@ncukondo/reference-manager 0.7.1 → 0.8.0

package/README.md

@@ -442,7 +442,7 @@ reference-manager extends CSL-JSON with a `custom` object for additional metadat
 
 **Alpha** — This project is under active development. APIs and commands may change between versions.
 
-See [ROADMAP.md](./ROADMAP.md) for development progress and planned features.
+See [spec/tasks/ROADMAP.md](./spec/tasks/ROADMAP.md) for development progress and planned features.
 
 ## Development
 

package/dist/chunks/{loader-BItrdVWG.js → loader-CLCZRS4m.js}

@@ -1,9 +1,44 @@
+import { spawn } from "node:child_process";
 import { existsSync, readFileSync } from "node:fs";
 import { homedir, tmpdir } from "node:os";
 import { join } from "node:path";
 import { parse } from "@iarna/toml";
 import { z } from "zod";
 import { q as sortOrderSchema, u as sortFieldSchema } from "./file-watcher-D7oyc-9z.js";
+function getOpenerCommand(platform) {
+  switch (platform) {
+    case "darwin":
+      return ["open"];
+    case "linux":
+      return ["xdg-open"];
+    case "win32":
+      return ["cmd", "/c", "start", ""];
+    default:
+      throw new Error(`Unsupported platform: ${platform}`);
+  }
+}
+async function openWithSystemApp(filePath, platform = process.platform) {
+  const commandParts = getOpenerCommand(platform);
+  const [command, ...baseArgs] = commandParts;
+  const args = [...baseArgs, filePath];
+  return new Promise((resolve, reject) => {
+    const proc = spawn(command, args, {
+      detached: true,
+      stdio: "ignore"
+    });
+    proc.on("error", () => {
+      reject(new Error(`Failed to open file: ${filePath}`));
+    });
+    proc.on("close", (code) => {
+      if (code === 0) {
+        resolve();
+      } else {
+        reject(new Error(`Failed to open file: ${filePath}`));
+      }
+    });
+    proc.unref();
+  });
+}
 const logLevelSchema = z.enum(["silent", "info", "debug"]);
 const interactiveConfigSchema = z.object({
   limit: z.number().int().nonnegative(),
@@ -501,17 +536,19 @@ function loadConfig(options = {}) {
   }
 }
 export {
-  getDefaultCurrentDirConfigFilename as a,
+  getDefaultBackupDirectory as a,
   backupConfigSchema as b,
   configSchema as c,
   defaultConfig as d,
-  getDefaultLibraryPath as e,
-  getDefaultUserConfigPath as f,
-  getDefaultBackupDirectory as g,
-  logLevelSchema as h,
+  getDefaultCurrentDirConfigFilename as e,
+  getDefaultLibraryPath as f,
+  getOpenerCommand as g,
+  getDefaultUserConfigPath as h,
+  logLevelSchema as i,
   loadConfig as l,
   normalizePartialConfig as n,
+  openWithSystemApp as o,
   partialConfigSchema as p,
   watchConfigSchema as w
 };
-//# sourceMappingURL=loader-BItrdVWG.js.map
+//# sourceMappingURL=loader-CLCZRS4m.js.map

package/dist/chunks/loader-CLCZRS4m.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"loader-CLCZRS4m.js","sources":["../../src/utils/opener.ts","../../src/config/schema.ts","../../src/config/defaults.ts","../../src/config/loader.ts"],"sourcesContent":["import { type ChildProcess, spawn } from \"node:child_process\";\n\n/**\n * Get the system opener command for the specified platform.\n * @param platform - The platform (darwin, linux, win32)\n * @returns The command array to execute\n */\nexport function getOpenerCommand(platform: string): string[] {\n  switch (platform) {\n    case \"darwin\":\n      return [\"open\"];\n    case \"linux\":\n      return [\"xdg-open\"];\n    case \"win32\":\n      return [\"cmd\", \"/c\", \"start\", \"\"];\n    default:\n      throw new Error(`Unsupported platform: ${platform}`);\n  }\n}\n\n/**\n * Open a file with the system's default application.\n * @param filePath - The path to the file to open\n * @param platform - The platform (defaults to process.platform)\n */\nexport async function openWithSystemApp(\n  filePath: string,\n  platform: string = process.platform\n): Promise<void> {\n  const commandParts = getOpenerCommand(platform);\n  const [command, ...baseArgs] = commandParts;\n  const args = [...baseArgs, filePath];\n\n  return new Promise((resolve, reject) => {\n    const proc: ChildProcess = spawn(command as string, args, {\n      detached: true,\n      stdio: \"ignore\",\n    });\n\n    proc.on(\"error\", () => {\n      reject(new Error(`Failed to open file: ${filePath}`));\n    });\n\n    proc.on(\"close\", (code: number | null) => {\n      if (code === 0) {\n        resolve();\n      } else {\n        reject(new Error(`Failed to open file: ${filePath}`));\n      }\n    });\n\n    proc.unref();\n  });\n}\n","/**\n * Configuration schema using Zod\n */\n\nimport { z } from \"zod\";\nimport { sortFieldSchema, sortOrderSchema } from \"../features/pagination/types.js\";\n\n/**\n * Log level schema\n */\nexport const logLevelSchema = z.enum([\"silent\", \"info\", \"debug\"]);\n\n/**\n * Interactive search configuration schema\n */\nexport const interactiveConfigSchema = z.object({\n  limit: z.number().int().nonnegative(),\n  debounceMs: z.number().int().nonnegative(),\n});\n\n/**\n * CLI configuration schema\n */\nexport const cliConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n  defaultSort: sortFieldSchema,\n  defaultOrder: sortOrderSchema,\n  interactive: interactiveConfigSchema,\n});\n\n/**\n * MCP configuration schema\n */\nexport const mcpConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n});\n\n/**\n * Backup configuration schema\n */\nexport const backupConfigSchema = z.object({\n  maxGenerations: z.number().int().positive(),\n  maxAgeDays: z.number().int().positive(),\n  directory: z.string().min(1),\n});\n\n/**\n * File watching configuration schema\n * Note: File watching is always enabled in server mode (HTTP/MCP).\n * CLI mode does not use file watching.\n */\nexport const watchConfigSchema = z.object({\n  debounceMs: z.number().int().nonnegative(),\n  pollIntervalMs: z.number().int().positive(),\n  retryIntervalMs: z.number().int().positive(),\n  maxRetries: z.number().int().nonnegative(),\n});\n\n/**\n * Server configuration schema\n */\nexport const serverConfigSchema = z.object({\n  autoStart: z.boolean(),\n  autoStopMinutes: z.number().int().nonnegative(),\n});\n\n/**\n * Citation format schema\n */\nexport const citationFormatSchema = z.enum([\"text\", \"html\", \"rtf\"]);\n\n/**\n * Citation configuration schema\n */\nexport const citationConfigSchema = z.object({\n  defaultStyle: z.string(),\n  cslDirectory: z.array(z.string()),\n  defaultLocale: z.string(),\n  defaultFormat: citationFormatSchema,\n});\n\n/**\n * PubMed API configuration schema\n */\nexport const pubmedConfigSchema = z.object({\n  email: z.string().optional(),\n  apiKey: z.string().optional(),\n});\n\n/**\n * Fulltext storage configuration schema\n */\nexport const fulltextConfigSchema = z.object({\n  directory: z.string().min(1),\n});\n\n/**\n * Complete configuration schema\n */\nexport const configSchema = z.object({\n  library: z.string().min(1),\n  logLevel: logLevelSchema,\n  backup: backupConfigSchema,\n  watch: watchConfigSchema,\n  server: serverConfigSchema,\n  citation: citationConfigSchema,\n  pubmed: pubmedConfigSchema,\n  fulltext: fulltextConfigSchema,\n  cli: cliConfigSchema,\n  mcp: mcpConfigSchema,\n});\n\n/**\n * Partial configuration schema (for TOML files)\n * Supports both camelCase and snake_case field names\n */\nexport const partialConfigSchema = z\n  .object({\n    library: z.string().min(1).optional(),\n    logLevel: logLevelSchema.optional(),\n    log_level: logLevelSchema.optional(), // snake_case support\n    backup: z\n      .object({\n        maxGenerations: z.number().int().positive().optional(),\n        max_generations: z.number().int().positive().optional(),\n        maxAgeDays: z.number().int().positive().optional(),\n        max_age_days: z.number().int().positive().optional(),\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    watch: z\n      .object({\n        debounceMs: z.number().int().nonnegative().optional(),\n        debounce_ms: z.number().int().nonnegative().optional(),\n        pollIntervalMs: z.number().int().positive().optional(),\n        poll_interval_ms: z.number().int().positive().optional(),\n        retryIntervalMs: z.number().int().positive().optional(),\n        retry_interval_ms: z.number().int().positive().optional(),\n        maxRetries: z.number().int().nonnegative().optional(),\n        max_retries: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    server: z\n      .object({\n        autoStart: z.boolean().optional(),\n        auto_start: z.boolean().optional(),\n        autoStopMinutes: z.number().int().nonnegative().optional(),\n        auto_stop_minutes: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    citation: z\n      .object({\n        defaultStyle: z.string().optional(),\n        default_style: z.string().optional(),\n        cslDirectory: z.union([z.string(), z.array(z.string())]).optional(),\n        csl_directory: z.union([z.string(), z.array(z.string())]).optional(),\n        defaultLocale: z.string().optional(),\n        default_locale: z.string().optional(),\n        defaultFormat: citationFormatSchema.optional(),\n        default_format: citationFormatSchema.optional(),\n      })\n      .optional(),\n    pubmed: z\n      .object({\n        email: z.string().optional(),\n        apiKey: z.string().optional(),\n        api_key: z.string().optional(),\n      })\n      .optional(),\n    fulltext: z\n      .object({\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    