@ncukondo/reference-manager 0.5.1 → 0.5.3

package/dist/cli.js

@@ -1,19 +1,19 @@
 import { Command } from "commander";
 import { ZodOptional as ZodOptional$2, z } from "zod";
-import { L as Library, F as FileWatcher } from "./chunks/file-watcher-Dqkw6R7-.js";
+import { L as Library, F as FileWatcher } from "./chunks/file-watcher-CBAbblss.js";
 import { promises, existsSync, mkdtempSync, writeFileSync, readFileSync } from "node:fs";
 import * as os from "node:os";
 import { tmpdir } from "node:os";
 import * as path from "node:path";
 import { join, extname } from "node:path";
 import { mkdir, unlink, rename, copyFile, rm, readFile } from "node:fs/promises";
-import { u as updateReference, g as getDefaultExportFromCjs, B as BUILTIN_STYLES, a as addReferences, c as citeReferences, l as listReferences, r as removeReference, s as searchReferences, b as startServerWithFileWatcher } from "./chunks/index-9dyK2f9_.js";
+import { u as updateReference, B as BUILTIN_STYLES, a as addReferences, c as citeReferences, l as listReferences, r as removeReference, s as searchReferences, b as startServerWithFileWatcher } from "./chunks/index-Bl_mOQRe.js";
 import process$1, { stdin, stdout } from "node:process";
 import { l as loadConfig } from "./chunks/loader-DuzyKV70.js";
 import { spawn } from "node:child_process";
 import { serve } from "@hono/node-server";
 const name = "@ncukondo/reference-manager";
-const version$1 = "0.5.1";
+const version$1 = "0.5.3";
 const description$1 = "A local reference management tool using CSL-JSON as the single source of truth";
 const packageJson = {
   name,
@@ -163,7 +163,7 @@ async function validateOptions$2(options) {
 function buildCiteOptions(options) {
   return {
     identifiers: options.identifiers,
-    ...options.uuid !== void 0 && { byUuid: options.uuid },
+    ...options.uuid && { idType: "uuid" },
     ...options.style !== void 0 && { style: options.style },
     ...options.cslFile !== void 0 && { cslFile: options.cslFile },
     ...options.locale !== void 0 && { locale: options.locale },
@@ -451,11 +451,11 @@ async function fulltextAttach(library, options) {
     type: explicitType,
     move,
     force,
-    byUuid = false,
+    idType = "id",
     fulltextDirectory,
     stdinContent
   } = options;
-  const item = await library.find(identifier, { byUuid });
+  const item = await library.find(identifier, { idType });
   if (!item) {
     return { success: false, error: `Reference '${identifier}' not found` };
   }
@@ -482,7 +482,7 @@ async function fulltextAttach(library, options) {
       updates: {
         custom: { fulltext: newFulltext }
       },
-      byUuid
+      idType
     });
     await cleanupTempDir(tempDir);
     return {
@@ -528,8 +528,8 @@ function getFilePaths(manager, item, types2, identifier) {
   return { success: true, paths };
 }
 async function fulltextGet(library, options) {
-  const { identifier, type: type2, stdout: stdout2, byUuid = false, fulltextDirectory } = options;
-  const item = await library.find(identifier, { byUuid });
+  const { identifier, type: type2, stdout: stdout2, idType = "id", fulltextDirectory } = options;
+  const item = await library.find(identifier, { idType });
   if (!item) {
     return { success: false, error: `Reference '${identifier}' not found` };
   }
@@ -573,8 +573,8 @@ function handleDetachError(error) {
   throw error;
 }
 async function fulltextDetach(library, options) {
-  const { identifier, type: type2, delete: deleteFile, byUuid = false, fulltextDirectory } = options;
-  const item = await library.find(identifier, { byUuid });
+  const { identifier, type: type2, delete: deleteFile, idType = "id", fulltextDirectory } = options;
+  const item = await library.find(identifier, { idType });
   if (!item) {
     return { success: false, error: `Reference '${identifier}' not found` };
   }
@@ -596,7 +596,7 @@ async function fulltextDetach(library, options) {
       updates: {
         custom: { fulltext: updatedFulltext }
       },
-      byUuid
+      idType
     });
     const resultData = { success: true, detached };
     if (deleted.length > 0) {
@@ -614,7 +614,7 @@ async function executeFulltextAttach(options, context) {
     type: options.type,
     move: options.move,
     force: options.force,
-    byUuid: options.byUuid,
+    idType: options.idType,
