@ncukondo/slide-generation 0.1.0

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/parser.ts","../src/core/transformer.ts","../src/core/renderer.ts","../src/core/pipeline.ts","../src/templates/engine.ts","../src/templates/loader.ts","../src/templates/validators.ts","../src/icons/registry.ts","../src/icons/schema.ts","../src/icons/resolver.ts","../src/references/manager.ts","../src/references/extractor.ts","../src/references/formatter.ts","../src/index.ts"],"sourcesContent":["import { z } from 'zod';\nimport { parse as parseYaml } from 'yaml';\nimport { readFile } from 'fs/promises';\n\n// References config schema\nconst referencesConfigSchema = z.object({\n  enabled: z.boolean().default(true),\n  style: z.string().default('author-year-pmid'),\n});\n\n// Meta schema\nconst metaSchema = z.object({\n  title: z.string(),\n  author: z.string().optional(),\n  date: z.string().optional(),\n  theme: z.string().default('default'),\n  references: referencesConfigSchema.optional(),\n});\n\n// Slide schema\nconst slideSchema = z.object({\n  template: z.string(),\n  content: z.record(z.unknown()).default({}),\n  class: z.string().optional(),\n  notes: z.string().optional(),\n  raw: z.string().optional(),\n});\n\n// Presentation schema\nexport const presentationSchema = z.object({\n  meta: metaSchema,\n  slides: z.array(slideSchema).default([]),\n});\n\nexport type PresentationMeta = z.infer<typeof metaSchema>;\nexport type ParsedSlide = z.infer<typeof slideSchema>;\nexport type ParsedPresentation = z.infer<typeof presentationSchema>;\n\nexport class ParseError extends Error {\n  constructor(\n    message: string,\n    public details?: unknown\n  ) {\n    super(message);\n    this.name = 'ParseError';\n  }\n}\n\nexport class ValidationError extends Error {\n  constructor(\n    message: string,\n    public details?: unknown\n  ) {\n    super(message);\n    this.name = 'ValidationError';\n  }\n}\n\nexport class Parser {\n  parse(yamlContent: string): ParsedPresentation {\n    let rawData: unknown;\n\n    try {\n      rawData = parseYaml(yamlContent);\n    } catch (error) {\n      throw new ParseError('Failed to parse YAML', error);\n    }\n\n    const result = presentationSchema.safeParse(rawData);\n\n    if (!result.success) {\n      throw new ValidationError(\n        'Schema validation failed',\n        result.error.format()\n      );\n    }\n\n    return result.data;\n  }\n\n  async parseFile(filePath: string): Promise<ParsedPresentation> {\n    let content: string;\n\n    try {\n      content = await readFile(filePath, 'utf-8');\n    } catch (error) {\n      if ((error as NodeJS.ErrnoException).code === 'ENOENT') {\n        throw new ParseError(`File not found: ${filePath}`);\n      }\n      throw new ParseError(`Failed to read file: ${filePath}`, error);\n    }\n\n    return this.parse(content);\n  }\n}\n","import type { TemplateEngine, IconsHelper, RefsHelper } from '../templates/engine';\nimport type { TemplateLoader } from '../templates/loader';\nimport type { IconResolver } from '../icons/resolver';\nimport type { CitationFormatter } from '../references/formatter';\nimport type { ParsedSlide, ParsedPresentation, PresentationMeta } from './parser';\n\n// Placeholder patterns for async resolution\nconst ICON_PLACEHOLDER_PREFIX = '___ICON_PLACEHOLDER_';\nconst ICON_PLACEHOLDER_SUFFIX = '___';\nconst REFS_CITE_PLACEHOLDER_PREFIX = '___REFS_CITE_PLACEHOLDER_';\nconst REFS_CITE_PLACEHOLDER_SUFFIX = '___';\nconst REFS_EXPAND_PLACEHOLDER_PREFIX = '___REFS_EXPAND_PLACEHOLDER_';\nconst REFS_EXPAND_PLACEHOLDER_SUFFIX = '___';\n\n/**\n * Context passed to each slide transformation\n */\nexport interface TransformContext {\n  meta: PresentationMeta;\n  slideIndex: number;\n  totalSlides: number;\n}\n\n/**\n * Error thrown when transformation fails\n */\nexport class TransformError extends Error {\n  constructor(\n    message: string,\n    public slide?: ParsedSlide,\n    public details?: unknown\n  ) {\n    super(message);\n    this.name = 'TransformError';\n  }\n}\n\n/**\n * Pending async operations collected during template rendering\n */\ninterface PendingOperations {\n  icons: Map<string, { name: string; options: Record<string, unknown> | undefined }>;\n  cites: Map<string, string>;\n  expands: Map<string, string>;\n}\n\n/**\n * Transformer applies templates to slides and generates HTML content\n */\nexport class Transformer {\n  constructor(\n    private templateEngine: TemplateEngine,\n    private templateLoader: TemplateLoader,\n    private iconResolver: IconResolver,\n    private citationFormatter: CitationFormatter\n  ) {}\n\n  /**\n   * Transform a single slide using its template\n   */\n  async transform(slide: ParsedSlide, context: TransformContext): Promise<string> {\n    // Handle raw template - return raw content directly\n    if (slide.template === 'raw') {\n      return slide.raw ?? '';\n    }\n\n    // Get the template definition\n    const template = this.templateLoader.get(slide.template);\n    if (!template) {\n      throw new TransformError(\n        `Template \"${slide.template}\" not found`,\n        slide\n      );\n    }\n\n    // Validate content against template schema\n    const validationResult = this.templateLoader.validateContent(\n      slide.template,\n      slide.content\n    );\n    if (!validationResult.valid) {\n      throw new TransformError(\n        `Slide content validation failed: ${validationResult.errors?.join(', ')}`,\n        slide,\n        validationResult.errors\n      );\n    }\n\n    // Build template context with helpers that use placeholders\n    const pending: PendingOperations = {\n      icons: new Map(),\n      cites: new Map(),\n      expands: new Map(),\n    };\n    const templateContext = this.buildTemplateContext(slide, context, pending);\n\n    // Render the template (synchronous, with placeholders)\n    let output = this.templateEngine.render(template.output, templateContext);\n\n    // Resolve all async operations and replace placeholders\n    output = await this.resolvePlaceholders(output, pending);\n\n    // Add CSS class directive if specified\n    if (slide.class) {\n      output = `<!-- _class: ${slide.class} -->\\n${output}`;\n    }\n\n    return output.trim();\n  }\n\n  /**\n   * Transform all slides in a presentation\n   */\n  async transformAll(presentation: ParsedPresentation): Promise<string[]> {\n    const results: string[] = [];\n    const totalSlides = presentation.slides.length;\n\n    for (let i = 0; i < presentation.slides.length; i++) {\n      const slide = presentation.slides[i]!;\n      const context: TransformContext = {\n        meta: presentation.meta,\n        slideIndex: i,\n        totalSlides,\n      };\n\n      const transformed = await this.transform(slide, context);\n      results.push(transformed);\n    }\n\n    return results;\n  }\n\n  /**\n   * Build the full template context with helpers that collect async operations\n   */\n  private buildTemplateContext(\n    slide: ParsedSlide,\n    context: TransformContext,\n    pending: PendingOperations\n  ): Record<string, unknown> {\n    let iconCounter = 0;\n    let citeCounter = 0;\n    let expandCounter = 0;\n\n    // Create icons helper that returns placeholders\n    const icons: IconsHelper = {\n      render: (name: string, options?: Record<string, unknown>) => {\n        const id = `${iconCounter++}`;\n        const placeholder = `${ICON_PLACEHOLDER_PREFIX}${id}${ICON_PLACEHOLDER_SUFFIX}`;\n        pending.icons.set(id, { name, options });\n        return placeholder;\n      },\n    };\n\n    // Create refs helper that returns placeholders\n    const refs: RefsHelper = {\n      cite: (id: string) => {\n        const counterId = `${citeCounter++}`;\n        const placeholder = `${REFS_CITE_PLACEHOLDER_PREFIX}${counterId}${REFS_CITE_PLACEHOLDER_SUFFIX}`;\n        pending.cites.set(counterId, id);\n        return placeholder;\n      },\n      expand: (text: string) => {\n        const counterId = `${expandCounter++}`;\n        const placeholder = `${REFS_EXPAND_PLACEHOLDER_PREFIX}${counterId}${REFS_EXPAND_PLACEHOLDER_SUFFIX}`;\n        pending.expands.set(counterId, text);\n        return placeholder;\n      },\n    };\n\n    return {\n      content: slide.content,\n      meta: {\n        title: context.meta.title,\n        author: context.meta.author,\n        theme: context.meta.theme,\n      },\n      slide: {\n        index: context.slideIndex,\n        total: context.totalSlides,\n      },\n      icons,\n      refs,\n    };\n  }\n\n  /**\n   * Resolve all placeholders by executing async operations\n   */\n  private async resolvePlaceholders(\n    output: string,\n    pending: PendingOperations\n  ): Promise<string> {\n    // Resolve icons\n    const iconResults = new Map<string, string>();\n    for (const [id, { name, options }] of pending.icons) {\n      const rendered = await this.iconResolver.render(\n        name,\n        options as { size?: string; color?: string; class?: string } | undefined\n      );\n      iconResults.set(id, rendered);\n    }\n\n    // Resolve citations\n    const citeResults = new Map<string, string>();\n    for (const [counterId, id] of pending.cites) {\n      const formatted = await this.citationFormatter.formatInline(id);\n      citeResults.set(counterId, formatted);\n    }\n\n    // Resolve citation expansions\n    const expandResults = new Map<string, string>();\n    for (const [counterId, text] of pending.expands) {\n      const expanded = await this.citationFormatter.expandCitations(text);\n      expandResults.set(counterId, expanded);\n    }\n\n    // Replace all placeholders\n    let result = output;\n\n    for (const [id, rendered] of iconResults) {\n      const placeholder = `${ICON_PLACEHOLDER_PREFIX}${id}${ICON_PLACEHOLDER_SUFFIX}`;\n      result = result.replace(placeholder, rendered);\n    }\n\n    for (const [counterId, formatted] of citeResults) {\n      const placeholder = `${REFS_CITE_PLACEHOLDER_PREFIX}${counterId}${REFS_CITE_PLACEHOLDER_SUFFIX}`;\n      result = result.replace(placeholder, formatted);\n    }\n\n    for (const [counterId, expanded] of expandResults) {\n      const placeholder = `${REFS_EXPAND_PLACEHOLDER_PREFIX}${counterId}${REFS_EXPAND_PLACEHOLDER_SUFFIX}`;\n      result = result.replace(placeholder, expanded);\n    }\n\n    return result;\n  }\n}\n","import type { PresentationMeta } from './parser';\n\n/**\n * Options for rendering the final Marp markdown\n */\nexport interface RenderOptions {\n  /** Include theme in front matter (default: true) */\n  includeTheme?: boolean;\n  /** Speaker notes for each slide (indexed by slide position) */\n  notes?: (string | undefined)[];\n  /** Additional front matter properties */\n  additionalFrontMatter?: Record<string, unknown>;\n}\n\n/**\n * Renderer combines transformed slides into Marp-compatible Markdown\n */\nexport class Renderer {\n  /**\n   * Render slides and metadata into final Marp markdown\n   */\n  render(\n    slides: string[],\n    meta: PresentationMeta,\n    options?: RenderOptions\n  ): string {\n    const frontMatter = this.renderFrontMatter(meta, options);\n    const slidesContent = this.joinSlides(slides, options?.notes);\n\n    if (slides.length === 0) {\n      return frontMatter;\n    }\n\n    return `${frontMatter}\\n\\n${slidesContent}`;\n  }\n\n  /**\n   * Render the YAML front matter block\n   */\n  private renderFrontMatter(\n    meta: PresentationMeta,\n    options?: RenderOptions\n  ): string {\n    const lines: string[] = ['---', 'marp: true'];\n\n    // Add title\n    lines.push(`title: ${meta.title}`);\n\n    // Add author if present\n    if (meta.author) {\n      lines.push(`author: ${meta.author}`);\n    }\n\n    // Add date if present\n    if (meta.date) {\n      lines.push(`date: ${meta.date}`);\n    }\n\n    // Add theme if enabled (default: true)\n    const includeTheme = options?.includeTheme ?? true;\n    if (includeTheme && meta.theme) {\n      lines.push(`theme: ${meta.theme}`);\n    }\n\n    // Add additional front matter properties\n    if (options?.additionalFrontMatter) {\n      for (const [key, value] of Object.entries(options.additionalFrontMatter)) {\n        lines.push(`${key}: ${this.formatFrontMatterValue(value)}`);\n      }\n    }\n\n    lines.push('---');\n\n    return lines.join('\\n');\n  }\n\n  /**\n   * Format a front matter value for YAML\n   */\n  private formatFrontMatterValue(value: unknown): string {\n    if (typeof value === 'boolean') {\n      return value ? 'true' : 'false';\n    }\n    if (typeof value === 'number') {\n      return String(value);\n    }\n    if (typeof value === 'string') {\n      // Quote if contains special characters\n      if (/[:#[\\]{}|>]/.test(value)) {\n        return `\"${value.replace(/\"/g, '\\\\\"')}\"`;\n      }\n      return value;\n    }\n    return String(value);\n  }\n\n  /**\n   * Join slides with Marp slide separator\n   */\n  private joinSlides(\n    slides: string[],\n    notes?: (string | undefined)[]\n  ): string {\n    const parts: string[] = [];\n\n    for (let i = 0; i < slides.length; i++) {\n      let slideContent = slides[i]!;\n\n      // Add speaker notes if present\n      const note = notes?.[i];\n      if (note && note.trim()) {\n        slideContent = `${slideContent}\\n\\n${this.renderSpeakerNotes(note)}`;\n      }\n\n      parts.push(slideContent);\n    }\n\n    // Join with Marp slide separator (---)\n    return parts.map(slide => `---\\n\\n${slide}`).join('\\n\\n');\n  }\n\n  /**\n   * Render speaker notes as HTML comment\n   */\n  private renderSpeakerNotes(notes: string): string {\n    return `<!--\\n${notes}\\n-->`;\n  }\n}\n","import { writeFile } from 'fs/promises';\nimport { Parser, type ParsedPresentation } from './parser';\nimport { Transformer } from './transformer';\nimport { Renderer, type RenderOptions } from './renderer';\nimport { TemplateEngine } from '../templates/engine';\nimport { TemplateLoader } from '../templates/loader';\nimport { IconRegistryLoader } from '../icons/registry';\nimport { IconResolver } from '../icons/resolver';\nimport { ReferenceManager, type CSLItem } from '../references/manager';\nimport { CitationExtractor } from '../references/extractor';\nimport { CitationFormatter } from '../references/formatter';\nimport type { Config } from '../config/schema';\n\n/**\n * Options for the Pipeline\n */\nexport interface PipelineOptions {\n  /** Custom config path override */\n  configPath?: string;\n  /** Output file path (if not specified, returns string only) */\n  outputPath?: string;\n  /** Enable verbose/progress output */\n  verbose?: boolean;\n}\n\n/**\n * Result of a pipeline run\n */\nexport interface PipelineResult {\n  /** Generated Marp markdown */\n  output: string;\n  /** Citation IDs found in the presentation */\n  citations: string[];\n  /** Warnings generated during processing */\n  warnings: string[];\n  /** Number of slides processed */\n  slideCount: number;\n}\n\n/**\n * Error thrown when pipeline processing fails\n */\nexport class PipelineError extends Error {\n  constructor(\n    message: string,\n    public stage: string,\n    public details?: unknown\n  ) {\n    super(message);\n    this.name = 'PipelineError';\n  }\n}\n\n/**\n * Pipeline orchestrates the full YAML to Marp markdown conversion\n *\n * Stages:\n * 1. Parse Source - Load and validate YAML\n * 2. Collect Citations - Extract citation IDs from all slides\n * 3. Resolve References - Fetch bibliography data\n * 4. Transform Slides - Apply templates and resolve icons/citations\n * 5. Render Output - Generate final Marp markdown\n */\nexport class Pipeline {\n  private parser: Parser;\n  private templateEngine: TemplateEngine;\n  private templateLoader: TemplateLoader;\n  private iconRegistry: IconRegistryLoader;\n  private iconResolver: IconResolver;\n  private referenceManager: ReferenceManager;\n  private citationExtractor: CitationExtractor;\n  private citationFormatter: CitationFormatter;\n  private transformer: Transformer;\n  private renderer: Renderer;\n  private warnings: string[] = [];\n\n  constructor(private config: Config) {\n    // Initialize all components\n    this.parser = new Parser();\n    this.templateEngine = new TemplateEngine();\n    this.templateLoader = new TemplateLoader();\n    this.iconRegistry = new IconRegistryLoader();\n    this.iconResolver = new IconResolver(this.iconRegistry);\n    this.referenceManager = new ReferenceManager(\n      config.references.connection.command\n    );\n    this.citationExtractor = new CitationExtractor();\n    this.citationFormatter = new CitationFormatter(\n      this.referenceManager,\n      {\n        author: {\n          maxAuthors: config.references.format.maxAuthors,\n          etAl: config.references.format.etAl,\n          etAlJa: config.references.format.etAlJa,\n        },\n        inline: {\n          authorSep: config.references.format.authorSep,\n          identifierSep: config.references.format.identifierSep,\n        },\n      }\n    );\n    this.transformer = new Transformer(\n      this.templateEngine,\n      this.templateLoader,\n      this.iconResolver,\n      this.citationFormatter\n    );\n    this.renderer = new Renderer();\n  }\n\n  /**\n   * Run the full conversion pipeline\n   */\n  async run(inputPath: string, options?: PipelineOptions): Promise<string> {\n    this.warnings = [];\n\n    try {\n      // Stage 1: Parse Source\n      const presentation = await this.parseSource(inputPath);\n\n      // Stage 2: Collect Citations\n      const citationIds = this.collectCitations(presentation);\n\n      // Stage 3: Resolve References\n      await this.resolveReferences(citationIds);\n\n      // Stage 4: Transform Slides\n      const transformedSlides = await this.transformSlides(presentation);\n\n      // Stage 5: Render Output\n      const output = this.render(transformedSlides, presentation);\n\n      // Write output file if specified\n      if (options?.outputPath) {\n        await writeFile(options.outputPath, output, 'utf-8');\n      }\n\n      return output;\n    } catch (error) {\n      if (error instanceof