@ncukondo/reference-manager 0.7.1 → 0.9.0

package/dist/core/library.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"library.d.ts","sourceRoot":"","sources":["../../src/core/library.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAChD,OAAO,KAAK,EACV,WAAW,EACX,QAAQ,EACR,aAAa,EACb,YAAY,EACZ,aAAa,EACb,YAAY,EACb,MAAM,wBAAwB,CAAC;AAIhC,YAAY,EACV,WAAW,EACX,cAAc,EACd,QAAQ,EACR,aAAa,EACb,YAAY,GACb,MAAM,wBAAwB,CAAC;AAEhC;;;GAGG;AACH,qBAAa,OAAQ,YAAW,QAAQ;IACtC,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,UAAU,CAAmB;IACrC,OAAO,CAAC,WAAW,CAAuB;IAG1C,OAAO,CAAC,SAAS,CAAqC;IACtD,OAAO,CAAC,OAAO,CAAqC;IACpD,OAAO,CAAC,QAAQ,CAAqC;IACrD,OAAO,CAAC,SAAS,CAAqC;IACtD,OAAO,CAAC,SAAS,CAAqC;IAEtD,OAAO;IAWP;;;OAGG;WACU,IAAI,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAiBrD;;OAEG;IACG,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAO3B;;;;OAIG;IACG,MAAM,IAAI,OAAO,CAAC,OAAO,CAAC;IA8BhC;;;;OAIG;IACG,GAAG,CAAC,IAAI,EAAE,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC;IAe1C;;;;;OAKG;IACG,MAAM,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC;IA4BpF;;;;;;OAMG;IACG,MAAM,CACV,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,EACzB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC;IA4BxB;;;;;OAKG;IACG,IAAI,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,GAAE,WAAgB,GAAG,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC;IAyBvF;;OAEG;IACG,MAAM,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;IAIlC;;OAEG;IACH,WAAW,IAAI,MAAM;IAIrB;;;OAGG;IACH,cAAc,IAAI,MAAM,GAAG,IAAI;IAI/B;;OAEG;IACH,OAAO,CAAC,YAAY;IA0BpB;;OAEG;IACH,OAAO,CAAC,eAAe;IAUvB;;;OAGG;IACH,OAAO,CAAC,eAAe;IAwCvB;;OAEG;IACH,OAAO,CAAC,YAAY;IA0BpB;;OAEG;IACH,OAAO,CAAC,gBAAgB;IAoBxB;;OAEG;IACH,OAAO,CAAC,iBAAiB;IAoBzB;;;OAGG;IACH,OAAO,CAAC,cAAc;IAatB;;OAEG;IACH,OAAO,CAAC,kBAAkB;CAgB3B"}
+{"version":3,"file":"library.d.ts","sourceRoot":"","sources":["../../src/core/library.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAChD,OAAO,KAAK,EACV,WAAW,EACX,QAAQ,EACR,aAAa,EACb,YAAY,EACZ,aAAa,EACb,YAAY,EACb,MAAM,wBAAwB,CAAC;AAIhC,YAAY,EACV,WAAW,EACX,cAAc,EACd,QAAQ,EACR,aAAa,EACb,YAAY,GACb,MAAM,wBAAwB,CAAC;AAEhC;;;GAGG;AACH,qBAAa,OAAQ,YAAW,QAAQ;IACtC,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,UAAU,CAAmB;IACrC,OAAO,CAAC,WAAW,CAAuB;IAG1C,OAAO,CAAC,SAAS,CAAqC;IACtD,OAAO,CAAC,OAAO,CAAqC;IACpD,OAAO,CAAC,QAAQ,CAAqC;IACrD,OAAO,CAAC,SAAS,CAAqC;IACtD,OAAO,CAAC,SAAS,CAAqC;IAEtD,OAAO;IAWP;;;OAGG;WACU,IAAI,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAiBrD;;OAEG;IACG,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAO3B;;;;OAIG;IACG,MAAM,IAAI,OAAO,CAAC,OAAO,CAAC;IA8BhC;;;;OAIG;IACG,GAAG,CAAC,IAAI,EAAE,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC;IAe1C;;;;;OAKG;IACG,MAAM,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC;IA4BpF;;;;;;OAMG;IACG,MAAM,CACV,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,EACzB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC;IA4BxB;;;;;OAKG;IACG,IAAI,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,GAAE,WAAgB,GAAG,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC;IAyBvF;;OAEG;IACG,MAAM,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;IAIlC;;OAEG;IACH,WAAW,IAAI,MAAM;IAIrB;;;OAGG;IACH,cAAc,IAAI,MAAM,GAAG,IAAI;IAI/B;;OAEG;IACH,OAAO,CAAC,YAAY;IA0BpB;;OAEG;IACH,OAAO,CAAC,eAAe;IAUvB;;;OAGG;IACH,OAAO,CAAC,eAAe;IAwCvB;;OAEG;IACH,OAAO,CAAC,YAAY;IA2BpB;;OAEG;IACH,OAAO,CAAC,gBAAgB;IAoBxB;;OAEG;IACH,OAAO,CAAC,iBAAiB;IAoBzB;;;OAGG;IACH,OAAO,CAAC,cAAc;IAatB;;OAEG;IACH,OAAO,CAAC,kBAAkB;CAgB3B"}

package/dist/features/duplicate/types.d.ts

@@ -5,7 +5,7 @@ import type { CslItem } from "../../core/csl-json/types.js";
 /**
  * Type of duplicate match
  */
-export type DuplicateType = "doi" | "pmid" | "isbn" | "title-author-year";
+export type DuplicateType = "doi" | "pmid" | "isbn" | "isbn-title" | "title-author-year";
 /**
  * A single duplicate match result
  */

package/dist/features/duplicate/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/features/duplicate/types.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAE5D;;GAEG;AACH,MAAM,MAAM,aAAa,GAAG,KAAK,GAAG,MAAM,GAAG,MAAM,GAAG,mBAAmB,CAAC;AAE1E;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B;;OAEG;IACH,IAAI,EAAE,aAAa,CAAC;IAEpB;;OAEG;IACH,QAAQ,EAAE,OAAO,CAAC;IAElB;;OAEG;IACH,OAAO,CAAC,EAAE;QACR,GAAG,CAAC,EAAE,MAAM,CAAC;QACb,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,iBAAiB,CAAC,EAAE,MAAM,CAAC;QAC3B,IAAI,CAAC,EAAE,MAAM,CAAC;KACf,CAAC;CACH;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B;;OAEG;IACH,WAAW,EAAE,OAAO,CAAC;IAErB;;OAEG;IACH,OAAO,EAAE,cAAc,EAAE,CAAC;CAC3B"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/features/duplicate/types.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAE5D;;GAEG;AACH,MAAM,MAAM,aAAa,GAAG,KAAK,GAAG,MAAM,GAAG,MAAM,GAAG,YAAY,GAAG,mBAAmB,CAAC;AAEzF;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B;;OAEG;IACH,IAAI,EAAE,aAAa,CAAC;IAEpB;;OAEG;IACH,QAAQ,EAAE,OAAO,CAAC;IAElB;;OAEG;IACH,OAAO,CAAC,EAAE;QACR,GAAG,CAAC,EAAE,MAAM,CAAC;QACb,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,iBAAiB,CAAC,EAAE,MAAM,CAAC;QAC3B,IAAI,CAAC,EAAE,MAAM,CAAC;KACf,CAAC;CACH;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B;;OAEG;IACH,WAAW,EAAE,OAAO,CAAC;IAErB;;OAEG;IACH,OAAO,EAAE,cAAc,EAAE,CAAC;CAC3B"}

