@ncukondo/reference-manager 0.5.2 → 0.6.0

package/dist/features/operations/search.d.ts

@@ -1,12 +1,20 @@
 import type { ILibrary } from "../../core/library-interface.js";
+import { type PaginationOptions, type SearchSortField, type SortOrder } from "../pagination/index.js";
 /**
  * Output format options for search operation
  */
 export type SearchFormat = "pretty" | "json" | "bibtex" | "ids-only" | "uuid";
+/**
+ * Sort options for search (includes relevance)
+ */
+export interface SearchSortOptions {
+    sort?: SearchSortField;
+    order?: SortOrder;
+}
 /**
  * Options for searchReferences operation
  */
-export interface SearchOperationOptions {
+export interface SearchOperationOptions extends PaginationOptions, SearchSortOptions {
     /** Search query string */
     query: string;
     /** Output format (default: "pretty") */
@@ -18,13 +26,21 @@ export interface SearchOperationOptions {
 export interface SearchResult {
     /** Formatted strings for each matching reference */
     items: string[];
+    /** Total count before pagination */
+    total: number;
+    /** Applied limit (0 if unlimited) */
+    limit: number;
+    /** Applied offset */
+    offset: number;
+    /** Next page offset, null if no more results */
+    nextOffset: number | null;
 }
 /**
  * Search references in the library and return formatted results.
  *
  * @param library - The library to search in
- * @param options - Search query and formatting options
- * @returns Formatted strings for each matching reference
+ * @param options - Search query, formatting, and pagination options
+ * @returns Formatted strings for each matching reference with pagination metadata
  */
 export declare function searchReferences(library: ILibrary, options: SearchOperationOptions): Promise<SearchResult>;
 //# sourceMappingURL=search.d.ts.map

package/dist/features/operations/search.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../../src/features/operations/search.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAMhE;;GAEG;AACH,MAAM,MAAM,YAAY,GAAG,QAAQ,GAAG,MAAM,GAAG,QAAQ,GAAG,UAAU,GAAG,MAAM,CAAC;AAE9E;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,0BAA0B;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,wCAAwC;IACxC,MAAM,CAAC,EAAE,YAAY,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,oDAAoD;IACpD,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED;;;;;;GAMG;AACH,wBAAsB,gBAAgB,CACpC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,YAAY,CAAC,CA0CvB"}
+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../../src/features/operations/search.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAEhE,OAAO,EACL,KAAK,iBAAiB,EACtB,KAAK,eAAe,EAEpB,KAAK,SAAS,EAGf,MAAM,wBAAwB,CAAC;AAKhC;;GAEG;AACH,MAAM,MAAM,YAAY,GAAG,QAAQ,GAAG,MAAM,GAAG,QAAQ,GAAG,UAAU,GAAG,MAAM,CAAC;AAE9E;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,IAAI,CAAC,EAAE,eAAe,CAAC;IACvB,KAAK,CAAC,EAAE,SAAS,CAAC;CACnB;AAED;;GAEG;AACH,MAAM,WAAW,sBAAuB,SAAQ,iBAAiB,EAAE,iBAAiB;IAClF,0BAA0B;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,wCAAwC;IACxC,MAAM,CAAC,EAAE,YAAY,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,oDAAoD;IACpD,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,oCAAoC;IACpC,KAAK,EAAE,MAAM,CAAC;IACd,qCAAqC;IACrC,KAAK,EAAE,MAAM,CAAC;IACd,qBAAqB;IACrB,MAAM,EAAE,MAAM,CAAC;IACf,gDAAgD;IAChD,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;CAC3B;AA4BD;;;;;;GAMG;AACH,wBAAsB,gBAAgB,CACpC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,YAAY,CAAC,CAuDvB"}

package/dist/features/operations/update.d.ts

@@ -1,13 +1,13 @@
 import type { CslItem } from "../../core/csl-json/types.js";
-import type { ILibrary } from "../../core/library-interface.js";
+import type { ILibrary, IdentifierType } from "../../core/library-interface.js";
 /**
  * Options for updateReference operation
  */
 export interface UpdateOperationOptions {
     /** Reference ID or UUID */
     identifier: string;
-    /** If true, identifier is treated as UUID; otherwise as ID (default: false) */
-    byUuid?: boolean;
+    /** Identifier type: 'id' (default), 'uuid', 'doi', 'pmid', or 'isbn' */
+    idType?: IdentifierType;
     /** Partial updates to apply to the reference */
     updates: Partial<CslItem>;
     /** How to handle ID collision: 'fail' (default) or 'suffix' */

package/dist/features/operations/update.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/features/operations/update.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAEhE;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,2BAA2B;IAC3B,UAAU,EAAE,MAAM,CAAC;IACnB,+EAA+E;IAC/E,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,gDAAgD;IAChD,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;IAC1B,+DAA+D;IAC/D,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,CAAC;CACnC;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,wCAAwC;IACxC,OAAO,EAAE,OAAO,CAAC;IACjB,uCAAuC;IACvC,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,uFAAuF;IACvF,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,6DAA6D;IAC7D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,uEAAuE;IACvE,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;GAMG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,qBAAqB,CAAC,CA8BhC"}
+{"version":3,"file":"update.d.ts","sourceRoot":"","sources":["../../../src/features/operations/update.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEhF;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,2BAA2B;IAC3B,UAAU,EAAE,MAAM,CAAC;IACnB,wEAAwE;IACxE,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,gDAAgD;IAChD,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;IAC1B,+DAA+D;IAC/D,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,CAAC;CACnC;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,wCAAwC;IACxC,OAAO,EAAE,OAAO,CAAC;IACjB,uCAAuC;IACvC,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,uFAAuF;IACvF,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,6DAA6D;IAC7D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,uEAAuE;IACvE,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;GAMG;AACH,wBAAsB,eAAe,CACnC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,sBAAsB,GAC9B,OAAO,CAAC,qBAAqB,CAAC,CA8BhC"}