PipelineError) {\n        throw error;\n      }\n      throw new PipelineError(\n        error instanceof Error ? error.message : 'Unknown error',\n        'unknown',\n        error\n      );\n    }\n  }\n\n  /**\n   * Run the full pipeline with detailed result\n   */\n  async runWithResult(\n    inputPath: string,\n    options?: PipelineOptions\n  ): Promise<PipelineResult> {\n    this.warnings = [];\n\n    try {\n      // Stage 1: Parse Source\n      const presentation = await this.parseSource(inputPath);\n\n      // Stage 2: Collect Citations\n      const citationIds = this.collectCitations(presentation);\n\n      // Stage 3: Resolve References\n      await this.resolveReferences(citationIds);\n\n      // Stage 4: Transform Slides\n      const transformedSlides = await this.transformSlides(presentation);\n\n      // Stage 5: Render Output\n      const output = this.render(transformedSlides, presentation);\n\n      // Write output file if specified\n      if (options?.outputPath) {\n        await writeFile(options.outputPath, output, 'utf-8');\n      }\n\n      return {\n        output,\n        citations: citationIds,\n        warnings: this.warnings,\n        slideCount: presentation.slides.length,\n      };\n    } catch (error) {\n      if (error instanceof PipelineError) {\n        throw error;\n      }\n      throw new PipelineError(\n        error instanceof Error ? error.message : 'Unknown error',\n        'unknown',\n        error\n      );\n    }\n  }\n\n  /**\n   * Initialize the pipeline by loading templates and icon registry\n   */\n  async initialize(): Promise<void> {\n    try {\n      // Load built-in templates\n      await this.templateLoader.loadBuiltIn(this.config.templates.builtin);\n\n      // Load custom templates if specified\n      if (this.config.templates.custom) {\n        await this.templateLoader.loadCustom(this.config.templates.custom);\n      }\n\n      // Load icon registry\n      await this.iconRegistry.load(this.config.icons.registry);\n    } catch (error) {\n      throw new PipelineError(\n        `Failed to initialize pipeline: ${error instanceof Error ? error.message : 'Unknown error'}`,\n        'initialize',\n        error\n      );\n    }\n  }\n\n  /**\n   * Get collected warnings\n   */\n  getWarnings(): string[] {\n    return [...this.warnings];\n  }\n\n  // --- Private Stage Methods ---\n\n  /**\n   * Stage 1: Parse the YAML source file\n   */\n  private async parseSource(inputPath: string): Promise<ParsedPresentation> {\n    try {\n      return await this.parser.parseFile(inputPath);\n    } catch (error) {\n      throw new PipelineError(\n        `Failed to parse source file: ${error instanceof Error ? error.message : 'Unknown error'}`,\n        'parse',\n        error\n      );\n    }\n  }\n\n  /**\n   * Stage 2: Collect all citation IDs from the presentation\n   */\n  private collectCitations(presentation: ParsedPresentation): string[] {\n    const citations = this.citationExtractor.extractFromPresentation(presentation);\n    return this.citationExtractor.getUniqueIds(citations);\n  }\n\n  /**\n   * Stage 3: Resolve references from the reference manager\n   */\n  private async resolveReferences(ids: string[]): Promise<Map<string, CSLItem>> {\n    if (!this.config.references.enabled || ids.length === 0) {\n      return new Map();\n    }\n\n    try {\n      const items = await this.referenceManager.getByIds(ids);\n\n      // Warn about missing references\n      for (const id of ids) {\n        if (!items.has(id)) {\n          this.warnings.push(`Reference not found: ${id}`);\n        }\n      }\n\n      return items;\n    } catch (error) {\n      // Non-fatal: log warning and continue\n      this.warnings.push(\n        `Failed to resolve references: ${error instanceof Error ? error.message : 'Unknown error'}`\n      );\n      return new Map();\n    }\n  }\n\n  /**\n   * Stage 4: Transform all slides using templates\n   */\n  private async transformSlides(\n    presentation: ParsedPresentation\n  ): Promise<string[]> {\n    try {\n      return await this.transformer.transformAll(presentation);\n    } catch (error) {\n      throw new PipelineError(\n        `Failed to transform slides: ${error instanceof Error ? error.message : 'Unknown error'}`,\n        'transform',\n        error\n      );\n    }\n  }\n\n  /**\n   * Stage 5: Render the final Marp markdown\n   */\n  private render(\n    slides: string[],\n    presentation: ParsedPresentation\n  ): string {\n    try {\n      // Collect notes from slides\n      const notes = presentation.slides.map((slide) => slide.notes);\n\n      const renderOptions: RenderOptions = {\n        includeTheme: true,\n        notes,\n      };\n\n      return this.renderer.render(slides, presentation.meta, renderOptions);\n    } catch (error) {\n      throw new PipelineError(\n        `Failed to render output: ${error instanceof Error ? error.message : 'Unknown error'}`,\n        'render',\n        error\n      );\n    }\n  }\n}\n","import nunjucks from \"nunjucks\";\n\n/**\n * Icons helper interface for template rendering\n */\nexport interface IconsHelper {\n  render: (name: string, options?: Record<string, unknown>) => string;\n}\n\n/**\n * References helper interface for citation handling\n */\nexport interface RefsHelper {\n  cite: (id: string) => string;\n  expand: (text: string) => string;\n}\n\n/**\n * Slide context passed to templates\n */\nexport interface SlideContext {\n  index: number;\n  total: number;\n}\n\n/**\n * Meta context for presentation metadata\n */\nexport interface MetaContext {\n  title: string;\n  author?: string;\n  theme: string;\n  [key: string]: unknown;\n}\n\n/**\n * Full template context interface\n */\nexport interface TemplateContext {\n  content: Record<string, unknown>;\n  meta: MetaContext;\n  slide: SlideContext;\n  icons: IconsHelper;\n  refs: RefsHelper;\n  [key: string]: unknown;\n}\n\nexport class TemplateEngine {\n  private env: nunjucks.Environment;\n\n  constructor() {\n    this.env = new nunjucks.Environment(null, {\n      autoescape: false, // HTML output for Marp\n      throwOnUndefined: false,\n    });\n    this.registerFilters();\n    this.registerGlobals();\n  }\n\n  render(template: string, context: Record<string, unknown>): string {\n    return this.env.renderString(template, context);\n  }\n\n  private registerFilters(): void {\n    // Will be extended in later steps\n  }\n\n  private registerGlobals(): void {\n    // Icon helper stub - will be replaced with real implementation\n    const icons = {\n      render: (name: string, options?: Record<string, unknown>): string => {\n        const size = (options?.[\"size\"] as string) ?? \"24px\";\n        const color = (options?.[\"color\"] as string) ?? \"currentColor\";\n        return `<span class=\"icon icon-${name}\" style=\"font-size: ${size}; color: ${color};\">[${name}]</span>`;\n      },\n    };\n\n    this.env.addGlobal(\"icons\", icons);\n\n    // Reference helper stub - will be replaced with real implementation\n    const refs = {\n      cite: (id: string): string => {\n        const cleanId = id.replace(\"@\", \"\");\n        return `(${cleanId})`;\n      },\n      expand: (text: string): string => {\n        // Simple stub - replace [@id] with (id)\n        return text.replace(/\\[@(\\w+)\\]/g, \"($1)\");\n      },\n    };\n\n    this.env.addGlobal(\"refs\", refs);\n  }\n}\n","import { z } from \"zod\";\nimport * as yaml from \"yaml\";\nimport * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport {\n  validateWithJsonSchema,\n  type JsonSchema,\n  type ValidationResult,\n} from \"./validators\";\n\n/**\n * JSON Schema-like structure for template content validation\n */\nconst jsonSchemaSchema = z.record(z.unknown());\n\n/**\n * Template definition schema - validates YAML template definition files\n */\nexport const templateDefSchema = z.object({\n  name: z.string().min(1, \"Template name is required\"),\n  description: z.string(),\n  category: z.string(),\n  schema: jsonSchemaSchema,\n  example: z.record(z.unknown()).optional(),\n  output: z.string().min(1, \"Template output is required\"),\n  css: z.string().optional(),\n});\n\n/**\n * Template definition type derived from schema\n */\nexport type TemplateDefinition = z.infer<typeof templateDefSchema>;\n\n/**\n * Loads and manages template definitions from YAML files\n */\nexport class TemplateLoader {\n  private templates: Map<string, TemplateDefinition>;\n\n  constructor() {\n    this.templates = new Map();\n  }\n\n  /**\n   * Load a template from a YAML string\n   */\n  async loadFromString(yamlContent: string): Promise<void> {\n    const parsed = yaml.parse(yamlContent);\n    const result = templateDefSchema.safeParse(parsed);\n\n    if (!result.success) {\n      const errors = result.error.errors\n        .map(e => `${e.path.join(\".