package/dist/features/import/detector.d.ts

@@ -10,7 +10,7 @@
 /**
  * Supported input formats
  */
-export type InputFormat = "json" | "bibtex" | "ris" | "pmid" | "doi" | "isbn" | "identifiers" | "unknown";
+export type InputFormat = "json" | "bibtex" | "ris" | "nbib" | "pmid" | "doi" | "isbn" | "identifiers" | "unknown";
 /**
  * Detect the format of the given input
  *

package/dist/features/import/detector.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"detector.d.ts","sourceRoot":"","sources":["../../../src/features/import/detector.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAIH;;GAEG;AACH,MAAM,MAAM,WAAW,GACnB,MAAM,GACN,QAAQ,GACR,KAAK,GACL,MAAM,GACN,KAAK,GACL,MAAM,GACN,aAAa,GACb,SAAS,CAAC;AAqBd;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAwBzE;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,WAAW,CAW5D;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAqB5D;AAkCD;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,KAAK,GAAG,MAAM,GAAG,SAAS,CAiBzF;AAED;;GAEG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAW5C;AA0BD;;GAEG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAc7C;AAED;;;;;;GAMG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAgC7C"}
+{"version":3,"file":"detector.d.ts","sourceRoot":"","sources":["../../../src/features/import/detector.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAIH;;GAEG;AACH,MAAM,MAAM,WAAW,GACnB,MAAM,GACN,QAAQ,GACR,KAAK,GACL,MAAM,GACN,MAAM,GACN,KAAK,GACL,MAAM,GACN,aAAa,GACb,SAAS,CAAC;AAsBd;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAwBzE;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,WAAW,CAW5D;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CA0B5D;AAkCD;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,KAAK,GAAG,MAAM,GAAG,SAAS,CAiBzF;AAED;;GAEG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAW5C;AA0BD;;GAEG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAc7C;AAED;;;;;;GAMG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAgC7C"}

package/dist/features/import/fetcher.d.ts

@@ -14,6 +14,10 @@ export interface PubmedConfig {
     email?: string;
     apiKey?: string;
 }
+/**
+ * Categorized failure reasons for JSON output
+ */
+export type FailureReason = "not_found" | "fetch_error" | "parse_error" | "validation_error" | "unknown";
 /**
  * Result of fetching a single identifier
  */
@@ -23,6 +27,7 @@ export type FetchResult = {
 } | {
     success: false;
     error: string;
+    reason: FailureReason;
 };
 /**
  * Result of fetching a PMID (includes pmid for tracking)
@@ -35,6 +40,7 @@ export type PmidFetchResult = {
     pmid: string;
     success: false;
     error: string;
+    reason: FailureReason;
 };
 /**
  * Results of fetching multiple PMIDs

package/dist/features/import/fetcher.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"fetcher.d.ts","sourceRoot":"","sources":["../../../src/features/import/fetcher.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,yBAAyB,CAAC;AACjC,OAAO,0BAA0B,CAAC;AAClC,OAAO,EAAE,KAAK,OAAO,EAAiB,MAAM,8BAA8B,CAAC;AAY3E;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED;;GAEG;AACH,MAAM,MAAM,WAAW,GAAG;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,OAAO,CAAA;CAAE,GAAG;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAE/F;;GAEG;AACH,MAAM,MAAM,eAAe,GACvB;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,OAAO,CAAA;CAAE,GAC9C;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAEpD;;GAEG;AACH,MAAM,MAAM,YAAY,GAAG,eAAe,EAAE,CAAC;AAiG7C,wBAAsB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,MAAM,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CA+C7F;AAED;;;;GAIG;AACH,wBAAsB,QAAQ,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CA0ChE;AAQD;;;;;GAKG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CA0ClE"}
+{"version":3,"file":"fetcher.d.ts","sourceRoot":"","sources":["../../../src/features/import/fetcher.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,yBAAyB,CAAC;AACjC,OAAO,0BAA0B,CAAC;AAClC,OAAO,EAAE,KAAK,OAAO,EAAiB,MAAM,8BAA8B,CAAC;AAY3E;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED;;GAEG;AACH,MAAM,MAAM,aAAa,GACrB,WAAW,GACX,aAAa,GACb,aAAa,GACb,kBAAkB,GAClB,SAAS,CAAC;AAEd;;GAEG;AACH,MAAM,MAAM,WAAW,GACnB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,OAAO,CAAA;CAAE,GAChC;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,aAAa,CAAA;CAAE,CAAC;AAE7D;;GAEG;AACH,MAAM,MAAM,eAAe,GACvB;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,OAAO,CAAA;CAAE,GAC9C;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,aAAa,CAAA;CAAE,CAAC;AAE3E;;GAEG;AACH,MAAM,MAAM,YAAY,GAAG,eAAe,EAAE,CAAC;AAmG7C,wBAAsB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,MAAM,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CAiD7F;AAED;;;;GAIG;AACH,wBAAsB,QAAQ,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CA8ChE;AAQD;;;;;GAKG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CA8ClE"}

package/dist/features/import/importer.d.ts

@@ -6,7 +6,8 @@
  */
 import type { CslItem } from "../../core/csl-json/types.js";
 import type { InputFormat } from "./detector.js";
-import type { PubmedConfig } from "./fetcher.js";
+import type { FailureReason, PubmedConfig } from "./fetcher.js";
+export type { FailureReason } from "./fetcher.js";
 /**
  * Result of importing a single item
  */
@@ -18,6 +19,7 @@ export type ImportItemResult = {
     success: false;
     error: string;
     source: string;
+    reason: FailureReason;
 };
 /**
  * Result of an import operation

package/dist/features/import/importer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"importer.d.ts","sourceRoot":"","sources":["../../../src/features/import/importer.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAW5D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAEjD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAIjD;;GAEG;AACH,MAAM,MAAM,gBAAgB,GACxB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,OAAO,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GAChD;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAEtD;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,OAAO,EAAE,gBAAgB,EAAE,CAAC;CAC7B;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,YAAY,CAAC,EAAE,YAAY,CAAC;CAC7B;AAqOD;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,WAAW,GAAG,MAAM,EAC5B,QAAQ,EAAE,aAAa,GACtB,OAAO,CAAC,YAAY,CAAC,CAuCvB;AAED;;;;;;GAMG;AACH,wBAAsB,qBAAqB,CACzC,WAAW,EAAE,MAAM,EAAE,EACrB,OAAO,EAAE,aAAa,GACrB,OAAO,CAAC,YAAY,CAAC,CA2BvB;AAED;;GAEG;AACH,MAAM,WAAW,mBAAoB,SAAQ,aAAa;IACxD,oDAAoD;IACpD,MAAM,CAAC,EAAE,WAAW,GAAG,MAAM,CAAC;IAC9B,gFAAgF;IAChF,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAuGD,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,MAAM,EAAE,EAChB,OAAO,EAAE,mBAAmB,GAC3B,OAAO,CAAC,YAAY,CAAC,CAiCvB"}
+{"version":3,"file":"importer.d.ts","sourceRoot":"","sources":["../../../src/features/import/importer.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAW5D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAEjD,OAAO,KAAK,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAKhE,YAAY,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAElD;;GAEG;AACH,MAAM,MAAM,gBAAgB,GACxB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,OAAO,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GAChD;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,aAAa,CAAA;CAAE,CAAC;AAE7E;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,OAAO,EAAE,gBAAgB,EAAE,CAAC;CAC7B;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,YAAY,CAAC,EAAE,YAAY,CAAC;CAC7B;AAmSD;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,WAAW,GAAG,MAAM,EAC5B,QAAQ,EAAE,aAAa,GACtB,OAAO,CAAC,YAAY,CAAC,CA2CvB;AAED;;;;;;GAMG;AACH,wBAAsB,qBAAqB,CACzC,WAAW,EAAE,MAAM,EAAE,EACrB,OAAO,EAAE,aAAa,GACrB,OAAO,CAAC,YAAY,CAAC,CA2BvB;AAED;;GAEG;AACH,MAAM,WAAW,mBAAoB,SAAQ,aAAa;IACxD,oDAAoD;IACpD,MAAM,CAAC,EAAE,WAAW,GAAG,MAAM,CAAC;IAC9B,gFAAgF;IAChF,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAyGD,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,MAAM,EAAE,EAChB,OAAO,EAAE,mBAAmB,GAC3B,OAAO,CAAC,YAAY,CAAC,CAiCvB"}