package/dist/features/pagination/aliases.d.ts

@@ -0,0 +1,14 @@
+/**
+ * Sort field alias resolver
+ */
+import type { SearchSortField } from "./types.js";
+/**
+ * Resolves a sort field alias to its full name.
+ * Passes through valid sort fields unchanged.
+ *
+ * @param alias - The alias or sort field name
+ * @returns The resolved sort field
+ * @throws Error if the alias is unknown
+ */
+export declare function resolveSortAlias(alias: string): SearchSortField;
+//# sourceMappingURL=aliases.d.ts.map

package/dist/features/pagination/aliases.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"aliases.d.ts","sourceRoot":"","sources":["../../../src/features/pagination/aliases.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAkBlD;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,eAAe,CAW/D"}

package/dist/features/pagination/index.d.ts

@@ -0,0 +1,8 @@
+/**
+ * Pagination feature exports
+ */
+export * from "./types.js";
+export { resolveSortAlias } from "./aliases.js";
+export { sortReferences } from "./sorter.js";
+export { paginate, type PaginateOptions, type PaginateResult } from "./paginate.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/features/pagination/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/features/pagination/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,cAAc,YAAY,CAAC;AAC3B,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAChD,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,QAAQ,EAAE,KAAK,eAAe,EAAE,KAAK,cAAc,EAAE,MAAM,eAAe,CAAC"}

package/dist/features/pagination/paginate.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Pagination applier
+ */
+export interface PaginateOptions {
+    limit?: number;
+    offset?: number;
+}
+export interface PaginateResult<T> {
+    items: T[];
+    nextOffset: number | null;
+}
+/**
+ * Apply pagination to an array of items.
+ *
+ * @param items - Items to paginate
+ * @param options - Pagination options (limit=0 or undefined means unlimited)
+ * @returns Paginated items with nextOffset (null if no more items)
+ */
+export declare function paginate<T>(items: T[], options: PaginateOptions): PaginateResult<T>;
+//# sourceMappingURL=paginate.d.ts.map

package/dist/features/pagination/paginate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"paginate.d.ts","sourceRoot":"","sources":["../../../src/features/pagination/paginate.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,MAAM,WAAW,eAAe;IAC9B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc,CAAC,CAAC;IAC/B,KAAK,EAAE,CAAC,EAAE,CAAC;IACX,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;CAC3B;AAED;;;;;;GAMG;AACH,wBAAgB,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE,OAAO,EAAE,eAAe,GAAG,cAAc,CAAC,CAAC,CAAC,CAiCnF"}

package/dist/features/pagination/sorter.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Reference sorter
+ */
+import type { CslItem } from "../../core/csl-json/types.js";
+import type { SortField, SortOrder } from "./types.js";
+/**
+ * Sort references by the specified field and order.
+ * Uses secondary sort: created (desc), then id (asc) for stability.
+ *
+ * @param items - References to sort
+ * @param sort - Sort field
+ * @param order - Sort order
+ * @returns Sorted references (new array, does not mutate input)
+ */
+export declare function sortReferences(items: CslItem[], sort: SortField, order: SortOrder): CslItem[];
+//# sourceMappingURL=sorter.d.ts.map

package/dist/features/pagination/sorter.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"sorter.d.ts","sourceRoot":"","sources":["../../../src/features/pagination/sorter.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAsFvD;;;;;;;;GAQG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,KAAK,EAAE,SAAS,GAAG,OAAO,EAAE,CAmB7F"}

package/dist/features/pagination/types.d.ts

@@ -0,0 +1,74 @@
+/**
+ * Pagination and sorting type definitions
+ */
+import { z } from "zod";
+/**
+ * Sort field for list/search commands
+ */
+export declare const sortFieldSchema: z.ZodEnum<{
+    title: "title";
+    author: "author";
+    updated: "updated";
+    created: "created";
+    published: "published";
+}>;
+export type SortField = z.infer<typeof sortFieldSchema>;
+/**
+ * Sort field for search command (includes relevance)
+ */
+export declare const searchSortFieldSchema: z.ZodEnum<{
+    title: "title";
+    author: "author";
+    updated: "updated";
+    created: "created";
+    published: "published";
+    relevance: "relevance";
+}>;
+export type SearchSortField = z.infer<typeof searchSortFieldSchema>;
+/**
+ * Sort order
+ */
+export declare const sortOrderSchema: z.ZodEnum<{
+    asc: "asc";
+    desc: "desc";
+}>;
+export type SortOrder = z.infer<typeof sortOrderSchema>;
+/**
+ * Pagination options
+ */
+export declare const paginationOptionsSchema: z.ZodObject<{
+    limit: z.ZodOptional<z.ZodNumber>;
+    offset: z.ZodOptional<z.ZodNumber>;
+}, z.core.$strip>;
+export type PaginationOptions = z.infer<typeof paginationOptionsSchema>;
+/**
+ * Sort options
+ */
+export declare const sortOptionsSchema: z.ZodObject<{
+    sort: z.ZodOptional<z.ZodEnum<{
+        title: "title";
+        author: "author";
+        updated: "updated";
+        created: "created";
+        published: "published";
+    }>>;
+    order: z.ZodOptional<z.ZodEnum<{
+        asc: "asc";
+        desc: "desc";
+    }>>;
+}, z.core.$strip>;
+export type SortOptions<T extends string = SortField> = {
+    sort?: T;
+    order?: SortOrder;
+};
+/**
+ * Paginated result
+ */
+export interface PaginatedResult<T> {
+    items: T[];
+    total: number;
+    limit: number;
+    offset: number;
+    nextOffset: number | null;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/features/pagination/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/features/pagination/types.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB;;GAEG;AACH,eAAO,MAAM,eAAe;;;;;;EAAiE,CAAC;AAC9F,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AAExD;;GAEG;AACH,eAAO,MAAM,qBAAqB;;;;;;;EAOhC,CAAC;AACH,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,qBAAqB,CAAC,CAAC;AAEpE;;GAEG;AACH,eAAO,MAAM,eAAe;;;EAA0B,CAAC;AACvD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AAExD;;GAEG;AACH,eAAO,MAAM,uBAAuB;;;iBAGlC,CAAC;AACH,MAAM,MAAM,iBAAiB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,uBAAuB,CAAC,CAAC;AAExE;;GAEG;AACH,eAAO,MAAM,iBAAiB;;;;;;;;;;;;iBAG5B,CAAC;AACH,MAAM,MAAM,WAAW,CAAC,CAAC,SAAS,MAAM,GAAG,SAAS,IAAI;IACtD,IAAI,CAAC,EAAE,CAAC,CAAC;IACT,KAAK,CAAC,EAAE,SAAS,CAAC;CACnB,CAAC;AAEF;;GAEG;AACH,MAAM,WAAW,eAAe,CAAC,CAAC;IAChC,KAAK,EAAE,CAAC,EAAE,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;CAC3B"}