\")}: ${e.message}`)\n        .join(\", \");\n      throw new Error(`Invalid template definition: ${errors}`);\n    }\n\n    this.templates.set(result.data.name, result.data);\n  }\n\n  /**\n   * Load a template from a file\n   */\n  async loadFromFile(filePath: string): Promise<void> {\n    const content = await fs.readFile(filePath, \"utf-8\");\n    await this.loadFromString(content);\n  }\n\n  /**\n   * Load all templates from a directory (recursively)\n   */\n  async loadBuiltIn(directory: string): Promise<void> {\n    await this.loadDirectory(directory);\n  }\n\n  /**\n   * Load custom templates from a directory (can override built-in)\n   */\n  async loadCustom(directory: string): Promise<void> {\n    await this.loadDirectory(directory);\n  }\n\n  /**\n   * Internal method to load templates from a directory\n   */\n  private async loadDirectory(directory: string): Promise<void> {\n    const entries = await fs.readdir(directory, { withFileTypes: true });\n\n    for (const entry of entries) {\n      const fullPath = path.join(directory, entry.name);\n\n      if (entry.isDirectory()) {\n        await this.loadDirectory(fullPath);\n      } else if (entry.isFile() && (entry.name.endsWith(\".yaml\") || entry.name.endsWith(\".yml\"))) {\n        await this.loadFromFile(fullPath);\n      }\n    }\n  }\n\n  /**\n   * Get a template by name\n   */\n  get(name: string): TemplateDefinition | undefined {\n    return this.templates.get(name);\n  }\n\n  /**\n   * List all loaded templates\n   */\n  list(): TemplateDefinition[] {\n    return Array.from(this.templates.values());\n  }\n\n  /**\n   * List templates filtered by category\n   */\n  listByCategory(category: string): TemplateDefinition[] {\n    return this.list().filter(t => t.category === category);\n  }\n\n  /**\n   * Validate content against a template's schema\n   */\n  validateContent(templateName: string, content: unknown): ValidationResult {\n    const template = this.get(templateName);\n\n    if (!template) {\n      return {\n        valid: false,\n        errors: [`Template \"${templateName}\" not found`],\n      };\n    }\n\n    return validateWithJsonSchema(template.schema as JsonSchema, content);\n  }\n}\n\nexport type { ValidationResult };\n","import { z, type ZodTypeAny, type ZodIssue } from \"zod\";\n\n/**\n * JSON Schema type definition (subset used by templates)\n */\nexport interface JsonSchema {\n  type?: string;\n  required?: string[];\n  properties?: Record<string, JsonSchema>;\n  items?: JsonSchema;\n  minItems?: number;\n  maxItems?: number;\n  pattern?: string;\n  enum?: (string | number | boolean)[];\n  default?: unknown;\n  description?: string;\n  oneOf?: JsonSchema[];\n}\n\n/**\n * Validation result for content against template schema\n */\nexport interface ValidationResult {\n  valid: boolean;\n  errors: string[];\n}\n\n/**\n * Convert a JSON Schema object to a Zod schema\n *\n * Supports a subset of JSON Schema used by template definitions:\n * - Basic types: string, number, boolean, array, object\n * - Required fields\n * - Nested objects and arrays\n * - Pattern validation for strings\n * - minItems/maxItems for arrays\n */\nexport function jsonSchemaToZod(schema: JsonSchema): ZodTypeAny {\n  // Handle oneOf first (union type)\n  if (schema.oneOf && schema.oneOf.length > 0) {\n    const schemas = schema.oneOf.map((s) => jsonSchemaToZod(s));\n    if (schemas.length === 1) {\n      return schemas[0]!;\n    }\n    // z.union requires at least 2 schemas\n    return z.union(schemas as [ZodTypeAny, ZodTypeAny, ...ZodTypeAny[]]);\n  }\n\n  const type = schema.type ?? \"object\";\n\n  switch (type) {\n    case \"string\": {\n      // Handle enum first (enum values are always valid)\n      if (schema.enum && schema.enum.length > 0) {\n        const enumValues = schema.enum as [string, ...string[]];\n        return z.enum(enumValues);\n      }\n\n      let zodSchema = z.string();\n      if (schema.pattern) {\n        zodSchema = zodSchema.regex(new RegExp(schema.pattern));\n      }\n      return zodSchema;\n    }\n\n    case \"number\":\n      return z.number();\n\n    case \"integer\":\n      return z.number().int();\n\n    case \"boolean\":\n      return z.boolean();\n\n    case \"array\": {\n      const itemSchema = schema.items ? jsonSchemaToZod(schema.items) : z.unknown();\n      let arraySchema = z.array(itemSchema);\n\n      if (schema.minItems !== undefined) {\n        arraySchema = arraySchema.min(schema.minItems);\n      }\n      if (schema.maxItems !== undefined) {\n        arraySchema = arraySchema.max(schema.maxItems);\n      }\n\n      return arraySchema;\n    }\n\n    case \"object\": {\n      if (!schema.properties) {\n        return z.record(z.unknown());\n      }\n\n      const shape: Record<string, ZodTypeAny> = {};\n      const required = new Set(schema.required ?? []);\n\n      for (const [key, propSchema] of Object.entries(schema.properties)) {\n        const propZod = jsonSchemaToZod(propSchema);\n        shape[key] = required.has(key) ? propZod : propZod.optional();\n      }\n\n      return z.object(shape).passthrough();\n    }\n\n    default:\n      return z.unknown();\n  }\n}\n\n/**\n * Validate content against a JSON Schema\n */\nexport function validateWithJsonSchema(\n  schema: JsonSchema,\n  content: unknown\n): ValidationResult {\n  const zodSchema = jsonSchemaToZod(schema);\n  const result = zodSchema.safeParse(content);\n\n  if (result.success) {\n    return { valid: true, errors: [] };\n  }\n\n  const errors = result.error.errors.map((issue: ZodIssue) => {\n    const path = issue.path.join(\".\");\n    return path ? `${path}: ${issue.message}` : issue.message;\n  });\n\n  return { valid: false, errors };\n}\n","import * as fs from \"node:fs/promises\";\nimport { parse as parseYaml } from \"yaml\";\nimport {\n  iconRegistrySchema,\n  type IconRegistry,\n  type IconSource,\n  type IconDefaults,\n} from \"./schema.js\";\n\n/**\n * Parsed icon reference with prefix and name\n */\nexport interface ParsedIconReference {\n  prefix: string;\n  name: string;\n}\n\n/**\n * Icon Registry Loader - loads and manages icon registry configuration\n */\nexport class IconRegistryLoader {\n  private registry: IconRegistry | null = null;\n  private sourcesByPrefix: Map<string, IconSource> = new Map();\n  private aliasMap: Map<string, string> = new Map();\n  private colorMap: Map<string, string> = new Map();\n\n  /**\n   * Load registry from YAML file\n   */\n  async load(configPath: string): Promise<IconRegistry> {\n    const content = await fs.readFile(configPath, \"utf-8\");\n    const parsed = parseYaml(content);\n    const validated = iconRegistrySchema.parse(parsed);\n\n    this.registry = validated;\n    this.buildMaps();\n\n    return validated;\n  }\n\n  /**\n   * Resolve an alias to its icon reference\n   * @returns The resolved icon reference or the original name if not an alias\n   */\n  resolveAlias(nameOrAlias: string): string {\n    return this.aliasMap.get(nameOrAlias) ?? nameOrAlias;\n  }\n\n  /**\n   * Get icon source by prefix\n   */\n  getSource(prefix: string): IconSource | undefined {\n    return this.sourcesByPrefix.get(prefix);\n  }\n\n  /**\n   * Parse an icon reference string (e.g., \"mi:home\" or \"iconify:mdi:account\")\n   * @returns Parsed reference or null if invalid format\n   */\n  parseIconReference(reference: string): ParsedIconReference | null {\n    const colonIndex = reference.indexOf(\":\");\n    if (colonIndex === -1) {\n      return null;\n    }\n\n    const prefix = reference.substring(0, colonIndex);\n    const name = reference.substring(colonIndex + 1);\n\n    return { prefix, name };\n  }\n\n  /**\n   * Get registry defaults\n   */\n  getDefaults(): IconDefaults {\n    if (!this.registry) {\n      return { size: \"24px\", color: \"currentColor\" };\n    }\n    return this.registry.defaults;\n  }\n\n  /**\n   * Get color by name from color palette\n   */\n  getColor(name: string): string | undefined {\n    return this.colorMap.get(name);\n  }\n\n  /**\n   * Get all sources\n   */\n  getSources(): IconSource[] {\n    return this.registry?.sources ?? [];\n  }\n\n  /**\n   * Get all aliases\n   */\n  getAliases(): Record<string, string> {\n    return this.registry?.aliases ?? {};\n  }\n\n  /**\n   * Check if registry is loaded\n   */\n  isLoaded(): boolean {\n    return this.registry !