package/dist/features/import/parser.d.ts

@@ -30,4 +30,20 @@ export declare function parseBibtex(content: string): ParseResult;
  * @returns Parse result with CSL-JSON items
  */
 export declare function parseRis(content: string): ParseResult;
+/**
+ * Convert NBIB (PubMed MEDLINE) format to RIS format
+ *
+ * @param content - NBIB content string
+ * @returns RIS format string
+ */
+export declare function convertNbibToRis(content: string): string;
+/**
+ * Parse NBIB (PubMed MEDLINE) content to CSL-JSON
+ *
+ * Converts NBIB to RIS format first, then parses with citation-js
+ *
+ * @param content - NBIB content string
+ * @returns Parse result with CSL-JSON items
+ */
+export declare function parseNbib(content: string): ParseResult;
 //# sourceMappingURL=parser.d.ts.map

package/dist/features/import/parser.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"parser.d.ts","sourceRoot":"","sources":["../../../src/features/import/parser.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,4BAA4B,CAAC;AACpC,OAAO,yBAAyB,CAAC;AACjC,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAE5D;;GAEG;AACH,MAAM,MAAM,WAAW,GAAG;IACxB,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,OAAO,EAAE,CAAC;IACjB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAExD;AAED;;;;;GAKG;AACH,wBAAgB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAErD"}
+{"version":3,"file":"parser.d.ts","sourceRoot":"","sources":["../../../src/features/import/parser.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,4BAA4B,CAAC;AACpC,OAAO,yBAAyB,CAAC;AACjC,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAE5D;;GAEG;AACH,MAAM,MAAM,WAAW,GAAG;IACxB,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,OAAO,EAAE,CAAC;IACjB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAExD;AAED;;;;;GAKG;AACH,wBAAgB,QAAQ,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAErD;AA0JD;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAaxD;AAED;;;;;;;GAOG;AACH,wBAAgB,SAAS,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAqBtD"}

package/dist/features/operations/add.d.ts

@@ -1,6 +1,7 @@
 import type { ILibrary } from "../../core/library-interface.js";
 import type { InputFormat } from "../import/detector.js";
 import type { PubmedConfig } from "../import/fetcher.js";
+export type { FailureReason } from "../import/importer.js";
 /**
  * Options for adding references
  */
@@ -19,6 +20,7 @@ export interface AddReferencesOptions {
  */
 export interface AddedItem {
     id: string;
+    uuid: string;
     title: string;
     /** True if the ID was changed due to collision */
     idChanged?: boolean;
@@ -31,6 +33,7 @@ export interface AddedItem {
 export interface FailedItem {
     source: string;
     error: string;
+    reason: import("../import/importer.js").FailureReason;
 }
 /**
  * Information about a skipped duplicate
@@ -38,6 +41,7 @@ export interface FailedItem {
 export interface SkippedItem {
     source: string;
     existingId: string;
+    duplicateType: import("../duplicate/types.js").DuplicateType;
 }
 /**
  * Result of addReferences operation

package/dist/features/operations/add.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"add.d.ts","sourceRoot":"","sources":["../../../src/features/operations/add.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAEhE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AAOzD;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,+BAA+B;IAC/B,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,4CAA4C;IAC5C,MAAM,CAAC,EAAE,WAAW,GAAG,MAAM,CAAC;IAC9B,+BAA+B;IAC/B,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,gFAAgF;IAChF,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,kDAAkD;IAClD,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,8CAA8C;IAC9C,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,MAAM,EAAE,UAAU,EAAE,CAAC;IACrB,OAAO,EAAE,WAAW,EAAE,CAAC;CACxB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAsB,aAAa,CACjC,MAAM,EAAE,MAAM,EAAE,EAChB,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,mBAAmB,CAAC,CAwC9B"}
+{"version":3,"file":"add.d.ts","sourceRoot":"","sources":["../../../src/features/operations/add.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAEhE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AAQzD,YAAY,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAE3D;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,+BAA+B;IAC/B,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,4CAA4C;IAC5C,MAAM,CAAC,EAAE,WAAW,GAAG,MAAM,CAAC;IAC9B,+BAA+B;IAC/B,YAAY,CAAC,EAAE,YAAY,CAAC;IAC5B,gFAAgF;IAChF,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,kDAAkD;IAClD,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,8CAA8C;IAC9C,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,OAAO,uBAAuB,EAAE,aAAa,CAAC;CACvD;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,OAAO,uBAAuB,EAAE,aAAa,CAAC;CAC9D;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,MAAM,EAAE,UAAU,EAAE,CAAC;IACrB,OAAO,EAAE,WAAW,EAAE,CAAC;CACxB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAsB,aAAa,CACjC,MAAM,EAAE,MAAM,EAAE,EAChB,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,mBAAmB,CAAC,CAwC9B"}

package/dist/features/operations/fulltext/index.d.ts

@@ -6,4 +6,5 @@
 export { fulltextAttach, type FulltextAttachOptions, type FulltextAttachResult } from "./attach.js";
 export { fulltextGet, type FulltextGetOptions, type FulltextGetResult } from "./get.js";
 export { fulltextDetach, type FulltextDetachOptions, type FulltextDetachResult } from "./detach.js";
+export { fulltextOpen, type FulltextOpenOptions, type FulltextOpenResult } from "./open.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/features/operations/fulltext/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/features/operations/fulltext/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,cAAc,EAAE,KAAK,qBAAqB,EAAE,KAAK,oBAAoB,EAAE,MAAM,aAAa,CAAC;AACpG,OAAO,EAAE,WAAW,EAAE,KAAK,kBAAkB,EAAE,KAAK,iBAAiB,EAAE,MAAM,UAAU,CAAC;AACxF,OAAO,EAAE,cAAc,EAAE,KAAK,qBAAqB,EAAE,KAAK,oBAAoB,EAAE,MAAM,aAAa,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/features/operations/fulltext/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,cAAc,EAAE,KAAK,qBAAqB,EAAE,KAAK,oBAAoB,EAAE,MAAM,aAAa,CAAC;AACpG,OAAO,EAAE,WAAW,EAAE,KAAK,kBAAkB,EAAE,KAAK,iBAAiB,EAAE,MAAM,UAAU,CAAC;AACxF,OAAO,EAAE,cAAc,EAAE,KAAK,qBAAqB,EAAE,KAAK,oBAAoB,EAAE,MAAM,aAAa,CAAC;AACpG,OAAO,EAAE,YAAY,EAAE,KAAK,mBAAmB,EAAE,KAAK,kBAAkB,EAAE,MAAM,WAAW,CAAC"}