package/dist/index.js

@@ -1,12 +1,12 @@
-import { C as CslLibrarySchema, c as computeFileHash, a as computeHash, n as normalize, s as search, b as sortResults, t as tokenize, d as detectDuplicate } from "./chunks/file-watcher-Dqkw6R7-.js";
-import { e, F, L, R, l, m, g, h, j, k, i, p, f, w } from "./chunks/file-watcher-Dqkw6R7-.js";
+import { C as CslLibrarySchema, c as computeFileHash, a as computeHash, p as pickDefined, n as normalize, s as search, b as sortResults, t as tokenize, d as detectDuplicate } from "./chunks/file-watcher-Cwfnnw92.js";
+import { e, F, L, R, m, o, h, i, k, l, j, f, g, w } from "./chunks/file-watcher-Cwfnnw92.js";
 import { mkdir, readFile, copyFile, stat, unlink, readdir } from "node:fs/promises";
 import { dirname, join } from "node:path";
 import writeFileAtomicLib from "write-file-atomic";
 import { existsSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { fileURLToPath } from "node:url";
-import { b as backupConfigSchema, c as configSchema, d as defaultConfig, g as getDefaultBackupDirectory, a as getDefaultCurrentDirConfigFilename, e as getDefaultLibraryPath, f as getDefaultUserConfigPath, l as loadConfig, h as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-DuzyKV70.js";
+import { b as backupConfigSchema, c as configSchema, d as defaultConfig, g as getDefaultBackupDirectory, a as getDefaultCurrentDirConfigFilename, e as getDefaultLibraryPath, f as getDefaultUserConfigPath, l as loadConfig, h as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-B_ZLxCQW.js";
 function validateCslJson(data) {
   const parseResult = CslLibrarySchema.safeParse(data);
   if (!parseResult.success) {
@@ -120,6 +120,7 @@ const index$4 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.definePrope
   ensureDirectoryExists,
   getBackupDirectory,
   listBackups,
+  pickDefined,
   writeFileAtomic
 }, Symbol.toStringTag, { value: "Module" }));
 const index$3 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.defineProperty({
@@ -378,15 +379,15 @@ export {
   R as Reference,
   index$2 as Search,
   index$4 as Utils,
-  l as ensureCustomMetadata,
-  m as extractUuidFromCustom,
-  g as generateId,
-  h as generateIdWithCollisionCheck,
-  j as generateUuid,
-  k as isValidUuid,
-  i as normalizeText,
-  p as parseCslJson,
-  f as serializeCslJson,
+  m as ensureCustomMetadata,
+  o as extractUuidFromCustom,
+  h as generateId,
+  i as generateIdWithCollisionCheck,
+  k as generateUuid,
+  l as isValidUuid,
+  j as normalizeText,
+  f as parseCslJson,
+  g as serializeCslJson,
   validateCslJson,
   w as writeCslJson
 };

