\n'),\n      // ErrorEvents are observation records, not graph edges — provenance is\n      // OBSERVED by definition (the OTel span happened).\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport interface SemanticSearchInput {\n  query: string\n  project?: string\n}\n\ninterface SearchResponse {\n  query: string\n  provider?: 'ollama' | 'transformers' | 'substring'\n  matches: (GraphNode & { score?: number })[]\n}\n\nexport async function semanticSearch(\n  client: HttpClient,\n  input: SemanticSearchInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<SearchResponse>(\n      projectPath(input.project, `/search?q=${encodeURIComponent(input.query)}`),\n    )\n    if (result.matches.length === 0) {\n      return formatEmptyResponse(`No matches for \"${input.query}\".`)\n    }\n    const provider = result.provider ?? 'substring'\n    const blockLines: string[] = []\n    let topScore: number | undefined\n    for (const n of result.matches) {\n      // Embedding tiers attach a cosine score in [0,1]; substring fallback\n      // doesn't, so we elide the score when it's the placeholder 1.\n      const score = provider !== 'substring' && typeof n.score === 'number' ? n.score : undefined\n      const scoreBit = score !== undefined ? ` [score=${score.toFixed(2)}]` : ''\n      if (score !== undefined && (topScore === undefined || score > topScore)) topScore = score\n      blockLines.push(\n        `  • ${n.id} (${n.type}) — ${(n as { name?: string }).name ?? n.id}${scoreBit}`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Found ${result.matches.length} match${result.matches.length === 1 ? '' : 'es'} for \"${input.query}\" via ${provider} provider.`,\n      block: blockLines.join('\\n'),\n      // Top similarity score doubles as a \"how confident is the embedder\n      // about the best match\" signal. Substring provider returns no score —\n      // the footer shows n/a in that case.\n      confidence: topScore,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface GraphDiffInput {\n  againstSnapshot: string\n  project?: string\n}\n\ninterface GraphDiffResponse {\n  base: { exportedAt?: string }\n  current: { exportedAt: string }\n  added: { nodes: GraphNode[]; edges: GraphEdge[] }\n  removed: { nodes: GraphNode[]; edges: GraphEdge[] }\n  changed: {\n    nodes: { id: string; before: GraphNode; after: GraphNode }[]\n    edges: { id: string; before: GraphEdge; after: GraphEdge }[]\n  }\n}\n\nexport async function getGraphDiff(\n  client: HttpClient,\n  input: GraphDiffInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<GraphDiffResponse>(\n      projectPath(\n        input.project,\n        `/graph/diff?against=${encodeURIComponent(input.againstSnapshot)}`,\n      ),\n    )\n    const total =\n      result.added.nodes.length +\n      result.added.edges.length +\n      result.removed.nodes.length +\n      result.removed.edges.length +\n      result.changed.nodes.length +\n      result.changed.edges.length\n    const baseLabel = result.base.exportedAt ?? 'unknown'\n    if (total === 0) {\n      return formatEmptyResponse(\n        `No differences between the current graph and ${input.againstSnapshot} (base exportedAt=${baseLabel}).`,\n      )\n    }\n    const blockLines: string[] = [\n      `  base exportedAt:    ${baseLabel}`,\n      `  current exportedAt: ${result.current.exportedAt}`,\n      '',\n    ]\n    if (result.added.nodes.length || result.added.edges.length) {\n      blockLines.push('Added:')\n      for (const n of result.added.nodes) blockLines.push(`  + node ${n.id} (${n.type})`)\n      for (const e of result.added.edges)\n        blockLines.push(`  + edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.removed.nodes.length || result.removed.edges.length) {\n      blockLines.push('Removed:')\n      for (const n of result.removed.nodes) blockLines.push(`  - node ${n.id} (${n.type})`)\n      for (const e of result.removed.edges)\n        blockLines.push(`  - edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.changed.nodes.length || result.changed.edges.length) {\n      blockLines.push('Changed:')\n      for (const c of result.changed.nodes) {\n        blockLines.push(`  ~ node ${c.id} — ${summariseAttrDiff(c.before, c.after)}`)\n      }\n      for (const c of result.changed.edges) {\n        const provBit =\n          c.before.provenance !== c.after.provenance\n            ? `provenance ${c.before.provenance} → ${c.after.provenance}`\n            : summariseAttrDiff(c.before, c.after)\n        blockLines.push(`  ~ edge ${c.id} — ${provBit}`)\n      }\n    }\n    return formatToolResponse({\n      summary: `Diff against ${input.againstSnapshot}: ${total} change${total === 1 ? '' : 's'} between the snapshot and the live graph.`,\n      block: blockLines.join('\\n').trimEnd(),\n      // Diff results don't have a per-result provenance — the diff spans\n      // every edge type and provenance kind. Footer shows n/a.\n    })\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 400) {\n      return formatErrorResponse(\n        `Could not load snapshot ${input.againstSnapshot}: ${err.message}`,\n      )\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nfunction summariseAttrDiff(\n  before: Record<string, unknown>,\n  after: Record<string, unknown>,\n): string {\n  const keys = new Set([...Object.keys(before), ...Object.keys(after)])\n  const changed: string[] = []\n  for (const k of keys) {\n    if (JSON.stringify(before[k]) !== JSON.stringify(after[k])) changed.push(k)\n  }\n  return changed.length === 0\n    ? 'attributes differ'\n    : `fields changed: ${changed.sort().join(', ')}`\n}\n\nexport interface RecentStaleEdgesInput {\n  limit?: number\n  edgeType?: string\n  project?: string\n}\n\ninterface StaleEventResponse {\n  edgeId: string\n  source: string\n  target: string\n  edgeType: string\n  thresholdMs: number\n  ageMs: number\n  lastObserved: string\n  transitionedAt: string\n}\n\nexport async function getRecentStaleEdges(\n  client: HttpClient,\n  input: RecentStaleEdgesInput,\n): Promise<ToolResponse> {\n  const params = new URLSearchParams()\n  if (input.limit !== undefined) params.set('limit', String(input.limit))\n  if (input.edgeType) params.set('edgeType', input.edgeType)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n\n  try {\n    const body = await client.get<{ count: number; total: number; events: StaleEventResponse[] }>(\n      projectPath(input.project, `/stale-events${qs}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(\n        input.edgeType\n          ? `No stale ${input.edgeType} edges recorded.`\n          : 'No stale-edge transitions recorded yet.',\n      )\n    }\n    const blockLines = events.map(\n      (e) =>\n        `  ${e.transitionedAt} — ${e.source} -[${e.edgeType}]-> ${e.target}` +\n        ` (last seen ${e.lastObserved}, threshold ${formatDuration(e.thresholdMs)})`,\n    )\n    return formatToolResponse({\n      summary: `${events.length} stale-edge transition${events.length === 1 ? '' : 's'} recorded${input.edgeType ? ` for ${input.edgeType}` : ''}.`,\n      block: blockLines.join('\\n'),\n      // STALE by definition — every event is a transition into STALE.\n      provenance: Provenance.STALE,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface CheckPoliciesInput {\n  // 'all' (default) returns every current violation. 'unresolved' is reserved\n  // for future resolution tracking — for the MVP it behaves the same as 'all'.\n  // { policyId } narrows to violations of one named policy.\n  scope?: 'all' | 'unresolved' | { policyId: string }\n  // When provided, dry-run evaluation: return violations that *would* result\n  // if the action were applied. Without it, return current violations.\n  hypotheticalAction?: HypotheticalAction\n  project?: string\n}\n\ninterface PoliciesCheckResponse {\n  allowed: boolean\n  hypotheticalAction?: HypotheticalAction\n  violations: PolicyViolation[]\n}\n\n// check_policies — single MCP tool covering both state-read and dry-run modes\n// per ADR-045. The contract explicitly rejects the audit's two-tool split\n// (evaluate_policy + get_policy_violations); both modes route through here.\nexport async function checkPolicies(\n  client: HttpClient,\n  input: CheckPoliciesInput,\n): Promise<ToolResponse> {\n  try {\n    let violations: PolicyViolation[]\n    let allowed = true\n    let hypothetical: HypotheticalAction | undefined\n\n    if (input.hypotheticalAction) {\n      // Dry-run via POST /policies/check.\n      const body = await postJson<PoliciesCheckResponse>(\n        client,\n        projectPath(input.project, '/policies/check'),\n        { hypotheticalAction: input.hypotheticalAction },\n      )\n      violations = body.violations\n      allowed = body.allowed\n      hypothetical = body.hypotheticalAction\n    } else {\n      // State read via GET /policies/violations. Optional scope filters via\n      // ?policyId=, severity isn't surfaced in the tool input today.\n      const qsParams = new URLSearchParams()\n      if (typeof input.scope === 'object' && 'policyId' in input.scope) {\n        qsParams.set('policyId', input.scope.policyId)\n      }\n      const qs = qsParams.size > 0 ? `?${qsParams.toString()}` : ''\n      const body = await client.get<{ violations: PolicyViolation[] }>(\n        projectPath(input.project, `/policies/violations${qs}`),\n      )\n      violations = body.violations\n      allowed = violations.every((v) => v.onViolation !== 'block')\n    }\n\n    if (violations.length === 0) {\n      return formatEmptyResponse(\n        hypothetical\n          ? `No violations would result from the hypothetical action (${hypothetical.kind}).`\n          : 'No policy violations recorded.',\n      )\n    }\n\n    const blockCount = violations.filter((v) => v.onViolation === 'block').length\n    const summaryParts: string[] = []\n    if (hypothetical) {\n      summaryParts.push(\n        `Hypothetical ${hypothetical.kind} would surface ${violations.length} violation${violations.length === 1 ? '' : 's'}`,\n      )\n    } else {\n      summaryParts.push(\n        `${violations.length} policy violation${violations.length === 1 ? '' : 's'} currently recorded`,\n      )\n    }\n    if (blockCount > 0) {\n      summaryParts.push(`${blockCount} of which block`)\n    }\n    if (!allowed && hypothetical) {\n      summaryParts.push('action denied')\n    }\n    const summary = summaryParts.join('; ') + '.'\n\n    const blockLines = violations.map((v) => {\n      const subject = v.subject.nodeId ?? v.subject.edgeId ?? v.subject.path?.[0] ?? '(global)'\n      return `  • [${v.severity}/${v.onViolation}] ${v.policyName}: ${v.message} — ${subject}`\n    })\n    const severities = [...new Set(violations.map((v) => v.severity))]\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      // Confidence: hypothetical results inherit a 0.7 cap (the engine\n      // can't fully simulate every action shape in MVP); confirmed\n      // violations report 1.00 since the engine ran against current state.\n      confidence: hypothetical ? 0.7 : 1,\n      provenance: severities.join(' '),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\n// ──────────────────────────────────────────────────────────────────────────\n// get_divergences (ADR-060) — the thesis surface\n// ──────────────────────────────────────────────────────────────────────────\n\nexport interface DivergencesInput {\n  type?: ReadonlyArray<DivergenceType>\n  minConfidence?: number\n  node?: string\n  project?: string\n}\n\nfunction buildDivergencesPath(input: DivergencesInput): string {\n  const params = new URLSearchParams()\n  if (input.type && input.type.length > 0) params.set('type', input.type.join(','))\n  if (input.minConfidence !== undefined) {\n    params.set('minConfidence', String(input.minConfidence))\n  }\n  if (input.node) params.set('node', input.node)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n  return projectPath(input.project, `/graph/divergences${qs}`)\n}\n\nfunction formatDivergenceLine(d: Divergence): string {\n  switch (d.type) {\n    case 'missing-observed':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'missing-extracted':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'version-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared ${d.extractedVersion}, observed engine ${d.observedVersion} (${d.compatibility})`\n    case 'host-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared host ${d.extractedHost}, observed host ${d.observedHost}`\n    case 'compat-violation':\n      return `  • [${d.type}] ${d.source} → ${d.target} — ${d.rule.kind}${d.rule.package ? ` (${d.rule.package})` : ''}`\n  }\n}\n\nexport async function getDivergences(\n  client: HttpClient,\n  input: DivergencesInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<DivergenceResult>(buildDivergencesPath(input))\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        'No divergences found between the declared (EXTRACTED) and observed (OBSERVED) views of the graph.',\n      )\n    }\n    // Sorted by confidence descending already; first entry is the headline.\n    const headline = result.divergences[0]!\n    const summary =\n      `Found ${result.totalAffected} divergence${result.totalAffected === 1 ? '' : 's'} between code and production. ` +\n      `Highest-confidence: ${headline.type} on ${headline.source} → ${headline.target}. ${headline.reason}`\n    const blockLines: string[] = []\n    for (const d of result.divergences) {\n      blockLines.push(formatDivergenceLine(d))\n      blockLines.push(`    reason: ${d.reason}`)\n      blockLines.push(`    recommendation: ${d.recommendation}`)\n    }\n    const maxConfidence = result.divergences.reduce(\n      (m, d) => Math.max(m, d.confidence),\n      0,\n    )\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: maxConfidence,\n      // Composite provenance — divergences sit between EXTRACTED and\n      // OBSERVED by construction; that's what makes them divergences.\n      provenance: 'composite (EXTRACTED + OBSERVED)',\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nasync function postJson<T>(\n  client: HttpClient,\n  path: string,\n  body: unknown,\n): Promise<T> {\n  // The base HttpClient interface only exposes get(). For POST we need to\n  // reach into the underlying transport. Most callers pass the client built\n  // by createHttpClient which has post; types are kept minimal so test\n  // stubs don't have to implement post unless the tool needs it.\n  const c = client as HttpClient & { post?: <U>(p: string, b: unknown) => Promise<U> }\n  if (typeof c.post !== 'function') {\n    throw new Error('HttpClient does not support POST — required for check_policies dry-run')\n  }\n  return c.post<T>(path, body)\n}\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nexport interface ListUninstrumentedInput {\n  project?: string\n}\n\ninterface LibraryCoverageResult {\n  library: string\n  coverage: string\n  installedVersion?: string\n  instrumentation_package?: string\n  package_version?: string\n  registration?: string\n  notes?: string\n}\n\nexport async function neatListUninstrumented(\n  client: HttpClient,\n  input: ListUninstrumentedInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<{ libraries: LibraryCoverageResult[] }>(\n      projectPath(input.project, '/extend/list-uninstrumented'),\n    )\n    const libs = result.libraries\n    if (libs.length === 0) {\n      return formatEmptyResponse(\n        'All detected libraries are covered by the auto-instrumentations bundle or the HTTP fallback. No extension needed.',\n      )\n    }\n    const blockLines = libs.map((l) => {\n      const pkgBit = l.instrumentation_package ? ` → ${l.instrumentation_package}@${l.package_version ?? '*'}` : ' → no registry entry'\n      return `  • ${l.library} [${l.coverage}]${pkgBit}${l.notes ? ` — ${l.notes}` : ''}`\n    })\n    return formatToolResponse({\n      summary: `${libs.length} librar${libs.length === 1 ? 'y needs' : 'ies need'} instrumentation beyond the auto-instrumentations bundle.`,\n      block: blockLines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface LookupInstrumentationInput {\n  library: string\n  installedVersion?: string\n  project?: string\n}\n\nexport async function neatLookupInstrumentation(\n  client: HttpClient,\n  input: LookupInstrumentationInput,\n): Promise<ToolResponse> {\n  const qs = input.installedVersion ? `?library=${encodeURIComponent(input.library)}&version=${encodeURIComponent(input.installedVersion)}` : `?library=${encodeURIComponent(input.library)}`\n  try {\n    const result = await client.get<LibraryCoverageResult>(\n      projectPath(input.project, `/extend/lookup${qs}`),\n    )\n    const lines = [\n      `  coverage: ${result.coverage}`,\n      ...(result.instrumentation_package ? [`  instrumentation_package: ${result.instrumentation_package}@${result.package_version ?? '*'}`] : []),\n      ...(result.registration ? [`  registration: ${result.registration}`] : []),\n      ...(result.notes ? 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'' : 's'} would be touched. No changes made.