@ncukondo/search-hub 0.12.1 → 0.12.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (334) hide show
  1. package/dist/_virtual/_commonjsHelpers.js +30 -0
  2. package/dist/_virtual/_commonjsHelpers.js.map +1 -0
  3. package/dist/_virtual/aliases.js +5 -0
  4. package/dist/_virtual/aliases.js.map +1 -0
  5. package/dist/_virtual/attributes.js +5 -0
  6. package/dist/_virtual/attributes.js.map +1 -0
  7. package/dist/_virtual/back.js +5 -0
  8. package/dist/_virtual/back.js.map +1 -0
  9. package/dist/_virtual/comment.js +5 -0
  10. package/dist/_virtual/comment.js.map +1 -0
  11. package/dist/_virtual/compile.js +5 -0
  12. package/dist/_virtual/compile.js.map +1 -0
  13. package/dist/_virtual/compile2.js +5 -0
  14. package/dist/_virtual/compile2.js.map +1 -0
  15. package/dist/_virtual/decode-data-html.js +5 -0
  16. package/dist/_virtual/decode-data-html.js.map +1 -0
  17. package/dist/_virtual/decode-data-xml.js +5 -0
  18. package/dist/_virtual/decode-data-xml.js.map +1 -0
  19. package/dist/_virtual/decode.js +5 -0
  20. package/dist/_virtual/decode.js.map +1 -0
  21. package/dist/_virtual/decode_codepoint.js +5 -0
  22. package/dist/_virtual/decode_codepoint.js.map +1 -0
  23. package/dist/_virtual/encode-html.js +5 -0
  24. package/dist/_virtual/encode-html.js.map +1 -0
  25. package/dist/_virtual/encode.js +5 -0
  26. package/dist/_virtual/encode.js.map +1 -0
  27. package/dist/_virtual/escape.js +5 -0
  28. package/dist/_virtual/escape.js.map +1 -0
  29. package/dist/_virtual/feeds.js +5 -0
  30. package/dist/_virtual/feeds.js.map +1 -0
  31. package/dist/_virtual/filters.js +5 -0
  32. package/dist/_virtual/filters.js.map +1 -0
  33. package/dist/_virtual/foreignNames.js +5 -0
  34. package/dist/_virtual/foreignNames.js.map +1 -0
  35. package/dist/_virtual/general.js +5 -0
  36. package/dist/_virtual/general.js.map +1 -0
  37. package/dist/_virtual/he.js +5 -0
  38. package/dist/_virtual/he.js.map +1 -0
  39. package/dist/_virtual/helpers.js +5 -0
  40. package/dist/_virtual/helpers.js.map +1 -0
  41. package/dist/_virtual/html.js +5 -0
  42. package/dist/_virtual/html.js.map +1 -0
  43. package/dist/_virtual/index.js +6 -0
  44. package/dist/_virtual/index.js.map +1 -0
  45. package/dist/_virtual/index10.js +5 -0
  46. package/dist/_virtual/index10.js.map +1 -0
  47. package/dist/_virtual/index11.js +5 -0
  48. package/dist/_virtual/index11.js.map +1 -0
  49. package/dist/_virtual/index2.js +5 -0
  50. package/dist/_virtual/index2.js.map +1 -0
  51. package/dist/_virtual/index3.js +5 -0
  52. package/dist/_virtual/index3.js.map +1 -0
  53. package/dist/_virtual/index4.js +5 -0
  54. package/dist/_virtual/index4.js.map +1 -0
  55. package/dist/_virtual/index5.js +7 -0
  56. package/dist/_virtual/index5.js.map +1 -0
  57. package/dist/_virtual/index6.js +5 -0
  58. package/dist/_virtual/index6.js.map +1 -0
  59. package/dist/_virtual/index7.js +5 -0
  60. package/dist/_virtual/index7.js.map +1 -0
  61. package/dist/_virtual/index8.js +5 -0
  62. package/dist/_virtual/index8.js.map +1 -0
  63. package/dist/_virtual/index9.js +5 -0
  64. package/dist/_virtual/index9.js.map +1 -0
  65. package/dist/_virtual/legacy.js +5 -0
  66. package/dist/_virtual/legacy.js.map +1 -0
  67. package/dist/_virtual/manipulation.js +5 -0
  68. package/dist/_virtual/manipulation.js.map +1 -0
  69. package/dist/_virtual/matcher.js +5 -0
  70. package/dist/_virtual/matcher.js.map +1 -0
  71. package/dist/_virtual/node.js +5 -0
  72. package/dist/_virtual/node.js.map +1 -0
  73. package/dist/_virtual/node2.js +5 -0
  74. package/dist/_virtual/node2.js.map +1 -0