     fulltextDirectory: options.fulltextDirectory,
     stdinContent: options.stdinContent
   };
@@ -625,7 +625,7 @@ async function executeFulltextGet(options, context) {
     identifier: options.identifier,
     type: options.type,
     stdout: options.stdout,
-    byUuid: options.byUuid,
+    idType: options.idType,
     fulltextDirectory: options.fulltextDirectory
   };
   return fulltextGet(context.library, operationOptions);
@@ -635,7 +635,7 @@ async function executeFulltextDetach(options, context) {
     identifier: options.identifier,
     type: options.type,
     delete: options.delete,
-    byUuid: options.byUuid,
+    idType: options.idType,
     fulltextDirectory: options.fulltextDirectory
   };
   return fulltextDetach(context.library, operationOptions);
@@ -12494,6 +12494,9 @@ function mergeCapabilities(base, additional) {
   }
   return result;
 }
+function getDefaultExportFromCjs(x) {
+  return x && x.__esModule && Object.prototype.hasOwnProperty.call(x, "default") ? x["default"] : x;
+}
 var ajv = { exports: {} };
 var core$1 = {};
 var validate = {};
@@ -21330,8 +21333,8 @@ async function mcpStart(options) {
   return result;
 }
 async function executeRemove(options, context) {
-  const { identifier, byUuid = false } = options;
-  return context.library.remove(identifier, { byUuid });
+  const { identifier, idType = "id" } = options;
+  return context.library.remove(identifier, { idType });
 }
 function formatRemoveOutput(result, identifier) {
   if (!result.removed) {
@@ -21491,8 +21494,8 @@ async function serverStatus(portfilePath) {
   return result;
 }
 async function executeUpdate(options, context) {
-  const { identifier, updates, byUuid = false } = options;
-  return context.library.update(identifier, updates, { byUuid });
+  const { identifier, updates, idType = "id" } = options;
+  return context.library.update(identifier, updates, { idType });
 }
 function formatUpdateOutput(result, identifier) {
   if (!result.updated) {
@@ -21538,19 +21541,19 @@ class OperationsLibrary {
   }
   // High-level operations
   async search(options) {
-    const { searchReferences: searchReferences2 } = await import("./chunks/index-9dyK2f9_.js").then((n) => n.i);
+    const { searchReferences: searchReferences2 } = await import("./chunks/index-Bl_mOQRe.js").then((n) => n.h);
     return searchReferences2(this.library, options);
   }
   async list(options) {
-    const { listReferences: listReferences2 } = await import("./chunks/index-9dyK2f9_.js").then((n) => n.h);
+    const { listReferences: listReferences2 } = await import("./chunks/index-Bl_mOQRe.js").then((n) => n.g);
     return listReferences2(this.library, options ?? {});
   }
   async cite(options) {
-    const { citeReferences: citeReferences2 } = await import("./chunks/index-9dyK2f9_.js").then((n) => n.f);
+    const { citeReferences: citeReferences2 } = await import("./chunks/index-Bl_mOQRe.js").then((n) => n.f);
     return citeReferences2(this.library, options);
   }
   async import(inputs, options) {
-    const { addReferences: addReferences2 } = await import("./chunks/index-9dyK2f9_.js").then((n) => n.e);
+    const { addReferences: addReferences2 } = await import("./chunks/index-Bl_mOQRe.js").then((n) => n.e);
     return addReferences2(inputs, this.library, options ?? {});
   }
 }
@@ -21576,12 +21579,12 @@ class ServerClient {
   /**
    * Find reference by citation ID or UUID.
    * @param identifier - Citation ID or UUID
-   * @param options - Find options (byUuid to use UUID lookup)
+   * @param options - Find options (idType to specify identifier type)
    * @returns CSL item or undefined if not found
    */
   async find(identifier, options = {}) {
-    const { byUuid = false } = options;
-    const url = byUuid ? `${this.baseUrl}/api/references/uuid/${encodeURIComponent(identifier)}` : `${this.baseUrl}/api/references/id/${encodeURIComponent(identifier)}`;
+    const { idType = "id" } = options;
+    const url = idType === "uuid" ? `${this.baseUrl}/api/references/uuid/${encodeURIComponent(identifier)}` : `${this.baseUrl}/api/references/id/${encodeURIComponent(identifier)}`;
     const response = await fetch(url);
     if (response.status === 404) {
       return void 0;
@@ -21615,12 +21618,12 @@ class ServerClient {
    * Update reference by citation ID or UUID.