`,\n      block: lines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RollbackExtensionInput {\n  library: string\n  project?: string\n}\n\nexport async function neatRollbackExtension(\n  client: HttpClient,\n  input: RollbackExtensionInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await postJson<{ undone: boolean; message: string }>(\n      client,\n      projectPath(input.project, '/extend/rollback'),\n      { library: input.library },\n    )\n    if (!result.undone) {\n      return formatEmptyResponse(\n        `No prior apply found for ${input.library} — nothing to roll back.`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Rolled back instrumentation for ${input.library}. ${result.message}. Run your package manager install to sync the lockfile.`,\n      block: `  result: ${result.message}`,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n","// Standardized three-part response format for every MCP tool (ADR-039,\n// issue #143). Output shape:\n//\n//   {summary — NL paragraph: what was found, why it matters}\n//\n//   {block — typed payload, formatted}\n//\n//   confidence: 0.94 · provenance: OBSERVED\n//\n// Empty result → footer reads \"confidence: n/a · provenance: n/a\". Every tool\n// in packages/mcp/src/tools.ts routes through this helper so consumers get a\n// consistent shape — agents can pattern-match on the footer to know how much\n// to trust the answer.\n\nexport interface ToolResponse {\n  [x: string]: unknown\n  content: { type: 'text'; text: string }[]\n  isError?: boolean\n}\n\nexport interface FormatToolResponseInput {\n  // NL paragraph. One or two sentences. What was found and why it matters.\n  summary: string\n  // Structured block. The formatted typed payload — usually a bullet list,\n  // sometimes a multi-section breakdown. May be empty when the summary\n  // already conveys everything.\n  block?: string\n  // Per-result confidence in [0, 1]. Undefined → footer reads \"n/a\".\n  confidence?: number\n  // Per-result provenance. Single value, or an array if the result spans\n  // mixed provenances (e.g. a path of OBSERVED + EXTRACTED edges). Undefined\n  // → footer reads \"n/a\".\n  provenance?: string | string[]\n  // Set on transport / 5xx errors. Routes through ToolResponse.isError so\n  // MCP clients can surface a non-\"normal\" return.\n  isError?: boolean\n}\n\nfunction formatFooter(\n  confidence: number | undefined,\n  provenance: string | string[] | undefined,\n): string {\n  const c = confidence === undefined ? 'n/a' : confidence.toFixed(2)\n  const p =\n    provenance === undefined\n      ? 'n/a'\n      : Array.isArray(provenance)\n        ? [...new Set(provenance)].join(', ')\n        : provenance\n  return `confidence: ${c} · provenance: ${p}`\n}\n\nexport function formatToolResponse(input: FormatToolResponseInput): ToolResponse {\n  const sections: string[] = [input.summary.trim()]\n  if (input.block && input.block.trim().length > 0) {\n    sections.push(input.block.trimEnd())\n  }\n  sections.push(formatFooter(input.confidence, input.provenance))\n  const text = sections.join('\\n\\n')\n  return {\n    content: [{ type: 'text', text }],\n    ...(input.isError ? { isError: true } : {}),\n  }\n}\n\n// Convenience for the \"node not found / empty graph\" path. 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package/dist/index.js

@@ -10,6 +10,47 @@ import {
   HypotheticalActionSchema
 } from "@neat.is/types";
 
+// src/base-url.ts
+import { readFileSync } from "fs";
+import { dirname, join } from "path";
+var DEFAULT_BASE_URL = "http://localhost:8080";
+function resolveFromDaemonRecord(cwd) {
+  let dir = cwd;
+  for (; ; ) {
+    const url = readDaemonRecord(join(dir, "neat-out", "daemon.json"));
+    if (url !== void 0) return url;
+    const parent = dirname(dir);
+    if (parent === dir) return void 0;
+    dir = parent;
+  }
+}
+function readDaemonRecord(path) {
+  let raw;
+  try {
+    raw = readFileSync(path, "utf8");
+  } catch {
+    return void 0;
+  }
+  let record;
+  try {
+    record = JSON.parse(raw);
+  } catch {
+    return void 0;
+  }
+  if (record == null || typeof record !== "object") return void 0;
+  if (record.status === "stopped") return void 0;
+  const rest = record.ports?.rest;
+  if (typeof rest !== "number" || !Number.isInteger(rest) || rest <= 0 || rest > 65535) {
+    return void 0;
+  }
+  return `http://localhost:${rest}`;
+}
+function resolveBaseUrl(env = process.env, cwd = process.cwd()) {
+  const override = env.NEAT_CORE_URL ?? env.NEAT_API_URL;
+  if (override) return override;
+  return resolveFromDaemonRecord(cwd) ?? DEFAULT_BASE_URL;
+}
+
 // src/client.ts
 function createHttpClient(baseUrl2, bearerToken) {
   const root = baseUrl2.replace(/\/$/, "");
@@ -868,7 +909,7 @@ async function neatRollbackExtension(client2, input) {
 }
 
 // src/index.ts
-var baseUrl = process.env.NEAT_CORE_URL ?? "http://localhost:8080";
+var baseUrl = resolveBaseUrl();
 var authToken = process.env.NEAT_AUTH_TOKEN;
 var client = createHttpClient(baseUrl, authToken && authToken.length > 0 ? authToken : void 0);
 var defaultProject = process.env.NEAT_DEFAULT_PROJECT;

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/index.ts","../src/client.ts","../src/resources.ts","../src/tools.ts","../src/format.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { McpServer, type ToolCallback } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js'\nimport { z } from 'zod'\nimport {\n  CheckPoliciesScopeSchema,\n  DivergenceTypeSchema,\n  HypotheticalActionSchema,\n  type MCPToolName,\n} from '@neat.is/types'\nimport { createHttpClient } from './client.js'\nimport { registerResources } from './resources.js'\nimport {\n  checkPolicies,\n  getBlastRadius,\n  getDependencies,\n  getDivergences,\n  getGraphDiff,\n  getIncidentHistory,\n  getObservedDependencies,\n  getRecentStaleEdges,\n  getRootCause,\n  neatApplyExtension,\n  neatDescribeProjectInstrumentation,\n  neatDryRunExtension,\n  neatListUninstrumented,\n  neatLookupInstrumentation,\n  neatRollbackExtension,\n  semanticSearch,\n} from './tools.js'\n\nconst baseUrl = process.env.NEAT_CORE_URL ?? 'http://localhost:8080'\n// ADR-073 §3 — carry the operator's bearer to a secured core. Sourced from\n// NEAT_AUTH_TOKEN, the same env the daemon enforces against; empty/unset\n// keeps the header off so a loopback dev core stays reachable.\nconst authToken = process.env.NEAT_AUTH_TOKEN\nconst client = createHttpClient(baseUrl, authToken && authToken.length > 0 ? authToken : undefined)\n\n// `NEAT_DEFAULT_PROJECT` is the implicit project for tool calls that don't\n// pass a `project` arg. Unset means \"use the core's `default` project\" — we\n// route those calls through the legacy unprefixed URL so an older core (one\n// that predates #83) still gets the request it expects.\nconst defaultProject = process.env.NEAT_DEFAULT_PROJECT\nconst projectFor = (input: { project?: string }): string | undefined =>\n  input.project ?? defaultProject\n\nconst projectField = z\n  .string()\n  .optional()\n  .describe(\n    'Project name when the core hosts more than one (set NEAT_PROJECTS=...). Omit to use the default project.',\n  )\n\nconst server = new McpServer({\n  name: 'neat',\n  version: '0.1.0',\n})\n\n// Register every MCP tool through this wrapper, not server.tool directly.\n// The tool name is constrained to MCP_TOOL_NAMES in @neat.is/types — add the\n// name there first or this won't compile. The contracts audit also checks\n// that registrations and the manifest match both ways, so the tool surface\n// can't drift from the contract again.\nconst registerTool = <Args extends z.ZodRawShape>(\n  name: MCPToolName,\n  description: string,\n  paramsSchema: Args,\n  cb: ToolCallback<Args>,\n): ReturnType<typeof server.tool> => server.tool(name, description, paramsSchema, cb)\n\nregisterTool(\n  'get_root_cause',\n  'Trace a failing node up its dependency graph to find the underlying cause. Use this when something is breaking and you want to know which upstream component is the actual culprit.',\n  {\n    errorNode: z\n      .string()\n      .describe('Graph node id where the error surfaced, e.g. \"database:payments-db\"'),\n    errorId: z\n      .string()\n      .optional()\n      .describe('Specific error event id from incident history; if set, the result is coloured with that error message'),\n    project: projectField,\n  },\n  async (input) => getRootCause(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_blast_radius',\n  'List every node downstream of the given node — what would break if this node failed or was redeployed.',\n  {\n    nodeId: z.string().describe('Graph node id to compute blast radius from'),\n    depth: z\n      .number()\n      .int()\n      .nonnegative()\n      .max(20)\n      .optional()\n      .describe('Max BFS depth (default 10)'),\n    project: projectField,\n  },\n  async (input) => getBlastRadius(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_dependencies',\n  'List the transitive outgoing dependencies of a node, BFS to depth N (default 3, max 10). Each result carries distance, edge type, and provenance — both static (EXTRACTED) and runtime (OBSERVED). Pass depth=1 for direct-only.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    depth: z\n      .number()\n      .int()\n      .min(1)\n      .max(10)\n      .optional()\n      .describe('BFS depth (default 3, max 10). depth=1 returns direct dependencies only.'),\n    project: projectField,\n  },\n  async (input) => getDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_observed_dependencies',\n  'List only the runtime (OBSERVED via OTel) outgoing dependencies of a node. Use this to compare what code SAYS the service depends on vs what production actually does.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    project: projectField,\n  },\n  async (input) => getObservedDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_incident_history',\n  'Return recent OTel error events recorded against a node, most recent first.',\n  {\n    nodeId: z.string().describe('Graph node id to query'),\n    limit: z.number().int().positive().max(100).optional().describe('Max events to return (default 20)'),\n    project: projectField,\n  },\n  async (input) => getIncidentHistory(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'semantic_search',\n  'Search nodes by natural-language query. Uses embedding vectors when an embedder is available (Ollama nomic-embed-text → in-process MiniLM → substring fallback) — phrase the query the way you would describe what you want.',\n  {\n    query: z.string().describe('Free-text query, e.g. \"service handling checkout payments\"'),\n    project: projectField,\n  },\n  async (input) => semanticSearch(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_graph_diff',\n  'Diff a saved graph snapshot against the current live graph. Useful for change reviews and post-incidents — answers \"what changed in the architecture between then and now.\" Returns added/removed/changed nodes and edges with both snapshot timestamps.',\n  {\n    againstSnapshot: z\n      .string()\n      .describe(\n        'Path or http(s) URL of the snapshot to diff against (the \"before\" state). The current graph is the \"after\".',\n      ),\n    project: projectField,\n  },\n  async (input) => getGraphDiff(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_recent_stale_edges',\n  'List the most recent OBSERVED → STALE edge transitions. Use this to spot integrations that have gone quiet — a CALLS edge that just went stale typically means an upstream stopped calling, not that the link is healthy.',\n  {\n    limit: z\n      .number()\n      .int()\n      .positive()\n      .max(200)\n      .optional()\n      .describe('Max events to return (default 50)'),\n    edgeType: z\n      .string()\n      .optional()\n      .describe('Filter by edge type — e.g. \"CALLS\" or \"CONNECTS_TO\"'),\n    project: projectField,\n  },\n  async (input) => getRecentStaleEdges(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_divergences',\n  \"Returns places where what the code declares (EXTRACTED) doesn't match what production observed (OBSERVED). The single most NEAT-shaped query — the one that justifies the whole graph. Use when the user asks 'is anything weird?' or 'what does production do that the code doesn't?' or 'find me a bug' on an unfamiliar codebase. Returns divergences ranked by confidence × severity. Prefer this over `get_root_cause` when no specific node is failing.\",\n  {\n    type: z\n      .array(DivergenceTypeSchema)\n      .optional()\n      .describe(\n        'Filter by divergence type. One or more of: missing-observed, missing-extracted, version-mismatch, host-mismatch, compat-violation. Omit for all.',\n      ),\n    minConfidence: z\n      .number()\n      .min(0)\n      .max(1)\n      .optional()\n      .describe('Drop divergences below this confidence threshold (0.0 - 1.0).'),\n    node: z\n      .string()\n      .optional()\n      .describe('Scope to divergences involving this node id (as source or target).'),\n    project: projectField,\n  },\n  async (input) =>\n    getDivergences(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'check_policies',\n  'Inspect or dry-run the project\\'s policy.json. Without hypotheticalAction, returns currently-recorded violations. With hypotheticalAction, returns violations that would result if the action were applied. Architectural assertions in five shapes (structural / compatibility / provenance / ownership / blast-radius).',\n  {\n    scope: CheckPoliciesScopeSchema.optional().describe(\n      'Narrow to a subset. Default \"all\".',\n    ),\n    hypotheticalAction: HypotheticalActionSchema.optional().describe(\n      'Dry-run mode: simulate the action and return resulting violations. Omit for current state.',\n    ),\n    project: projectField,\n  },\n  async (input) =>\n    checkPolicies(client, {\n      ...input,\n      project: projectFor(input),\n    } as Parameters<typeof checkPolicies>[1]),\n)\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nregisterTool(\n  'neat_list_uninstrumented',\n  'List libraries in the project that need instrumentation beyond the auto-instrumentations bundle. Returns first-party, third-party, and gap libraries that require an explicit instrumentation package.',\n  { project: projectField },\n  async (input) => neatListUninstrumented(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_lookup_instrumentation',\n  'Look up the registry entry for a specific library. Returns the canonical instrumentation package, version, and registration snippet if one exists.',\n  {\n    library: z.string().describe('npm package name, e.g. \"@prisma/client\"'),\n    installedVersion: z.string().optional().describe('Installed version for range matching'),\n    project: projectField,\n  },\n  async (input) => neatLookupInstrumentation(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_describe_project_instrumentation',\n  'Describe the current state of OTel instrumentation in the project: which hook files exist, whether .env.neat is present, which OTel deps are installed.',\n  { project: projectField },\n  async (input) => neatDescribeProjectInstrumentation(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_apply_extension',\n  'Install an instrumentation package and splice its registration into the existing OTel hook file. Idempotent — calling twice with the same args is a no-op. Only modifies instrumentation files, package.json, and the lockfile (via the project package manager).',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array, e.g. \"instrumentations.push(new PrismaInstrumentation())\"'),\n    project: projectField,\n  },\n  async (input) => neatApplyExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_dry_run_extension',\n  'Preview what neat_apply_extension would do without making any changes. Returns the exact file diff, deps to add, and install command.',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array'),\n    project: projectField,\n  },\n  async (input) => neatDryRunExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_rollback_extension',\n  'Undo the last neat_apply_extension for a given library. Removes the dep from package.json and the registration from the hook file. Does not re-run the package manager — run install manually to sync the lockfile.',\n  {\n    library: z.string().describe('The library whose instrumentation should be rolled back'),\n    project: projectField,\n  },\n  async (input) => neatRollbackExtension(client, { ...input, project: projectFor(input) }),\n)\n\n// Resources sit alongside tools — same data, different access pattern. Read\n// the per-node resource for raw attrs+edges JSON; subscribe to the incidents\n// resource to be notified when new errors land. The tools above are unchanged.\nconst incidentsPollMs = process.env.NEAT_RESOURCE_POLL_MS\n  ? Number(process.env.NEAT_RESOURCE_POLL_MS)\n  : undefined\nconst resourceRegistration = registerResources(server, client, {\n  ...(incidentsPollMs !== undefined ? { incidentsPollMs } : {}),\n  ...