cli: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n        defaultSort: sortFieldSchema.optional(),\n        default_sort: sortFieldSchema.optional(),\n        defaultOrder: sortOrderSchema.optional(),\n        default_order: sortOrderSchema.optional(),\n        interactive: z\n          .object({\n            limit: z.number().int().nonnegative().optional(),\n            debounceMs: z.number().int().nonnegative().optional(),\n            debounce_ms: z.number().int().nonnegative().optional(),\n          })\n          .optional(),\n      })\n      .optional(),\n    mcp: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n  })\n  .passthrough(); // Allow unknown fields in TOML files\n\n/**\n * Inferred types from schemas\n */\nexport type LogLevel = z.infer<typeof logLevelSchema>;\nexport type BackupConfig = z.infer<typeof backupConfigSchema>;\nexport type WatchConfig = z.infer<typeof watchConfigSchema>;\nexport type ServerConfig = z.infer<typeof serverConfigSchema>;\nexport type CitationFormat = z.infer<typeof citationFormatSchema>;\nexport type CitationConfig = z.infer<typeof citationConfigSchema>;\nexport type PubmedConfig = z.infer<typeof pubmedConfigSchema>;\nexport type FulltextConfig = z.infer<typeof fulltextConfigSchema>;\nexport type InteractiveConfig = z.infer<typeof interactiveConfigSchema>;\nexport type CliConfig = z.infer<typeof cliConfigSchema>;\nexport type McpConfig = z.infer<typeof mcpConfigSchema>;\nexport type Config = z.infer<typeof configSchema>;\nexport type PartialConfig = z.infer<typeof partialConfigSchema>;\n\n/**\n * Deep partial type for Config\n */\nexport type DeepPartialConfig = {\n  library?: string;\n  logLevel?: LogLevel;\n  backup?: Partial<BackupConfig>;\n  watch?: Partial<WatchConfig>;\n  server?: Partial<ServerConfig>;\n  citation?: Partial<CitationConfig>;\n  pubmed?: Partial<PubmedConfig>;\n  fulltext?: Partial<FulltextConfig>;\n  cli?: Partial<Omit<CliConfig, \"interactive\">> & {\n    interactive?: Partial<InteractiveConfig>;\n  };\n  mcp?: Partial<McpConfig>;\n};\n\n/**\n * Normalize backup configuration from snake_case to camelCase\n */\nfunction normalizeBackupConfig(\n  backup: Partial<{\n    maxGenerations?: number;\n    max_generations?: number;\n    maxAgeDays?: number;\n    max_age_days?: number;\n    directory?: string;\n  }>\n): Partial<BackupConfig> | undefined {\n  const normalized: Partial<BackupConfig> = {};\n\n  const maxGenerations = backup.maxGenerations ?? backup.max_generations;\n  if (maxGenerations !== undefined) {\n    normalized.maxGenerations = maxGenerations;\n  }\n\n  const maxAgeDays = backup.maxAgeDays ?? backup.max_age_days;\n  if (maxAgeDays !== undefined) {\n    normalized.maxAgeDays = maxAgeDays;\n  }\n\n  if (backup.directory !== undefined) {\n    normalized.directory = backup.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize watch configuration from snake_case to camelCase\n */\nfunction normalizeWatchConfig(\n  watch: Partial<{\n    debounceMs?: number;\n    debounce_ms?: number;\n    pollIntervalMs?: number;\n    poll_interval_ms?: number;\n    retryIntervalMs?: number;\n    retry_interval_ms?: number;\n    maxRetries?: number;\n    max_retries?: number;\n  }>\n): Partial<WatchConfig> | undefined {\n  const normalized: Partial<WatchConfig> = {};\n\n  const debounceMs = watch.debounceMs ?? watch.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n\n  const pollIntervalMs = watch.pollIntervalMs ?? watch.poll_interval_ms;\n  if (pollIntervalMs !== undefined) {\n    normalized.pollIntervalMs = pollIntervalMs;\n  }\n\n  const retryIntervalMs = watch.retryIntervalMs ?? watch.retry_interval_ms;\n  if (retryIntervalMs !== undefined) {\n    normalized.retryIntervalMs = retryIntervalMs;\n  }\n\n  const maxRetries = watch.maxRetries ?? watch.max_retries;\n  if (maxRetries !== undefined) {\n    normalized.maxRetries = maxRetries;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize server configuration from snake_case to camelCase\n */\nfunction normalizeServerConfig(\n  server: Partial<{\n    autoStart?: boolean;\n    auto_start?: boolean;\n    autoStopMinutes?: number;\n    auto_stop_minutes?: number;\n  }>\n): Partial<ServerConfig> | undefined {\n  const normalized: Partial<ServerConfig> = {};\n\n  const autoStart = server.autoStart ?? server.auto_start;\n  if (autoStart !== undefined) {\n    normalized.autoStart = autoStart;\n  }\n\n  const autoStopMinutes = server.autoStopMinutes ?? server.auto_stop_minutes;\n  if (autoStopMinutes !