  75. package/dist/_virtual/parse.js +5 -0
  76. package/dist/_virtual/parse.js.map +1 -0
  77. package/dist/_virtual/parse2.js +5 -0
  78. package/dist/_virtual/parse2.js.map +1 -0
  79. package/dist/_virtual/pseudos.js +5 -0
  80. package/dist/_virtual/pseudos.js.map +1 -0
  81. package/dist/_virtual/querying.js +5 -0
  82. package/dist/_virtual/querying.js.map +1 -0
  83. package/dist/_virtual/sort.js +5 -0
  84. package/dist/_virtual/sort.js.map +1 -0
  85. package/dist/_virtual/stringify.js +5 -0
  86. package/dist/_virtual/stringify.js.map +1 -0
  87. package/dist/_virtual/subselects.js +5 -0
  88. package/dist/_virtual/subselects.js.map +1 -0
  89. package/dist/_virtual/text.js +5 -0
  90. package/dist/_virtual/text.js.map +1 -0
  91. package/dist/_virtual/traversal.js +5 -0
  92. package/dist/_virtual/traversal.js.map +1 -0
  93. package/dist/_virtual/type.js +5 -0
  94. package/dist/_virtual/type.js.map +1 -0
  95. package/dist/_virtual/valid.js +5 -0
  96. package/dist/_virtual/valid.js.map +1 -0
  97. package/dist/_virtual/void-tag.js +5 -0
  98. package/dist/_virtual/void-tag.js.map +1 -0
  99. package/dist/cli/commands/fulltext/attach.js +1 -1
  100. package/dist/cli/commands/fulltext/attach.js.map +1 -1
  101. package/dist/cli/commands/fulltext/check.d.ts +1 -2
  102. package/dist/cli/commands/fulltext/check.d.ts.map +1 -1
  103. package/dist/cli/commands/fulltext/check.js +4 -2
  104. package/dist/cli/commands/fulltext/check.js.map +1 -1
  105. package/dist/cli/commands/fulltext/convert.d.ts.map +1 -1
  106. package/dist/cli/commands/fulltext/convert.js +8 -8
  107. package/dist/cli/commands/fulltext/convert.js.map +1 -1
  108. package/dist/cli/commands/fulltext/fetch.d.ts.map +1 -1
  109. package/dist/cli/commands/fulltext/fetch.js +10 -6
  110. package/dist/cli/commands/fulltext/fetch.js.map +1 -1
  111. package/dist/cli/commands/fulltext/index.d.ts.map +1 -1
  112. package/dist/cli/commands/fulltext/index.js +2 -0
  113. package/dist/cli/commands/fulltext/index.js.map +1 -1
  114. package/dist/cli/commands/fulltext/init.d.ts.map +1 -1
  115. package/dist/cli/commands/fulltext/init.js +6 -5
  116. package/dist/cli/commands/fulltext/init.js.map +1 -1
  117. package/dist/cli/commands/fulltext/pending.d.ts +1 -1
  118. package/dist/cli/commands/fulltext/pending.d.ts.map +1 -1
  119. package/dist/cli/commands/fulltext/pending.js +4 -2
  120. package/dist/cli/commands/fulltext/pending.js.map +1 -1
  121. package/dist/cli/commands/fulltext/status.d.ts.map +1 -1
  122. package/dist/cli/commands/fulltext/status.js +4 -2
  123. package/dist/cli/commands/fulltext/status.js.map +1 -1
  124. package/dist/cli/commands/fulltext/sync.d.ts.map +1 -1
  125. package/dist/cli/commands/fulltext/sync.js +6 -2
  126. package/dist/cli/commands/fulltext/sync.js.map +1 -1
  127. package/dist/cli/commands/review/types.d.ts +1 -1
  128. package/dist/cli/commands/review/types.d.ts.map +1 -1
  129. package/dist/cli/commands/review/types.js.map +1 -1
  130. package/dist/config/schema.d.ts +2 -0
  131. package/dist/config/schema.d.ts.map +1 -1
  132. package/dist/config/schema.js +6 -0
  133. package/dist/config/schema.js.map +1 -1
  134. package/dist/{fulltext → integration}/attach-shared.d.ts +2 -2
  135. package/dist/integration/attach-shared.d.ts.map +1 -0
  136. package/dist/integration/attach-shared.js.map +1 -0
  137. package/dist/integration/fulltext-attach.js +1 -1
  138. package/dist/integration/fulltext-attach.js.map +1 -1
  139. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/citation-key.js +1 -1