(defaultProject ? { project: defaultProject } : {}),\n})\n\nasync function main(): Promise<void> {\n  const transport = new StdioServerTransport()\n  await server.connect(transport)\n}\n\nconst stopPolling = (): void => {\n  resourceRegistration.stop()\n}\nprocess.on('SIGTERM', stopPolling)\nprocess.on('SIGINT', stopPolling)\n\nmain().catch((err) => {\n  console.error(err)\n  process.exit(1)\n})\n","// Thin HTTP client for the neat-core REST surface. Tools call out via this\n// instead of fetch() directly so tests can swap in a stub implementation\n// without monkey-patching globals.\n\nexport interface HttpClient {\n  get<T>(path: string): Promise<T>\n  // POST is optional on the interface so test stubs that only need GET don't\n  // have to implement it. Production createHttpClient always provides it.\n  post?<T>(path: string, body: unknown): Promise<T>\n}\n\n// ADR-073 §3 — the MCP server is a first-party read client, so it carries the\n// operator's bearer on every call the same way the CLI does. `bearerToken`\n// comes from `NEAT_AUTH_TOKEN` (sourced once in index.ts). Empty / undefined\n// keeps the header off, so an unauthenticated loopback dev daemon still works.\nexport function createHttpClient(baseUrl: string, bearerToken?: string): HttpClient {\n  const root = baseUrl.replace(/\\/$/, '')\n  const authHeader =\n    bearerToken && bearerToken.length > 0\n      ? { authorization: `Bearer ${bearerToken}` }\n      : {}\n  return {\n    async get<T>(path: string): Promise<T> {\n      const res = await fetch(`${root}${path}`, { headers: { ...authHeader } })\n      if (!res.ok) {\n        const body = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on GET ${path}: ${body}`)\n      }\n      return (await res.json()) as T\n    },\n    async post<T>(path: string, body: unknown): Promise<T> {\n      const res = await fetch(`${root}${path}`, {\n        method: 'POST',\n        headers: { 'content-type': 'application/json', ...authHeader },\n        body: JSON.stringify(body),\n      })\n      if (!res.ok) {\n        const text = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on POST ${path}: ${text}`)\n      }\n      return (await res.json()) as T\n    },\n  }\n}\n\nexport class HttpError extends Error {\n  constructor(\n    public readonly status: number,\n    message: string,\n  ) {\n    super(message)\n    this.name = 'HttpError'\n  }\n}\n","// MCP Resources — additive surface alongside the eight tools. Two resources:\n//\n//   neat://node/<id>          — one resource per graph node. Read returns the\n//                                node attributes plus its outbound edges.\n//   neat://incidents/recent   — most recent error events. Pollable by the SDK\n//                                via subscribe; we send `notifications/resources/\n//                                updated` when /incidents grows.\n//\n// Pure read helpers are exported so tests can exercise them without spinning up\n// an MCP transport. `registerResources()` does the SDK wiring + the poll loop.\n\nimport type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport {\n  ResourceTemplate,\n} from '@modelcontextprotocol/sdk/server/mcp.js'\nimport type {\n  ListResourcesResult,\n  ReadResourceResult,\n} from '@modelcontextprotocol/sdk/types.js'\nimport type { ErrorEvent, GraphEdge, GraphNode, PolicyViolation } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\ninterface SerializedGraph {\n  nodes: GraphNode[]\n  edges: GraphEdge[]\n}\n\nconst NODE_RESOURCE_MIME = 'application/json'\nconst INCIDENTS_URI = 'neat://incidents/recent'\nconst INCIDENTS_DEFAULT_LIMIT = 50\nconst POLICY_VIOLATIONS_URI = 'neat://policies/violations'\nconst POLICY_VIOLATIONS_DEFAULT_LIMIT = 100\n\nfunction nodeUri(id: string): string {\n  // Node ids contain `:` which RFC 6570 percent-encodes; doing it explicitly\n  // here keeps the URI we hand the SDK identical to what `list` produces.\n  return `neat://node/${encodeURIComponent(id)}`\n}\n\n// Project-aware URL prefix for the underlying core. When unset, hit the\n// legacy unprefixed routes (which the core resolves to project=`default`).\nfunction corePrefix(project: string | undefined): string {\n  return project ? `/projects/${encodeURIComponent(project)}` : ''\n}\n\nfunction nameFromAttrs(attrs: GraphNode): string {\n  return (attrs as { name?: string }).name ?? attrs.id\n}\n\nexport async function listNodeResources(\n  client: HttpClient,\n  project?: string,\n): Promise<ListResourcesResult> {\n  const graph = await client.get<SerializedGraph>(`${corePrefix(project)}/graph`)\n  return {\n    resources: graph.nodes.map((n) => ({\n      uri: nodeUri(n.id),\n      name: nameFromAttrs(n),\n      description: `${n.type} — ${nameFromAttrs(n)}`,\n      mimeType: NODE_RESOURCE_MIME,\n    })),\n  }\n}\n\nexport async function readNodeResource(\n  client: HttpClient,\n  id: string,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const uri = nodeUri(id)\n  const prefix = corePrefix(project)\n  try {\n    const [nodeBody, edges] = await Promise.all([\n      client.get<{ node: GraphNode }>(`${prefix}/graph/node/${encodeURIComponent(id)}`),\n      client.get<EdgesResponse>(`${prefix}/graph/edges/${encodeURIComponent(id)}`),\n    ])\n    const body = {\n      node: nodeBody.node,\n      // Outbound only — the issue spec says \"attrs + outbound edges\". Inbound\n      // edges are still reachable via the other endpoint and would double the\n      // payload for hub nodes (e.g. a shared database).\n      outboundEdges: edges.outbound,\n    }\n    return {\n      contents: [\n        {\n          uri,\n          mimeType: NODE_RESOURCE_MIME,\n          text: JSON.stringify(body, null, 2),\n        },\n      ],\n    }\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return {\n        contents: [\n          {\n            uri,\n            mimeType: NODE_RESOURCE_MIME,\n            text: JSON.stringify({ error: 'node not found', id }),\n          },\n        ],\n      }\n    }\n    throw err\n  }\n}\n\nexport async function readPolicyViolationsResource(\n  client: HttpClient,\n  limit: number = POLICY_VIOLATIONS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ violations: PolicyViolation[] }>(\n    `${corePrefix(project)}/policies/violations`,\n  )\n  const violations = body.violations\n  // Latest first; cap at limit so an exploding violations log doesn't blow\n  // up the resource read. The full file is still on disk for forensic use.\n  const ordered = [...violations].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: POLICY_VIOLATIONS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: violations.length, violations: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\nexport async function readRecentIncidentsResource(\n  client: HttpClient,\n  limit: number = INCIDENTS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n    `${corePrefix(project)}/incidents`,\n  )\n  const events = body.events\n  // ndjson order is append-time = oldest first. Reverse so most-recent leads.\n  const ordered = [...events].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: INCIDENTS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: events.length, events: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\n// Pure helper so the poll loop can be tested without timers. Returns true when\n// the visible state of /incidents has changed in a way subscribers should hear\n// about. Compares total count + the id of the newest event — either is enough\n// on its own, but the pair makes deletes (if they ever happen) survive a\n// missed update.\nexport function incidentsChanged(\n  prev: { total: number; lastId?: string } | null,\n  next: { total: number; lastId?: string },\n): boolean {\n  if (!prev) return false // first observation seeds, doesn't notify\n  if (prev.total !== next.total) return true\n  if (prev.lastId !== next.lastId) return true\n  return false\n}\n\nexport interface RegisterResourcesOptions {\n  // Poll interval for /incidents in ms. 5s by default; 0 disables polling.\n  incidentsPollMs?: number\n  // Project this MCP instance reports against. Unset → core's `default`\n  // project via the legacy unprefixed URLs.\n  project?: string\n}\n\nexport interface ResourceRegistration {\n  // Stops the poll loop. The SDK keeps the registered resources around as\n  // long as the server is alive — calling stop() doesn't unregister them.\n  stop: () => void\n}\n\nexport function registerResources(\n  server: McpServer,\n  client: HttpClient,\n  options: RegisterResourcesOptions = {},\n): ResourceRegistration {\n  const pollMs = options.incidentsPollMs ?? 5000\n  const project = options.project\n\n  // neat://node/<id> — templated. The list callback enumerates current nodes;\n  // the read callback resolves a specific id.\n  server.registerResource(\n    'graph-node',\n    new ResourceTemplate('neat://node/{id}', {\n      list: async () => listNodeResources(client, project),\n    }),\n    {\n      description:\n        'A single graph node by id. Reading returns the node attributes plus its outbound edges as JSON.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async (_uri, variables) => {\n      const raw = variables.id\n      const id = Array.isArray(raw) ? raw[0] : raw\n      if (typeof id !== 'string' || id.length === 0) {\n        throw new Error('neat://node/{id} requires an id')\n      }\n      const decoded = id.includes('%') ? decodeURIComponent(id) : id\n      return readNodeResource(client, decoded, project)\n    },\n  )\n\n  // neat://incidents/recent — static. Subscribers get notifications/resources/\n  // updated on each tick where /incidents has changed.\n  server.registerResource(\n    'incidents-recent',\n    INCIDENTS_URI,\n    {\n      description:\n        'Most recent error events recorded by neat-core, newest first. JSON: { count, total, events[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readRecentIncidentsResource(client, INCIDENTS_DEFAULT_LIMIT, project),\n  )\n\n  // neat://policies/violations — static. Same poll-and-notify pattern as\n  // incidents. Subscribers get resource-updated notifications when the\n  // policy-violations.ndjson grows. ADR-045.\n  server.registerResource(\n    'policies-violations',\n    POLICY_VIOLATIONS_URI,\n    {\n      description:\n        'Current policy violations from policy-violations.ndjson, newest first. JSON: { count, total, violations[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readPolicyViolationsResource(client, POLICY_VIOLATIONS_DEFAULT_LIMIT, project),\n  )\n\n  let stopped = false\n  let timer: NodeJS.Timeout | null = null\n  let lastIncidents: { total: number; lastId?: string } | null = null\n  let lastViolations: { total: number; lastId?: string } | null = null\n\n  const tick = async (): Promise<void> => {\n    if (stopped) return\n    // Incidents poll.\n    try {\n      const incidents = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n        `${corePrefix(project)}/incidents`,\n      )\n      const events = incidents.events\n      const next = {\n        total: incidents.total,\n        lastId: events.length > 0 ? events[events.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastIncidents, next)) {\n        await server.server.sendResourceUpdated({ uri: INCIDENTS_URI }).catch(() => {})\n      }\n      lastIncidents = next\n    } catch {\n      // Core down — keep polling, next tick will catch up.\n    }\n    // Policy-violations poll. Fires the alert action's notifications/\n    // resources/updated for neat://policies/violations subscribers per\n    // ADR-044 §alert. Same change-detection shape as incidents.\n    try {\n      const polBody = await client.get<{ violations: PolicyViolation[] }>(\n        `${corePrefix(project)}/policies/violations`,\n      )\n      const violations = polBody.violations\n      const next = {\n        total: violations.length,\n        lastId:\n          violations.length > 0 ? violations[violations.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastViolations, next)) {\n        await server.server\n          .sendResourceUpdated({ uri: POLICY_VIOLATIONS_URI })\n          .catch(() => {})\n      }\n      lastViolations = next\n    } catch {\n      // Core down or no policies yet — keep polling.\n    }\n  }\n\n  if (pollMs > 0) {\n    // Seed `last` on first tick so we don't fire an \"updated\" notification\n    // when the server first comes up.\n    timer = setInterval(() => {\n      void tick()\n    }, pollMs)\n    if (typeof timer.unref === 'function') timer.unref()\n  }\n\n  return {\n    stop: (): void => {\n      stopped = true\n      if (timer) clearInterval(timer)\n      timer = null\n    },\n  }\n}\n","// Tool implementations. Each one takes an HttpClient + the validated input and\n// returns an MCP CallToolResult routed through formatToolResponse for the\n// three-part shape (NL + structured + footer) per ADR-039 / contract #12.\n// Keeping these as pure functions of (client, input) means tests don't need a\n// running server — just a stub client that returns canned JSON.\n\nimport type {\n  BlastRadiusAffectedNode,\n  BlastRadiusResult,\n  Divergence,\n  DivergenceResult,\n  DivergenceType,\n  ErrorEvent,\n  GraphEdge,\n  GraphNode,\n  HypotheticalAction,\n  PolicyViolation,\n  RootCauseResult,\n  TransitiveDependenciesResult,\n} from '@neat.is/types'\nimport { Provenance } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\nimport {\n  formatEmptyResponse,\n  formatErrorResponse,\n  formatToolResponse,\n  type ToolResponse,\n} from './format.js'\n\nexport type { ToolResponse } from './format.js'\n\n// Project-aware path builder. When `project` is set, route through\n// /projects/<name>/...; otherwise hit the legacy root URL (which the core\n// resolves to project=`default`). Keeping the legacy path means callers\n// running an older core still talk to a known route.\nfunction projectPath(project: string | undefined, suffix: string): string {\n  if (!project) return suffix\n  return `/projects/${encodeURIComponent(project)}${suffix}`\n}\n\n// Most tools want \"node missing → friendly message, anything else → real error\".\nasync function withMissingNodeFallback(\n  fn: () => Promise<ToolResponse>,\n  notFoundMessage: string,\n): Promise<ToolResponse> {\n  try {\n    return await fn()\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return formatEmptyResponse(notFoundMessage)\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RootCauseInput {\n  errorNode: string\n  errorId?: string\n  project?: string\n}\n\nexport async function getRootCause(client: HttpClient, input: RootCauseInput): Promise<ToolResponse> {\n  const qs = input.errorId ? `?errorId=${encodeURIComponent(input.errorId)}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/root-cause/${encodeURIComponent(input.errorNode)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<RootCauseResult>(path)\n    const arrowPath = result.traversalPath.join(' ← ')\n    const provenances = result.edgeProvenances.length\n      ? result.edgeProvenances.join(', ')\n      : '(direct, no edges traversed)'\n    const summary =\n      `Root cause for ${input.errorNode} is ${result.rootCauseNode}. ` +\n      result.rootCauseReason +\n      (result.fixRecommendation ? ` Recommended fix: ${result.fixRecommendation}.` : '')\n    const blockLines = [\n      `Traversal path: ${arrowPath}`,\n      `Edge provenances: ${provenances}`,\n    ]\n    if (result.fixRecommendation) {\n      blockLines.push(`Recommended fix: ${result.fixRecommendation}`)\n    }\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: result.confidence,\n      provenance: result.edgeProvenances.length ? result.edgeProvenances : undefined,\n    })\n  }, `No root cause found for ${input.errorNode}. The node may be healthy, or it may not exist in the graph.`)\n}\n\nexport interface BlastRadiusInput {\n  nodeId: string\n  depth?: number\n  project?: string\n}\n\nexport async function getBlastRadius(\n  client: HttpClient,\n  input: BlastRadiusInput,\n): Promise<ToolResponse> {\n  const qs = input.depth !== undefined ? `?depth=${input.depth}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/blast-radius/${encodeURIComponent(input.nodeId)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<BlastRadiusResult>(path)\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        `${result.origin} has no downstream dependencies. Nothing else would break if it failed.`,\n      )\n    }\n    const sorted = [...result.affectedNodes].sort(\n      (a, b) => a.distance - b.distance || a.nodeId.localeCompare(b.nodeId),\n    )\n    const blockLines = sorted.map(formatBlastEntry)\n    // Worst-case confidence — the path with the lowest cascaded confidence\n    // is the headline number; agents should treat this as \"what's the\n    // weakest reachability NEAT actually knows about?\"\n    const minConfidence = sorted.reduce(\n      (m, n) => Math.min(m, n.confidence),\n      Number.POSITIVE_INFINITY,\n    )\n    const provenances = [...new Set(sorted.map((n) => n.edgeProvenance))]\n    return formatToolResponse({\n      summary: `Blast radius for ${result.origin}: ${result.totalAffected} affected node${result.totalAffected === 1 ? '' : 's'} reachable downstream.