package/dist/features/operations/fulltext/open.d.ts

@@ -0,0 +1,36 @@
+/**
+ * Fulltext open operation
+ */
+import type { ILibrary, IdentifierType } from "../../../core/library-interface.js";
+import type { FulltextType } from "../../fulltext/index.js";
+/**
+ * Options for fulltextOpen operation
+ */
+export interface FulltextOpenOptions {
+    /** Reference identifier (id or uuid) */
+    identifier: string;
+    /** Specific type to open (pdf or markdown) */
+    type?: FulltextType | undefined;
+    /** Identifier type: 'id' (default), 'uuid', 'doi', 'pmid', or 'isbn' */
+    idType?: IdentifierType | undefined;
+    /** Directory for fulltext files */
+    fulltextDirectory: string;
+}
+/**
+ * Result of fulltextOpen operation
+ */
+export interface FulltextOpenResult {
+    success: boolean;
+    openedType?: FulltextType;
+    openedPath?: string;
+    error?: string;
+}
+/**
+ * Open fulltext file with system default application.
+ *
+ * @param library - The library containing the reference
+ * @param options - Open options
+ * @returns Result with opened file info
+ */
+export declare function fulltextOpen(library: ILibrary, options: FulltextOpenOptions): Promise<FulltextOpenResult>;
+//# sourceMappingURL=open.d.ts.map

package/dist/features/operations/fulltext/open.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"open.d.ts","sourceRoot":"","sources":["../../../../src/features/operations/fulltext/open.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,oCAAoC,CAAC;AAEnF,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,yBAAyB,CAAC;AAE5D;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,wCAAwC;IACxC,UAAU,EAAE,MAAM,CAAC;IACnB,8CAA8C;IAC9C,IAAI,CAAC,EAAE,YAAY,GAAG,SAAS,CAAC;IAChC,wEAAwE;IACxE,MAAM,CAAC,EAAE,cAAc,GAAG,SAAS,CAAC;IACpC,mCAAmC;IACnC,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAED;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,OAAO,EAAE,OAAO,CAAC;IACjB,UAAU,CAAC,EAAE,YAAY,CAAC;IAC1B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAgCD;;;;;;GAMG;AACH,wBAAsB,YAAY,CAChC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,mBAAmB,GAC3B,OAAO,CAAC,kBAAkB,CAAC,CA8C7B"}

package/dist/features/operations/index.d.ts

@@ -12,4 +12,6 @@ export type { SearchOperationOptions, SearchResult } from "./search.js";
 export type { ListOptions, ListResult } from "./list.js";
 export type { CiteOperationOptions, CiteResult, CiteItemResult } from "./cite.js";
 export type { AddReferencesOptions, AddReferencesResult } from "./add.js";
+export type { AddJsonOutput, RemoveJsonOutput, UpdateJsonOutput, } from "./json-output.js";
+export { formatAddJsonOutput, formatRemoveJsonOutput, formatUpdateJsonOutput, } from "./json-output.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/features/operations/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/features/operations/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAGH,YAAY,EACV,kBAAkB,EAClB,aAAa,EACb,YAAY,GACb,MAAM,yBAAyB,CAAC;AAGjC,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAG5D,YAAY,EAAE,sBAAsB,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AACxE,YAAY,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACzD,YAAY,EAAE,oBAAoB,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAClF,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/features/operations/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAGH,YAAY,EACV,kBAAkB,EAClB,aAAa,EACb,YAAY,GACb,MAAM,yBAAyB,CAAC;AAGjC,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAG5D,YAAY,EAAE,sBAAsB,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AACxE,YAAY,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACzD,YAAY,EAAE,oBAAoB,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAClF,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAG1E,YAAY,EACV,aAAa,EACb,gBAAgB,EAChB,gBAAgB,GACjB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACL,mBAAmB,EACnB,sBAAsB,EACtB,sBAAsB,GACvB,MAAM,kBAAkB,CAAC"}

package/dist/features/operations/json-output.d.ts

@@ -0,0 +1,93 @@
+/**
+ * JSON output formatters for add/remove/update commands
+ *
+ * This module provides machine-readable JSON output for external tool integration.
+ * The formatters are placed in the features layer to enable reuse by CLI, HTTP Server, and MCP Server.
+ */
+import type { CslItem } from "../../core/csl-json/types.js";
+import type { DuplicateType } from "../duplicate/types.js";
+import type { FailureReason } from "../import/importer.js";
+import type { AddReferencesResult } from "./add.js";
+import type { RemoveResult } from "./remove.js";
+import type { UpdateOperationResult } from "./update.js";
+export interface AddJsonOutputItem {
+    source: string;
+    id: string;
+    uuid: string;
+    title: string;
+    idChanged?: boolean;
+    originalId?: string;
+    item?: CslItem;
+}
+export interface SkippedJsonOutputItem {
+    source: string;
+    reason: "duplicate";
+    existingId: string;
+    duplicateType: DuplicateType;
+}
+export interface FailedJsonOutputItem {
+    source: string;
+    reason: FailureReason;
+    error: string;
+}
+export interface AddJsonOutput {
+    summary: {
+        total: number;
+        added: number;
+        skipped: number;
+        failed: number;
+    };
+    added: AddJsonOutputItem[];
+    skipped: SkippedJsonOutputItem[];
+    failed: FailedJsonOutputItem[];
+}
+export interface RemoveJsonOutput {
+    success: boolean;
+    id: string;
+    uuid?: string;
+    title?: string;
+    item?: CslItem;
+    error?: string;
+}
+export interface UpdateJsonOutput {
+    success: boolean;
+    id: string;
+    uuid?: string;
+    title?: string;
+    idChanged?: boolean;
+    previousId?: string;
+    before?: CslItem;
+    after?: CslItem;
+    error?: string;
+}
+export interface FormatAddJsonOptions {
+    /** Include full CSL-JSON data */
+    full?: boolean;
+    /** Map from added item ID to source string */
+    sources?: Map<string, string>;
+    /** Map from added item ID to CslItem (for --full) */
+    items?: Map<string, CslItem>;
+}
+/**
+ * Format add command result as JSON output
+ */
+export declare function formatAddJsonOutput(result: AddReferencesResult, options: FormatAddJsonOptions): AddJsonOutput;
+export interface FormatRemoveJsonOptions {
+    /** Include full CSL-JSON data */
+    full?: boolean;
+}
+/**
+ * Format remove command result as JSON output
+ */
+export declare function formatRemoveJsonOutput(result: RemoveResult, id: string, options: FormatRemoveJsonOptions): RemoveJsonOutput;
+export interface FormatUpdateJsonOptions {
+    /** Include full CSL-JSON data (before/after) */
+    full?: boolean;
+    /** The item before update (for --full) */
+    before?: CslItem;
+}
+/**
+ * Format update command result as JSON output
+ */
+export declare function formatUpdateJsonOutput(result: UpdateOperationResult, originalId: string, options: FormatUpdateJsonOptions): UpdateJsonOutput;
+//# sourceMappingURL=json-output.d.ts.map

package/dist/features/operations/json-output.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"json-output.d.ts","sourceRoot":"","sources":["../../../src/features/operations/json-output.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAC3D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAC3D,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AACpD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAChD,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,aAAa,CAAC;AAMzD,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,OAAO,CAAC;CAChB;AAED,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,WAAW,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,aAAa,CAAC;CAC9B;AAED,MAAM,WAAW,oBAAoB;IACnC,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,aAAa,CAAC;IACtB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE;QACP,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,OAAO,EAAE,MAAM,CAAC;QAChB,MAAM,EAAE,MAAM,CAAC;KAChB,CAAC;IACF,KAAK,EAAE,iBAAiB,EAAE,CAAC;IAC3B,OAAO,EAAE,qBAAqB,EAAE,CAAC;IACjC,MAAM,EAAE,oBAAoB,EAAE,CAAC;CAChC;AAMD,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,OAAO,CAAC;IACjB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAMD,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,OAAO,CAAC;IACjB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAMD,MAAM,WAAW,oBAAoB;IACnC,iCAAiC;IACjC,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,8CAA8C;IAC9C,OAAO,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,qDAAqD;IACrD,KAAK,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CAC9B;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,mBAAmB,EAC3B,OAAO,EAAE,oBAAoB,GAC5B,aAAa,CAkDf;AAED,MAAM,WAAW,uBAAuB;IACtC,iCAAiC;IACjC,IAAI,CAAC,EAAE,OAAO,CAAC;CAChB;AAED;;GAEG;AACH,wBAAgB,sBAAsB,CACpC,MAAM,EAAE,YAAY,EACpB,EAAE,EAAE,MAAM,EACV,OAAO,EAAE,uBAAuB,GAC/B,gBAAgB,CAwBlB;AAED,MAAM,WAAW,uBAAuB;IACtC,gDAAgD;IAChD,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,0CAA0C;IAC1C,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,wBAAgB,sBAAsB,CACpC,MAAM,EAAE,qBAAqB,EAC7B,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,uBAAuB,GAC/B,gBAAgB,CA2ClB"}