== undefined) {\n    normalized.autoStopMinutes = autoStopMinutes;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize citation configuration from snake_case to camelCase\n */\nfunction normalizeCitationConfig(\n  citation: Partial<{\n    defaultStyle?: string;\n    default_style?: string;\n    cslDirectory?: string | string[];\n    csl_directory?: string | string[];\n    defaultLocale?: string;\n    default_locale?: string;\n    defaultFormat?: CitationFormat;\n    default_format?: CitationFormat;\n  }>\n): Partial<CitationConfig> | undefined {\n  const normalized: Partial<CitationConfig> = {};\n\n  const defaultStyle = citation.defaultStyle ?? citation.default_style;\n  if (defaultStyle !== undefined) {\n    normalized.defaultStyle = defaultStyle;\n  }\n\n  const cslDirectory = citation.cslDirectory ?? citation.csl_directory;\n  if (cslDirectory !== undefined) {\n    // Normalize to array: string -> [string]\n    normalized.cslDirectory = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];\n  }\n\n  const defaultLocale = citation.defaultLocale ?? citation.default_locale;\n  if (defaultLocale !== undefined) {\n    normalized.defaultLocale = defaultLocale;\n  }\n\n  const defaultFormat = citation.defaultFormat ?? citation.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize pubmed configuration from snake_case to camelCase\n */\nfunction normalizePubmedConfig(\n  pubmed: Partial<{\n    email?: string;\n    apiKey?: string;\n    api_key?: string;\n  }>\n): Partial<PubmedConfig> | undefined {\n  const normalized: Partial<PubmedConfig> = {};\n\n  if (pubmed.email !== undefined) {\n    normalized.email = pubmed.email;\n  }\n\n  const apiKey = pubmed.apiKey ?? pubmed.api_key;\n  if (apiKey !== undefined) {\n    normalized.apiKey = apiKey;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Section normalizers mapping\n */\nconst sectionNormalizers = {\n  backup: normalizeBackupConfig,\n  watch: normalizeWatchConfig,\n  server: normalizeServerConfig,\n  citation: normalizeCitationConfig,\n  pubmed: normalizePubmedConfig,\n  fulltext: normalizeFulltextConfig,\n  cli: normalizeCliConfig,\n  mcp: normalizeMcpConfig,\n} as const;\n\ntype SectionKey = keyof typeof sectionNormalizers;\n\n/**\n * Helper to apply a normalizer function to a config section\n */\nfunction applyNormalizer<K extends SectionKey>(\n  normalized: DeepPartialConfig,\n  partial: PartialConfig,\n  key: K,\n  normalizer: (typeof sectionNormalizers)[K]\n): void {\n  const value = partial[key];\n  if (value !== undefined) {\n    const result = (normalizer as (input: unknown) => DeepPartialConfig[K] | undefined)(value);\n    if (result) {\n      normalized[key] = result;\n    }\n  }\n}\n\n/**\n * Normalize snake_case fields to camelCase\n */\nexport function normalizePartialConfig(partial: PartialConfig): DeepPartialConfig {\n  const normalized: DeepPartialConfig = {};\n\n  // Simple fields\n  if (partial.library !== undefined) {\n    normalized.library = partial.library;\n  }\n  const logLevel = partial.logLevel ?? partial.log_level;\n  if (logLevel !== undefined) {\n    normalized.logLevel = logLevel;\n  }\n\n  // Section fields\n  for (const key of Object.keys(sectionNormalizers) as SectionKey[]) {\n    applyNormalizer(normalized, partial, key, sectionNormalizers[key]);\n  }\n\n  return normalized;\n}\n\n/**\n * Normalize fulltext configuration\n */\nfunction normalizeFulltextConfig(fulltext: {\n  directory?: string | undefined;\n}): Partial<FulltextConfig> | undefined {\n  const normalized: Partial<FulltextConfig> = {};\n\n  if (fulltext.directory !== undefined) {\n    normalized.directory = fulltext.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize CLI configuration from snake_case to camelCase\n */\nfunction normalizeCliConfig(\n  cli: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n    defaultSort?: CliConfig[\"defaultSort\"];\n    default_sort?: CliConfig[\"defaultSort\"];\n    defaultOrder?: CliConfig[\"defaultOrder\"];\n    default_order?: CliConfig[\"defaultOrder\"];\n    interactive?: Partial<{\n      limit?: number;\n      debounceMs?: number;\n      debounce_ms?: number;\n    }>;\n  }>\n): Partial<CliConfig> | undefined {\n  const normalized: Partial<CliConfig> = {};\n\n  const defaultLimit = cli.defaultLimit ?? cli.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  const defaultSort = cli.defaultSort ?? cli.default_sort;\n  if (defaultSort !== undefined) {\n    normalized.defaultSort = defaultSort;\n  }\n\n  const defaultOrder = cli.defaultOrder ?? cli.default_order;\n  if (defaultOrder !== undefined) {\n    normalized.defaultOrder = defaultOrder;\n  }\n\n  if (cli.interactive !== undefined) {\n    const interactive: Partial<InteractiveConfig> = {};\n    if (cli.interactive.limit !== undefined) {\n      interactive.limit = cli.interactive.limit;\n    }\n    const debounceMs = cli.interactive.debounceMs ?? cli.interactive.debounce_ms;\n    if (debounceMs !