`,\n      block: blockLines.join('\\n'),\n      confidence: Number.isFinite(minConfidence) ? minConfidence : undefined,\n      provenance: provenances.length ? provenances : undefined,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction formatBlastEntry(n: BlastRadiusAffectedNode): string {\n  const tag = n.edgeProvenance === Provenance.STALE ? ' [STALE — last seen too long ago]' : ''\n  return `  • ${n.nodeId} (distance ${n.distance}, ${n.edgeProvenance})${tag}`\n}\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\nexport interface DependenciesInput {\n  nodeId: string\n  // BFS depth. Default 3; max 10. Direct-only consumers pass 1.\n  depth?: number\n  project?: string\n}\n\n// Transitive get_dependencies (issue #144). Calls the core endpoint\n// /graph/dependencies/:nodeId?depth=N which BFS-walks outbound. The output\n// groups results by hop so direct dependencies stand out from transitives —\n// agents asked \"what does X depend on?\" usually want the direct list with\n// transitives as context.\nexport async function getDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  const depth = input.depth ?? 3\n  const path = projectPath(\n    input.project,\n    `/graph/dependencies/${encodeURIComponent(input.nodeId)}?depth=${depth}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<TransitiveDependenciesResult>(path)\n    if (result.total === 0) {\n      return formatEmptyResponse(\n        depth === 1\n          ? `${input.nodeId} has no direct dependencies in the graph.`\n          : `${input.nodeId} has no dependencies (BFS to depth ${depth}).`,\n      )\n    }\n    // Group by distance so the structured block reads as concentric rings.\n    const byDistance = new Map<number, typeof result.dependencies>()\n    for (const dep of result.dependencies) {\n      const ring = byDistance.get(dep.distance) ?? []\n      ring.push(dep)\n      byDistance.set(dep.distance, ring)\n    }\n    const blockLines: string[] = []\n    for (const distance of [...byDistance.keys()].sort((a, b) => a - b)) {\n      const label = distance === 1 ? 'Direct (distance 1)' : `Distance ${distance}`\n      blockLines.push(`${label}:`)\n      for (const dep of byDistance.get(distance)!) {\n        blockLines.push(`  • ${dep.nodeId} — ${dep.edgeType} (${dep.provenance})`)\n      }\n    }\n    const provenances = [...new Set(result.dependencies.map((d) => d.provenance))]\n    const directCount = byDistance.get(1)?.length ?? 0\n    const summary =\n      depth === 1\n        ? `${input.nodeId} has ${directCount} direct dependenc${directCount === 1 ? 'y' : 'ies'}.`\n        : `${input.nodeId} has ${result.total} dependenc${result.total === 1 ? 'y' : 'ies'} reachable to depth ${depth} (${directCount} direct).`\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      provenance: provenances,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport async function getObservedDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const edges = await client.get<EdgesResponse>(\n      projectPath(input.project, `/graph/edges/${encodeURIComponent(input.nodeId)}`),\n    )\n    const observed = edges.outbound.filter((e) => e.provenance === Provenance.OBSERVED)\n    if (observed.length === 0) {\n      const hasExtracted = edges.outbound.some((e) => e.provenance === Provenance.EXTRACTED)\n      const note = hasExtracted\n        ? ' Static (EXTRACTED) dependencies exist but no runtime traffic has been seen — is OTel running?'\n        : ''\n      return formatEmptyResponse(`No OBSERVED dependencies for ${input.nodeId}.${note}`)\n    }\n    const blockLines = observed.map((e) => `  • ${e.target} — ${e.type}${edgeMeta(e)}`)\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${observed.length} runtime dependenc${observed.length === 1 ? 'y' : 'ies'} confirmed by OTel.`,\n      block: blockLines.join('\\n'),\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction edgeMeta(e: GraphEdge): string {\n  const bits: string[] = []\n  if (e.signal) {\n    // Prefer the runtime signal numbers — \"saw 1,247 calls, 3 errors\" reads\n    // better than a derived 0.94 confidence.\n    bits.push(`spans=${e.signal.spanCount}`)\n    if (e.signal.errorCount > 0) bits.push(`errors=${e.signal.errorCount}`)\n    if (e.signal.lastObservedAgeMs !== undefined) {\n      bits.push(`age=${formatDuration(e.signal.lastObservedAgeMs)}`)\n    }\n  } else if (e.callCount !== undefined) {\n    bits.push(`callCount=${e.callCount}`)\n  }\n  if (e.lastObserved) bits.push(`lastObserved=${e.lastObserved}`)\n  if (e.confidence !== undefined) bits.push(`confidence=${e.confidence}`)\n  return bits.length ? ` [${bits.join(', ')}]` : ''\n}\n\nfunction formatDuration(ms: number): string {\n  if (ms < 1000) return `${Math.round(ms)}ms`\n  const s = Math.round(ms / 1000)\n  if (s < 60) return `${s}s`\n  const m = Math.round(s / 60)\n  if (m < 60) return `${m}m`\n  const h = Math.round(m / 60)\n  if (h < 48) return `${h}h`\n  return `${Math.round(h / 24)}d`\n}\n\nexport interface IncidentHistoryInput {\n  nodeId: string\n  limit?: number\n  project?: string\n}\n\nexport async function getIncidentHistory(\n  client: HttpClient,\n  input: IncidentHistoryInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n      projectPath(input.project, `/incidents/${encodeURIComponent(input.nodeId)}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(`No incidents recorded against ${input.nodeId}.`)\n    }\n    // ndjson order is append-time = oldest first. Reverse so the most recent\n    // event leads, then trim to the requested limit.\n    const ordered = [...events].reverse().slice(0, input.limit ?? 20)\n    const blockLines: string[] = []\n    for (const ev of ordered) {\n      blockLines.push(`  ${ev.timestamp} — ${ev.service}: ${ev.errorMessage}`)\n      blockLines.push(`    trace=${ev.traceId} span=${ev.spanId}`)\n    }\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${body.total} recorded incident${body.total === 1 ? '' : 's'}; showing the ${ordered.length} most recent.`,\n      block: blockLines.join('\\n'),\n      // ErrorEvents are observation records, not graph edges — provenance is\n      // OBSERVED by definition (the OTel span happened).\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport interface SemanticSearchInput {\n  query: string\n  project?: string\n}\n\ninterface SearchResponse {\n  query: string\n  provider?: 'ollama' | 'transformers' | 'substring'\n  matches: (GraphNode & { score?: number })[]\n}\n\nexport async function semanticSearch(\n  client: HttpClient,\n  input: SemanticSearchInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<SearchResponse>(\n      projectPath(input.project, `/search?q=${encodeURIComponent(input.query)}`),\n    )\n    if (result.matches.length === 0) {\n      return formatEmptyResponse(`No matches for \"${input.query}\".`)\n    }\n    const provider = result.provider ?? 'substring'\n    const blockLines: string[] = []\n    let topScore: number | undefined\n    for (const n of result.matches) {\n      // Embedding tiers attach a cosine score in [0,1]; substring fallback\n      // doesn't, so we elide the score when it's the placeholder 1.\n      const score = provider !== 'substring' && typeof n.score === 'number' ? n.score : undefined\n      const scoreBit = score !== undefined ? ` [score=${score.toFixed(2)}]` : ''\n      if (score !== undefined && (topScore === undefined || score > topScore)) topScore = score\n      blockLines.push(\n        `  • ${n.id} (${n.type}) — ${(n as { name?: string }).name ?? n.id}${scoreBit}`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Found ${result.matches.length} match${result.matches.length === 1 ? '' : 'es'} for \"${input.query}\" via ${provider} provider.`,\n      block: blockLines.join('\\n'),\n      // Top similarity score doubles as a \"how confident is the embedder\n      // about the best match\" signal. Substring provider returns no score —\n      // the footer shows n/a in that case.\n      confidence: topScore,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface GraphDiffInput {\n  againstSnapshot: string\n  project?: string\n}\n\ninterface GraphDiffResponse {\n  base: { exportedAt?: string }\n  current: { exportedAt: string }\n  added: { nodes: GraphNode[]; edges: GraphEdge[] }\n  removed: { nodes: GraphNode[]; edges: GraphEdge[] }\n  changed: {\n    nodes: { id: string; before: GraphNode; after: GraphNode }[]\n    edges: { id: string; before: GraphEdge; after: GraphEdge }[]\n  }\n}\n\nexport async function getGraphDiff(\n  client: HttpClient,\n  input: GraphDiffInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<GraphDiffResponse>(\n      projectPath(\n        input.project,\n        `/graph/diff?against=${encodeURIComponent(input.againstSnapshot)}`,\n      ),\n    )\n    const total =\n      result.added.nodes.length +\n      result.added.edges.length +\n      result.removed.nodes.length +\n      result.removed.edges.length +\n      result.changed.nodes.length +\n      result.changed.edges.length\n    const baseLabel = result.base.exportedAt ?? 'unknown'\n    if (total === 0) {\n      return formatEmptyResponse(\n        `No differences between the current graph and ${input.againstSnapshot} (base exportedAt=${baseLabel}).`,\n      )\n    }\n    const blockLines: string[] = [\n      `  base exportedAt:    ${baseLabel}`,\n      `  current exportedAt: ${result.current.exportedAt}`,\n      '',\n    ]\n    if (result.added.nodes.length || result.added.edges.length) {\n      blockLines.push('Added:')\n      for (const n of result.added.nodes) blockLines.push(`  + node ${n.id} (${n.type})`)\n      for (const e of result.added.edges)\n        blockLines.push(`  + edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.removed.nodes.length || result.removed.edges.length) {\n      blockLines.push('Removed:')\n      for (const n of result.removed.nodes) blockLines.push(`  - node ${n.id} (${n.type})`)\n      for (const e of result.removed.edges)\n        blockLines.push(`  - edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.changed.nodes.length || result.changed.edges.length) {\n      blockLines.push('Changed:')\n      for (const c of result.changed.nodes) {\n        blockLines.push(`  ~ node ${c.id} — ${summariseAttrDiff(c.before, c.after)}`)\n      }\n      for (const c of result.changed.edges) {\n        const provBit =\n          c.before.provenance !== c.after.provenance\n            ? `provenance ${c.before.provenance} → ${c.after.provenance}`\n            : summariseAttrDiff(c.before, c.after)\n        blockLines.push(`  ~ edge ${c.id} — ${provBit}`)\n      }\n    }\n    return formatToolResponse({\n      summary: `Diff against ${input.againstSnapshot}: ${total} change${total === 1 ? '' : 's'} between the snapshot and the live graph.`,\n      block: blockLines.join('\\n').trimEnd(),\n      // Diff results don't have a per-result provenance — the diff spans\n      // every edge type and provenance kind. Footer shows n/a.\n    })\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 400) {\n      return formatErrorResponse(\n        `Could not load snapshot ${input.againstSnapshot}: ${err.message}`,\n      )\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nfunction summariseAttrDiff(\n  before: Record<string, unknown>,\n  after: Record<string, unknown>,\n): string {\n  const keys = new Set([...Object.keys(before), ...Object.keys(after)])\n  const changed: string[] = []\n  for (const k of keys) {\n    if (JSON.stringify(before[k]) !== JSON.stringify(after[k])) changed.push(k)\n  }\n  return changed.length === 0\n    ? 'attributes differ'\n    : `fields changed: ${changed.sort().join(', ')}`\n}\n\nexport interface RecentStaleEdgesInput {\n  limit?: number\n  edgeType?: string\n  project?: string\n}\n\ninterface StaleEventResponse {\n  edgeId: string\n  source: string\n  target: string\n  edgeType: string\n  thresholdMs: number\n  ageMs: number\n  lastObserved: string\n  transitionedAt: string\n}\n\nexport async function getRecentStaleEdges(\n  client: HttpClient,\n  input: RecentStaleEdgesInput,\n): Promise<ToolResponse> {\n  const params = new URLSearchParams()\n  if (input.limit !== undefined) params.set('limit', String(input.limit))\n  if (input.edgeType) params.set('edgeType', input.edgeType)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n\n  try {\n    const body = await client.get<{ count: number; total: number; events: StaleEventResponse[] }>(\n      projectPath(input.project, `/stale-events${qs}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(\n        input.edgeType\n          ? `No stale ${input.edgeType} edges recorded.`\n          : 'No stale-edge transitions recorded yet.',\n      )\n    }\n    const blockLines = events.map(\n      (e) =>\n        `  ${e.transitionedAt} — ${e.source} -[${e.edgeType}]-> ${e.target}` +\n        ` (last seen ${e.lastObserved}, threshold ${formatDuration(e.thresholdMs)})`,\n    )\n    return formatToolResponse({\n      summary: `${events.length} stale-edge transition${events.length === 1 ? '' : 's'} recorded${input.edgeType ? ` for ${input.edgeType}` : ''}.`,\n      block: blockLines.join('\\n'),\n      // STALE by definition — every event is a transition into STALE.\n      provenance: Provenance.STALE,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface CheckPoliciesInput {\n  // 'all' (default) returns every current violation. 'unresolved' is reserved\n  // for future resolution tracking — for the MVP it behaves the same as 'all'.\n  // { policyId } narrows to violations of one named policy.\n  scope?: 'all' | 'unresolved' | { policyId: string }\n  // When provided, dry-run evaluation: return violations that *would* result\n  // if the action were applied. Without it, return current violations.\n  hypotheticalAction?: HypotheticalAction\n  project?: string\n}\n\ninterface PoliciesCheckResponse {\n  allowed: boolean\n  hypotheticalAction?: HypotheticalAction\n  violations: PolicyViolation[]\n}\n\n// check_policies — single MCP tool covering both state-read and dry-run modes\n// per ADR-045. The contract explicitly rejects the audit's two-tool split\n// (evaluate_policy + get_policy_violations); both modes route through here.\nexport async function checkPolicies(\n  client: HttpClient,\n  input: CheckPoliciesInput,\n): Promise<ToolResponse> {\n  try {\n    let violations: PolicyViolation[]\n    let allowed = true\n    let hypothetical: HypotheticalAction | undefined\n\n    if (input.hypotheticalAction) {\n      // Dry-run via POST /policies/check.\n      const body = await postJson<PoliciesCheckResponse>(\n        client,\n        projectPath(input.project, '/policies/check'),\n        { hypotheticalAction: input.hypotheticalAction },\n      )\n      violations = body.violations\n      allowed = body.allowed\n      hypothetical = body.hypotheticalAction\n    } else {\n      // State read via GET /policies/violations. Optional scope filters via\n      // ?policyId=, severity isn't surfaced in the tool input today.\n      const qsParams = new URLSearchParams()\n      if (typeof input.scope === 'object' && 'policyId' in input.scope) {\n        qsParams.set('policyId', input.scope.policyId)\n      }\n      const qs = qsParams.size > 0 ? `?${qsParams.toString()}` : ''\n      const body = await client.get<{ violations: PolicyViolation[] }>(\n        projectPath(input.project, `/policies/violations${qs}`),\n      )\n      violations = body.violations\n      allowed = violations.every((v) => v.onViolation !== 'block')\n    }\n\n    if (violations.length === 0) {\n      return formatEmptyResponse(\n        hypothetical\n          ? `No violations would result from the hypothetical action (${hypothetical.kind}).`\n          : 'No policy violations recorded.',\n      )\n    }\n\n    const blockCount = violations.filter((v) => v.onViolation === 'block').length\n    const summaryParts: string[] = []\n    if (hypothetical) {\n      summaryParts.push(\n        `Hypothetical ${hypothetical.kind} would surface ${violations.length} violation${violations.length === 1 ? '' : 's'}`,\n      )\n    } else {\n      summaryParts.push(\n        `${violations.length} policy violation${violations.length === 1 ? '' : 's'} currently recorded`,\n      )\n    }\n    if (blockCount > 0) {\n      summaryParts.push(`${blockCount} of which block`)\n    }\n    if (!allowed && hypothetical) {\n      summaryParts.push('action denied')\n    }\n    const summary = summaryParts.join('; ') + '.'\n\n    const blockLines = violations.map((v) => {\n      const subject = v.subject.nodeId ?? v.subject.edgeId ?? v.subject.path?.[0] ?? '(global)'\n      return `  • [${v.severity}/${v.onViolation}] ${v.policyName}: ${v.message} — ${subject}`\n    })\n    const severities = [...new Set(violations.map((v) => v.severity))]\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      // Confidence: hypothetical results inherit a 0.7 cap (the engine\n      // can't fully simulate every action shape in MVP); confirmed\n      // violations report 1.00 since the engine ran against current state.