package/dist/features/operations/remove.d.ts

@@ -1,5 +1,6 @@
 import type { CslItem } from "../../core/csl-json/types.js";
 import type { ILibrary, IdentifierType } from "../../core/library-interface.js";
+import type { FulltextType } from "../fulltext/index.js";
 /**
  * Options for removeReference operation
  */
@@ -8,6 +9,10 @@ export interface RemoveOperationOptions {
     identifier: string;
     /** Identifier type: 'id' (default), 'uuid', 'doi', 'pmid', or 'isbn' */
     idType?: IdentifierType;
+    /** Directory containing fulltext files (required if deleteFulltext is true) */
+    fulltextDirectory?: string;
+    /** Whether to delete associated fulltext files */
+    deleteFulltext?: boolean;
 }
 /**
  * Result of removeReference operation
@@ -17,7 +22,13 @@ export interface RemoveResult {
     removed: boolean;
     /** The removed item (if found and removal succeeded) */
     removedItem?: CslItem;
+    /** Fulltext types that were deleted (only when deleteFulltext=true) */
+    deletedFulltextTypes?: FulltextType[];
 }
+/**
+ * Get fulltext attachment types from a CSL item.
+ */
+export declare function getFulltextAttachmentTypes(item: CslItem): FulltextType[];
 /**
  * Remove a reference from the library.
  *

package/dist/features/operations/remove.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"remove.d.ts","sourceRoot":"","sources":["../../../src/features/operations/remove.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEhF;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,2BAA2B;IAC3B,UAAU,EAAE,MAAM,CAAC;IACnB,wEAAwE;IACxE,MAAM,CAAC,EAAE,cAAc,CAAC;CACzB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,wCAAwC;IACxC,OAAO,EAAE,OAAO,CAAC;IACjB,wDAAwD;IACxD,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AAED;;;;;;GAMG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,YAAY,CAAC,CAUvB"}
+{"version":3,"file":"remove.d.ts","sourceRoot":"","sources":["../../../src/features/operations/remove.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAChF,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AAEzD;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,2BAA2B;IAC3B,UAAU,EAAE,MAAM,CAAC;IACnB,wEAAwE;IACxE,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,+EAA+E;IAC/E,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,kDAAkD;IAClD,cAAc,CAAC,EAAE,OAAO,CAAC;CAC1B;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,wCAAwC;IACxC,OAAO,EAAE,OAAO,CAAC;IACjB,wDAAwD;IACxD,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,uEAAuE;IACvE,oBAAoB,CAAC,EAAE,YAAY,EAAE,CAAC;CACvC;AAED;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,OAAO,GAAG,YAAY,EAAE,CAYxE;AA6BD;;;;;;GAMG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,YAAY,CAAC,CAyBvB"}

package/dist/index.js

@@ -1,12 +1,12 @@
-import { C as CslLibrarySchema, c as computeFileHash, a as computeHash, p as pickDefined, n as normalize, s as search, b as sortResults, t as tokenize, d as detectDuplicate } from "./chunks/file-watcher-D7oyc-9z.js";
-import { e, F, L, R, m, o, h, i, k, l, j, f, g, w } from "./chunks/file-watcher-D7oyc-9z.js";
+import { C as CslLibrarySchema, c as computeFileHash, a as computeHash, p as pickDefined, n as normalize, s as search, b as sortResults, t as tokenize, d as detectDuplicate } from "./chunks/file-watcher-DdhXSm1l.js";
+import { e, F, L, R, m, o, h, i, k, l, j, f, g, w } from "./chunks/file-watcher-DdhXSm1l.js";
 import { mkdir, readFile, copyFile, stat, unlink, readdir } from "node:fs/promises";
 import { dirname, join } from "node:path";
 import writeFileAtomicLib from "write-file-atomic";
 import { existsSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { fileURLToPath } from "node:url";
-import { b as backupConfigSchema, c as configSchema, d as defaultConfig, g as getDefaultBackupDirectory, a as getDefaultCurrentDirConfigFilename, e as getDefaultLibraryPath, f as getDefaultUserConfigPath, l as loadConfig, h as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-BItrdVWG.js";
+import { g as getOpenerCommand, o as openWithSystemApp, b as backupConfigSchema, c as configSchema, d as defaultConfig, a as getDefaultBackupDirectory, e as getDefaultCurrentDirConfigFilename, f as getDefaultLibraryPath, h as getDefaultUserConfigPath, l as loadConfig, i as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-C-bdImuO.js";
 function validateCslJson(data) {
   const parseResult = CslLibrarySchema.safeParse(data);
   if (!parseResult.success) {
@@ -119,7 +119,9 @@ const index$4 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.definePrope
   createLogger,
   ensureDirectoryExists,
   getBackupDirectory,
+  getOpenerCommand,
   listBackups,
+  openWithSystemApp,
   pickDefined,
   writeFileAtomic
 }, Symbol.toStringTag, { value: "Module" }));