== null;\n  }\n\n  /**\n   * Build internal lookup maps from registry\n   */\n  private buildMaps(): void {\n    this.sourcesByPrefix.clear();\n    this.aliasMap.clear();\n    this.colorMap.clear();\n\n    if (!this.registry) {\n      return;\n    }\n\n    // Build sources map\n    for (const source of this.registry.sources) {\n      this.sourcesByPrefix.set(source.prefix, source);\n    }\n\n    // Build aliases map\n    for (const [alias, target] of Object.entries(this.registry.aliases)) {\n      this.aliasMap.set(alias, target);\n    }\n\n    // Build colors map\n    if (this.registry.colors) {\n      for (const [name, color] of Object.entries(this.registry.colors)) {\n        this.colorMap.set(name, color);\n      }\n    }\n  }\n}\n","import { z } from \"zod\";\n\n/**\n * Schema for icon source types\n */\nexport const iconSourceTypeSchema = z.enum([\n  \"web-font\",\n  \"svg-inline\",\n  \"svg-sprite\",\n  \"local-svg\",\n]);\n\nexport type IconSourceType = z.infer<typeof iconSourceTypeSchema>;\n\n/**\n * Schema for individual icon source definition\n */\nexport const iconSourceSchema = z.object({\n  name: z.string(),\n  type: iconSourceTypeSchema,\n  prefix: z.string(),\n  url: z.string().optional(),\n  path: z.string().optional(),\n  render: z.string().optional(),\n});\n\nexport type IconSource = z.infer<typeof iconSourceSchema>;\n\n/**\n * Schema for icon defaults\n */\nexport const iconDefaultsSchema = z.object({\n  size: z.string().default(\"24px\"),\n  color: z.string().default(\"currentColor\"),\n});\n\nexport type IconDefaults = z.infer<typeof iconDefaultsSchema>;\n\n/**\n * Schema for the full icon registry configuration\n */\nexport const iconRegistrySchema = z.object({\n  sources: z.array(iconSourceSchema),\n  aliases: z.record(z.string()).default({}),\n  colors: z.record(z.string()).optional(),\n  defaults: iconDefaultsSchema.default({}),\n});\n\nexport type IconRegistry = z.infer<typeof iconRegistrySchema>;\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport nunjucks from \"nunjucks\";\nimport { IconRegistryLoader } from \"./registry.js\";\nimport type { IconSource } from \"./schema.js\";\n\n/**\n * Options for rendering an icon\n */\nexport interface IconOptions {\n  size?: string;\n  color?: string;\n  class?: string;\n}\n\n/**\n * Icon Resolver - renders icons from various sources\n */\nexport class IconResolver {\n  private nunjucksEnv: nunjucks.Environment;\n\n  constructor(private registry: IconRegistryLoader) {\n    this.nunjucksEnv = new nunjucks.Environment(null, {\n      autoescape: false,\n    });\n  }\n\n  /**\n   * Render an icon by name or alias\n   */\n  async render(nameOrAlias: string, options?: IconOptions): Promise<string> {\n    // Resolve alias if needed\n    const resolved = this.registry.resolveAlias(nameOrAlias);\n\n    // Parse the icon reference\n    const parsed = this.registry.parseIconReference(resolved);\n    if (!parsed) {\n      throw new Error(\n        `Invalid icon reference format: \"${resolved}\". Expected format: \"prefix:name\"`\n      );\n    }\n\n    // Get the source for this prefix\n    const source = this.registry.getSource(parsed.prefix);\n    if (!source) {\n      throw new Error(`Unknown icon source prefix: \"${parsed.prefix}\"`);\n    }\n\n    // Get defaults and merge options\n    const defaults = this.registry.getDefaults();\n    const mergedOptions: Required<Omit<IconOptions, \"class\">> & Pick<IconOptions, \"class\"> = {\n      size: options?.size ?? defaults.size,\n      color: options?.color ?? defaults.color,\n      ...(options?.class !== undefined ? { class: options.class } : {}),\n    };\n\n    // Render based on source type\n    switch (source.type) {\n      case \"web-font\":\n        return this.renderWebFont(source, parsed.name, mergedOptions);\n      case \"local-svg\":\n        return await this.renderLocalSvg(source, parsed.name, mergedOptions);\n      case \"svg-inline\":\n        return await this.renderSvgInline(source, parsed.name, mergedOptions);\n      case \"svg-sprite\":\n        return this.renderSvgSprite(source, parsed.name, mergedOptions);\n      default:\n        throw new Error(`Unsupported icon source type: \"${source.type}\"`);\n    }\n  }\n\n  /**\n   * Render a web-font icon\n   */\n  private renderWebFont(\n    source: IconSource,\n    name: string,\n    options: IconOptions\n  ): string {\n    const style = this.buildStyle(options);\n    const className = this.buildClassName(name, options);\n\n    if (source.render) {\n      // Use custom render template\n      return this.nunjucksEnv.renderString(source.render, {\n        name,\n        style,\n        class: className,\n        size: options.size,\n        color: options.color,\n      });\n    }\n\n    // Default web-font render\n    return `<span class=\"${className}\" style=\"${style}\">${name}</span>`;\n  }\n\n  /**\n   * Render a local SVG icon\n   */\n  private async renderLocalSvg(\n    source: IconSource,\n    name: string,\n    options: IconOptions\n  ): Promise<string> {\n    if (!source.path) {\n      throw new Error(`Local SVG source \"${source.name}\" has no path defined`);\n    }\n\n    const svgPath = path.join(source.path, `${name}.svg`);\n\n    try {\n      const svgContent = await fs.readFile(svgPath, \"utf-8\");\n      return this.processSvg(svgContent, name, options);\n    } catch (error) {\n      if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\n        throw new Error(`Icon file not found: ${svgPath}`);\n      }\n      throw error;\n    }\n  }\n\n  /**\n   * Render an SVG from external URL (placeholder without cache)\n   */\n  private async renderSvgInline(\n    source: IconSource,\n    name: string,\n    options: IconOptions\n  ): Promise<string> {\n    // Without cache implementation, return a placeholder\n    // Cache will be integrated in Step 4\n    const className = this.buildClassName(name, options);\n    const style = this.buildStyle(options);\n\n    return `<span class=\"${className}\" style=\"${style}\" data-icon-source=\"${source.name}\" data-icon-name=\"${name}\">[${name}]</span>`;\n  }\n\n  /**\n   * Render an SVG sprite reference\n   */\n  private renderSvgSprite(\n    source: IconSource,\n    name: string,\n    options: IconOptions\n  ): string {\n    const className = this.buildClassName(name, options);\n    const size = options.size ?? \"24px\";\n    const color = options.color ?? \"currentColor\";\n\n    const spriteUrl = source.url ?? \"\";\n\n    return `<svg class=\"${className}\" width=\"${size}\" height=\"${size}\" fill=\"${color}\">\n  <use xlink:href=\"${spriteUrl}#${name}\"/>\n</svg>`;\n  }\n\n  /**\n   * Process SVG content and apply options\n   */\n  private processSvg(\n    svgContent: string,\n    name: string,\n    options: IconOptions\n  ): string {\n    const className = this.buildClassName(name, options);\n    const size = options.size ?? \"24px\";\n    const color = options.color ?? \"currentColor\";\n\n    // Parse and modify SVG attributes\n    let processed = svgContent.trim();\n\n    // Add/replace class attribute\n    if (processed.includes(\"class=\")) {\n      processed = processed.replace(/class=\"[^\"]*\"/, `class=\"${className}\"`);\n    } else {\n      processed = processed.replace(\"<svg\", `<svg class=\"${className}\"`);\n    }\n\n    // Add/replace width and height\n    if (processed.includes(\"width=\")) {\n      processed = processed.replace(/width=\"[^\"]*\"/, `width=\"${size}\"`);\n    } else {\n      processed = processed.replace(\"<svg\", `<svg width=\"${size}\"`);\n    }\n\n    if (processed.includes(\"height=\")) {\n      processed = processed.replace(/height=\"[^\"]*\"/, `height=\"${size}\"`);\n    } else {\n      processed = processed.replace(\"<svg\", `<svg height=\"${size}\"`);\n    }\n\n    // Replace fill=\"currentColor\" with actual color\n    if (color !== \"currentColor\") {\n      processed = processed.replace(/fill=\"currentColor\"/g, `fill=\"${color}\"`);\n    }\n\n    return processed;\n  }\n\n  /**\n   * Build CSS style string\n   */\n  private buildStyle(options: IconOptions): string {\n    const styles: string[] = [];\n\n    if (options.size) {\n      styles.push(`font-size: ${options.size}`);\n    }\n\n    if (options.color) {\n      styles.push(`color: ${options.color}`);\n    }\n\n    return styles.join(\"; \");\n  }\n\n  /**\n   * Build class name string\n   */\n  private buildClassName(name: string, options: IconOptions): string {\n    const classes = [\"icon\", `icon-${name}`];\n\n    if (options.class) {\n      classes.push(options.class);\n    }\n\n    return classes.join(\" \");\n  }\n}\n","import { exec } from 'child_process';\n\nexport interface CSLAuthor {\n  family: string;\n  given?: string;\n}\n\nexport interface CSLItem {\n  id: string;\n  author?: CSLAuthor[];\n  issued?: { 'date-parts': number[][] };\n  title?: string;\n  DOI?: string;\n  PMID?: string;\n  'container-title'?: string;\n  volume?: string;\n  issue?: string;\n  page?: string;\n  URL?: string;\n  type?: string;\n}\n\nexport class ReferenceManagerError extends Error {\n  constructor(\n    message: string,\n    public cause?: unknown\n  ) {\n    super(message);\n    this.name = 'ReferenceManagerError';\n  }\n}\n\n/**\n * Client for reference-manager CLI\n */\nexport class ReferenceManager {\n  constructor(private command: string = 'ref') {}\n\n  /**\n   * Check if reference-manager CLI is available\n   */\n  async isAvailable(): Promise<boolean> {\n    try {\n      await this.execCommand(`${this.command} --version`);\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Get all references from the library\n   */\n  async getAll(): Promise<CSLItem[]> {\n    const result = await this.execCommand(`${this.command} list --format json`);\n    return this.parseJSON(result);\n  }\n\n  /**\n   * Get a single reference by ID\n   */\n  async getById(id: string): Promise<CSLItem | null> {\n    const result = await this.execCommand(\n      `${this.command} list --id ${id} --format json`\n    );\n    const items = this.parseJSON(result);\n    return items[0] || null;\n  }\n\n  /**\n   * Get multiple references by IDs\n   */\n  async getByIds(ids: string[]): Promise<Map<string, CSLItem>> {\n    if (ids.length === 0) {\n      return new Map();\n    }\n\n    const result = await this.execCommand(`${this.command} list --format json`);\n    const allItems = this.parseJSON(result);\n\n    const idSet = new Set(ids);\n    const map = new Map<string, CSLItem>();\n\n    for (const item of allItems) {\n      if (idSet.has(item.id)) {\n        map.set(item.id, item);\n      }\n    }\n\n    return map;\n  }\n\n  private execCommand(cmd: string): Promise<string> {\n    return new Promise((resolve, reject) => {\n      exec(cmd, (error, stdout) => {\n        if (error) {\n          reject(\n            new ReferenceManagerError(`Failed to execute: ${cmd}`, error)\n          );\n          return;\n        }\n        resolve(stdout.toString());\n      });\n    });\n  }\n\n  private parseJSON(data: string): CSLItem[] {\n    try {\n      return JSON.parse(data) as CSLItem[];\n    } catch (error) {\n      throw new ReferenceManagerError(\n        'Failed to parse reference-manager output as JSON',\n        error\n      );\n    }\n  }\n}\n","import type { ParsedSlide, ParsedPresentation } from '../core/parser';\n\nexport interface ExtractedCitation {\n  id: string;\n  locator?: string | undefined;\n  position: { start: number; end: number };\n}\n\n// Pattern to match citations like [@id], [@id, p.42], [@id1; @id2]\n// Matches: [@word-chars] or [@word-chars, locator]\nconst SINGLE_CITATION_PATTERN = /@([\\w-]+)(?:,\\s*([^;\\]]+))?/g;\nconst CITATION_BRACKET_PATTERN = /\\[(@[\\w-]+(?:,\\s*[^;\\]]+)?(?:;\\s*@[\\w-]+(?:,\\s*[^;\\]]+)?)*)\\]/g;\n\n// Pattern to extract @id from source field in structured citations\nconst SOURCE_CITATION_PATTERN = /^@([\\w-]+)$/;\n\nexport class CitationExtractor {\n  /**\n   * Extract citations from a text string\n   */\n  extract(text: string): ExtractedCitation[] {\n    const citations: ExtractedCitation[] = [];\n\n    // Find all bracketed citation groups\n    let bracketMatch: RegExpExecArray | null;\n    CITATION_BRACKET_PATTERN.lastIndex = 0;\n\n    while ((bracketMatch = CITATION_BRACKET_PATTERN.exec(text)) !== null) {\n      const bracketStart = bracketMatch.index;\n      const bracketContent = bracketMatch[1];\n\n      // Parse individual citations within the bracket\n      SINGLE_CITATION_PATTERN.lastIndex = 0;\n      let singleMatch: RegExpExecArray | null;\n\n      while ((singleMatch = SINGLE_CITATION_PATTERN.exec(bracketContent!)) !== null) {\n        const id = singleMatch[1]!;\n        const locator = singleMatch[2]?.trim();\n\n        citations.push({\n          id,\n          locator: locator ?? undefined,\n          position: {\n            start: bracketStart,\n            end: bracketStart + bracketMatch[0].length,\n          },\n        });\n      }\n    }\n\n    return citations;\n  }\n\n  /**\n   * Extract citations from a slide's content\n   */\n  extractFromSlide(slide: ParsedSlide): ExtractedCitation[] {\n    const allCitations: ExtractedCitation[] = [];\n    const seenIds = new Set<string>();\n\n    // Extract from content recursively\n    const extractFromValue = (value: unknown): void => {\n      if (typeof value === 'string') {\n        // Check for structured source citation (e.g., source: \"@smith2024\")\n        const sourceMatch = SOURCE_CITATION_PATTERN.exec(value);\n        if (sourceMatch && sourceMatch[1]) {\n          const id = sourceMatch[1];\n          if (!seenIds.has(id)) {\n            seenIds.add(id);\n            allCitations.push({\n              id,\n              locator: undefined,\n              position: { start: 0, end: value.length },\n            });\n          }\n          return;\n        }\n\n        // Regular citation extraction\n        const citations = this.extract(value);\n        for (const citation of citations) {\n          if (!seenIds.has(citation.id)) {\n            seenIds.add(citation.id);\n            allCitations.push(citation);\n          }\n        }\n      } else if (Array.isArray(value)) {\n        for (const item of value) {\n          extractFromValue(item);\n        }\n      } else if (value && typeof value === 'object') {\n        for (const v of Object.values(value)) {\n          extractFromValue(v);\n        }\n      }\n    };\n\n    // Extract from content\n    extractFromValue(slide.content);\n\n    // Extract from notes if present\n    if (slide.notes) {\n      const notesCitations = this.extract(slide.notes);\n      for (const citation of notesCitations) {\n        if (!seenIds.has(citation.id)) {\n          seenIds.add(citation.id);\n          allCitations.push(citation);\n        }\n      }\n    }\n\n    return allCitations;\n  }\n\n  /**\n   * Extract citations from all slides in a presentation\n   */\n  extractFromPresentation(presentation: ParsedPresentation): ExtractedCitation[] {\n    const allCitations: ExtractedCitation[] = [];\n    const seenIds = new Set<string>();\n\n    for (const slide of presentation.slides) {\n      const slideCitations = this.extractFromSlide(slide);\n      for (const citation of slideCitations) {\n        if (!seenIds.has(citation.id)) {\n          seenIds.add(citation.id);\n          allCitations.push(citation);\n        }\n      }\n    }\n\n    return allCitations;\n  }\n\n  /**\n   * Get unique citation IDs in order of first appearance\n   */\n  getUniqueIds(citations: ExtractedCitation[]): string[] {\n    const seen = new Set<string>();\n    const uniqueIds: string[] = [];\n\n    for (const citation of citations) {\n      if (!seen.has(citation.id)) {\n        seen.add(citation.id);\n        uniqueIds.push(citation.id);\n      }\n    }\n\n    return uniqueIds;\n  }\n}\n","import type { ReferenceManager, CSLItem, CSLAuthor } from 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Required<FormatterConfig>;\n\n  constructor(\n    private manager: ReferenceManager,\n    config?: FormatterConfig\n  ) {\n    this.config = {\n      author: { ...DEFAULT_CONFIG.author, ...config?.author },\n      inline: { ...DEFAULT_CONFIG.inline, ...config?.inline },\n    };\n  }\n\n  /**\n   * Format an inline citation\n   * e.g., \"(Smith et al., 2024; PMID: 12345678)\"\n   */\n  async formatInline(id: string): Promise<string> {\n    const item = await this.manager.getById(id);\n    if (!item) {\n      return `[${id}]`;\n    }\n\n    return this.formatInlineItem(item);\n  }\n\n  /**\n   * Format a full bibliography citation\n   */\n  async formatFull(id: string): Promise<string> {\n    const item = await this.manager.getById(id);\n    if (!item) {\n      return `[${id}]`;\n    }\n\n    return this.formatFullItem(item);\n  }\n\n  /**\n   * Expand all citations in text\n   * e.g., \"[@smith2024]\" -> \"(Smith et al., 2024; PMID: 12345678)\"\n   */\n  async expandCitations(text: string): Promise<string> {\n    // First, collect all citation IDs\n    const ids = new Set<string>();\n    CITATION_BRACKET_PATTERN.lastIndex = 0;\n\n    let match: RegExpExecArray | null;\n    while ((match = CITATION_BRACKET_PATTERN.exec(text)) !== null) {\n      const content = match[1];\n      SINGLE_CITATION_PATTERN.lastIndex = 0;\n\n      let singleMatch: RegExpExecArray | null;\n      while ((singleMatch = SINGLE_CITATION_PATTERN.exec(content!)) !== null) {\n        ids.add(singleMatch[1]!);\n      }\n    }\n\n    // Fetch all items at once\n    const items = await this.manager.getByIds([...ids]);\n\n    // Replace citations\n    CITATION_BRACKET_PATTERN.lastIndex = 0;\n    let result = text;\n\n    // Reset and iterate again for replacement\n    const matches: Array<{\n      start: number;\n      end: number;\n      replacement: string;\n    }> = [];\n\n    CITATION_BRACKET_PATTERN.lastIndex = 0;\n    while ((match = CITATION_BRACKET_PATTERN.exec(text)) !== null) {\n      const content = match[1];\n      const replacements: string[] = [];\n\n      SINGLE_CITATION_PATTERN.lastIndex = 0;\n      let singleMatch: RegExpExecArray | null;\n      while ((singleMatch = SINGLE_CITATION_PATTERN.exec(content!)) !== null) {\n        const id = singleMatch[1]!;\n        const item = items.get(id);\n        if (item) {\n          replacements.push(this.formatInlineItem(item));\n        } else {\n          replacements.push(`[${id}]`);\n        }\n      }\n\n      matches.push({\n        start: match.index,\n        end: match.index + match[0].length,\n        replacement: replacements.join(', '),\n      });\n    }\n\n    // Apply replacements from end to start to maintain positions\n    for (const m of [...matches].reverse()) {\n      result = result.slice(0, m.start) + m.replacement + result.slice(m.end);\n    }\n\n    return result;\n  }\n\n  /**\n   * Generate bibliography entries\n   */\n  async generateBibliography(\n    ids: string[],\n    sort: 'author' | 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package/icons/custom/.gitkeep