\n      confidence: hypothetical ? 0.7 : 1,\n      provenance: severities.join(' '),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\n// ──────────────────────────────────────────────────────────────────────────\n// get_divergences (ADR-060) — the thesis surface\n// ──────────────────────────────────────────────────────────────────────────\n\nexport interface DivergencesInput {\n  type?: ReadonlyArray<DivergenceType>\n  minConfidence?: number\n  node?: string\n  project?: string\n}\n\nfunction buildDivergencesPath(input: DivergencesInput): string {\n  const params = new URLSearchParams()\n  if (input.type && input.type.length > 0) params.set('type', input.type.join(','))\n  if (input.minConfidence !== undefined) {\n    params.set('minConfidence', String(input.minConfidence))\n  }\n  if (input.node) params.set('node', input.node)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n  return projectPath(input.project, `/graph/divergences${qs}`)\n}\n\nfunction formatDivergenceLine(d: Divergence): string {\n  switch (d.type) {\n    case 'missing-observed':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'missing-extracted':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'version-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared ${d.extractedVersion}, observed engine ${d.observedVersion} (${d.compatibility})`\n    case 'host-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared host ${d.extractedHost}, observed host ${d.observedHost}`\n    case 'compat-violation':\n      return `  • [${d.type}] ${d.source} → ${d.target} — ${d.rule.kind}${d.rule.package ? ` (${d.rule.package})` : ''}`\n  }\n}\n\nexport async function getDivergences(\n  client: HttpClient,\n  input: DivergencesInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<DivergenceResult>(buildDivergencesPath(input))\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        'No divergences found between the declared (EXTRACTED) and observed (OBSERVED) views of the graph.',\n      )\n    }\n    // Sorted by confidence descending already; first entry is the headline.\n    const headline = result.divergences[0]!\n    const summary =\n      `Found ${result.totalAffected} divergence${result.totalAffected === 1 ? '' : 's'} between code and production. ` +\n      `Highest-confidence: ${headline.type} on ${headline.source} → ${headline.target}. ${headline.reason}`\n    const blockLines: string[] = []\n    for (const d of result.divergences) {\n      blockLines.push(formatDivergenceLine(d))\n      blockLines.push(`    reason: ${d.reason}`)\n      blockLines.push(`    recommendation: ${d.recommendation}`)\n    }\n    const maxConfidence = result.divergences.reduce(\n      (m, d) => Math.max(m, d.confidence),\n      0,\n    )\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: maxConfidence,\n      // Composite provenance — divergences sit between EXTRACTED and\n      // OBSERVED by construction; that's what makes them divergences.\n      provenance: 'composite (EXTRACTED + OBSERVED)',\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nasync function postJson<T>(\n  client: HttpClient,\n  path: string,\n  body: unknown,\n): Promise<T> {\n  // The base HttpClient interface only exposes get(). For POST we need to\n  // reach into the underlying transport. Most callers pass the client built\n  // by createHttpClient which has post; types are kept minimal so test\n  // stubs don't have to implement post unless the tool needs it.\n  const c = client as HttpClient & { post?: <U>(p: string, b: unknown) => Promise<U> }\n  if (typeof c.post !== 'function') {\n    throw new Error('HttpClient does not support POST — required for check_policies dry-run')\n  }\n  return c.post<T>(path, body)\n}\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nexport interface ListUninstrumentedInput {\n  project?: string\n}\n\ninterface LibraryCoverageResult {\n  library: string\n  coverage: string\n  installedVersion?: string\n  instrumentation_package?: string\n  package_version?: string\n  registration?: string\n  notes?: string\n}\n\nexport async function neatListUninstrumented(\n  client: HttpClient,\n  input: ListUninstrumentedInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<{ libraries: LibraryCoverageResult[] }>(\n      projectPath(input.project, '/extend/list-uninstrumented'),\n    )\n    const libs = result.libraries\n    if (libs.length === 0) {\n      return formatEmptyResponse(\n        'All detected libraries are covered by the auto-instrumentations bundle or the HTTP fallback. No extension needed.',\n      )\n    }\n    const blockLines = libs.map((l) => {\n      const pkgBit = l.instrumentation_package ? ` → ${l.instrumentation_package}@${l.package_version ?? '*'}` : ' → no registry entry'\n      return `  • ${l.library} [${l.coverage}]${pkgBit}${l.notes ? ` — ${l.notes}` : ''}`\n    })\n    return formatToolResponse({\n      summary: `${libs.length} librar${libs.length === 1 ? 'y needs' : 'ies need'} instrumentation beyond the auto-instrumentations bundle.`,\n      block: blockLines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface LookupInstrumentationInput {\n  library: string\n  installedVersion?: string\n  project?: string\n}\n\nexport async function neatLookupInstrumentation(\n  client: HttpClient,\n  input: LookupInstrumentationInput,\n): Promise<ToolResponse> {\n  const qs = input.installedVersion ? `?library=${encodeURIComponent(input.library)}&version=${encodeURIComponent(input.installedVersion)}` : `?library=${encodeURIComponent(input.library)}`\n  try {\n    const result = await client.get<LibraryCoverageResult>(\n      projectPath(input.project, `/extend/lookup${qs}`),\n    )\n    const lines = [\n      `  coverage: ${result.coverage}`,\n      ...(result.instrumentation_package ? [`  instrumentation_package: ${result.instrumentation_package}@${result.package_version ?? '*'}`] : []),\n      ...(result.registration ? [`  registration: ${result.registration}`] : []),\n      ...(result.notes ? 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What was found and why it matters.\n  summary: string\n  // Structured block. The formatted typed payload — usually a bullet list,\n  // sometimes a multi-section breakdown. May be empty when the summary\n  // already conveys everything.\n  block?: string\n  // Per-result confidence in [0, 1]. Undefined → footer reads \"n/a\".\n  confidence?: number\n  // Per-result provenance. Single value, or an array if the result spans\n  // mixed provenances (e.g. a path of OBSERVED + EXTRACTED edges). Undefined\n  // → footer reads \"n/a\".\n  provenance?: string | string[]\n  // Set on transport / 5xx errors. Routes through ToolResponse.isError so\n  // MCP clients can surface a non-\"normal\" return.\n  isError?: boolean\n}\n\nfunction formatFooter(\n  confidence: number | undefined,\n  provenance: string | string[] | undefined,\n): string {\n  const c = confidence === undefined ? 'n/a' : confidence.toFixed(2)\n  const p =\n    provenance === undefined\n      ? 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+{"version":3,"sources":["../src/index.ts","../src/base-url.ts","../src/client.ts","../src/resources.ts","../src/tools.ts","../src/format.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { McpServer, type ToolCallback } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js'\nimport { z } from 'zod'\nimport {\n  CheckPoliciesScopeSchema,\n  DivergenceTypeSchema,\n  HypotheticalActionSchema,\n  type MCPToolName,\n} from '@neat.is/types'\nimport { resolveBaseUrl } from './base-url.js'\nimport { createHttpClient } from './client.js'\nimport { registerResources } from './resources.js'\nimport {\n  checkPolicies,\n  getBlastRadius,\n  getDependencies,\n  getDivergences,\n  getGraphDiff,\n  getIncidentHistory,\n  getObservedDependencies,\n  getRecentStaleEdges,\n  getRootCause,\n  neatApplyExtension,\n  neatDescribeProjectInstrumentation,\n  neatDryRunExtension,\n  neatListUninstrumented,\n  neatLookupInstrumentation,\n  neatRollbackExtension,\n  semanticSearch,\n} from './tools.js'\n\nconst baseUrl = resolveBaseUrl()\n// ADR-073 §3 — carry the operator's bearer to a secured core. Sourced from\n// NEAT_AUTH_TOKEN, the same env the daemon enforces against; empty/unset\n// keeps the header off so a loopback dev core stays reachable.\nconst authToken = process.env.NEAT_AUTH_TOKEN\nconst client = createHttpClient(baseUrl, authToken && authToken.length > 0 ? authToken : undefined)\n\n// `NEAT_DEFAULT_PROJECT` is the implicit project for tool calls that don't\n// pass a `project` arg. Unset means \"use the core's `default` project\" — we\n// route those calls through the legacy unprefixed URL so an older core (one\n// that predates #83) still gets the request it expects.\nconst defaultProject = process.env.NEAT_DEFAULT_PROJECT\nconst projectFor = (input: { project?: string }): string | undefined =>\n  input.project ?? defaultProject\n\nconst projectField = z\n  .string()\n  .optional()\n  .describe(\n    'Project name when the core hosts more than one (set NEAT_PROJECTS=...). Omit to use the default project.',\n  )\n\nconst server = new McpServer({\n  name: 'neat',\n  version: '0.1.0',\n})\n\n// Register every MCP tool through this wrapper, not server.tool directly.\n// The tool name is constrained to MCP_TOOL_NAMES in @neat.is/types — add the\n// name there first or this won't compile. The contracts audit also checks\n// that registrations and the manifest match both ways, so the tool surface\n// can't drift from the contract again.\nconst registerTool = <Args extends z.ZodRawShape>(\n  name: MCPToolName,\n  description: string,\n  paramsSchema: Args,\n  cb: ToolCallback<Args>,\n): ReturnType<typeof server.tool> => server.tool(name, description, paramsSchema, cb)\n\nregisterTool(\n  'get_root_cause',\n  'Trace a failing node up its dependency graph to find the underlying cause. Use this when something is breaking and you want to know which upstream component is the actual culprit.',\n  {\n    errorNode: z\n      .string()\n      .describe('Graph node id where the error surfaced, e.g. \"database:payments-db\"'),\n    errorId: z\n      .string()\n      .optional()\n      .describe('Specific error event id from incident history; if set, the result is coloured with that error message'),\n    project: projectField,\n  },\n  async (input) => getRootCause(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_blast_radius',\n  'List every node downstream of the given node — what would break if this node failed or was redeployed.',\n  {\n    nodeId: z.string().describe('Graph node id to compute blast radius from'),\n    depth: z\n      .number()\n      .int()\n      .nonnegative()\n      .max(20)\n      .optional()\n      .describe('Max BFS depth (default 10)'),\n    project: projectField,\n  },\n  async (input) => getBlastRadius(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_dependencies',\n  'List the transitive outgoing dependencies of a node, BFS to depth N (default 3, max 10). Each result carries distance, edge type, and provenance — both static (EXTRACTED) and runtime (OBSERVED). Pass depth=1 for direct-only.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    depth: z\n      .number()\n      .int()\n      .min(1)\n      .max(10)\n      .optional()\n      .describe('BFS depth (default 3, max 10). depth=1 returns direct dependencies only.'),\n    project: projectField,\n  },\n  async (input) => getDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_observed_dependencies',\n  'List only the runtime (OBSERVED via OTel) outgoing dependencies of a node. Use this to compare what code SAYS the service depends on vs what production actually does.',\n  {\n    nodeId: z.string().describe('Graph node id to inspect'),\n    project: projectField,\n  },\n  async (input) => getObservedDependencies(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_incident_history',\n  'Return recent OTel error events recorded against a node, most recent first.',\n  {\n    nodeId: z.string().describe('Graph node id to query'),\n    limit: z.number().int().positive().max(100).optional().describe('Max events to return (default 20)'),\n    project: projectField,\n  },\n  async (input) => getIncidentHistory(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'semantic_search',\n  'Search nodes by natural-language query. Uses embedding vectors when an embedder is available (Ollama nomic-embed-text → in-process MiniLM → substring fallback) — phrase the query the way you would describe what you want.',\n  {\n    query: z.string().describe('Free-text query, e.g. \"service handling checkout payments\"'),\n    project: projectField,\n  },\n  async (input) => semanticSearch(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_graph_diff',\n  'Diff a saved graph snapshot against the current live graph. Useful for change reviews and post-incidents — answers \"what changed in the architecture between then and now.\" Returns added/removed/changed nodes and edges with both snapshot timestamps.',\n  {\n    againstSnapshot: z\n      .string()\n      .describe(\n        'Path or http(s) URL of the snapshot to diff against (the \"before\" state). The current graph is the \"after\".',\n      ),\n    project: projectField,\n  },\n  async (input) => getGraphDiff(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_recent_stale_edges',\n  'List the most recent OBSERVED → STALE edge transitions. Use this to spot integrations that have gone quiet — a CALLS edge that just went stale typically means an upstream stopped calling, not that the link is healthy.',\n  {\n    limit: z\n      .number()\n      .int()\n      .positive()\n      .max(200)\n      .optional()\n      .describe('Max events to return (default 50)'),\n    edgeType: z\n      .string()\n      .optional()\n      .describe('Filter by edge type — e.g. \"CALLS\" or \"CONNECTS_TO\"'),\n    project: projectField,\n  },\n  async (input) => getRecentStaleEdges(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'get_divergences',\n  \"Returns places where what the code declares (EXTRACTED) doesn't match what production observed (OBSERVED). The single most NEAT-shaped query — the one that justifies the whole graph. Use when the user asks 'is anything weird?' or 'what does production do that the code doesn't?' or 'find me a bug' on an unfamiliar codebase. Returns divergences ranked by confidence × severity. Prefer this over `get_root_cause` when no specific node is failing.\",\n  {\n    type: z\n      .array(DivergenceTypeSchema)\n      .optional()\n      .describe(\n        'Filter by divergence type. One or more of: missing-observed, missing-extracted, version-mismatch, host-mismatch, compat-violation. Omit for all.',\n      ),\n    minConfidence: z\n      .number()\n      .min(0)\n      .max(1)\n      .optional()\n      .describe('Drop divergences below this confidence threshold (0.0 - 1.0).'),\n    node: z\n      .string()\n      .optional()\n      .describe('Scope to divergences involving this node id (as source or target).'),\n    project: projectField,\n  },\n  async (input) =>\n    getDivergences(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'check_policies',\n  'Inspect or dry-run the project\\'s policy.json. Without hypotheticalAction, returns currently-recorded violations. With hypotheticalAction, returns violations that would result if the action were applied. Architectural assertions in five shapes (structural / compatibility / provenance / ownership / blast-radius).',\n  {\n    scope: CheckPoliciesScopeSchema.optional().describe(\n      'Narrow to a subset. Default \"all\".',\n    ),\n    hypotheticalAction: HypotheticalActionSchema.optional().describe(\n      'Dry-run mode: simulate the action and return resulting violations. Omit for current state.',\n    ),\n    project: projectField,\n  },\n  async (input) =>\n    checkPolicies(client, {\n      ...input,\n      project: projectFor(input),\n    } as Parameters<typeof checkPolicies>[1]),\n)\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nregisterTool(\n  'neat_list_uninstrumented',\n  'List libraries in the project that need instrumentation beyond the auto-instrumentations bundle. Returns first-party, third-party, and gap libraries that require an explicit instrumentation package.',\n  { project: projectField },\n  async (input) => neatListUninstrumented(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_lookup_instrumentation',\n  'Look up the registry entry for a specific library. Returns the canonical instrumentation package, version, and registration snippet if one exists.',\n  {\n    library: z.string().describe('npm package name, e.g. \"@prisma/client\"'),\n    installedVersion: z.string().optional().describe('Installed version for range matching'),\n    project: projectField,\n  },\n  async (input) => neatLookupInstrumentation(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_describe_project_instrumentation',\n  'Describe the current state of OTel instrumentation in the project: which hook files exist, whether .env.neat is present, which OTel deps are installed.',\n  { project: projectField },\n  async (input) => neatDescribeProjectInstrumentation(client, { project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_apply_extension',\n  'Install an instrumentation package and splice its registration into the existing OTel hook file. Idempotent — calling twice with the same args is a no-op. Only modifies instrumentation files, package.json, and the lockfile (via the project package manager).',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array, e.g. \"instrumentations.push(new PrismaInstrumentation())\"'),\n    project: projectField,\n  },\n  async (input) => neatApplyExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_dry_run_extension',\n  'Preview what neat_apply_extension would do without making any changes. Returns the exact file diff, deps to add, and install command.',\n  {\n    library: z.string().describe('The library being instrumented, e.g. \"@prisma/client\"'),\n    instrumentation_package: z.string().describe('The instrumentation npm package, e.g. \"@prisma/instrumentation\"'),\n    version: z.string().describe('Semver range for the instrumentation package, e.g. \"^6.0.0\"'),\n    registration_snippet: z.string().describe('The JS/TS snippet to splice into the instrumentations array'),\n    project: projectField,\n  },\n  async (input) => neatDryRunExtension(client, { ...input, project: projectFor(input) }),\n)\n\nregisterTool(\n  'neat_rollback_extension',\n  'Undo the last neat_apply_extension for a given library. Removes the dep from package.json and the registration from the hook file. Does not re-run the package manager — run install manually to sync the lockfile.',\n  {\n    library: z.string().describe('The library whose instrumentation should be rolled back'),\n    project: projectField,\n  },\n  async (input) => neatRollbackExtension(client, { ...input, project: projectFor(input) }),\n)\n\n// Resources sit alongside tools — same data, different access pattern. Read\n// the per-node resource for raw attrs+edges JSON; subscribe to the incidents\n// resource to be notified when new errors land. The tools above are unchanged.