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":["../src/core/csl-json/validator.ts","../src/utils/logger.ts","../src/utils/file.ts","../src/utils/backup.ts","../src/features/merge/three-way.ts"],"sourcesContent":["import { CslItemSchema, CslLibrarySchema } from \"./types\";\nimport type { CslItem, CslLibrary } from \"./types\";\n\n/**\n * Validate CSL-JSON library structure\n * @param data - Data to validate (can be any type)\n * @returns Validated CSL-JSON library\n * @throws Error if validation fails\n */\nexport function validateCslJson(data: unknown): CslLibrary {\n  const parseResult = CslLibrarySchema.safeParse(data);\n\n  if (!parseResult.success) {\n    throw new Error(`Invalid CSL-JSON structure: ${parseResult.error.message}`);\n  }\n\n  return parseResult.data;\n}\n\n/**\n * Validate a single CSL-JSON item\n * @param data - Data to validate (can be any type)\n * @returns Validation result with valid flag and errors\n */\nexport function validateCslItem(data: unknown): {\n  valid: boolean;\n  data?: CslItem;\n  errors?: string[];\n} {\n  const parseResult = CslItemSchema.safeParse(data);\n\n  if (!parseResult.success) {\n    return {\n      valid: false,\n      errors: parseResult.error.issues.map((issue) => issue.message),\n    };\n  }\n\n  return {\n    valid: true,\n    data: parseResult.data,\n  };\n}\n","export type LogLevel = \"silent\" | \"info\" | \"debug\";\n\nexport interface Logger {\n  info(...args: unknown[]): void;\n  debug(...args: unknown[]): void;\n  error(...args: unknown[]): void;\n}\n\nexport function createLogger(level: LogLevel = \"info\"): Logger {\n  const shouldLogInfo = level === \"info\" || level === \"debug\";\n  const shouldLogDebug = level === \"debug\";\n\n  function formatMessage(...args: unknown[]): string {\n    return `${args.map((arg) => String(arg)).join(\" \")}\\n`;\n  }\n\n  return {\n    info(...args: unknown[]): void {\n      if (shouldLogInfo) {\n        process.stderr.write(formatMessage(...args));\n      }\n    },\n\n    debug(...args: unknown[]): void {\n      if (shouldLogDebug) {\n        process.stderr.write(formatMessage(...args));\n      }\n    },\n\n    error(...args: unknown[]): void {\n      process.stderr.write(formatMessage(...args));\n    },\n  };\n}\n","import { mkdir } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\nimport writeFileAtomicLib from \"write-file-atomic\";\n\n/**\n * Write file atomically with parent directory creation\n */\nexport async function writeFileAtomic(filePath: string, content: string): Promise<void> {\n  await ensureDirectoryExists(dirname(filePath));\n  await writeFileAtomicLib(filePath, content, { encoding: \"utf-8\" });\n}\n\n/**\n * Ensure directory exists, creating it recursively if necessary\n */\nexport async function ensureDirectoryExists(dirPath: string): Promise<void> {\n  await mkdir(dirPath, { recursive: true });\n}\n","import { existsSync } from \"node:fs\";\nimport { copyFile, readFile, readdir, stat, unlink } from \"node:fs/promises\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { ensureDirectoryExists } from \"./file\";\n\nexport interface BackupOptions {\n  maxGenerations?: number;\n  maxAgeMs?: number;\n}\n\nconst DEFAULT_MAX_GENERATIONS = 50;\nconst DEFAULT_MAX_AGE_MS = 365 * 24 * 60 * 60 * 1000; // 1 year\n\n/**\n * Get package name from package.json\n */\nasync function resolvePackageName(): Promise<string> {\n  try {\n    const currentFile = fileURLToPath(import.meta.url);\n    let currentDir = dirname(currentFile);\n\n    for (let i = 0; i < 10; i++) {\n      const packageJsonPath = join(currentDir, \"package.json\");\n      if (existsSync(packageJsonPath)) {\n        const content = await readFile(packageJsonPath, \"utf-8\");\n        const pkg = JSON.parse(content);\n        return pkg.name;\n      }\n      currentDir = dirname(currentDir);\n    }\n  } catch {\n    // Fall back to hardcoded name if package.json is not found\n  }\n\n  return \"reference-manager\";\n}\n\nconst packageName = await resolvePackageName();\n\n/**\n * Get backup directory path for a library\n */\nexport function getBackupDirectory(libraryName: string): string {\n  const pkgName = packageName ?? \"reference-manager\";\n  return join(tmpdir(), pkgName, \"backups\", libraryName);\n}\n\n/**\n * Create a backup of the given file\n */\nexport async function createBackup(sourceFile: string, libraryName: string): Promise<string> {\n  const backupDir = getBackupDirectory(libraryName);\n  await ensureDirectoryExists(backupDir);\n\n  const timestamp = Date.now();\n  const backupFileName = `${timestamp}.backup`;\n  const backupPath = join(backupDir, backupFileName);\n\n  await copyFile(sourceFile, backupPath);\n\n  return backupPath;\n}\n\n/**\n * List all backups for a library (sorted by modification time, newest first)\n */\nexport async function listBackups(libraryName: string): Promise<string[]> {\n  const backupDir = getBackupDirectory(libraryName);\n\n  if (!existsSync(backupDir)) {\n    return [];\n  }\n\n  const files = await readdir(backupDir);\n  const backupFiles = files.filter((f) => f.endsWith(\".backup\")).map((f) => join(backupDir, f));\n\n  const filesWithStats = await Promise.all(\n    backupFiles.map(async (file) => {\n      const stats = await stat(file);\n      return { file, mtime: stats.mtimeMs };\n    })\n  );\n\n  filesWithStats.sort((a, b) => b.mtime - a.mtime);\n\n  return filesWithStats.map((f) => f.file);\n}\n\n/**\n * Clean up old backups based on generation count and age\n */\nexport async function cleanupOldBackups(\n  libraryName: string,\n  options?: BackupOptions\n): Promise<void> {\n  const maxGenerations = options?.maxGenerations ?? DEFAULT_MAX_GENERATIONS;\n  const maxAgeMs = options?.maxAgeMs ?? DEFAULT_MAX_AGE_MS;\n\n  const backups = await listBackups(libraryName);\n  const now = Date.now();\n\n  const backupsToDelete: string[] = [];\n\n  for (let i = 0; i < backups.length; i++) {\n    const backupPath = backups[i];\n    if (!backupPath) continue;\n\n    const stats = await stat(backupPath);\n    const age = now - stats.mtimeMs;\n\n    if (i >= maxGenerations || age > maxAgeMs) {\n      backupsToDelete.push(backupPath);\n    }\n  }\n\n  await Promise.all(backupsToDelete.map((backup) => unlink(backup)));\n}\n","/**\n * 3-way merge implementation with Last-Write-Wins (LWW) strategy\n */\n\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport type {\n  FieldConflict,\n  ItemConflict,\n  MergeOptions,\n  MergeResult,\n  MergeStatus,\n} from \"./types.js\";\n\n/**\n * Get UUID from item, with fallback to id if uuid is missing\n */\nfunction getItemUuid(item: CslItem): string {\n  return item.custom?.uuid || item.id || \"unknown\";\n}\n\n/**\n * Get timestamp from item, with fallback to created_at\n */\nfunction getTimestamp(item: CslItem): string {\n  return item.custom?.timestamp || item.custom?.created_at || \"1970-01-01T00:00:00.000Z\";\n}\n\n/**\n * Deep equality check for field values\n */\nfunction deepEqual(a: unknown, b: unknown): boolean {\n  return JSON.stringify(a) === JSON.stringify(b);\n}\n\n/**\n * Resolve a field conflict using LWW or prefer option\n */\nfunction resolveFieldConflict(\n  localValue: unknown,\n  remoteValue: unknown,\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): unknown {\n  if (localTimestamp > remoteTimestamp) {\n    return localValue;\n  }\n  if (remoteTimestamp > localTimestamp) {\n    return remoteValue;\n  }\n  // Timestamps equal: use prefer option or default to local\n  if (options?.prefer === \"remote\") {\n    return remoteValue;\n  }\n  return localValue;\n}\n\n/**\n * Determine conflict resolution type\n */\nfunction determineResolution(\n  fieldConflicts: FieldConflict[],\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): ItemConflict[\"resolution\"] {\n  const hasRealConflicts = fieldConflicts.every((fc) => fc.resolved !== undefined);\n  const localIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && localTimestamp > remoteTimestamp\n  );\n  const remoteIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && remoteTimestamp > localTimestamp\n  );\n\n  if (hasRealConflicts && localIsNewer) return \"auto-lww\";\n  if (hasRealConflicts && remoteIsNewer) return \"auto-lww\";\n  if (options?.prefer === \"local\") return \"prefer-local\";\n  if (options?.prefer === \"remote\") return \"prefer-remote\";\n  return \"unresolved\";\n}\n\n/**\n * Merge a single field from base, local, and remote versions\n */\nfunction mergeField(\n  key: string,\n  baseValue: unknown,\n  localValue: unknown,\n  remoteValue: unknown,\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): { value: unknown; conflict: FieldConflict | null } {\n  const localChanged = !deepEqual(baseValue, localValue);\n  const remoteChanged = !deepEqual(baseValue, remoteValue);\n\n  if (!localChanged && !remoteChanged) {\n    return { value: baseValue, conflict: null };\n  }\n\n  if (localChanged && !remoteChanged) {\n    return { value: localValue, conflict: null };\n  }\n\n  if (!localChanged && remoteChanged) {\n    return { value: remoteValue, conflict: null };\n  }\n\n  // Both changed\n  if (deepEqual(localValue, remoteValue)) {\n    return { value: localValue, conflict: null };\n  }\n\n  // Both changed to different values\n  const resolved = resolveFieldConflict(\n    localValue,\n    remoteValue,\n    localTimestamp,\n    remoteTimestamp,\n    options\n  );\n\n  // Don't record conflicts for 'custom' metadata field\n  if (key === \"custom\") {\n    return { value: resolved, conflict: null };\n  }\n\n  return {\n    value: resolved,\n    conflict: {\n      field: key,\n      base: baseValue,\n      local: localValue,\n      remote: remoteValue,\n      resolved,\n    },\n  };\n}\n\n/**\n * Merge a single item from base, local, and remote versions\n */\nfunction mergeItem(\n  base: CslItem,\n  local: CslItem,\n  remote: CslItem,\n  options?: MergeOptions\n): { merged: CslItem; conflict: ItemConflict | null } {\n  const uuid = getItemUuid(base);\n  const localTimestamp = getTimestamp(local);\n  const remoteTimestamp = getTimestamp(remote);\n\n  const merged: CslItem = { ...base };\n  const fieldConflicts: FieldConflict[] = [];\n\n  // Get all unique keys from all three versions\n  const allKeys = new Set<string>([\n    ...Object.keys(base),\n    ...Object.keys(local),\n    ...Object.keys(remote),\n  ]);\n\n  for (const key of allKeys) {\n    const baseValue = (base as Record<string, unknown>)[key];\n    const localValue = (local