@@ -0,0 +1,3 @@
+# This directory is for custom SVG icons.
+# Place your .svg files here and reference them with the "custom:" prefix.
+# Example: custom:my-icon will load ./icons/custom/my-icon.svg

package/icons/registry.yaml

@@ -0,0 +1,77 @@
+# Icon Registry Configuration
+# This file defines icon sources, aliases, and defaults for the slide generation system.
+
+# Icon source definitions
+sources:
+  # Material Icons (Web Font)
+  - name: material-icons
+    type: web-font
+    prefix: mi
+    url: "https://fonts.googleapis.com/icon?family=Material+Icons"
+    render: '<span class="material-icons" style="{{ style }}">{{ name }}</span>'
+
+  # Heroicons (SVG CDN)
+  - name: heroicons
+    type: svg-inline
+    prefix: hero
+    url: "https://unpkg.com/heroicons@2.0.0/24/outline/{name}.svg"
+
+  # Iconify (Universal SVG CDN)
+  - name: iconify
+    type: svg-inline
+    prefix: iconify
+    url: "https://api.iconify.design/{set}/{name}.svg"
+
+  # Custom local SVG icons
+  - name: custom
+    type: local-svg
+    prefix: custom
+    path: "./icons/custom/"
+
+# Semantic aliases - map meaningful names to actual icons
+aliases:
+  # Actions
+  planning: "mi:event_note"
+  action: "mi:play_arrow"
+  analysis: "mi:analytics"
+  improvement: "mi:trending_up"
+
+  # Status
+  success: "mi:check_circle"
+  warning: "mi:warning"
+  error: "mi:error"
+  info: "mi:info"
+
+  # Objects
+  document: "mi:description"
+  folder: "mi:folder"
+  database: "mi:storage"
+  settings: "mi:settings"
+
+  # Navigation
+  home: "mi:home"
+  back: "mi:arrow_back"
+  forward: "mi:arrow_forward"
+  up: "mi:arrow_upward"
+  down: "mi:arrow_downward"
+
+  # Communication
+  email: "mi:email"
+  phone: "mi:phone"
+  chat: "mi:chat"
+  notification: "mi:notifications"
+
+# Color palette for icons
+colors:
+  primary: "#1976D2"
+  secondary: "#424242"
+  accent: "#FF4081"
+  success: "#4CAF50"
+  warning: "#FF9800"
+  danger: "#F44336"
+  info: "#2196F3"
+
+# Default icon settings
+defaults:
+  size: "24px"
+  color: "currentColor"

package/package.json

@@ -0,0 +1,84 @@
+{
+  "name": "@ncukondo/slide-generation",
+  "version": "0.1.0",
+  "description": "A CLI tool to generate Marp-compatible Markdown from YAML source files",
+  "type": "module",
+  "main": "./dist/index.js",
+  "types": "./dist/index.d.ts",
+  "bin": {
+    "slide-gen": "./dist/cli/index.js"
+  },
+  "exports": {
+    ".": {
+      "import": "./dist/index.js",
+      "types": "./dist/index.d.ts"
+    }
+  },
+  "files": [
+    "dist",
+    "templates",
+    "themes",
+    "icons",
+    "README.md",
+    "README_ja.md",
+    "CHANGELOG.md",
+    "LICENSE"
+  ],
+  "scripts": {
+    "dev": "tsup --watch",
+    "build": "tsup",
+    "test": "vitest run",
+    "test:watch": "vitest",
+    "typecheck": "tsc --noEmit",
+    "lint": "oxlint",
+    "format": "oxfmt write src",
+    "format:check": "oxfmt check src",
+    "prepublishOnly": "pnpm build && pnpm test && pnpm lint && pnpm typecheck"
+  },
+  "keywords": [
+    "marp",
+    "slides",
+    "markdown",
+    "yaml",
+    "presentation",
+    "cli",
+    "slide-generation",
+    "template"
+  ],
+  "author": "ncukondo",
+  "license": "MIT",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/ncukondo/slide-generation.git"
+  },
+  "bugs": {
+    "url": "https://github.com/ncukondo/slide-generation/issues"
+  },
+  "homepage": "https://github.com/ncukondo/slide-generation#readme",
+  "publishConfig": {
+    "access": "public"
+  },
+  "engines": {
+    "node": ">=22.0.0"
+  },
+  "packageManager": "pnpm@9.15.4",
+  "dependencies": {
+    "chalk": "^5.4.1",
+    "chokidar": "^4.0.3",
+    "commander": "^13.1.0",
+    "globby": "^14.0.2",
+    "nunjucks": "^3.2.4",
+    "ora": "^8.1.1",
+    "yaml": "^2.7.0",
+    "zod": "^3.24.1"
+  },
+  "devDependencies": {
+    "@types/node": "^22.10.7",
+    "@types/nunjucks": "^3.2.6",
+    "oxfmt": "^0.23.0",
+    "oxlint": "^0.16.6",
+    "tsup": "^8.3.5",
+    "typescript": "^5.7.3",
+    "vitest": "^3.0.4"
+  }
+}