\nconst incidentsPollMs = process.env.NEAT_RESOURCE_POLL_MS\n  ? Number(process.env.NEAT_RESOURCE_POLL_MS)\n  : undefined\nconst resourceRegistration = registerResources(server, client, {\n  ...(incidentsPollMs !== undefined ? { incidentsPollMs } : {}),\n  ...(defaultProject ? { project: defaultProject } : {}),\n})\n\nasync function main(): Promise<void> {\n  const transport = new StdioServerTransport()\n  await server.connect(transport)\n}\n\nconst stopPolling = (): void => {\n  resourceRegistration.stop()\n}\nprocess.on('SIGTERM', stopPolling)\nprocess.on('SIGINT', stopPolling)\n\nmain().catch((err) => {\n  console.error(err)\n  process.exit(1)\n})\n","// Resolve the daemon URL the MCP server talks to.\n//\n// Under the per-project daemon model (ADR-096 / docs/contracts/project-daemon.md)\n// each project runs its own daemon on its own ports and records them in\n// `<projectRoot>/neat-out/daemon.json`. The MCP server points at the daemon for\n// the project it was launched in, so resolution walks up from the cwd to the\n// nearest `neat-out/daemon.json` and uses its REST port. An explicit\n// `NEAT_CORE_URL` / `NEAT_API_URL` still wins — that's how the hosted/prod\n// substrate pins the MCP server at a fixed daemon — and the canonical loopback\n// default catches the case where neither the env nor a daemon record is present.\n//\n// `NEAT_API_URL` is honored as an accepted alias so configs written by older\n// `neat skill` versions — which emitted `NEAT_API_URL` — still reach the daemon\n// (#488). `NEAT_CORE_URL` wins when both are set.\n//\n// Lives in its own module so the resolution is testable without importing\n// index.ts, which starts the stdio transport on load.\nimport { readFileSync } from 'node:fs'\nimport { dirname, join } from 'node:path'\n\nconst DEFAULT_BASE_URL = 'http://localhost:8080'\n\n// The slice of `neat-out/daemon.json` the MCP server depends on. The full record\n// (pid, projectPath, otlp/web ports, …) is owned by the daemon writer; the MCP\n// server only needs the REST port and the liveness status. We read the file as\n// plain JSON rather than importing the writer's type so this stays decoupled\n// from the daemon package that owns the schema.\ninterface DaemonRecordShape {\n  status?: unknown\n  ports?: { rest?: unknown }\n}\n\n// Read the REST base URL out of a project's `neat-out/daemon.json`, walking up\n// from `cwd` to the filesystem root to find the nearest one. Returns undefined\n// for every failure mode — no file, unreadable, malformed JSON, a stopped\n// daemon, or a missing/invalid REST port — so the caller falls through to the\n// next precedence level rather than the MCP server failing to start.\nfunction resolveFromDaemonRecord(cwd: string): string | undefined {\n  let dir = cwd\n  // Walk parents until the path stops changing (the filesystem root, where\n  // dirname() is a fixed point).\n  for (;;) {\n    const url = readDaemonRecord(join(dir, 'neat-out', 'daemon.json'))\n    if (url !== undefined) return url\n\n    const parent = dirname(dir)\n    if (parent === dir) return undefined\n    dir = parent\n  }\n}\n\nfunction readDaemonRecord(path: string): string | undefined {\n  let raw: string\n  try {\n    raw = readFileSync(path, 'utf8')\n  } catch {\n    // No daemon.json here (the common case while walking up). Keep looking.\n    return undefined\n  }\n\n  let record: DaemonRecordShape\n  try {\n    record = JSON.parse(raw) as DaemonRecordShape\n  } catch {\n    // A daemon.json that exists but is garbage: a daemon caught mid-write, a\n    // truncated file. Treat it as absent rather than crashing the MCP server.\n    return undefined\n  }\n\n  if (record == null || typeof record !== 'object') return undefined\n  // A daemon that has marked itself stopped no longer answers on its ports.\n  if (record.status === 'stopped') return undefined\n\n  const rest = record.ports?.rest\n  if (typeof rest !== 'number' || !Number.isInteger(rest) || rest <= 0 || rest > 65535) {\n    return undefined\n  }\n\n  return `http://localhost:${rest}`\n}\n\nexport function resolveBaseUrl(\n  env: NodeJS.ProcessEnv = process.env,\n  cwd: string = process.cwd(),\n): string {\n  const override = env.NEAT_CORE_URL ?? env.NEAT_API_URL\n  if (override) return override\n\n  return resolveFromDaemonRecord(cwd) ?? DEFAULT_BASE_URL\n}\n","// Thin HTTP client for the neat-core REST surface. Tools call out via this\n// instead of fetch() directly so tests can swap in a stub implementation\n// without monkey-patching globals.\n\nexport interface HttpClient {\n  get<T>(path: string): Promise<T>\n  // POST is optional on the interface so test stubs that only need GET don't\n  // have to implement it. Production createHttpClient always provides it.\n  post?<T>(path: string, body: unknown): Promise<T>\n}\n\n// ADR-073 §3 — the MCP server is a first-party read client, so it carries the\n// operator's bearer on every call the same way the CLI does. `bearerToken`\n// comes from `NEAT_AUTH_TOKEN` (sourced once in index.ts). Empty / undefined\n// keeps the header off, so an unauthenticated loopback dev daemon still works.\nexport function createHttpClient(baseUrl: string, bearerToken?: string): HttpClient {\n  const root = baseUrl.replace(/\\/$/, '')\n  const authHeader =\n    bearerToken && bearerToken.length > 0\n      ? { authorization: `Bearer ${bearerToken}` }\n      : {}\n  return {\n    async get<T>(path: string): Promise<T> {\n      const res = await fetch(`${root}${path}`, { headers: { ...authHeader } })\n      if (!res.ok) {\n        const body = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on GET ${path}: ${body}`)\n      }\n      return (await res.json()) as T\n    },\n    async post<T>(path: string, body: unknown): Promise<T> {\n      const res = await fetch(`${root}${path}`, {\n        method: 'POST',\n        headers: { 'content-type': 'application/json', ...authHeader },\n        body: JSON.stringify(body),\n      })\n      if (!res.ok) {\n        const text = await res.text().catch(() => '')\n        throw new HttpError(res.status, `${res.status} ${res.statusText} on POST ${path}: ${text}`)\n      }\n      return (await res.json()) as T\n    },\n  }\n}\n\nexport class HttpError extends Error {\n  constructor(\n    public readonly status: number,\n    message: string,\n  ) {\n    super(message)\n    this.name = 'HttpError'\n  }\n}\n","// MCP Resources — additive surface alongside the eight tools. Two resources:\n//\n//   neat://node/<id>          — one resource per graph node. Read returns the\n//                                node attributes plus its outbound edges.\n//   neat://incidents/recent   — most recent error events. Pollable by the SDK\n//                                via subscribe; we send `notifications/resources/\n//                                updated` when /incidents grows.\n//\n// Pure read helpers are exported so tests can exercise them without spinning up\n// an MCP transport. `registerResources()` does the SDK wiring + the poll loop.\n\nimport type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js'\nimport {\n  ResourceTemplate,\n} from '@modelcontextprotocol/sdk/server/mcp.js'\nimport type {\n  ListResourcesResult,\n  ReadResourceResult,\n} from '@modelcontextprotocol/sdk/types.js'\nimport type { ErrorEvent, GraphEdge, GraphNode, PolicyViolation } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\ninterface SerializedGraph {\n  nodes: GraphNode[]\n  edges: GraphEdge[]\n}\n\nconst NODE_RESOURCE_MIME = 'application/json'\nconst INCIDENTS_URI = 'neat://incidents/recent'\nconst INCIDENTS_DEFAULT_LIMIT = 50\nconst POLICY_VIOLATIONS_URI = 'neat://policies/violations'\nconst POLICY_VIOLATIONS_DEFAULT_LIMIT = 100\n\nfunction nodeUri(id: string): string {\n  // Node ids contain `:` which RFC 6570 percent-encodes; doing it explicitly\n  // here keeps the URI we hand the SDK identical to what `list` produces.\n  return `neat://node/${encodeURIComponent(id)}`\n}\n\n// Project-aware URL prefix for the underlying core. When unset, hit the\n// legacy unprefixed routes (which the core resolves to project=`default`).\nfunction corePrefix(project: string | undefined): string {\n  return project ? `/projects/${encodeURIComponent(project)}` : ''\n}\n\nfunction nameFromAttrs(attrs: GraphNode): string {\n  return (attrs as { name?: string }).name ?? attrs.id\n}\n\nexport async function listNodeResources(\n  client: HttpClient,\n  project?: string,\n): Promise<ListResourcesResult> {\n  const graph = await client.get<SerializedGraph>(`${corePrefix(project)}/graph`)\n  return {\n    resources: graph.nodes.map((n) => ({\n      uri: nodeUri(n.id),\n      name: nameFromAttrs(n),\n      description: `${n.type} — ${nameFromAttrs(n)}`,\n      mimeType: NODE_RESOURCE_MIME,\n    })),\n  }\n}\n\nexport async function readNodeResource(\n  client: HttpClient,\n  id: string,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const uri = nodeUri(id)\n  const prefix = corePrefix(project)\n  try {\n    const [nodeBody, edges] = await Promise.all([\n      client.get<{ node: GraphNode }>(`${prefix}/graph/node/${encodeURIComponent(id)}`),\n      client.get<EdgesResponse>(`${prefix}/graph/edges/${encodeURIComponent(id)}`),\n    ])\n    const body = {\n      node: nodeBody.node,\n      // Outbound only — the issue spec says \"attrs + outbound edges\". Inbound\n      // edges are still reachable via the other endpoint and would double the\n      // payload for hub nodes (e.g. a shared database).\n      outboundEdges: edges.outbound,\n    }\n    return {\n      contents: [\n        {\n          uri,\n          mimeType: NODE_RESOURCE_MIME,\n          text: JSON.stringify(body, null, 2),\n        },\n      ],\n    }\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return {\n        contents: [\n          {\n            uri,\n            mimeType: NODE_RESOURCE_MIME,\n            text: JSON.stringify({ error: 'node not found', id }),\n          },\n        ],\n      }\n    }\n    throw err\n  }\n}\n\nexport async function readPolicyViolationsResource(\n  client: HttpClient,\n  limit: number = POLICY_VIOLATIONS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ violations: PolicyViolation[] }>(\n    `${corePrefix(project)}/policies/violations`,\n  )\n  const violations = body.violations\n  // Latest first; cap at limit so an exploding violations log doesn't blow\n  // up the resource read. The full file is still on disk for forensic use.\n  const ordered = [...violations].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: POLICY_VIOLATIONS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: violations.length, violations: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\nexport async function readRecentIncidentsResource(\n  client: HttpClient,\n  limit: number = INCIDENTS_DEFAULT_LIMIT,\n  project?: string,\n): Promise<ReadResourceResult> {\n  const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n    `${corePrefix(project)}/incidents`,\n  )\n  const events = body.events\n  // ndjson order is append-time = oldest first. Reverse so most-recent leads.\n  const ordered = [...events].reverse().slice(0, limit)\n  return {\n    contents: [\n      {\n        uri: INCIDENTS_URI,\n        mimeType: NODE_RESOURCE_MIME,\n        text: JSON.stringify(\n          { count: ordered.length, total: events.length, events: ordered },\n          null,\n          2,\n        ),\n      },\n    ],\n  }\n}\n\n// Pure helper so the poll loop can be tested without timers. Returns true when\n// the visible state of /incidents has changed in a way subscribers should hear\n// about. Compares total count + the id of the newest event — either is enough\n// on its own, but the pair makes deletes (if they ever happen) survive a\n// missed update.\nexport function incidentsChanged(\n  prev: { total: number; lastId?: string } | null,\n  next: { total: number; lastId?: string },\n): boolean {\n  if (!prev) return false // first observation seeds, doesn't notify\n  if (prev.total !== next.total) return true\n  if (prev.lastId !== next.lastId) return true\n  return false\n}\n\nexport interface RegisterResourcesOptions {\n  // Poll interval for /incidents in ms. 5s by default; 0 disables polling.\n  incidentsPollMs?: number\n  // Project this MCP instance reports against. Unset → core's `default`\n  // project via the legacy unprefixed URLs.\n  project?: string\n}\n\nexport interface ResourceRegistration {\n  // Stops the poll loop. The SDK keeps the registered resources around as\n  // long as the server is alive — calling stop() doesn't unregister them.\n  stop: () => void\n}\n\nexport function registerResources(\n  server: McpServer,\n  client: HttpClient,\n  options: RegisterResourcesOptions = {},\n): ResourceRegistration {\n  const pollMs = options.incidentsPollMs ?? 5000\n  const project = options.project\n\n  // neat://node/<id> — templated. The list callback enumerates current nodes;\n  // the read callback resolves a specific id.\n  server.registerResource(\n    'graph-node',\n    new ResourceTemplate('neat://node/{id}', {\n      list: async () => listNodeResources(client, project),\n    }),\n    {\n      description:\n        'A single graph node by id. Reading returns the node attributes plus its outbound edges as JSON.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async (_uri, variables) => {\n      const raw = variables.id\n      const id = Array.isArray(raw) ? raw[0] : raw\n      if (typeof id !== 'string' || id.length === 0) {\n        throw new Error('neat://node/{id} requires an id')\n      }\n      const decoded = id.includes('%') ? decodeURIComponent(id) : id\n      return readNodeResource(client, decoded, project)\n    },\n  )\n\n  // neat://incidents/recent — static. Subscribers get notifications/resources/\n  // updated on each tick where /incidents has changed.\n  server.registerResource(\n    'incidents-recent',\n    INCIDENTS_URI,\n    {\n      description:\n        'Most recent error events recorded by neat-core, newest first. JSON: { count, total, events[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readRecentIncidentsResource(client, INCIDENTS_DEFAULT_LIMIT, project),\n  )\n\n  // neat://policies/violations — static. Same poll-and-notify pattern as\n  // incidents. Subscribers get resource-updated notifications when the\n  // policy-violations.ndjson grows. ADR-045.\n  server.registerResource(\n    'policies-violations',\n    POLICY_VIOLATIONS_URI,\n    {\n      description:\n        'Current policy violations from policy-violations.ndjson, newest first. JSON: { count, total, violations[] }.',\n      mimeType: NODE_RESOURCE_MIME,\n    },\n    async () => readPolicyViolationsResource(client, POLICY_VIOLATIONS_DEFAULT_LIMIT, project),\n  )\n\n  let stopped = false\n  let timer: NodeJS.Timeout | null = null\n  let lastIncidents: { total: number; lastId?: string } | null = null\n  let lastViolations: { total: number; lastId?: string } | null = null\n\n  const tick = async (): Promise<void> => {\n    if (stopped) return\n    // Incidents poll.