  140. package/dist/node_modules/@ncukondo/academic-fulltext/dist/citation-key.js.map +1 -0
  141. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/arxiv-html-parser.js +434 -0
  142. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/arxiv-html-parser.js.map +1 -0
  143. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/index.js +93 -0
  144. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/index.js.map +1 -0
  145. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/jats-parser.js +1060 -0
  146. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/jats-parser.js.map +1 -0
  147. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/convert/markdown-writer.js +146 -117
  148. package/dist/node_modules/@ncukondo/academic-fulltext/dist/convert/markdown-writer.js.map +1 -0
  149. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/discovery/arxiv.js +8 -1
  150. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/arxiv.js.map +1 -0
  151. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/discovery/core.js +6 -3
  152. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/core.js.map +1 -0
  153. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/index.js +139 -0
  154. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/index.js.map +1 -0
  155. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/ncbi-id-converter.js +46 -0
  156. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/ncbi-id-converter.js.map +1 -0
  157. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/discovery/pmc.js +8 -4
  158. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/pmc.js.map +1 -0
  159. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/discovery/unpaywall.js +43 -9
  160. package/dist/node_modules/@ncukondo/academic-fulltext/dist/discovery/unpaywall.js.map +1 -0
  161. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/arxiv-html.js +48 -0
  162. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/arxiv-html.js.map +1 -0
  163. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/downloader.js +64 -0
  164. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/downloader.js.map +1 -0
  165. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/orchestrator.js +236 -0
  166. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/orchestrator.js.map +1 -0
  167. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/download/pmc-xml.js +2 -1
  168. package/dist/node_modules/@ncukondo/academic-fulltext/dist/download/pmc-xml.js.map +1 -0
  169. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/meta.js +15 -10
  170. package/dist/node_modules/@ncukondo/academic-fulltext/dist/meta.js.map +1 -0
  171. package/dist/node_modules/@ncukondo/academic-fulltext/dist/paths.js.map +1 -0
  172. package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/readme.js +8 -4
  173. package/dist/node_modules/@ncukondo/academic-fulltext/dist/readme.js.map +1 -0
  174. package/dist/node_modules/boolbase/index.js +19 -0
  175. package/dist/node_modules/boolbase/index.js.map +1 -0
  176. package/dist/node_modules/css-select/lib/attributes.js +203 -0
  177. package/dist/node_modules/css-select/lib/attributes.js.map +1 -0
  178. package/dist/node_modules/css-select/lib/compile.js +141 -0
  179. package/dist/node_modules/css-select/lib/compile.js.map +1 -0
  180. package/dist/node_modules/css-select/lib/general.js +154 -0
  181. package/dist/node_modules/css-select/lib/general.js.map +1 -0
  182. package/dist/node_modules/css-select/lib/index.js +128 -0
  183. package/dist/node_modules/css-select/lib/index.js.map +1 -0
  184. package/dist/node_modules/css-select/lib/pseudo-selectors/aliases.js +40 -0