package/templates/basic/bullet-list.yaml

@@ -0,0 +1,39 @@
+name: bullet-list
+description: "箇条書きリスト"
+category: basic
+
+schema:
+  type: object
+  required:
+    - title
+    - items
+  properties:
+    title:
+      type: string
+      description: "スライドタイトル"
+    items:
+      type: array
+      description: "リスト項目（文字列またはネスト構造）"
+
+example:
+  title: "主なポイント"
+  items:
+    - "項目1"
+    - "項目2"
+    - "項目3"
+
+output: |
+  # {{ content.title }}
+
+  {% macro indent(n) %}{% for i in range(n) %}  {% endfor %}{% endmacro %}
+  {% macro renderItems(items, depth) %}
+  {% for item in items %}
+  {% if item is string %}
+  {{ indent(depth) }}- {{ refs.expand(item) }}
+  {% elif item.nested %}
+  {{ indent(depth) }}- {{ item.nested.title }}
+  {{ renderItems(item.nested.items, depth + 1) }}
+  {% endif %}
+  {% endfor %}
+  {% endmacro %}
+  {{ renderItems(content.items, 0) }}

package/templates/basic/numbered-list.yaml

@@ -0,0 +1,39 @@
+name: numbered-list
+description: "番号付きリスト"
+category: basic
+
+schema:
+  type: object
+  required:
+    - title
+    - items
+  properties:
+    title:
+      type: string
+      description: "スライドタイトル"
+    items:
+      type: array
+      description: "リスト項目（文字列またはネスト構造）"
+
+example:
+  title: "手順"
+  items:
+    - "最初のステップ"
+    - "次のステップ"
+    - "最後のステップ"
+
+output: |
+  # {{ content.title }}
+
+  {% macro indent(n) %}{% for i in range(n) %}   {% endfor %}{% endmacro %}
+  {% macro renderItems(items, depth) %}
+  {% for item in items %}
+  {% if item is string %}
+  {{ indent(depth) }}{{ loop.index }}. {{ refs.expand(item) }}
+  {% elif item.nested %}
+  {{ indent(depth) }}{{ loop.index }}. {{ item.nested.title }}
+  {{ renderItems(item.nested.items, depth + 1) }}
+  {% endif %}
+  {% endfor %}
+  {% endmacro %}
+  {{ renderItems(content.items, 0) }}

package/templates/basic/section.yaml

@@ -0,0 +1,26 @@
+name: section
+description: "セクション区切り"
+category: basic
+
+schema:
+  type: object
+  required:
+    - title
+  properties:
+    title:
+      type: string
+      description: "セクションタイトル"
+    subtitle:
+      type: string
+      description: "サブタイトル（オプション）"
+
+example:
+  title: "第1章"
+  subtitle: "はじめに"
+
+output: |
+  <!-- _class: section -->
+
+  # {{ content.title }}
+
+  {% if content.subtitle %}{{ content.subtitle }}{% endif %}

package/templates/basic/title.yaml

@@ -0,0 +1,46 @@
+name: title
+description: "タイトルスライド"
+category: basic
+
+schema:
+  type: object
+  required:
+    - title
+  properties:
+    title:
+      type: string
+      description: "メインタイトル"
+    subtitle:
+      type: string
+      description: "サブタイトル"
+    author:
+      type: string
+      description: "著者名"
+    date:
+      type: string
+      description: "日付"
+    affiliation:
+      type: string
+      description: "所属"
+
+example:
+  title: "プレゼンテーションタイトル"
+  subtitle: "サブタイトル"
+  author: "著者名"
+  date: "2024-01-15"
+  affiliation: "所属組織"
+
+output: |
+  <!-- _class: title -->
+
+  # {{ content.title }}
+
+  {% if content.subtitle %}## {{ content.subtitle }}{% endif %}
+
+  {% if content.author or content.affiliation or content.date %}
+  <div class="title-meta">
+    {% if content.author %}<span class="author">{{ content.author }}</span>{% endif %}
+    {% if content.affiliation %}<span class="affiliation">{{ content.affiliation }}</span>{% endif %}
+    {% if content.date %}<span class="date">{{ content.date }}</span>{% endif %}
+  </div>
+  {% endif %}

package/templates/data/comparison-table.yaml

@@ -0,0 +1,107 @@
+name: comparison-table
+description: "比較表（強調付き）"
+category: data
+
+schema:
+  type: object
+  required:
+    - title
+    - items
+    - criteria
+  properties:
+    title:
+      type: string
+      description: "スライドタイトル"
+    items:
+      type: array
+      minItems: 2
+      description: "比較対象の項目（2つ以上）"
+      items:
+        type: string
+    highlightColumn:
+      type: integer
+      description: "強調する列のインデックス（0始まり）"
+    criteria:
+      type: array
+      minItems: 1
+      description: "比較基準"
+      items:
+        type: object
+        required:
+          - label
+          - values
+        properties:
+          label:
+            type: string
+            description: "基準のラベル"
+          description:
+            type: string
+            description: "基準の説明（オプション）"
+          values:
+            type: array
+            description: "各項目に対する値"
+            items:
+              type: string
+
+example:
+  title: "プラン比較"
+  items: ["Free", "Pro", "Enterprise"]
+  highlightColumn: 1
+  criteria:
+    - label: "ストレージ"
+      values: ["5GB", "100GB", "無制限"]
+    - label: "サポート"
+      description: "カスタマーサポートの種類"
+      values: ["メール", "24時間チャット", "専属担当"]
+    - label: "API"
+      values: ["no", "yes", "yes"]
+    - label: "カスタムドメイン"
+      values: ["no", "partial", "yes"]
+
+output: |
+  <!-- _class: data-slide comparison-slide -->
+
+  # {{ content.title }}
+
+  {% macro escape_pipe(text) %}{{ text | replace("|", "\\|") }}{% endmacro %}
+  {% macro eval_mark(value) %}{% if value == 'yes' or value == 'YES' or value == 'true' %}✓{% elif value == 'no' or value == 'NO' or value == 'false' %}✗{% elif value == 'partial' or value == 'PARTIAL' %}△{% else %}{{ value }}{% endif %}{% endmacro %}
+  {% macro highlight_class(index) %}{% if content.highlightColumn is defined and content.highlightColumn == index %} **{% endif %}{% endmacro %}
+  {% macro highlight_end(index) %}{% if content.highlightColumn is defined and content.highlightColumn == index %}** {% endif %}{% endmacro %}
+  <div class="comparison-container">
+
+  | 比較項目 | {% for item in content.items %}{{ highlight_class(loop.index0) }}{{ escape_pipe(item) }}{{ highlight_end(loop.index0) }} | {% endfor %}
+
+  | --- |{% for item in content.items %} --- |{% endfor %}
+
+  {% for criterion in content.criteria %}| **{{ escape_pipe(criterion.label) }}**{% if criterion.description %} <br><small>{{ escape_pipe(criterion.description) }}</small>{% endif %} | {% for value in criterion.values %}{{ highlight_class(loop.index0) }}{{ eval_mark(value) }}{{ highlight_end(loop.index0) }} | {% endfor %}
+
+  {% endfor %}
+  </div>
+
+css: |
+  .comparison-slide table {
+    width: 100%;
+    border-collapse: collapse;
+  }
+  .comparison-slide th,
+  .comparison-slide td {
+    border: 1px solid #ddd;
+    padding: 0.75em;
+    text-align: center;
+  }
+  .comparison-slide th:first-child,
+  .comparison-slide td:first-child {
+    text-align: left;
+  }
+  .comparison-slide thead th {
+    background-color: #f5f5f5;
+    font-weight: bold;
+  }
+  .comparison-slide .highlight {
+    background-color: #E3F2FD;
+    font-weight: bold;
+  }
+  .comparison-slide small {
+    font-size: 0.8em;
+    color: #666;
+  }