\n    try {\n      const incidents = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n        `${corePrefix(project)}/incidents`,\n      )\n      const events = incidents.events\n      const next = {\n        total: incidents.total,\n        lastId: events.length > 0 ? events[events.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastIncidents, next)) {\n        await server.server.sendResourceUpdated({ uri: INCIDENTS_URI }).catch(() => {})\n      }\n      lastIncidents = next\n    } catch {\n      // Core down — keep polling, next tick will catch up.\n    }\n    // Policy-violations poll. Fires the alert action's notifications/\n    // resources/updated for neat://policies/violations subscribers per\n    // ADR-044 §alert. Same change-detection shape as incidents.\n    try {\n      const polBody = await client.get<{ violations: PolicyViolation[] }>(\n        `${corePrefix(project)}/policies/violations`,\n      )\n      const violations = polBody.violations\n      const next = {\n        total: violations.length,\n        lastId:\n          violations.length > 0 ? violations[violations.length - 1].id : undefined,\n      }\n      if (incidentsChanged(lastViolations, next)) {\n        await server.server\n          .sendResourceUpdated({ uri: POLICY_VIOLATIONS_URI })\n          .catch(() => {})\n      }\n      lastViolations = next\n    } catch {\n      // Core down or no policies yet — keep polling.\n    }\n  }\n\n  if (pollMs > 0) {\n    // Seed `last` on first tick so we don't fire an \"updated\" notification\n    // when the server first comes up.\n    timer = setInterval(() => {\n      void tick()\n    }, pollMs)\n    if (typeof timer.unref === 'function') timer.unref()\n  }\n\n  return {\n    stop: (): void => {\n      stopped = true\n      if (timer) clearInterval(timer)\n      timer = null\n    },\n  }\n}\n","// Tool implementations. Each one takes an HttpClient + the validated input and\n// returns an MCP CallToolResult routed through formatToolResponse for the\n// three-part shape (NL + structured + footer) per ADR-039 / contract #12.\n// Keeping these as pure functions of (client, input) means tests don't need a\n// running server — just a stub client that returns canned JSON.\n\nimport type {\n  BlastRadiusAffectedNode,\n  BlastRadiusResult,\n  Divergence,\n  DivergenceResult,\n  DivergenceType,\n  ErrorEvent,\n  GraphEdge,\n  GraphNode,\n  HypotheticalAction,\n  PolicyViolation,\n  RootCauseResult,\n  TransitiveDependenciesResult,\n} from '@neat.is/types'\nimport { Provenance } from '@neat.is/types'\nimport { HttpError, type HttpClient } from './client.js'\nimport {\n  formatEmptyResponse,\n  formatErrorResponse,\n  formatToolResponse,\n  type ToolResponse,\n} from './format.js'\n\nexport type { ToolResponse } from './format.js'\n\n// Project-aware path builder. When `project` is set, route through\n// /projects/<name>/...; otherwise hit the legacy root URL (which the core\n// resolves to project=`default`). Keeping the legacy path means callers\n// running an older core still talk to a known route.\nfunction projectPath(project: string | undefined, suffix: string): string {\n  if (!project) return suffix\n  return `/projects/${encodeURIComponent(project)}${suffix}`\n}\n\n// Most tools want \"node missing → friendly message, anything else → real error\".\nasync function withMissingNodeFallback(\n  fn: () => Promise<ToolResponse>,\n  notFoundMessage: string,\n): Promise<ToolResponse> {\n  try {\n    return await fn()\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 404) {\n      return formatEmptyResponse(notFoundMessage)\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RootCauseInput {\n  errorNode: string\n  errorId?: string\n  project?: string\n}\n\nexport async function getRootCause(client: HttpClient, input: RootCauseInput): Promise<ToolResponse> {\n  const qs = input.errorId ? `?errorId=${encodeURIComponent(input.errorId)}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/root-cause/${encodeURIComponent(input.errorNode)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<RootCauseResult>(path)\n    const arrowPath = result.traversalPath.join(' ← ')\n    const provenances = result.edgeProvenances.length\n      ? result.edgeProvenances.join(', ')\n      : '(direct, no edges traversed)'\n    const summary =\n      `Root cause for ${input.errorNode} is ${result.rootCauseNode}. ` +\n      result.rootCauseReason +\n      (result.fixRecommendation ? ` Recommended fix: ${result.fixRecommendation}.` : '')\n    const blockLines = [\n      `Traversal path: ${arrowPath}`,\n      `Edge provenances: ${provenances}`,\n    ]\n    if (result.fixRecommendation) {\n      blockLines.push(`Recommended fix: ${result.fixRecommendation}`)\n    }\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: result.confidence,\n      provenance: result.edgeProvenances.length ? result.edgeProvenances : undefined,\n    })\n  }, `No root cause found for ${input.errorNode}. The node may be healthy, or it may not exist in the graph.`)\n}\n\nexport interface BlastRadiusInput {\n  nodeId: string\n  depth?: number\n  project?: string\n}\n\nexport async function getBlastRadius(\n  client: HttpClient,\n  input: BlastRadiusInput,\n): Promise<ToolResponse> {\n  const qs = input.depth !== undefined ? `?depth=${input.depth}` : ''\n  const path = projectPath(\n    input.project,\n    `/graph/blast-radius/${encodeURIComponent(input.nodeId)}${qs}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<BlastRadiusResult>(path)\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        `${result.origin} has no downstream dependencies. Nothing else would break if it failed.`,\n      )\n    }\n    const sorted = [...result.affectedNodes].sort(\n      (a, b) => a.distance - b.distance || a.nodeId.localeCompare(b.nodeId),\n    )\n    const blockLines = sorted.map(formatBlastEntry)\n    // Worst-case confidence — the path with the lowest cascaded confidence\n    // is the headline number; agents should treat this as \"what's the\n    // weakest reachability NEAT actually knows about?\"\n    const minConfidence = sorted.reduce(\n      (m, n) => Math.min(m, n.confidence),\n      Number.POSITIVE_INFINITY,\n    )\n    const provenances = [...new Set(sorted.map((n) => n.edgeProvenance))]\n    return formatToolResponse({\n      summary: `Blast radius for ${result.origin}: ${result.totalAffected} affected node${result.totalAffected === 1 ? '' : 's'} reachable downstream.`,\n      block: blockLines.join('\\n'),\n      confidence: Number.isFinite(minConfidence) ? minConfidence : undefined,\n      provenance: provenances.length ? provenances : undefined,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction formatBlastEntry(n: BlastRadiusAffectedNode): string {\n  const tag = n.edgeProvenance === Provenance.STALE ? ' [STALE — last seen too long ago]' : ''\n  return `  • ${n.nodeId} (distance ${n.distance}, ${n.edgeProvenance})${tag}`\n}\n\ninterface EdgesResponse {\n  inbound: GraphEdge[]\n  outbound: GraphEdge[]\n}\n\nexport interface DependenciesInput {\n  nodeId: string\n  // BFS depth. Default 3; max 10. Direct-only consumers pass 1.\n  depth?: number\n  project?: string\n}\n\n// Transitive get_dependencies (issue #144). Calls the core endpoint\n// /graph/dependencies/:nodeId?depth=N which BFS-walks outbound. The output\n// groups results by hop so direct dependencies stand out from transitives —\n// agents asked \"what does X depend on?\" usually want the direct list with\n// transitives as context.\nexport async function getDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  const depth = input.depth ?? 3\n  const path = projectPath(\n    input.project,\n    `/graph/dependencies/${encodeURIComponent(input.nodeId)}?depth=${depth}`,\n  )\n\n  return withMissingNodeFallback(async () => {\n    const result = await client.get<TransitiveDependenciesResult>(path)\n    if (result.total === 0) {\n      return formatEmptyResponse(\n        depth === 1\n          ? `${input.nodeId} has no direct dependencies in the graph.`\n          : `${input.nodeId} has no dependencies (BFS to depth ${depth}).`,\n      )\n    }\n    // Group by distance so the structured block reads as concentric rings.\n    const byDistance = new Map<number, typeof result.dependencies>()\n    for (const dep of result.dependencies) {\n      const ring = byDistance.get(dep.distance) ?? []\n      ring.push(dep)\n      byDistance.set(dep.distance, ring)\n    }\n    const blockLines: string[] = []\n    for (const distance of [...byDistance.keys()].sort((a, b) => a - b)) {\n      const label = distance === 1 ? 'Direct (distance 1)' : `Distance ${distance}`\n      blockLines.push(`${label}:`)\n      for (const dep of byDistance.get(distance)!) {\n        blockLines.push(`  • ${dep.nodeId} — ${dep.edgeType} (${dep.provenance})`)\n      }\n    }\n    const provenances = [...new Set(result.dependencies.map((d) => d.provenance))]\n    const directCount = byDistance.get(1)?.length ?? 0\n    const summary =\n      depth === 1\n        ? `${input.nodeId} has ${directCount} direct dependenc${directCount === 1 ? 'y' : 'ies'}.`\n        : `${input.nodeId} has ${result.total} dependenc${result.total === 1 ? 'y' : 'ies'} reachable to depth ${depth} (${directCount} direct).`\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      provenance: provenances,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport async function getObservedDependencies(\n  client: HttpClient,\n  input: DependenciesInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const edges = await client.get<EdgesResponse>(\n      projectPath(input.project, `/graph/edges/${encodeURIComponent(input.nodeId)}`),\n    )\n    const observed = edges.outbound.filter((e) => e.provenance === Provenance.OBSERVED)\n    if (observed.length === 0) {\n      const hasExtracted = edges.outbound.some((e) => e.provenance === Provenance.EXTRACTED)\n      const note = hasExtracted\n        ? ' Static (EXTRACTED) dependencies exist but no runtime traffic has been seen — is OTel running?'\n        : ''\n      return formatEmptyResponse(`No OBSERVED dependencies for ${input.nodeId}.${note}`)\n    }\n    const blockLines = observed.map((e) => `  • ${e.target} — ${e.type}${edgeMeta(e)}`)\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${observed.length} runtime dependenc${observed.length === 1 ? 'y' : 'ies'} confirmed by OTel.`,\n      block: blockLines.join('\\n'),\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nfunction edgeMeta(e: GraphEdge): string {\n  const bits: string[] = []\n  if (e.signal) {\n    // Prefer the runtime signal numbers — \"saw 1,247 calls, 3 errors\" reads\n    // better than a derived 0.94 confidence.\n    bits.push(`spans=${e.signal.spanCount}`)\n    if (e.signal.errorCount > 0) bits.push(`errors=${e.signal.errorCount}`)\n    if (e.signal.lastObservedAgeMs !== undefined) {\n      bits.push(`age=${formatDuration(e.signal.lastObservedAgeMs)}`)\n    }\n  } else if (e.callCount !== undefined) {\n    bits.push(`callCount=${e.callCount}`)\n  }\n  if (e.lastObserved) bits.push(`lastObserved=${e.lastObserved}`)\n  if (e.confidence !== undefined) bits.push(`confidence=${e.confidence}`)\n  return bits.length ? ` [${bits.join(', ')}]` : ''\n}\n\nfunction formatDuration(ms: number): string {\n  if (ms < 1000) return `${Math.round(ms)}ms`\n  const s = Math.round(ms / 1000)\n  if (s < 60) return `${s}s`\n  const m = Math.round(s / 60)\n  if (m < 60) return `${m}m`\n  const h = Math.round(m / 60)\n  if (h < 48) return `${h}h`\n  return `${Math.round(h / 24)}d`\n}\n\nexport interface IncidentHistoryInput {\n  nodeId: string\n  limit?: number\n  project?: string\n}\n\nexport async function getIncidentHistory(\n  client: HttpClient,\n  input: IncidentHistoryInput,\n): Promise<ToolResponse> {\n  return withMissingNodeFallback(async () => {\n    const body = await client.get<{ count: number; total: number; events: ErrorEvent[] }>(\n      projectPath(input.project, `/incidents/${encodeURIComponent(input.nodeId)}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(`No incidents recorded against ${input.nodeId}.`)\n    }\n    // ndjson order is append-time = oldest first. Reverse so the most recent\n    // event leads, then trim to the requested limit.\n    const ordered = [...events].reverse().slice(0, input.limit ?? 20)\n    const blockLines: string[] = []\n    for (const ev of ordered) {\n      blockLines.push(`  ${ev.timestamp} — ${ev.service}: ${ev.errorMessage}`)\n      blockLines.push(`    trace=${ev.traceId} span=${ev.spanId}`)\n    }\n    return formatToolResponse({\n      summary: `${input.nodeId} has ${body.total} recorded incident${body.total === 1 ? '' : 's'}; showing the ${ordered.length} most recent.`,\n      block: blockLines.join('\\n'),\n      // ErrorEvents are observation records, not graph edges — provenance is\n      // OBSERVED by definition (the OTel span happened).\n      provenance: Provenance.OBSERVED,\n    })\n  }, `Node ${input.nodeId} not found in the graph.`)\n}\n\nexport interface SemanticSearchInput {\n  query: string\n  project?: string\n}\n\ninterface SearchResponse {\n  query: string\n  provider?: 'ollama' | 'transformers' | 'substring'\n  matches: (GraphNode & { score?: number })[]\n}\n\nexport async function semanticSearch(\n  client: HttpClient,\n  input: SemanticSearchInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<SearchResponse>(\n      projectPath(input.project, `/search?q=${encodeURIComponent(input.query)}`),\n    )\n    if (result.matches.length === 0) {\n      return formatEmptyResponse(`No matches for \"${input.query}\".`)\n    }\n    const provider = result.provider ?? 'substring'\n    const blockLines: string[] = []\n    let topScore: number | undefined\n    for (const n of result.matches) {\n      // Embedding tiers attach a cosine score in [0,1]; substring fallback\n      // doesn't, so we elide the score when it's the placeholder 1.\n      const score = provider !== 'substring' && typeof n.score === 'number' ? n.score : undefined\n      const scoreBit = score !== undefined ? ` [score=${score.toFixed(2)}]` : ''\n      if (score !== undefined && (topScore === undefined || score > topScore)) topScore = score\n      blockLines.push(\n        `  • ${n.id} (${n.type}) — ${(n as { name?: string }).name ?? n.id}${scoreBit}`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Found ${result.matches.length} match${result.matches.length === 1 ? '' : 'es'} for \"${input.query}\" via ${provider} provider.`,\n      block: blockLines.join('\\n'),\n      // Top similarity score doubles as a \"how confident is the embedder\n      // about the best match\" signal. Substring provider returns no score —\n      // the footer shows n/a in that case.\n      confidence: topScore,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface GraphDiffInput {\n  againstSnapshot: string\n  project?: string\n}\n\ninterface GraphDiffResponse {\n  base: { exportedAt?: string }\n  current: { exportedAt: string }\n  added: { nodes: GraphNode[]; edges: GraphEdge[] }\n  removed: { nodes: GraphNode[]; edges: GraphEdge[] }\n  changed: {\n    nodes: { id: string; before: GraphNode; after: GraphNode }[]\n    edges: { id: string; before: GraphEdge; after: GraphEdge }[]\n  }\n}\n\nexport async function getGraphDiff(\n  client: HttpClient,\n  input: GraphDiffInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<GraphDiffResponse>(\n      projectPath(\n        input.project,\n        `/graph/diff?against=${encodeURIComponent(input.againstSnapshot)}`,\n      ),\n    )\n    const total =\n      result.added.nodes.length +\n      result.added.edges.length +\n      result.removed.nodes.length +\n      result.removed.edges.length +\n      result.changed.nodes.length +\n      result.changed.edges.length\n    const baseLabel = result.base.exportedAt ?? 'unknown'\n    if (total === 0) {\n      return formatEmptyResponse(\n        `No differences between the current graph and ${input.againstSnapshot} (base exportedAt=${baseLabel}).`,\n      )\n    }\n    const blockLines: string[] = [\n      `  base exportedAt:    ${baseLabel}`,\n      `  current exportedAt: ${result.current.exportedAt}`,\n      '',\n    ]\n    if (result.added.nodes.length || result.added.edges.length) {\n      blockLines.push('Added:')\n      for (const n of result.added.nodes) blockLines.push(`  + node ${n.id} (${n.type})`)\n      for (const e of result.added.edges)\n        blockLines.push(`  + edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.removed.nodes.length || result.removed.edges.length) {\n      blockLines.push('Removed:')\n      for (const n of result.removed.nodes) blockLines.push(`  - node ${n.id} (${n.type})`)\n      for (const e of result.removed.edges)\n        blockLines.push(`  - edge ${e.id} — ${e.source} -> ${e.target} (${e.type}, ${e.provenance})`)\n      blockLines.push('')\n    }\n    if (result.changed.nodes.length || result.changed.edges.length) {\n      blockLines.push('Changed:')\n      for (const c of result.changed.nodes) {\n        blockLines.push(`  ~ node ${c.id} — ${summariseAttrDiff(c.before, c.after)}`)\n      }\n      for (const c of result.changed.edges) {\n        const provBit =\n          c.before.provenance !