== undefined) {\n      interactive.debounceMs = debounceMs;\n    }\n    if (Object.keys(interactive).length > 0) {\n      normalized.interactive = interactive as InteractiveConfig;\n    }\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize MCP configuration from snake_case to camelCase\n */\nfunction normalizeMcpConfig(\n  mcp: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n  }>\n): Partial<McpConfig> | undefined {\n  const normalized: Partial<McpConfig> = {};\n\n  const defaultLimit = mcp.defaultLimit ?? mcp.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n","/**\n * Default configuration values\n */\n\nimport { tmpdir } from \"node:os\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport type { Config } from \"./schema.js\";\n\n/**\n * Get the default backup directory\n * Uses $TMPDIR/reference-manager/backups/\n */\nexport function getDefaultBackupDirectory(): string {\n  return join(tmpdir(), \"reference-manager\", \"backups\");\n}\n\n/**\n * Get the default library path\n * Uses ~/.reference-manager/csl.library.json\n */\nexport function getDefaultLibraryPath(): string {\n  return join(homedir(), \".reference-manager\", \"csl.library.json\");\n}\n\n/**\n * Get the default user config path\n * Uses ~/.reference-manager/config.toml\n */\nexport function getDefaultUserConfigPath(): string {\n  return join(homedir(), \".reference-manager\", \"config.toml\");\n}\n\n/**\n * Get the default current directory config filename\n * Uses .reference-manager.config.toml\n */\nexport function getDefaultCurrentDirConfigFilename(): string {\n  return \".reference-manager.config.toml\";\n}\n\n/**\n * Get the default CSL directory\n * Uses ~/.reference-manager/csl/\n */\nexport function getDefaultCslDirectory(): string {\n  return join(homedir(), \".reference-manager\", \"csl\");\n}\n\n/**\n * Get the default fulltext directory\n * Uses ~/.reference-manager/fulltext/\n */\nexport function getDefaultFulltextDirectory(): string {\n  return join(homedir(), \".reference-manager\", \"fulltext\");\n}\n\n/**\n * Default configuration\n */\nexport const defaultConfig: Config = {\n  library: getDefaultLibraryPath(),\n  logLevel: \"info\",\n  backup: {\n    maxGenerations: 50,\n    maxAgeDays: 365,\n    directory: getDefaultBackupDirectory(),\n  },\n  watch: {\n    debounceMs: 500,\n    pollIntervalMs: 5000,\n    retryIntervalMs: 200,\n    maxRetries: 10,\n  },\n  server: {\n    autoStart: false,\n    autoStopMinutes: 0,\n  },\n  citation: {\n    defaultStyle: \"apa\",\n    cslDirectory: [getDefaultCslDirectory()],\n    defaultLocale: \"en-US\",\n    defaultFormat: \"text\",\n  },\n  pubmed: {\n    email: undefined,\n    apiKey: undefined,\n  },\n  fulltext: {\n    directory: getDefaultFulltextDirectory(),\n  },\n  cli: {\n    defaultLimit: 0,\n    defaultSort: \"updated\",\n    defaultOrder: \"desc\",\n    interactive: {\n      limit: 20,\n      debounceMs: 200,\n    },\n  },\n  mcp: {\n    defaultLimit: 20,\n  },\n};\n","/**\n * Configuration loader\n */\n\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { parse as parseTOML } from \"@iarna/toml\";\nimport {\n  defaultConfig,\n  getDefaultCurrentDirConfigFilename,\n  getDefaultUserConfigPath,\n} from \"./defaults.js\";\nimport {\n  type Config,\n  type DeepPartialConfig,\n  type PartialConfig,\n  configSchema,\n  normalizePartialConfig,\n  partialConfigSchema,\n} from \"./schema.js\";\n\n/**\n * Options for loading configuration\n */\nexport interface LoadConfigOptions {\n  /** Current working directory (default: process.cwd()) */\n  cwd?: string;\n  /** User config path (default: ~/.reference-manager/config.toml) */\n  userConfigPath?: string;\n  /** CLI argument overrides */\n  overrides?: Partial<Config>;\n}\n\n/**\n * Load and parse a TOML config file\n */\nfunction loadTOMLFile(path: string): PartialConfig | null {\n  if (!existsSync(path)) {\n    return null;\n  }\n\n  try {\n    const content = readFileSync(path, \"utf-8\");\n    const parsed = parseTOML(content);\n\n    // Validate with partial schema\n    const validated = partialConfigSchema.parse(parsed);\n    return validated;\n  } catch (error) {\n    throw new Error(\n      `Failed to load config from ${path}: ${error instanceof Error ? error.message : String(error)}`\n    );\n  }\n}\n\n/**\n * Merge CLI config with nested interactive section\n */\nfunction mergeCliConfig(\n  base: DeepPartialConfig[\"cli\"],\n  override: NonNullable<DeepPartialConfig[\"cli\"]>\n): NonNullable<DeepPartialConfig[\"cli\"]> {\n  const { interactive: overrideInteractive, ...overrideCliRest } = override;\n  const { interactive: baseInteractive, ...baseCliRest } = base ?? {};\n  const mergedInteractive =\n    overrideInteractive !