  185. package/dist/node_modules/css-select/lib/pseudo-selectors/aliases.js.map +1 -0
  186. package/dist/node_modules/css-select/lib/pseudo-selectors/filters.js +163 -0
  187. package/dist/node_modules/css-select/lib/pseudo-selectors/filters.js.map +1 -0
  188. package/dist/node_modules/css-select/lib/pseudo-selectors/index.js +71 -0
  189. package/dist/node_modules/css-select/lib/pseudo-selectors/index.js.map +1 -0
  190. package/dist/node_modules/css-select/lib/pseudo-selectors/pseudos.js +93 -0
  191. package/dist/node_modules/css-select/lib/pseudo-selectors/pseudos.js.map +1 -0
  192. package/dist/node_modules/css-select/lib/pseudo-selectors/subselects.js +111 -0
  193. package/dist/node_modules/css-select/lib/pseudo-selectors/subselects.js.map +1 -0
  194. package/dist/node_modules/css-select/lib/sort.js +78 -0
  195. package/dist/node_modules/css-select/lib/sort.js.map +1 -0
  196. package/dist/node_modules/css-what/lib/es/index.js +12 -0
  197. package/dist/node_modules/css-what/lib/es/index.js.map +1 -0
  198. package/dist/node_modules/css-what/lib/es/parse.js +349 -0
  199. package/dist/node_modules/css-what/lib/es/parse.js.map +1 -0
  200. package/dist/node_modules/css-what/lib/es/stringify.js +102 -0
  201. package/dist/node_modules/css-what/lib/es/stringify.js.map +1 -0
  202. package/dist/node_modules/css-what/lib/es/types.js +37 -0
  203. package/dist/node_modules/css-what/lib/es/types.js.map +1 -0
  204. package/dist/node_modules/dom-serializer/lib/foreignNames.js +117 -0
  205. package/dist/node_modules/dom-serializer/lib/foreignNames.js.map +1 -0
  206. package/dist/node_modules/dom-serializer/lib/index.js +207 -0
  207. package/dist/node_modules/dom-serializer/lib/index.js.map +1 -0
  208. package/dist/node_modules/dom-serializer/node_modules/entities/lib/decode.js +368 -0
  209. package/dist/node_modules/dom-serializer/node_modules/entities/lib/decode.js.map +1 -0
  210. package/dist/node_modules/dom-serializer/node_modules/entities/lib/decode_codepoint.js +70 -0
  211. package/dist/node_modules/dom-serializer/node_modules/entities/lib/decode_codepoint.js.map +1 -0
  212. package/dist/node_modules/dom-serializer/node_modules/entities/lib/encode.js +61 -0
  213. package/dist/node_modules/dom-serializer/node_modules/entities/lib/encode.js.map +1 -0
  214. package/dist/node_modules/dom-serializer/node_modules/entities/lib/escape.js +79 -0
  215. package/dist/node_modules/dom-serializer/node_modules/entities/lib/escape.js.map +1 -0
  216. package/dist/node_modules/dom-serializer/node_modules/entities/lib/generated/decode-data-html.js +18 -0
  217. package/dist/node_modules/dom-serializer/node_modules/entities/lib/generated/decode-data-html.js.map +1 -0
  218. package/dist/node_modules/dom-serializer/node_modules/entities/lib/generated/decode-data-xml.js +18 -0
  219. package/dist/node_modules/dom-serializer/node_modules/entities/lib/generated/decode-data-xml.js.map +1 -0
  220. package/dist/node_modules/dom-serializer/node_modules/entities/lib/generated/encode-html.js +19 -0
  221. package/dist/node_modules/dom-serializer/node_modules/entities/lib/generated/encode-html.js.map +1 -0
  222. package/dist/node_modules/dom-serializer/node_modules/entities/lib/index.js +139 -0
  223. package/dist/node_modules/dom-serializer/node_modules/entities/lib/index.js.map +1 -0
  224. package/dist/node_modules/domelementtype/lib/index.js +40 -0
  225. package/dist/node_modules/domelementtype/lib/index.js.map +1 -0
  226. package/dist/node_modules/domhandler/lib/index.js +167 -0
  227. package/dist/node_modules/domhandler/lib/index.js.map +1 -0