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":["../src/core/csl-json/validator.ts","../src/utils/logger.ts","../src/utils/file.ts","../src/utils/backup.ts","../src/features/merge/three-way.ts"],"sourcesContent":["import { CslItemSchema, CslLibrarySchema } from \"./types\";\nimport type { CslItem, CslLibrary } from \"./types\";\n\n/**\n * Validate CSL-JSON library structure\n * @param data - Data to validate (can be any type)\n * @returns Validated CSL-JSON library\n * @throws Error if validation fails\n */\nexport function validateCslJson(data: unknown): CslLibrary {\n  const parseResult = CslLibrarySchema.safeParse(data);\n\n  if (!parseResult.success) {\n    throw new Error(`Invalid CSL-JSON structure: ${parseResult.error.message}`);\n  }\n\n  return parseResult.data;\n}\n\n/**\n * Validate a single CSL-JSON item\n * @param data - Data to validate (can be any type)\n * @returns Validation result with valid flag and errors\n */\nexport function validateCslItem(data: unknown): {\n  valid: boolean;\n  data?: CslItem;\n  errors?: string[];\n} {\n  const parseResult = CslItemSchema.safeParse(data);\n\n  if (!parseResult.success) {\n    return {\n      valid: false,\n      errors: parseResult.error.issues.map((issue) => issue.message),\n    };\n  }\n\n  return {\n    valid: true,\n    data: parseResult.data,\n  };\n}\n","export type LogLevel = \"silent\" | \"info\" | \"debug\";\n\nexport interface Logger {\n  info(...args: unknown[]): void;\n  debug(...args: unknown[]): void;\n  error(...args: unknown[]): void;\n}\n\nexport function createLogger(level: LogLevel = \"info\"): Logger {\n  const shouldLogInfo = level === \"info\" || level === \"debug\";\n  const shouldLogDebug = level === \"debug\";\n\n  function formatMessage(...args: unknown[]): string {\n    return `${args.map((arg) => String(arg)).join(\" \")}\\n`;\n  }\n\n  return {\n    info(...args: unknown[]): void {\n      if (shouldLogInfo) {\n        process.stderr.write(formatMessage(...args));\n      }\n    },\n\n    debug(...args: unknown[]): void {\n      if (shouldLogDebug) {\n        process.stderr.write(formatMessage(...args));\n      }\n    },\n\n    error(...args: unknown[]): void {\n      process.stderr.write(formatMessage(...args));\n    },\n  };\n}\n","import { mkdir } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\nimport writeFileAtomicLib from \"write-file-atomic\";\n\n/**\n * Write file atomically with parent directory creation\n */\nexport async function writeFileAtomic(filePath: string, content: string): Promise<void> {\n  await ensureDirectoryExists(dirname(filePath));\n  await writeFileAtomicLib(filePath, content, { encoding: \"utf-8\" });\n}\n\n/**\n * Ensure directory exists, creating it recursively if necessary\n */\nexport async function ensureDirectoryExists(dirPath: string): Promise<void> {\n  await mkdir(dirPath, { recursive: true });\n}\n","import { existsSync } from \"node:fs\";\nimport { copyFile, readFile, readdir, stat, unlink } from \"node:fs/promises\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { ensureDirectoryExists } from \"./file\";\n\nexport interface BackupOptions {\n  maxGenerations?: number;\n  maxAgeMs?: number;\n}\n\nconst DEFAULT_MAX_GENERATIONS = 50;\nconst DEFAULT_MAX_AGE_MS = 365 * 24 * 60 * 60 * 1000; // 1 year\n\n/**\n * Get package name from package.json\n */\nasync function resolvePackageName(): Promise<string> {\n  try {\n    const currentFile = fileURLToPath(import.meta.url);\n    let currentDir = dirname(currentFile);\n\n    for (let i = 0; i < 10; i++) {\n      const packageJsonPath = join(currentDir, \"package.json\");\n      if (existsSync(packageJsonPath)) {\n        const content = await readFile(packageJsonPath, \"utf-8\");\n        const pkg = JSON.parse(content);\n        return pkg.name;\n      }\n      currentDir = dirname(currentDir);\n    }\n  } catch {\n    // Fall back to hardcoded name if package.json is not found\n  }\n\n  return \"reference-manager\";\n}\n\nconst packageName = await resolvePackageName();\n\n/**\n * Get backup directory path for a library\n */\nexport function getBackupDirectory(libraryName: string): string {\n  const pkgName = packageName ?? \"reference-manager\";\n  return join(tmpdir(), pkgName, \"backups\", libraryName);\n}\n\n/**\n * Create a backup of the given file\n */\nexport async function createBackup(sourceFile: string, libraryName: string): Promise<string> {\n  const backupDir = getBackupDirectory(libraryName);\n  await ensureDirectoryExists(backupDir);\n\n  const timestamp = Date.now();\n  const backupFileName = `${timestamp}.backup`;\n  const backupPath = join(backupDir, backupFileName);\n\n  await copyFile(sourceFile, backupPath);\n\n  return backupPath;\n}\n\n/**\n * List all backups for a library (sorted by modification time, newest first)\n */\nexport async function listBackups(libraryName: string): Promise<string[]> {\n  const backupDir = getBackupDirectory(libraryName);\n\n  if (!existsSync(backupDir)) {\n    return [];\n  }\n\n  const files = await readdir(backupDir);\n  const backupFiles = files.filter((f) => f.endsWith(\".backup\")).map((f) => join(backupDir, f));\n\n  const filesWithStats = await Promise.all(\n    backupFiles.map(async (file) => {\n      const stats = await stat(file);\n      return { file, mtime: stats.mtimeMs };\n    })\n  );\n\n  filesWithStats.sort((a, b) => b.mtime - a.mtime);\n\n  return filesWithStats.map((f) => f.file);\n}\n\n/**\n * Clean up old backups based on generation count and age\n */\nexport async function cleanupOldBackups(\n  libraryName: string,\n  options?: BackupOptions\n): Promise<void> {\n  const maxGenerations = options?.maxGenerations ?? DEFAULT_MAX_GENERATIONS;\n  const maxAgeMs = options?.maxAgeMs ?? DEFAULT_MAX_AGE_MS;\n\n  const backups = await listBackups(libraryName);\n  const now = Date.now();\n\n  const backupsToDelete: string[] = [];\n\n  for (let i = 0; i < backups.length; i++) {\n    const backupPath = backups[i];\n    if (!backupPath) continue;\n\n    const stats = await stat(backupPath);\n    const age = now - stats.mtimeMs;\n\n    if (i >= maxGenerations || age > maxAgeMs) {\n      backupsToDelete.push(backupPath);\n    }\n  }\n\n  await Promise.all(backupsToDelete.map((backup) => unlink(backup)));\n}\n","/**\n * 3-way merge implementation with Last-Write-Wins (LWW) strategy\n */\n\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport type {\n  FieldConflict,\n  ItemConflict,\n  MergeOptions,\n  MergeResult,\n  MergeStatus,\n} from \"./types.js\";\n\n/**\n * Get UUID from item, with fallback to id if uuid is missing\n */\nfunction getItemUuid(item: CslItem): string {\n  return item.custom?.uuid || item.id || \"unknown\";\n}\n\n/**\n * Get timestamp from item, with fallback to created_at\n */\nfunction getTimestamp(item: CslItem): string {\n  return item.custom?.timestamp || item.custom?.created_at || \"1970-01-01T00:00:00.000Z\";\n}\n\n/**\n * Deep equality check for field values\n */\nfunction deepEqual(a: unknown, b: unknown): boolean {\n  return JSON.stringify(a) === JSON.stringify(b);\n}\n\n/**\n * Resolve a field conflict using LWW or prefer option\n */\nfunction resolveFieldConflict(\n  localValue: unknown,\n  remoteValue: unknown,\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): unknown {\n  if (localTimestamp > remoteTimestamp) {\n    return localValue;\n  }\n  if (remoteTimestamp > localTimestamp) {\n    return remoteValue;\n  }\n  // Timestamps equal: use prefer option or default to local\n  if (options?.prefer === \"remote\") {\n    return remoteValue;\n  }\n  return localValue;\n}\n\n/**\n * Determine conflict resolution type\n */\nfunction determineResolution(\n  fieldConflicts: FieldConflict[],\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): ItemConflict[\"resolution\"] {\n  const hasRealConflicts = fieldConflicts.every((fc) => fc.resolved !== undefined);\n  const localIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && localTimestamp > remoteTimestamp\n  );\n  const remoteIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && remoteTimestamp > localTimestamp\n  );\n\n  if (hasRealConflicts && localIsNewer) return \"auto-lww\";\n  if (hasRealConflicts && remoteIsNewer) return \"auto-lww\";\n  if (options?.prefer === \"local\") return \"prefer-local\";\n  if (options?.prefer === \"remote\") return \"prefer-remote\";\n  return \"unresolved\";\n}\n\n/**\n * Merge a single field from base, local, and remote versions\n */\nfunction mergeField(\n  key: string,\n  baseValue: unknown,\n  localValue: unknown,\n  remoteValue: unknown,\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): { value: unknown; conflict: FieldConflict | null } {\n  const localChanged = !deepEqual(baseValue, localValue);\n  const remoteChanged = !deepEqual(baseValue, remoteValue);\n\n  if (!localChanged && !remoteChanged) {\n    return { value: baseValue, conflict: null };\n  }\n\n  if (localChanged && !remoteChanged) {\n    return { value: localValue, conflict: null };\n  }\n\n  if (!localChanged && remoteChanged) {\n    return { value: remoteValue, conflict: null };\n  }\n\n  // Both changed\n  if (deepEqual(localValue, remoteValue)) {\n    return { value: localValue, conflict: null };\n  }\n\n  // Both changed to different values\n  const resolved = resolveFieldConflict(\n    localValue,\n    remoteValue,\n    localTimestamp,\n    remoteTimestamp,\n    options\n  );\n\n  // Don't record conflicts for 'custom' metadata field\n  if (key === \"custom\") {\n    return { value: resolved, conflict: null };\n  }\n\n  return {\n    value: resolved,\n    conflict: {\n      field: key,\n      base: baseValue,\n      local: localValue,\n      remote: remoteValue,\n      resolved,\n    },\n  };\n}\n\n/**\n * Merge a single item from base, local, and remote versions\n */\nfunction mergeItem(\n  base: CslItem,\n  local: CslItem,\n  remote: CslItem,\n  options?: MergeOptions\n): { merged: CslItem; conflict: ItemConflict | null } {\n  const uuid = getItemUuid(base);\n  const localTimestamp = getTimestamp(local);\n  const remoteTimestamp = getTimestamp(remote);\n\n  const merged: CslItem = { ...base };\n  const fieldConflicts: FieldConflict[] = [];\n\n  // Get all unique keys from all three versions\n  const allKeys = new Set<string>([\n    ...Object.keys(base),\n    ...Object.keys(local),\n    ...Object.keys(remote),\n  ]);\n\n  for (const key of allKeys) {\n    const baseValue = (base as Record<string, unknown>)[key];\n    const localValue = (local as Record<string, unknown>)[key];\n    const remoteValue = (remote as Record<string, unknown>)[key];\n\n    const { value, conflict } = mergeField(\n      key,\n      baseValue,\n      localValue,\n      remoteValue,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    (merged as Record<string, unknown>)[key] = value;\n\n    if (conflict) {\n      fieldConflicts.push(conflict);\n    }\n  }\n\n  // If there are field conflicts, create ItemConflict\n  if (fieldConflicts.length > 0) {\n    const resolution = determineResolution(\n      fieldConflicts,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    return {\n      merged,\n      conflict: {\n        uuid,\n        id: base.id || \"unknown\",\n        fields: fieldConflicts,\n        localTimestamp,\n        remoteTimestamp,\n        resolution,\n      },\n    };\n  }\n\n  return { merged, conflict: null };\n}\n\n/**\n * Build UUID-indexed maps from item arrays\n */\nfunction buildItemMaps(base: CslItem[], local: CslItem[], remote: CslItem[]) {\n  const baseMap = new Map<string, CslItem>();\n  const localMap = new Map<string, CslItem>();\n  const remoteMap = new Map<string, CslItem>();\n\n  for (const item of base) {\n    baseMap.set(getItemUuid(item), item);\n  }\n  for (const item of local) {\n    localMap.set(getItemUuid(item), item);\n  }\n  for (const item of remote) {\n    remoteMap.set(getItemUuid(item), item);\n  }\n\n  return { baseMap, localMap, remoteMap };\n}\n\n/**\n * Handle items that exist in all three versions\n */\nfunction mergeExistingItem(\n  baseItem: CslItem,\n  localItem: CslItem,\n  remoteItem: CslItem,\n  options: MergeOptions | undefined,\n  merged: CslItem[],\n  conflicts: ItemConflict[]\n): void {\n  const { merged: mergedItem, conflict } = mergeItem(baseItem, localItem, remoteItem, options);\n  merged.push(mergedItem);\n  if (conflict) {\n    conflicts.push(conflict);\n  }\n}\n\n/**\n * Handle items added in both local and remote\n */\nfunction handleDualAddition(\n  uuid: string,\n  localItem: CslItem,\n  remoteItem: CslItem,\n  options: MergeOptions | undefined,\n  merged: CslItem[],\n  conflicts: ItemConflict[]\n): void {\n  if (deepEqual(localItem, remoteItem)) {\n    merged.push(localItem);\n  } else {\n    const syntheticBase: CslItem = {\n      id: uuid,\n      type: \"article\",\n      custom: {\n        uuid,\n        created_at: \"1970-01-01T00:00:00.000Z\",\n        timestamp: \"1970-01-01T00:00:00.000Z\",\n      },\n    };\n    const { merged: mergedItem, conflict } = mergeItem(\n      syntheticBase,\n      localItem,\n      remoteItem,\n      options\n    );\n    merged.push(mergedItem);\n    if (conflict) {\n      conflicts.push(conflict);\n    }\n  }\n}\n\n/**\n * Process a single UUID across all three versions\n */\nfunction processItem(\n  uuid: string,\n  baseMap: Map<string, CslItem>,\n  localMap: Map<string, CslItem>,\n  remoteMap: Map<string, CslItem>,\n  options: MergeOptions | undefined,\n  result: {\n    merged: CslItem[];\n    conflicts: ItemConflict[];\n    localOnly: CslItem[];\n    remoteOnly: CslItem[];\n    deletedInLocal: CslItem[];\n    deletedInRemote: CslItem[];\n  }\n): void {\n  const baseItem = baseMap.get(uuid);\n  const localItem = localMap.get(uuid);\n  const remoteItem = remoteMap.get(uuid);\n\n  if (baseItem && localItem && remoteItem) {\n    mergeExistingItem(baseItem, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && remoteItem) {\n    handleDualAddition(uuid, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && !remoteItem) {\n    result.merged.push(localItem);\n    result.localOnly.push(localItem);\n  } else if (!baseItem && !localItem && remoteItem) {\n    result.merged.push(remoteItem);\n    result.remoteOnly.push(remoteItem);\n  } else if (baseItem && !localItem && remoteItem) {\n    result.deletedInLocal.push(baseItem);\n  } else if (baseItem && localItem && !remoteItem) {\n    result.deletedInRemote.push(baseItem);\n  } else if (baseItem && !localItem && !remoteItem) {\n    result.deletedInLocal.push(baseItem);\n    result.deletedInRemote.push(baseItem);\n  }\n}\n\n/**\n * Performs a 3-way merge of CSL-JSON items\n *\n * @param base - Base version (common ancestor)\n * @param local - Local version (current working copy)\n * @param remote - Remote version (incoming changes)\n * @param options - Merge options (e.g., prefer local/remote for tie-breaking)\n * @returns Merge result with merged items and conflict information\n */\nexport function threeWayMerge(\n  base: CslItem[],\n  local: CslItem[],\n  remote: CslItem[],\n  options?: MergeOptions\n): MergeResult {\n  const { baseMap, localMap, remoteMap } = buildItemMaps(base, local, remote);\n\n  const result = {\n    merged: [] as CslItem[],\n    conflicts: [] as ItemConflict[],\n    localOnly: [] as CslItem[],\n    remoteOnly: [] as CslItem[],\n    deletedInLocal: [] as CslItem[],\n    deletedInRemote: [] as CslItem[],\n  };\n\n  const allUuids = new Set<string>([...baseMap.keys(), ...localMap.keys(), ...remoteMap.keys()]);\n\n  for (const uuid of allUuids) {\n    processItem(uuid, baseMap, localMap, remoteMap, options, result);\n  }\n\n  // Determine overall status\n  let status: MergeStatus = \"success\";\n  if (result.conflicts.length > 0) {\n    const hasUnresolved = result.conflicts.some((c) => c.resolution === \"unresolved\");\n    status = hasUnresolved ? \"conflict\" : \"auto-resolved\";\n  }\n\n  return {\n    status,\n    ...result,\n  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FieldConflict[],\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): ItemConflict[\"resolution\"] {\n  const hasRealConflicts = fieldConflicts.every((fc) => fc.resolved !== undefined);\n  const localIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && localTimestamp > remoteTimestamp\n  );\n  const remoteIsNewer = fieldConflicts.some(\n    (fc) => fc.local !== fc.remote && remoteTimestamp > localTimestamp\n  );\n\n  if (hasRealConflicts && localIsNewer) return \"auto-lww\";\n  if (hasRealConflicts && remoteIsNewer) return \"auto-lww\";\n  if (options?.prefer === \"local\") return \"prefer-local\";\n  if (options?.prefer === \"remote\") return \"prefer-remote\";\n  return \"unresolved\";\n}\n\n/**\n * Merge a single field from base, local, and remote versions\n */\nfunction mergeField(\n  key: string,\n  baseValue: unknown,\n  localValue: unknown,\n  remoteValue: unknown,\n  localTimestamp: string,\n  remoteTimestamp: string,\n  options?: MergeOptions\n): { value: unknown; conflict: FieldConflict | null } {\n  const localChanged = !deepEqual(baseValue, localValue);\n  const remoteChanged = !deepEqual(baseValue, remoteValue);\n\n  if (!localChanged && !remoteChanged) {\n    return { value: baseValue, conflict: null };\n  }\n\n  if (localChanged && !remoteChanged) {\n    return { value: localValue, conflict: null };\n  }\n\n  if (!localChanged && remoteChanged) {\n    return { value: remoteValue, conflict: null };\n  }\n\n  // Both changed\n  if (deepEqual(localValue, remoteValue)) {\n    return { value: localValue, conflict: null };\n  }\n\n  // Both changed to different values\n  const resolved = resolveFieldConflict(\n    localValue,\n    remoteValue,\n    localTimestamp,\n    remoteTimestamp,\n    options\n  );\n\n  // Don't record conflicts for 'custom' metadata field\n  if (key === \"custom\") {\n    return { value: resolved, conflict: null };\n  }\n\n  return {\n    value: resolved,\n    conflict: {\n     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const { value, conflict } = mergeField(\n      key,\n      baseValue,\n      localValue,\n      remoteValue,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    (merged as Record<string, unknown>)[key] = value;\n\n    if (conflict) {\n      fieldConflicts.push(conflict);\n    }\n  }\n\n  // If there are field conflicts, create ItemConflict\n  if (fieldConflicts.length > 0) {\n    const resolution = determineResolution(\n      fieldConflicts,\n      localTimestamp,\n      remoteTimestamp,\n      options\n    );\n\n    return {\n      merged,\n      conflict: {\n        uuid,\n        id: base.id || \"unknown\",\n        fields: fieldConflicts,\n        localTimestamp,\n        remoteTimestamp,\n        resolution,\n      },\n    };\n  }\n\n  return { merged, conflict: null };\n}\n\n/**\n * Build UUID-indexed maps from item arrays\n */\nfunction buildItemMaps(base: CslItem[], local: CslItem[], remote: CslItem[]) {\n  const baseMap = new Map<string, CslItem>();\n  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MergeOptions | undefined,\n  merged: CslItem[],\n  conflicts: ItemConflict[]\n): void {\n  if (deepEqual(localItem, remoteItem)) {\n    merged.push(localItem);\n  } else {\n    const syntheticBase: CslItem = {\n      id: uuid,\n      type: \"article\",\n      custom: {\n        uuid,\n        created_at: \"1970-01-01T00:00:00.000Z\",\n        timestamp: \"1970-01-01T00:00:00.000Z\",\n      },\n    };\n    const { merged: mergedItem, conflict } = mergeItem(\n      syntheticBase,\n      localItem,\n      remoteItem,\n      options\n    );\n    merged.push(mergedItem);\n    if (conflict) {\n      conflicts.push(conflict);\n    }\n  }\n}\n\n/**\n * Process a single UUID across all three versions\n */\nfunction processItem(\n  uuid: string,\n  baseMap: Map<string, CslItem>,\n  localMap: Map<string, CslItem>,\n  remoteMap: Map<string, CslItem>,\n  options: MergeOptions | undefined,\n  result: {\n    merged: CslItem[];\n    conflicts: ItemConflict[];\n    localOnly: CslItem[];\n    remoteOnly: CslItem[];\n    deletedInLocal: CslItem[];\n    deletedInRemote: CslItem[];\n  }\n): void {\n  const baseItem = baseMap.get(uuid);\n  const localItem = localMap.get(uuid);\n  const remoteItem = remoteMap.get(uuid);\n\n  if (baseItem && localItem && remoteItem) {\n    mergeExistingItem(baseItem, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && remoteItem) {\n    handleDualAddition(uuid, localItem, remoteItem, options, result.merged, result.conflicts);\n  } else if (!baseItem && localItem && !remoteItem) {\n    result.merged.push(localItem);\n    result.localOnly.push(localItem);\n  } else if (!baseItem && !localItem && remoteItem) {\n    result.merged.push(remoteItem);\n    result.remoteOnly.push(remoteItem);\n  } else if (baseItem && !localItem && remoteItem) {\n    result.deletedInLocal.push(baseItem);\n  } else if (baseItem && localItem && !remoteItem) {\n    result.deletedInRemote.push(baseItem);\n  } else if (baseItem && !localItem && !remoteItem) {\n    result.deletedInLocal.push(baseItem);\n    result.deletedInRemote.push(baseItem);\n  }\n}\n\n/**\n * Performs a 3-way merge of CSL-JSON items\n *\n * @param base - Base version (common ancestor)\n * @param local - Local version (current working copy)\n * @param remote - Remote version (incoming changes)\n * @param options - Merge options (e.g., prefer local/remote for tie-breaking)\n * @returns Merge result with merged items and conflict information\n */\nexport function threeWayMerge(\n  base: CslItem[],\n  local: CslItem[],\n  remote: CslItem[],\n  options?: MergeOptions\n): MergeResult {\n  const { baseMap, localMap, remoteMap } = buildItemMaps(base, local, remote);\n\n  const result = {\n    merged: [] as CslItem[],\n    conflicts: [] as ItemConflict[],\n    localOnly: [] as CslItem[],\n    remoteOnly: [] as CslItem[],\n    deletedInLocal: [] as CslItem[],\n    deletedInRemote: [] as CslItem[],\n  };\n\n  const allUuids = new 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package/dist/mcp/context.d.ts