as Record<string, unknown>)[key];\n    const remoteValue = (remote as Record<string, unknown>)[key];\n\n    const { value, conflict } = mergeField(\n      key,\n      baseValue,\n      localValue,\n      remoteValue,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    (merged as Record<string, unknown>)[key] = value;\n\n    if (conflict) {\n      fieldConflicts.push(conflict);\n    }\n  }\n\n  // If there are field conflicts, create ItemConflict\n  if (fieldConflicts.length > 0) {\n    const resolution = determineResolution(\n      fieldConflicts,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    return {\n      merged,\n      conflict: {\n        uuid,\n        id: base.id || \"unknown\",\n        fields: fieldConflicts,\n        localTimestamp,\n        remoteTimestamp,\n        resolution,\n      },\n    };\n  }\n\n  return { merged, conflict: null };\n}\n\n/**\n * Build UUID-indexed maps from item arrays\n */\nfunction buildItemMaps(base: CslItem[], local: CslItem[], remote: CslItem[]) {\n  const baseMap = new Map<string, CslItem>();\n  const localMap = new Map<string, CslItem>();\n  const remoteMap = new Map<string, CslItem>();\n\n  for (const item of base) {\n    baseMap.set(getItemUuid(item), item);\n  }\n  for (const item of local) {\n    localMap.set(getItemUuid(item), item);\n  }\n  for (const item of remote) {\n    remoteMap.set(getItemUuid(item), item);\n  }\n\n  return { baseMap, localMap, remoteMap };\n}\n\n/**\n * Handle items that exist in all three versions\n */\nfunction mergeExistingItem(\n  baseItem: CslItem,\n  localItem: CslItem,\n  remoteItem: CslItem,\n  options: MergeOptions | undefined,\n  merged: CslItem[],\n  conflicts: ItemConflict[]\n): void {\n  const { merged: mergedItem, conflict } = mergeItem(baseItem, localItem, remoteItem, options);\n  merged.push(mergedItem);\n  if (conflict) {\n    conflicts.push(conflict);\n  }\n}\n\n/**\n * Handle items added in both local and remote\n */\nfunction handleDualAddition(\n  uuid: string,\n  localItem: CslItem,\n  remoteItem: CslItem,\n  options: MergeOptions | undefined,\n  merged: CslItem[],\n  conflicts: ItemConflict[]\n): void {\n  if (deepEqual(localItem, remoteItem)) {\n    merged.push(localItem);\n  } else {\n    const syntheticBase: CslItem = {\n      id: uuid,\n      type: \"article\",\n      custom: {\n        uuid,\n        created_at: \"1970-01-01T00:00:00.000Z\",\n        timestamp: \"1970-01-01T00:00:00.000Z\",\n      },\n    };\n    const { merged: mergedItem, conflict } = mergeItem(\n      syntheticBase,\n      localItem,\n      remoteItem,\n      options\n    );\n    merged.push(mergedItem);\n    if (conflict) {\n      conflicts.push(conflict);\n    }\n  }\n}\n\n/**\n * Process a single UUID across all three versions\n */\nfunction processItem(\n  uuid: string,\n  baseMap: Map<string, CslItem>,\n  localMap: Map<string, CslItem>,\n  remoteMap: Map<string, CslItem>,\n  options: MergeOptions | undefined,\n  result: {\n    merged: CslItem[];\n    conflicts: ItemConflict[];\n    localOnly: CslItem[];\n    remoteOnly: CslItem[];\n    deletedInLocal: CslItem[];\n    deletedInRemote: CslItem[];\n  }\n): void {\n  const baseItem = baseMap.get(uuid);\n  const localItem = localMap.get(uuid);\n  const remoteItem = remoteMap.get(uuid);\n\n  if (baseItem && localItem && remoteItem) {\n    mergeExistingItem(baseItem, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && remoteItem) {\n    handleDualAddition(uuid, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && !remoteItem) {\n    result.merged.push(localItem);\n    result.localOnly.push(localItem);\n  } else if (!baseItem && !localItem && remoteItem) {\n    result.merged.push(remoteItem);\n    result.remoteOnly.push(remoteItem);\n  } else if (baseItem && !localItem && remoteItem) {\n    result.deletedInLocal.push(baseItem);\n  } else if (baseItem && localItem && !remoteItem) {\n    result.deletedInRemote.push(baseItem);\n  } else if 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Set<string>([...baseMap.keys(), ...localMap.keys(), ...remoteMap.keys()]);\n\n  for (const uuid of allUuids) {\n    processItem(uuid, baseMap, localMap, remoteMap, options, result);\n  }\n\n  // Determine overall status\n  let status: MergeStatus = \"success\";\n  if (result.conflicts.length > 0) {\n    const hasUnresolved = result.conflicts.some((c) => c.resolution === \"unresolved\");\n    status = hasUnresolved ? \"conflict\" : \"auto-resolved\";\n  }\n\n  return {\n    status,\n    ...result,\n  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FieldConflict[],\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): ItemConflict[\"resolution\"] {\n  const hasRealConflicts = fieldConflicts.every((fc) => fc.resolved !== undefined);\n  const localIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && localTimestamp > remoteTimestamp\n  );\n  const remoteIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && remoteTimestamp > localTimestamp\n  );\n\n  if (hasRealConflicts && localIsNewer) return \"auto-lww\";\n  if (hasRealConflicts && remoteIsNewer) return \"auto-lww\";\n  if (options?.prefer === \"local\") return \"prefer-local\";\n  if (options?.prefer === \"remote\") return \"prefer-remote\";\n  return \"unresolved\";\n}\n\n/**\n * Merge a single field from base, local, and remote versions\n */\nfunction mergeField(\n  key: string,\n  baseValue: unknown,\n  localValue: unknown,\n  remoteValue: unknown,\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): { value: unknown; conflict: FieldConflict | null } {\n  const localChanged = !deepEqual(baseValue, localValue);\n  const remoteChanged = !deepEqual(baseValue, remoteValue);\n\n  if (!localChanged && !remoteChanged) {\n    return { value: baseValue, conflict: null };\n  }\n\n  if (localChanged && !remoteChanged) {\n    return { value: localValue, conflict: null };\n  }\n\n  if (!localChanged && remoteChanged) {\n    return { value: remoteValue, conflict: null };\n  }\n\n  // Both changed\n  if (deepEqual(localValue, remoteValue)) {\n    return { value: localValue, conflict: null };\n  }\n\n  // Both changed to different values\n  const resolved = resolveFieldConflict(\n    localValue,\n    remoteValue,\n    localTimestamp,\n    remoteTimestamp,\n    options\n  );\n\n  // Don't record conflicts for 'custom' metadata field\n  if (key === \"custom\") {\n    return { value: resolved, conflict: null };\n  }\n\n  return {\n    value: resolved,\n    conflict: {\n     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const { value, conflict } = mergeField(\n      key,\n      baseValue,\n      localValue,\n      remoteValue,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    (merged as Record<string, unknown>)[key] = value;\n\n    if (conflict) {\n      fieldConflicts.push(conflict);\n    }\n  }\n\n  // If there are field conflicts, create ItemConflict\n  if (fieldConflicts.length > 0) {\n    const resolution = determineResolution(\n      fieldConflicts,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    return {\n      merged,\n      conflict: {\n        uuid,\n        id: base.id || \"unknown\",\n        fields: fieldConflicts,\n        localTimestamp,\n        remoteTimestamp,\n        resolution,\n      },\n    };\n  }\n\n  return { merged, conflict: null };\n}\n\n/**\n * Build UUID-indexed maps from item arrays\n */\nfunction buildItemMaps(base: CslItem[], local: CslItem[], remote: CslItem[]) {\n  const baseMap = new Map<string, CslItem>();\n  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MergeOptions | undefined,\n  merged: CslItem[],\n  conflicts: ItemConflict[]\n): void {\n  if (deepEqual(localItem, remoteItem)) {\n    merged.push(localItem);\n  } else {\n    const syntheticBase: CslItem = {\n      id: uuid,\n      type: \"article\",\n      custom: {\n        uuid,\n        created_at: \"1970-01-01T00:00:00.000Z\",\n        timestamp: \"1970-01-01T00:00:00.000Z\",\n      },\n    };\n    const { merged: mergedItem, conflict } = mergeItem(\n      syntheticBase,\n      localItem,\n      remoteItem,\n      options\n    );\n    merged.push(mergedItem);\n    if (conflict) {\n      conflicts.push(conflict);\n    }\n  }\n}\n\n/**\n * Process a single UUID across all three versions\n */\nfunction processItem(\n  uuid: string,\n  baseMap: Map<string, CslItem>,\n  localMap: Map<string, CslItem>,\n  remoteMap: Map<string, CslItem>,\n  options: MergeOptions | undefined,\n  result: {\n    merged: CslItem[];\n    conflicts: ItemConflict[];\n    localOnly: CslItem[];\n    remoteOnly: CslItem[];\n    deletedInLocal: CslItem[];\n    deletedInRemote: CslItem[];\n  }\n): void {\n  const baseItem = baseMap.get(uuid);\n  const localItem = localMap.get(uuid);\n  const remoteItem = remoteMap.get(uuid);\n\n  if (baseItem && localItem && remoteItem) {\n    mergeExistingItem(baseItem, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && remoteItem) {\n    handleDualAddition(uuid, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && !remoteItem) {\n    result.merged.push(localItem);\n    result.localOnly.push(localItem);\n  } else if (!baseItem && !localItem && remoteItem) {\n    result.merged.push(remoteItem);\n    result.remoteOnly.push(remoteItem);\n  } else if (baseItem && !localItem && remoteItem) {\n    result.deletedInLocal.push(baseItem);\n  } else if (baseItem && localItem && !remoteItem) {\n    result.deletedInRemote.push(baseItem);\n  } else if (baseItem && !localItem && !remoteItem) {\n    result.deletedInLocal.push(baseItem);\n    result.deletedInRemote.push(baseItem);\n  }\n}\n\n/**\n * Performs a 3-way merge of CSL-JSON items\n *\n * @param base - Base version (common ancestor)\n * @param local - Local version (current working copy)\n * @param remote - Remote version (incoming changes)\n * @param options - Merge options (e.g., prefer local/remote for tie-breaking)\n * @returns Merge result with merged items and conflict information\n */\nexport function threeWayMerge(\n  base: CslItem[],\n  local: CslItem[],\n  remote: CslItem[],\n  options?: MergeOptions\n): MergeResult {\n  const { baseMap, localMap, remoteMap } = buildItemMaps(base, local, remote);\n\n  const result = {\n    merged: [] as CslItem[],\n    conflicts: [] as ItemConflict[],\n    localOnly: [] as CslItem[],\n    remoteOnly: [] as CslItem[],\n    deletedInLocal: [] as CslItem[],\n    deletedInRemote: [] as CslItem[],\n  };\n\n  const allUuids = new 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package/dist/server.js