  228. package/dist/node_modules/domhandler/lib/node.js +439 -0
  229. package/dist/node_modules/domhandler/lib/node.js.map +1 -0
  230. package/dist/node_modules/domutils/lib/feeds.js +146 -0
  231. package/dist/node_modules/domutils/lib/feeds.js.map +1 -0
  232. package/dist/node_modules/domutils/lib/helpers.js +97 -0
  233. package/dist/node_modules/domutils/lib/helpers.js.map +1 -0
  234. package/dist/node_modules/domutils/lib/index.js +65 -0
  235. package/dist/node_modules/domutils/lib/index.js.map +1 -0
  236. package/dist/node_modules/domutils/lib/legacy.js +124 -0
  237. package/dist/node_modules/domutils/lib/legacy.js.map +1 -0
  238. package/dist/node_modules/domutils/lib/manipulation.js +107 -0
  239. package/dist/node_modules/domutils/lib/manipulation.js.map +1 -0
  240. package/dist/node_modules/domutils/lib/querying.js +102 -0
  241. package/dist/node_modules/domutils/lib/querying.js.map +1 -0
  242. package/dist/node_modules/domutils/lib/stringify.js +65 -0
  243. package/dist/node_modules/domutils/lib/stringify.js.map +1 -0
  244. package/dist/node_modules/domutils/lib/traversal.js +69 -0
  245. package/dist/node_modules/domutils/lib/traversal.js.map +1 -0
  246. package/dist/node_modules/he/he.js +256 -0
  247. package/dist/node_modules/he/he.js.map +1 -0
  248. package/dist/node_modules/node-html-parser/dist/back.js +16 -0
  249. package/dist/node_modules/node-html-parser/dist/back.js.map +1 -0
  250. package/dist/node_modules/node-html-parser/dist/index.js +48 -0
  251. package/dist/node_modules/node-html-parser/dist/index.js.map +1 -0
  252. package/dist/node_modules/node-html-parser/dist/matcher.js +112 -0
  253. package/dist/node_modules/node-html-parser/dist/matcher.js.map +1 -0
  254. package/dist/node_modules/node-html-parser/dist/nodes/comment.js +41 -0
  255. package/dist/node_modules/node-html-parser/dist/nodes/comment.js.map +1 -0
  256. package/dist/node_modules/node-html-parser/dist/nodes/html.js +1048 -0
  257. package/dist/node_modules/node-html-parser/dist/nodes/html.js.map +1 -0
  258. package/dist/node_modules/node-html-parser/dist/nodes/node.js +49 -0
  259. package/dist/node_modules/node-html-parser/dist/nodes/node.js.map +1 -0
  260. package/dist/node_modules/node-html-parser/dist/nodes/text.js +106 -0
  261. package/dist/node_modules/node-html-parser/dist/nodes/text.js.map +1 -0
  262. package/dist/node_modules/node-html-parser/dist/nodes/type.js +19 -0
  263. package/dist/node_modules/node-html-parser/dist/nodes/type.js.map +1 -0
  264. package/dist/node_modules/node-html-parser/dist/parse.js +20 -0
  265. package/dist/node_modules/node-html-parser/dist/parse.js.map +1 -0
  266. package/dist/node_modules/node-html-parser/dist/valid.js +19 -0
  267. package/dist/node_modules/node-html-parser/dist/valid.js.map +1 -0
  268. package/dist/node_modules/node-html-parser/dist/void-tag.js +36 -0
  269. package/dist/node_modules/node-html-parser/dist/void-tag.js.map +1 -0
  270. package/dist/node_modules/nth-check/lib/compile.js +76 -0
  271. package/dist/node_modules/nth-check/lib/compile.js.map +1 -0
  272. package/dist/node_modules/nth-check/lib/index.js +36 -0
  273. package/dist/node_modules/nth-check/lib/index.js.map +1 -0
  274. package/dist/node_modules/nth-check/lib/parse.js +69 -0
  275. package/dist/node_modules/nth-check/lib/parse.js.map +1 -0
  276. package/package.json +2 -2
  277. package/dist/fulltext/attach-shared.d.ts.map +0 -1
  278. package/dist/fulltext/attach-shared.js.map +0 -1
  279. package/dist/fulltext/citation-key.d.ts +0 -15
  280. package/dist/fulltext/citation-key.d.ts.map +0 -1