== undefined\n      ? { ...baseInteractive, ...overrideInteractive }\n      : baseInteractive;\n  return {\n    ...baseCliRest,\n    ...overrideCliRest,\n    ...(mergedInteractive !== undefined ? { interactive: mergedInteractive } : {}),\n  };\n}\n\n/**\n * Merge partial configurations\n * Later configs override earlier ones\n */\nfunction mergeConfigs(\n  base: DeepPartialConfig,\n  ...overrides: (DeepPartialConfig | null | undefined)[]\n): DeepPartialConfig {\n  const result: DeepPartialConfig = { ...base };\n\n  const sectionKeys = [\n    \"backup\",\n    \"watch\",\n    \"server\",\n    \"citation\",\n    \"pubmed\",\n    \"fulltext\",\n    \"mcp\",\n  ] as const;\n\n  for (const override of overrides) {\n    if (!override) continue;\n\n    // Merge top-level primitive fields\n    if (override.library !== undefined) {\n      result.library = override.library;\n    }\n    if (override.logLevel !== undefined) {\n      result.logLevel = override.logLevel;\n    }\n\n    // Merge section configs\n    for (const key of sectionKeys) {\n      if (override[key] !== undefined) {\n        result[key] = {\n          ...result[key],\n          ...override[key],\n        };\n      }\n    }\n\n    // Merge cli config with nested interactive\n    if (override.cli !== undefined) {\n      result.cli = mergeCliConfig(result.cli, override.cli);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Fill missing fields with defaults\n */\nfunction fillDefaults(partial: DeepPartialConfig): Config {\n  return {\n    library: partial.library ?? defaultConfig.library,\n    logLevel: partial.logLevel ?? defaultConfig.logLevel,\n    backup: {\n      maxGenerations: partial.backup?.maxGenerations ?? defaultConfig.backup.maxGenerations,\n      maxAgeDays: partial.backup?.maxAgeDays ?? defaultConfig.backup.maxAgeDays,\n      directory: partial.backup?.directory 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join(homedir(), path.slice(2));\n  }\n  return path;\n}\n\n/**\n * Fill fulltext config with defaults\n *\n * Priority:\n * 1. 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package/dist/cli/commands/fulltext.d.ts

@@ -5,7 +5,7 @@
  */
 import type { IdentifierType } from "../../core/library-interface.js";
 import type { FulltextType } from "../../features/fulltext/index.js";
-import { type FulltextAttachResult, type FulltextDetachResult, type FulltextGetResult } from "../../features/operations/fulltext/index.js";
+import { type FulltextAttachResult, type FulltextDetachResult, type FulltextGetResult, type FulltextOpenResult } from "../../features/operations/fulltext/index.js";
 import type { ExecutionContext } from "../execution-context.js";
 /**
  * Options for fulltext attach command
@@ -41,7 +41,16 @@ export interface FulltextDetachOptions {
     idType?: IdentifierType;
     fulltextDirectory: string;
 }
-export type { FulltextAttachResult, FulltextGetResult, FulltextDetachResult };
+/**
+ * Options for fulltext open command
+ */
+export interface FulltextOpenOptions {
+    identifier: string;
+    type?: FulltextType;
+    idType?: IdentifierType;
+    fulltextDirectory: string;
+}
+export type { FulltextAttachResult, FulltextGetResult, FulltextDetachResult, FulltextOpenResult };
 /**
  * Execute fulltext attach command
  */
@@ -54,6 +63,10 @@ export declare function executeFulltextGet(options: FulltextGetOptions, context:
  * Execute fulltext detach command
  */
 export declare function executeFulltextDetach(options: FulltextDetachOptions, context: ExecutionContext): Promise<FulltextDetachResult>;
+/**
+ * Execute fulltext open command
+ */
+export declare function executeFulltextOpen(options: FulltextOpenOptions, context: ExecutionContext): Promise<FulltextOpenResult>;
 /**
  * Format fulltext attach output
  */
@@ -66,8 +79,12 @@ export declare function formatFulltextGetOutput(result: FulltextGetResult): stri
  * Format fulltext detach output
  */
 export declare function formatFulltextDetachOutput(result: FulltextDetachResult): string;
+/**
+ * Format fulltext open output
+ */
+export declare function formatFulltextOpenOutput(result: FulltextOpenResult): string;
 /**
  * Get exit code for fulltext command result
  */
-export declare function getFulltextExitCode(result: FulltextAttachResult | FulltextGetResult | FulltextDetachResult): number;
+export declare function getFulltextExitCode(result: FulltextAttachResult | FulltextGetResult | FulltextDetachResult | FulltextOpenResult): number;
 //# sourceMappingURL=fulltext.d.ts.map