@@ -1,6 +1,6 @@
 import "hono";
-import "./chunks/file-watcher-D7oyc-9z.js";
-import { c, s } from "./chunks/index-_7NEUoS7.js";
+import "./chunks/file-watcher-DdhXSm1l.js";
+import { c, s } from "./chunks/index-DmMZCOno.js";
 export {
   c as createServer,
   s as startServerWithFileWatcher

package/dist/utils/index.d.ts

@@ -3,4 +3,5 @@ export { computeHash, computeFileHash } from "./hash";
 export { writeFileAtomic, ensureDirectoryExists } from "./file";
 export { createBackup, cleanupOldBackups, getBackupDirectory, listBackups, type BackupOptions, } from "./backup";
 export { pickDefined } from "./object";
+export { getOpenerCommand, openWithSystemApp } from "./opener";
 //# sourceMappingURL=index.d.ts.map

package/dist/utils/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/utils/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,KAAK,MAAM,EAAE,KAAK,QAAQ,EAAE,MAAM,UAAU,CAAC;AACpE,OAAO,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,QAAQ,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,qBAAqB,EAAE,MAAM,QAAQ,CAAC;AAChE,OAAO,EACL,YAAY,EACZ,iBAAiB,EACjB,kBAAkB,EAClB,WAAW,EACX,KAAK,aAAa,GACnB,MAAM,UAAU,CAAC;AAClB,OAAO,EAAE,WAAW,EAAE,MAAM,UAAU,CAAC;AACvC,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAC"}

package/dist/utils/opener.d.ts

@@ -0,0 +1,13 @@
+/**
+ * Get the system opener command for the specified platform.
+ * @param platform - The platform (darwin, linux, win32)
+ * @returns The command array to execute
+ */
+export declare function getOpenerCommand(platform: string): string[];
+/**
+ * Open a file with the system's default application.
+ * @param filePath - The path to the file to open
+ * @param platform - The platform (defaults to process.platform)
+ */
+export declare function openWithSystemApp(filePath: string, platform?: string): Promise<void>;
+//# sourceMappingURL=opener.d.ts.map

package/dist/utils/opener.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"opener.d.ts","sourceRoot":"","sources":["../../src/utils/opener.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,CAW3D;AAED;;;;GAIG;AACH,wBAAsB,iBAAiB,CACrC,QAAQ,EAAE,MAAM,EAChB,QAAQ,GAAE,MAAyB,GAClC,OAAO,CAAC,IAAI,CAAC,CAyBf"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ncukondo/reference-manager",
-  "version": "0.7.1",
+  "version": "0.9.0",
   "description": "A local reference management tool using CSL-JSON as the single source of truth",
   "publishConfig": {
     "access": "public"