  281. package/dist/fulltext/citation-key.js.map +0 -1
  282. package/dist/fulltext/convert/index.d.ts +0 -20
  283. package/dist/fulltext/convert/index.d.ts.map +0 -1
  284. package/dist/fulltext/convert/index.js +0 -50
  285. package/dist/fulltext/convert/index.js.map +0 -1
  286. package/dist/fulltext/convert/jats-parser.d.ts +0 -36
  287. package/dist/fulltext/convert/jats-parser.d.ts.map +0 -1
  288. package/dist/fulltext/convert/jats-parser.js +0 -887
  289. package/dist/fulltext/convert/jats-parser.js.map +0 -1
  290. package/dist/fulltext/convert/markdown-writer.d.ts +0 -6
  291. package/dist/fulltext/convert/markdown-writer.d.ts.map +0 -1
  292. package/dist/fulltext/convert/markdown-writer.js.map +0 -1
  293. package/dist/fulltext/convert/types.d.ts +0 -141
  294. package/dist/fulltext/convert/types.d.ts.map +0 -1
  295. package/dist/fulltext/discovery/arxiv.d.ts +0 -11
  296. package/dist/fulltext/discovery/arxiv.d.ts.map +0 -1
  297. package/dist/fulltext/discovery/arxiv.js.map +0 -1
  298. package/dist/fulltext/discovery/core.d.ts +0 -11
  299. package/dist/fulltext/discovery/core.d.ts.map +0 -1
  300. package/dist/fulltext/discovery/core.js.map +0 -1
  301. package/dist/fulltext/discovery/index.d.ts +0 -28
  302. package/dist/fulltext/discovery/index.d.ts.map +0 -1
  303. package/dist/fulltext/discovery/index.js +0 -75
  304. package/dist/fulltext/discovery/index.js.map +0 -1
  305. package/dist/fulltext/discovery/pmc.d.ts +0 -19
  306. package/dist/fulltext/discovery/pmc.d.ts.map +0 -1
  307. package/dist/fulltext/discovery/pmc.js.map +0 -1
  308. package/dist/fulltext/discovery/unpaywall.d.ts +0 -11
  309. package/dist/fulltext/discovery/unpaywall.d.ts.map +0 -1
  310. package/dist/fulltext/discovery/unpaywall.js.map +0 -1
  311. package/dist/fulltext/download/downloader.d.ts +0 -21
  312. package/dist/fulltext/download/downloader.d.ts.map +0 -1
  313. package/dist/fulltext/download/downloader.js +0 -59
  314. package/dist/fulltext/download/downloader.js.map +0 -1
  315. package/dist/fulltext/download/orchestrator.d.ts +0 -33
  316. package/dist/fulltext/download/orchestrator.d.ts.map +0 -1
  317. package/dist/fulltext/download/orchestrator.js +0 -125
  318. package/dist/fulltext/download/orchestrator.js.map +0 -1
  319. package/dist/fulltext/download/pmc-xml.d.ts +0 -13
  320. package/dist/fulltext/download/pmc-xml.d.ts.map +0 -1
  321. package/dist/fulltext/download/pmc-xml.js.map +0 -1
  322. package/dist/fulltext/meta.d.ts +0 -25
  323. package/dist/fulltext/meta.d.ts.map +0 -1
  324. package/dist/fulltext/meta.js.map +0 -1
  325. package/dist/fulltext/paths.d.ts +0 -12
  326. package/dist/fulltext/paths.d.ts.map +0 -1
  327. package/dist/fulltext/paths.js.map +0 -1
  328. package/dist/fulltext/readme.d.ts +0 -4
  329. package/dist/fulltext/readme.d.ts.map +0 -1
  330. package/dist/fulltext/readme.js.map +0 -1
  331. package/dist/fulltext/types.d.ts +0 -90
  332. package/dist/fulltext/types.d.ts.map +0 -1
  333. /package/dist/{fulltext → integration}/attach-shared.js +0 -0
  334. /package/dist/{fulltext → node_modules/@ncukondo/academic-fulltext/dist}/paths.js +0 -0
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@@ -1,5 +1,4 @@
1
- import { DiscoveryConfig } from '../../../fulltext/discovery/index';
2
- import { OAStatus } from '../../../fulltext/types';
1
+ import { DiscoveryConfig, OAStatus } from '@ncukondo/academic-fulltext';
3
2
  export interface FulltextCheckOptions {
4
3
  sessionDir: string;
5
4
  config: DiscoveryConfig;
@@ -1 +1 @@
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