@@ -1,12 +1,12 @@
 import type { Config } from "../config/schema.js";
-import { Library } from "../core/library.js";
 import { FileWatcher } from "../features/file-watcher/file-watcher.js";
+import type { ILibraryOperations } from "../features/operations/library-operations.js";
 /**
- * MCP context containing library, config, and file watcher.
- * Simplified context for MCP server (no ExecutionContext pattern).
+ * MCP context containing libraryOperations, config, and file watcher.
+ * Uses ILibraryOperations pattern for consistency with CLI (see ADR-009, ADR-010).
  */
 export interface McpContext {
-    library: Library;
+    libraryOperations: ILibraryOperations;
     config: Config;
     fileWatcher: FileWatcher;
     dispose: () => Promise<void>;

package/dist/mcp/context.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../src/mcp/context.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAElD,OAAO,EAAE,WAAW,EAAE,MAAM,0CAA0C,CAAC;AACvE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,8CAA8C,CAAC;AAGvF;;;GAGG;AACH,MAAM,WAAW,UAAU;IACzB,iBAAiB,EAAE,kBAAkB,CAAC;IACtC,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,WAAW,CAAC;IACzB,OAAO,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,CAAC;CAC9B;AAED,MAAM,WAAW,uBAAuB;IACtC,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,wBAAsB,gBAAgB,CAAC,OAAO,EAAE,uBAAuB,GAAG,OAAO,CAAC,UAAU,CAAC,CA6C5F"}