== c.after.provenance\n            ? `provenance ${c.before.provenance} → ${c.after.provenance}`\n            : summariseAttrDiff(c.before, c.after)\n        blockLines.push(`  ~ edge ${c.id} — ${provBit}`)\n      }\n    }\n    return formatToolResponse({\n      summary: `Diff against ${input.againstSnapshot}: ${total} change${total === 1 ? '' : 's'} between the snapshot and the live graph.`,\n      block: blockLines.join('\\n').trimEnd(),\n      // Diff results don't have a per-result provenance — the diff spans\n      // every edge type and provenance kind. Footer shows n/a.\n    })\n  } catch (err) {\n    if (err instanceof HttpError && err.status === 400) {\n      return formatErrorResponse(\n        `Could not load snapshot ${input.againstSnapshot}: ${err.message}`,\n      )\n    }\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nfunction summariseAttrDiff(\n  before: Record<string, unknown>,\n  after: Record<string, unknown>,\n): string {\n  const keys = new Set([...Object.keys(before), ...Object.keys(after)])\n  const changed: string[] = []\n  for (const k of keys) {\n    if (JSON.stringify(before[k]) !== JSON.stringify(after[k])) changed.push(k)\n  }\n  return changed.length === 0\n    ? 'attributes differ'\n    : `fields changed: ${changed.sort().join(', ')}`\n}\n\nexport interface RecentStaleEdgesInput {\n  limit?: number\n  edgeType?: string\n  project?: string\n}\n\ninterface StaleEventResponse {\n  edgeId: string\n  source: string\n  target: string\n  edgeType: string\n  thresholdMs: number\n  ageMs: number\n  lastObserved: string\n  transitionedAt: string\n}\n\nexport async function getRecentStaleEdges(\n  client: HttpClient,\n  input: RecentStaleEdgesInput,\n): Promise<ToolResponse> {\n  const params = new URLSearchParams()\n  if (input.limit !== undefined) params.set('limit', String(input.limit))\n  if (input.edgeType) params.set('edgeType', input.edgeType)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n\n  try {\n    const body = await client.get<{ count: number; total: number; events: StaleEventResponse[] }>(\n      projectPath(input.project, `/stale-events${qs}`),\n    )\n    const events = body.events\n    if (events.length === 0) {\n      return formatEmptyResponse(\n        input.edgeType\n          ? `No stale ${input.edgeType} edges recorded.`\n          : 'No stale-edge transitions recorded yet.',\n      )\n    }\n    const blockLines = events.map(\n      (e) =>\n        `  ${e.transitionedAt} — ${e.source} -[${e.edgeType}]-> ${e.target}` +\n        ` (last seen ${e.lastObserved}, threshold ${formatDuration(e.thresholdMs)})`,\n    )\n    return formatToolResponse({\n      summary: `${events.length} stale-edge transition${events.length === 1 ? '' : 's'} recorded${input.edgeType ? ` for ${input.edgeType}` : ''}.`,\n      block: blockLines.join('\\n'),\n      // STALE by definition — every event is a transition into STALE.\n      provenance: Provenance.STALE,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface CheckPoliciesInput {\n  // 'all' (default) returns every current violation. 'unresolved' is reserved\n  // for future resolution tracking — for the MVP it behaves the same as 'all'.\n  // { policyId } narrows to violations of one named policy.\n  scope?: 'all' | 'unresolved' | { policyId: string }\n  // When provided, dry-run evaluation: return violations that *would* result\n  // if the action were applied. Without it, return current violations.\n  hypotheticalAction?: HypotheticalAction\n  project?: string\n}\n\ninterface PoliciesCheckResponse {\n  allowed: boolean\n  hypotheticalAction?: HypotheticalAction\n  violations: PolicyViolation[]\n}\n\n// check_policies — single MCP tool covering both state-read and dry-run modes\n// per ADR-045. The contract explicitly rejects the audit's two-tool split\n// (evaluate_policy + get_policy_violations); both modes route through here.\nexport async function checkPolicies(\n  client: HttpClient,\n  input: CheckPoliciesInput,\n): Promise<ToolResponse> {\n  try {\n    let violations: PolicyViolation[]\n    let allowed = true\n    let hypothetical: HypotheticalAction | undefined\n\n    if (input.hypotheticalAction) {\n      // Dry-run via POST /policies/check.\n      const body = await postJson<PoliciesCheckResponse>(\n        client,\n        projectPath(input.project, '/policies/check'),\n        { hypotheticalAction: input.hypotheticalAction },\n      )\n      violations = body.violations\n      allowed = body.allowed\n      hypothetical = body.hypotheticalAction\n    } else {\n      // State read via GET /policies/violations. Optional scope filters via\n      // ?policyId=, severity isn't surfaced in the tool input today.\n      const qsParams = new URLSearchParams()\n      if (typeof input.scope === 'object' && 'policyId' in input.scope) {\n        qsParams.set('policyId', input.scope.policyId)\n      }\n      const qs = qsParams.size > 0 ? `?${qsParams.toString()}` : ''\n      const body = await client.get<{ violations: PolicyViolation[] }>(\n        projectPath(input.project, `/policies/violations${qs}`),\n      )\n      violations = body.violations\n      allowed = violations.every((v) => v.onViolation !== 'block')\n    }\n\n    if (violations.length === 0) {\n      return formatEmptyResponse(\n        hypothetical\n          ? `No violations would result from the hypothetical action (${hypothetical.kind}).`\n          : 'No policy violations recorded.',\n      )\n    }\n\n    const blockCount = violations.filter((v) => v.onViolation === 'block').length\n    const summaryParts: string[] = []\n    if (hypothetical) {\n      summaryParts.push(\n        `Hypothetical ${hypothetical.kind} would surface ${violations.length} violation${violations.length === 1 ? '' : 's'}`,\n      )\n    } else {\n      summaryParts.push(\n        `${violations.length} policy violation${violations.length === 1 ? '' : 's'} currently recorded`,\n      )\n    }\n    if (blockCount > 0) {\n      summaryParts.push(`${blockCount} of which block`)\n    }\n    if (!allowed && hypothetical) {\n      summaryParts.push('action denied')\n    }\n    const summary = summaryParts.join('; ') + '.'\n\n    const blockLines = violations.map((v) => {\n      const subject = v.subject.nodeId ?? v.subject.edgeId ?? v.subject.path?.[0] ?? '(global)'\n      return `  • [${v.severity}/${v.onViolation}] ${v.policyName}: ${v.message} — ${subject}`\n    })\n    const severities = [...new Set(violations.map((v) => v.severity))]\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      // Confidence: hypothetical results inherit a 0.7 cap (the engine\n      // can't fully simulate every action shape in MVP); confirmed\n      // violations report 1.00 since the engine ran against current state.\n      confidence: hypothetical ? 0.7 : 1,\n      provenance: severities.join(' '),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\n// ──────────────────────────────────────────────────────────────────────────\n// get_divergences (ADR-060) — the thesis surface\n// ──────────────────────────────────────────────────────────────────────────\n\nexport interface DivergencesInput {\n  type?: ReadonlyArray<DivergenceType>\n  minConfidence?: number\n  node?: string\n  project?: string\n}\n\nfunction buildDivergencesPath(input: DivergencesInput): string {\n  const params = new URLSearchParams()\n  if (input.type && input.type.length > 0) params.set('type', input.type.join(','))\n  if (input.minConfidence !== undefined) {\n    params.set('minConfidence', String(input.minConfidence))\n  }\n  if (input.node) params.set('node', input.node)\n  const qs = params.size > 0 ? `?${params.toString()}` : ''\n  return projectPath(input.project, `/graph/divergences${qs}`)\n}\n\nfunction formatDivergenceLine(d: Divergence): string {\n  switch (d.type) {\n    case 'missing-observed':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'missing-extracted':\n      return `  • [${d.type}] ${d.source} → ${d.target} (${d.edgeType}) — confidence ${d.confidence.toFixed(2)}`\n    case 'version-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared ${d.extractedVersion}, observed engine ${d.observedVersion} (${d.compatibility})`\n    case 'host-mismatch':\n      return `  • [${d.type}] ${d.source} → ${d.target} — declared host ${d.extractedHost}, observed host ${d.observedHost}`\n    case 'compat-violation':\n      return `  • [${d.type}] ${d.source} → ${d.target} — ${d.rule.kind}${d.rule.package ? ` (${d.rule.package})` : ''}`\n  }\n}\n\nexport async function getDivergences(\n  client: HttpClient,\n  input: DivergencesInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<DivergenceResult>(buildDivergencesPath(input))\n    if (result.totalAffected === 0) {\n      return formatEmptyResponse(\n        'No divergences found between the declared (EXTRACTED) and observed (OBSERVED) views of the graph.',\n      )\n    }\n    // Sorted by confidence descending already; first entry is the headline.\n    const headline = result.divergences[0]!\n    const summary =\n      `Found ${result.totalAffected} divergence${result.totalAffected === 1 ? '' : 's'} between code and production. ` +\n      `Highest-confidence: ${headline.type} on ${headline.source} → ${headline.target}. ${headline.reason}`\n    const blockLines: string[] = []\n    for (const d of result.divergences) {\n      blockLines.push(formatDivergenceLine(d))\n      blockLines.push(`    reason: ${d.reason}`)\n      blockLines.push(`    recommendation: ${d.recommendation}`)\n    }\n    const maxConfidence = result.divergences.reduce(\n      (m, d) => Math.max(m, d.confidence),\n      0,\n    )\n    return formatToolResponse({\n      summary,\n      block: blockLines.join('\\n'),\n      confidence: maxConfidence,\n      // Composite provenance — divergences sit between EXTRACTED and\n      // OBSERVED by construction; that's what makes them divergences.\n      provenance: 'composite (EXTRACTED + OBSERVED)',\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nasync function postJson<T>(\n  client: HttpClient,\n  path: string,\n  body: unknown,\n): Promise<T> {\n  // The base HttpClient interface only exposes get(). For POST we need to\n  // reach into the underlying transport. Most callers pass the client built\n  // by createHttpClient which has post; types are kept minimal so test\n  // stubs don't have to implement post unless the tool needs it.\n  const c = client as HttpClient & { post?: <U>(p: string, b: unknown) => Promise<U> }\n  if (typeof c.post !== 'function') {\n    throw new Error('HttpClient does not support POST — required for check_policies dry-run')\n  }\n  return c.post<T>(path, body)\n}\n\n// ── /neat extend tools (ADR-081, ADR-086) ────────────────────────────────\n\nexport interface ListUninstrumentedInput {\n  project?: string\n}\n\ninterface LibraryCoverageResult {\n  library: string\n  coverage: string\n  installedVersion?: string\n  instrumentation_package?: string\n  package_version?: string\n  registration?: string\n  notes?: string\n}\n\nexport async function neatListUninstrumented(\n  client: HttpClient,\n  input: ListUninstrumentedInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await client.get<{ libraries: LibraryCoverageResult[] }>(\n      projectPath(input.project, '/extend/list-uninstrumented'),\n    )\n    const libs = result.libraries\n    if (libs.length === 0) {\n      return formatEmptyResponse(\n        'All detected libraries are covered by the auto-instrumentations bundle or the HTTP fallback. No extension needed.',\n      )\n    }\n    const blockLines = libs.map((l) => {\n      const pkgBit = l.instrumentation_package ? ` → ${l.instrumentation_package}@${l.package_version ?? '*'}` : ' → no registry entry'\n      return `  • ${l.library} [${l.coverage}]${pkgBit}${l.notes ? ` — ${l.notes}` : ''}`\n    })\n    return formatToolResponse({\n      summary: `${libs.length} librar${libs.length === 1 ? 'y needs' : 'ies need'} instrumentation beyond the auto-instrumentations bundle.`,\n      block: blockLines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface LookupInstrumentationInput {\n  library: string\n  installedVersion?: string\n  project?: string\n}\n\nexport async function neatLookupInstrumentation(\n  client: HttpClient,\n  input: LookupInstrumentationInput,\n): Promise<ToolResponse> {\n  const qs = input.installedVersion ? `?library=${encodeURIComponent(input.library)}&version=${encodeURIComponent(input.installedVersion)}` : `?library=${encodeURIComponent(input.library)}`\n  try {\n    const result = await client.get<LibraryCoverageResult>(\n      projectPath(input.project, `/extend/lookup${qs}`),\n    )\n    const lines = [\n      `  coverage: ${result.coverage}`,\n      ...(result.instrumentation_package ? [`  instrumentation_package: ${result.instrumentation_package}@${result.package_version ?? '*'}`] : []),\n      ...(result.registration ? [`  registration: ${result.registration}`] : []),\n      ...(result.notes ? 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'' : 's'} would be touched. No changes made.`,\n      block: lines.join('\\n'),\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n\nexport interface RollbackExtensionInput {\n  library: string\n  project?: string\n}\n\nexport async function neatRollbackExtension(\n  client: HttpClient,\n  input: RollbackExtensionInput,\n): Promise<ToolResponse> {\n  try {\n    const result = await postJson<{ undone: boolean; message: string }>(\n      client,\n      projectPath(input.project, '/extend/rollback'),\n      { library: input.library },\n    )\n    if (!result.undone) {\n      return formatEmptyResponse(\n        `No prior apply found for ${input.library} — nothing to roll back.`,\n      )\n    }\n    return formatToolResponse({\n      summary: `Rolled back instrumentation for ${input.library}. ${result.message}. Run your package manager install to sync the lockfile.`,\n      block: `  result: ${result.message}`,\n    })\n  } catch (err) {\n    return formatErrorResponse(`Error talking to neat-core: ${(err as Error).message}`)\n  }\n}\n","// Standardized three-part response format for every MCP tool (ADR-039,\n// issue #143). Output shape:\n//\n//   {summary — NL paragraph: what was found, why it matters}\n//\n//   {block — typed payload, formatted}\n//\n//   confidence: 0.94 · provenance: OBSERVED\n//\n// Empty result → footer reads \"confidence: n/a · provenance: n/a\". Every tool\n// in packages/mcp/src/tools.ts routes through this helper so consumers get a\n// consistent shape — agents can pattern-match on the footer to know how much\n// to trust the answer.\n\nexport interface ToolResponse {\n  [x: string]: unknown\n  content: { type: 'text'; text: string }[]\n  isError?: boolean\n}\n\nexport interface FormatToolResponseInput {\n  // NL paragraph. One or two sentences. What was found and why it matters.\n  summary: string\n  // Structured block. The formatted typed payload — usually a bullet list,\n  // sometimes a multi-section breakdown. May be empty when the summary\n  // already conveys everything.\n  block?: string\n  // Per-result confidence in [0, 1]. Undefined → footer reads \"n/a\".\n  confidence?: number\n  // Per-result provenance. Single value, or an array if the result spans\n  // mixed provenances (e.g. a path of OBSERVED + EXTRACTED edges). Undefined\n  // → footer reads \"n/a\".\n  provenance?: string | string[]\n  // Set on transport / 5xx errors. Routes through ToolResponse.isError so\n  // MCP clients can surface a non-\"normal\" return.\n  isError?: boolean\n}\n\nfunction formatFooter(\n  confidence: number | undefined,\n  provenance: string | string[] | undefined,\n): string {\n  const c = confidence === undefined ? 'n/a' : confidence.toFixed(2)\n  const p =\n    provenance === undefined\n      ? 'n/a'\n      : Array.isArray(provenance)\n        ? [...new Set(provenance)].join(', ')\n        : provenance\n  return `confidence: ${c} · provenance: ${p}`\n}\n\nexport function formatToolResponse(input: FormatToolResponseInput): ToolResponse {\n  const sections: string[] = [input.summary.trim()]\n  if (input.block && input.block.trim().length > 0) {\n    sections.push(input.block.trimEnd())\n  }\n  sections.push(formatFooter(input.confidence, input.provenance))\n  const text = sections.join('\\n\\n')\n  return {\n    content: [{ type: 'text', text }],\n    ...(input.isError ? { isError: true } : {}),\n  }\n}\n\n// Convenience for the \"node not found / empty graph\" path. 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@neat.is/mcp",
-  "version": "0.4.16",
+  "version": "0.4.18",
   "description": "NEAT MCP server: exposes graph queries to AI agents over stdio",
   "license": "BUSL-1.1",
   "homepage": "https://neat.is",
@@ -44,7 +44,7 @@
   },
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.0.0",
-    "@neat.is/types": "^0.4.16",
+    "@neat.is/types": "^0.4.18",
     "zod": "^3.23.8"
   },
   "devDependencies": {