package/dist/cli/commands/fulltext.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"fulltext.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/fulltext.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AACtE,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,kCAAkC,CAAC;AACrE,OAAO,EACL,KAAK,oBAAoB,EACzB,KAAK,oBAAoB,EACzB,KAAK,iBAAiB,EACtB,KAAK,kBAAkB,EASxB,MAAM,6CAA6C,CAAC;AACrD,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAEhE;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,IAAI,CAAC,EAAE,YAAY,CAAC;IACpB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,YAAY,CAAC;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,YAAY,CAAC;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,YAAY,CAAC;IACpB,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,iBAAiB,EAAE,MAAM,CAAC;CAC3B;AAGD,YAAY,EAAE,oBAAoB,EAAE,iBAAiB,EAAE,oBAAoB,EAAE,kBAAkB,EAAE,CAAC;AAElG;;GAEG;AACH,wBAAsB,qBAAqB,CACzC,OAAO,EAAE,qBAAqB,EAC9B,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,oBAAoB,CAAC,CAa/B;AAED;;GAEG;AACH,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,kBAAkB,EAC3B,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,iBAAiB,CAAC,CAU5B;AAED;;GAEG;AACH,wBAAsB,qBAAqB,CACzC,OAAO,EAAE,qBAAqB,EAC9B,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,oBAAoB,CAAC,CAU/B;AAED;;GAEG;AACH,wBAAsB,mBAAmB,CACvC,OAAO,EAAE,mBAAmB,EAC5B,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,kBAAkB,CAAC,CAS7B;AAMD;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,oBAAoB,GAAG,MAAM,CAiB/E;AAED;;GAEG;AACH,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,iBAAiB,GAAG,MAAM,CAkBzE;AAED;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,oBAAoB,GAAG,MAAM,CAe/E;AAED;;GAEG;AACH,wBAAgB,wBAAwB,CAAC,MAAM,EAAE,kBAAkB,GAAG,MAAM,CAM3E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,oBAAoB,GAAG,iBAAiB,GAAG,oBAAoB,GAAG,kBAAkB,GAC3F,MAAM,CAER"}

package/dist/cli/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cli/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA0DpC;;GAEG;AACH,wBAAgB,aAAa,IAAI,OAAO,CA+BvC;AAgyBD;;GAEG;AACH,wBAAsB,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBxD"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cli/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA6DpC;;GAEG;AACH,wBAAgB,aAAa,IAAI,OAAO,CA+BvC;AAm2BD;;GAEG;AACH,wBAAsB,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBxD"}

package/dist/cli.js

@@ -8,12 +8,12 @@ import * as path from "node:path";
 import { join, extname } from "node:path";
 import { mkdir, unlink, rename, copyFile, rm, readFile } from "node:fs/promises";
 import { u as updateReference, B as BUILTIN_STYLES, s as startServerWithFileWatcher } from "./chunks/index-_7NEUoS7.js";
+import { o as openWithSystemApp, l as loadConfig } from "./chunks/loader-CLCZRS4m.js";
 import process$1, { stdin, stdout } from "node:process";
-import { l as loadConfig } from "./chunks/loader-BItrdVWG.js";
 import { spawn } from "node:child_process";
 import { serve } from "@hono/node-server";
 const name = "@ncukondo/reference-manager";
-const version$1 = "0.7.1";
+const version$1 = "0.8.0";
 const description$1 = "A local reference management tool using CSL-JSON as the single source of truth";
 const packageJson = {
   name,
@@ -607,6 +607,54 @@ async function fulltextDetach(library, options) {
     return handleDetachError(error);
   }
 }
+function getFulltextPath(item, type2, fulltextDirectory) {
+  const fulltext = item.custom?.fulltext;
+  if (!fulltext) return void 0;
+  const filename = type2 === "pdf" ? fulltext.pdf : fulltext.markdown;
+  if (!filename) return void 0;
+  return join(fulltextDirectory, filename);
+}
+function determineTypeToOpen(item) {
+  const fulltext = item.custom?.fulltext;
+  if (!fulltext) return void 0;
+  if (fulltext.pdf) return "pdf";
+  if (fulltext.markdown) return "markdown";
+  return void 0;
+}
+async function fulltextOpen(library, options) {
+  const { identifier, type: type2, idType = "id", fulltextDirectory } = options;
+  const item = await library.find(identifier, { idType });
+  if (!item) {
+    return { success: false, error: `Reference not found: ${identifier}` };
+  }
+  const typeToOpen = type2 ?? determineTypeToOpen(item);
+  if (!typeToOpen) {
+    return { success: false, error: `No fulltext attached to reference: ${identifier}` };
+  }
+  const filePath = getFulltextPath(item, typeToOpen, fulltextDirectory);
+  if (!filePath) {
+    return { success: false, error: `No ${typeToOpen} attached to reference: ${identifier}` };
+  }
+  if (!existsSync(filePath)) {
+    return {
+      success: false,
+      error: `Fulltext file not found: ${filePath} (metadata exists but file is missing)`
+    };
+  }
+  try {
+    await openWithSystemApp(filePath);
+    return {
+      success: true,
+      openedType: typeToOpen,
+      openedPath: filePath
+    };
+  } catch (_error) {
+    return {
+      success: false,
+      error: `Failed to open file: ${filePath}`
+    };
+  }
+}
 async function executeFulltextAttach(options, context) {