package/dist/mcp/resources/index.d.ts

@@ -1,10 +1,10 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-import type { Library } from "../../core/library.js";
+import type { ILibraryOperations } from "../../features/operations/library-operations.js";
 /**
  * Register all resources with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  */
-export declare function registerAllResources(server: McpServer, getLibrary: () => Library): void;
+export declare function registerAllResources(server: McpServer, getLibraryOperations: () => ILibraryOperations): void;
 //# sourceMappingURL=index.d.ts.map

package/dist/mcp/resources/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/mcp/resources/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAO1F;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAClC,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,GAC7C,IAAI,CAIN"}

package/dist/mcp/resources/library.d.ts

@@ -1,21 +1,21 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-import type { Library } from "../../core/library.js";
+import type { ILibraryOperations } from "../../features/operations/library-operations.js";
 /**
  * Register the references resource with the MCP server.
  * Returns all references as CSL-JSON.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  */
-export declare function registerReferencesResource(server: McpServer, getLibrary: () => Library): void;
+export declare function registerReferencesResource(server: McpServer, getLibraryOperations: () => ILibraryOperations): void;
 /**
  * Register the single reference resource with the MCP server.
  * Returns a single reference by ID.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  */
-export declare function registerReferenceResource(server: McpServer, getLibrary: () => Library): void;
+export declare function registerReferenceResource(server: McpServer, getLibraryOperations: () => ILibraryOperations): void;
 /**
  * Register the styles resource with the MCP server.
  * Returns available citation styles.