   const operationOptions = {
     identifier: options.identifier,
@@ -640,6 +688,15 @@ async function executeFulltextDetach(options, context) {
   };
   return fulltextDetach(context.library, operationOptions);
 }
+async function executeFulltextOpen(options, context) {
+  const operationOptions = {
+    identifier: options.identifier,
+    type: options.type,
+    idType: options.idType,
+    fulltextDirectory: options.fulltextDirectory
+  };
+  return fulltextOpen(context.library, operationOptions);
+}
 function formatFulltextAttachOutput(result) {
   if (result.requiresConfirmation) {
     return `File already attached: ${result.existingFile}
@@ -686,6 +743,12 @@ function formatFulltextDetachOutput(result) {
   }
   return lines.join("\n");
 }
+function formatFulltextOpenOutput(result) {
+  if (!result.success) {
+    return `Error: ${result.error}`;
+  }
+  return `Opened ${result.openedType}: ${result.openedPath}`;
+}
 function getFulltextExitCode(result) {
   return result.success ? 0 : 1;
 }
@@ -22005,7 +22068,7 @@ const OPTION_VALUES = {
   "--log-level": LOG_LEVELS
 };
 const ID_COMPLETION_COMMANDS = /* @__PURE__ */ new Set(["cite", "remove", "update"]);
-const ID_COMPLETION_FULLTEXT_SUBCOMMANDS = /* @__PURE__ */ new Set(["attach", "get", "detach"]);
+const ID_COMPLETION_FULLTEXT_SUBCOMMANDS = /* @__PURE__ */ new Set(["attach", "get", "detach", "open"]);
 function toCompletionItems(values) {
   return values.map((name2) => ({ name: name2 }));
 }
@@ -22787,6 +22850,48 @@ async function handleFulltextDetachAction(identifier, options, program) {
     process.exit(4);
   }
 }
+async function handleFulltextOpenAction(identifierArg, options, program) {
+  try {
+    const config2 = await loadConfigWithOverrides(program.opts());
+    let identifier;
+    if (identifierArg) {
+      identifier = identifierArg;
+    } else {
+      if (isTTY()) {
+        process.stderr.write("Error: Identifier is required when running interactively.\n");
+        process.exit(1);
+      }
+      const stdinId = (await readStdinContent()).split("\n")[0]?.trim() ?? "";
+      if (!stdinId) {
+        process.stderr.write("Error: No identifier provided from stdin.\n");
+        process.exit(1);
+      }
+      identifier = stdinId;
+    }
+    const context = await createExecutionContext(config2, Library.load);
+    const openOptions = {
+      identifier,
+      fulltextDirectory: config2.fulltext.directory,
+      ...options.pdf && { type: "pdf" },
+      ...options.markdown && { type: "markdown" },
+      ...options.uuid && { idType: "uuid" }
+    };
+    const result = await executeFulltextOpen(openOptions, context);
+    const output = formatFulltextOpenOutput(result);
+    if (result.success) {
+      process.stderr.write(`${output}
+`);
+    } else {
+      process.stderr.write(`${output}
+`);
+    }
+    process.exit(getFulltextExitCode(result));
+  } catch (error) {
+    process.stderr.write(`Error: ${error instanceof Error ? error.message : String(error)}
+`);
+    process.exit(4);
+  }
+}
 function registerFulltextCommand(program) {
   const fulltextCmd = program.command("fulltext").description("Manage full-text files attached to references");
   fulltextCmd.command("attach").description("Attach a full-text file to a reference").argument("<identifier>", "Citation key or UUID").argument("[file-path]", "Path to the file to attach").option("--pdf [path]", "Attach as PDF (path optional if provided as argument)").option("--markdown [path]", "Attach as Markdown (path optional if provided as argument)").option("--move", "Move file instead of copy").option("-f, --force", "Overwrite existing attachment").option("--uuid", "Interpret identifier as UUID").action(async (identifier, filePath, options) => {
@@ -22798,6 +22903,9 @@ function registerFulltextCommand(program) {
   fulltextCmd.command("detach").description("Detach full-text file from a reference").argument("<identifier>", "Citation key or UUID").option("--pdf", "Detach PDF only").option("--markdown", "Detach Markdown only").option("--delete", "Also delete the file from disk").option("-f, --force", "Skip confirmation for delete").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
     await handleFulltextDetachAction(identifier, options, program);
   });
+  fulltextCmd.command("open").description("Open full-text file with system default application").argument("[identifier]", "Citation key or UUID (reads from stdin if not provided)").option("--pdf", "Open PDF file").option("--markdown", "Open Markdown file").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
+    await handleFulltextOpenAction(identifier, options, program);
+  });
 }
 async function main(argv) {
   const program = createProgram();