package/dist/mcp/resources/library.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"library.d.ts","sourceRoot":"","sources":["../../../src/mcp/resources/library.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAE1F;;;;;;GAMG;AACH,wBAAgB,0BAA0B,CACxC,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,GAC7C,IAAI,CAuBN;AAED;;;;;;GAMG;AACH,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,GAC7C,IAAI,CA0CN;AAED;;;;;GAKG;AACH,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAyB9D"}

package/dist/mcp/tools/add.d.ts

@@ -1,5 +1,5 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-import type { Library } from "../../core/library.js";
+import type { ILibraryOperations } from "../../features/operations/library-operations.js";
 /**
  * Parameters for the add tool
  */
@@ -11,7 +11,7 @@ export interface AddToolParams {
  * Register the add tool with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  */
-export declare function registerAddTool(server: McpServer, getLibrary: () => Library): void;
+export declare function registerAddTool(server: McpServer, getLibraryOperations: () => ILibraryOperations): void;
 //# sourceMappingURL=add.d.ts.map

package/dist/mcp/tools/add.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"add.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/add.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAGzE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAE1F;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,0EAA0E;IAC1E,KAAK,EAAE,MAAM,GAAG,MAAM,EAAE,CAAC;CAC1B;AAqCD;;;;;GAKG;AACH,wBAAgB,eAAe,CAC7B,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,GAC7C,IAAI,CAkCN"}

package/dist/mcp/tools/cite.d.ts

@@ -1,5 +1,5 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-import type { Library } from "../../core/library.js";
+import type { ILibraryOperations } from "../../features/operations/library-operations.js";
 export interface CiteToolParams {
     ids: string[];
     style?: string | undefined;
@@ -9,7 +9,7 @@ export interface CiteToolParams {
  * Register the cite tool with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  */
-export declare function registerCiteTool(server: McpServer, getLibrary: () => Library): void;
+export declare function registerCiteTool(server: McpServer, getLibraryOperations: () => ILibraryOperations): void;
 //# sourceMappingURL=cite.d.ts.map

package/dist/mcp/tools/cite.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cite.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/cite.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAGrD,MAAM,WAAW,cAAc;IAC7B,GAAG,EAAE,MAAM,EAAE,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAAC;CACtC;AAED;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,OAAO,GAAG,IAAI,CAkCnF"}
+{"version":3,"file":"cite.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/cite.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAE1F,MAAM,WAAW,cAAc;IAC7B,GAAG,EAAE,MAAM,EAAE,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAAC;CACtC;AAED;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAC9B,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,GAC7C,IAAI,CAkCN"}

package/dist/mcp/tools/fulltext.d.ts

@@ -1,6 +1,6 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import type { Config } from "../../config/schema.js";
-import type { Library } from "../../core/library.js";
+import type { ILibraryOperations } from "../../features/operations/library-operations.js";
 /**
  * Parameters for the fulltext_attach tool
  */
@@ -28,24 +28,24 @@ export interface FulltextDetachToolParams {
  * Register the fulltext_attach tool with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  * @param getConfig - Function to get the current config
  */
-export declare function registerFulltextAttachTool(server: McpServer, getLibrary: () => Library, getConfig: () => Config): void;
+export declare function registerFulltextAttachTool(server: McpServer, getLibraryOperations: () => ILibraryOperations, getConfig: () => Config): void;
 /**
  * Register the fulltext_get tool with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  * @param getConfig - Function to get the current config
  */
-export declare function registerFulltextGetTool(server: McpServer, getLibrary: () => Library, getConfig: () => Config): void;
+export declare function registerFulltextGetTool(server: McpServer, getLibraryOperations: () => ILibraryOperations, getConfig: () => Config): void;
 /**
  * Register the fulltext_detach tool with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  * @param getConfig - Function to get the current config
  */
-export declare function registerFulltextDetachTool(server: McpServer, getLibrary: () => Library, getConfig: () => Config): void;
+export declare function registerFulltextDetachTool(server: McpServer, getLibraryOperations: () => ILibraryOperations, getConfig: () => Config): void;
 //# sourceMappingURL=fulltext.d.ts.map

package/dist/mcp/tools/fulltext.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"fulltext.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/fulltext.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAE1F;;GAEG;AACH,MAAM,WAAW,wBAAwB;IACvC,mBAAmB;IACnB,EAAE,EAAE,MAAM,CAAC;IACX,iCAAiC;IACjC,IAAI,EAAE,MAAM,CAAC;CACd;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,mBAAmB;IACnB,EAAE,EAAE,MAAM,CAAC;CACZ;AAED;;GAEG;AACH,MAAM,WAAW,wBAAwB;IACvC,mBAAmB;IACnB,EAAE,EAAE,MAAM,CAAC;CACZ;AAED;;;;;;GAMG;AACH,wBAAgB,0BAA0B,CACxC,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,EAC9C,SAAS,EAAE,MAAM,MAAM,GACtB,IAAI,CAuCN;AAED;;;;;;GAMG;AACH,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,EAC9C,SAAS,EAAE,MAAM,MAAM,GACtB,IAAI,CAgEN;AAED;;;;;;GAMG;AACH,wBAAgB,0BAA0B,CACxC,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,EAC9C,SAAS,EAAE,MAAM,MAAM,GACtB,IAAI,CAqCN"}

package/dist/mcp/tools/index.d.ts

@@ -1,12 +1,12 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import type { Config } from "../../config/schema.js";
-import type { Library } from "../../core/library.js";
+import type { ILibraryOperations } from "../../features/operations/library-operations.js";
 /**
  * Register all tools with the MCP server.
  *
  * @param server - The MCP server instance
- * @param getLibrary - Function to get the current library instance
+ * @param getLibraryOperations - Function to get the current library operations instance
  * @param getConfig - Function to get the current config (required for fulltext tools)
  */
-export declare function registerAllTools(server: McpServer, getLibrary: () => Library, getConfig: () => Config): void;
+export declare function registerAllTools(server: McpServer, getLibraryOperations: () => ILibraryOperations, getConfig: () => Config): void;
 //# sourceMappingURL=index.d.ts.map

package/dist/mcp/tools/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAYrD;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAC9B,MAAM,EAAE,SAAS,EACjB,UAAU,EAAE,MAAM,OAAO,EACzB,SAAS,EAAE,MAAM,MAAM,GACtB,IAAI,CASN"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iDAAiD,CAAC;AAY1F;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAC9B,MAAM,EAAE,SAAS,EACjB,oBAAoB,EAAE,MAAM,kBAAkB,EAC9C,SAAS,EAAE,MAAM,MAAM,GACtB,IAAI,CASN"}