    * @param identifier - Citation ID or UUID
    * @param updates - Partial CSL item with fields to update
-   * @param options - Update options (byUuid to use UUID lookup, onIdCollision for collision handling)
+   * @param options - Update options (idType to specify identifier type, onIdCollision for collision handling)
    * @returns Update result with updated item, success status, and any ID changes
    */
   async update(identifier, updates, options) {
-    const { byUuid = false, onIdCollision } = options ?? {};
-    const url = byUuid ? `${this.baseUrl}/api/references/uuid/${encodeURIComponent(identifier)}` : `${this.baseUrl}/api/references/id/${encodeURIComponent(identifier)}`;
+    const { idType = "id", onIdCollision } = options ?? {};
+    const url = idType === "uuid" ? `${this.baseUrl}/api/references/uuid/${encodeURIComponent(identifier)}` : `${this.baseUrl}/api/references/id/${encodeURIComponent(identifier)}`;
     const response = await fetch(url, {
       method: "PUT",
       headers: { "Content-Type": "application/json" },
@@ -21640,12 +21643,12 @@ class ServerClient {
   /**
    * Remove a reference by citation ID or UUID.
    * @param identifier - The citation ID or UUID of the reference to remove
-   * @param options - Remove options (byUuid to use UUID lookup)
+   * @param options - Remove options (idType to specify identifier type)
    * @returns Remove result with removed status and removedItem
    */
   async remove(identifier, options = {}) {
-    const { byUuid = false } = options;
-    const url = byUuid ? `${this.baseUrl}/api/references/uuid/${encodeURIComponent(identifier)}` : `${this.baseUrl}/api/references/id/${encodeURIComponent(identifier)}`;
+    const { idType = "id" } = options;
+    const url = idType === "uuid" ? `${this.baseUrl}/api/references/uuid/${encodeURIComponent(identifier)}` : `${this.baseUrl}/api/references/id/${encodeURIComponent(identifier)}`;
     const response = await fetch(url, {
       method: "DELETE"
     });
@@ -21987,12 +21990,16 @@ async function handleAddAction(inputs, options, program) {
   }
 }
 function registerAddCommand(program) {
-  program.command("add").description("Add new reference(s) to the library").argument("[input...]", "File paths or identifiers (PMID/DOI), or use stdin").option("-f, --force", "Skip duplicate detection").option("--format <format>", "Explicit input format: json|bibtex|ris|pmid|doi|auto", "auto").option("--verbose", "Show detailed error information").action(async (inputs, options) => {
+  program.command("add").description("Add new reference(s) to the library").argument("[input...]", "File paths or identifiers (PMID/DOI/ISBN), or use stdin").option("-f, --force", "Skip duplicate detection").option(
+    "--format <format>",
+    "Explicit input format: json|bibtex|ris|pmid|doi|isbn|auto",
+    "auto"
+  ).option("--verbose", "Show detailed error information").action(async (inputs, options) => {
     await handleAddAction(inputs, options, program);
   });
 }
-async function findReferenceToRemove(identifier, byUuid, context) {
-  return context.library.find(identifier, { byUuid });
+async function findReferenceToRemove(identifier, useUuid, context) {
+  return context.library.find(identifier, { idType: useUuid ? "uuid" : "id" });
 }
 async function confirmRemoval(refToRemove, force, fulltextWarning) {
   if (force || !isTTY()) {
@@ -22060,8 +22067,8 @@ async function handleRemoveAction(identifier, options, program) {
     const removeOptions = {
       identifier
     };
-    if (options.uuid !== void 0) {
-      removeOptions.byUuid = options.uuid;
+    if (options.uuid) {
+      removeOptions.idType = "uuid";
     }
     const result = await executeRemove(removeOptions, context);
     const output = formatRemoveOutput(result, identifier);
@@ -22115,8 +22122,8 @@ async function handleUpdateAction(identifier, file, options, program) {
       identifier,
       updates: validatedUpdates
     };
-    if (options.uuid !== void 0) {
-      updateOptions.byUuid = options.uuid;
+    if (options.uuid) {
+      updateOptions.idType = "uuid";
     }
     const result = await executeUpdate(updateOptions, context);
     const output = formatUpdateOutput(result, identifier);
@@ -22296,7 +22303,7 @@ async function handleFulltextAttachAction(identifier, filePathArg, options, prog
       ...type2 && { type: type2 },
       ...options.move && { move: options.move },
       ...options.force && { force: options.force },
-      ...options.uuid && { byUuid: options.uuid },
+      ...options.uuid && { idType: "uuid" },
       ...stdinContent && { stdinContent }
     };
     const result = await executeFulltextAttach(attachOptions, context);
@@ -22321,7 +22328,7 @@ async function handleFulltextGetAction(identifier, options, program) {
       ...options.pdf && { type: "pdf" },
       ...options.markdown && { type: "markdown" },
       ...options.stdout && { stdout: options.stdout },
-      ...options.uuid && { byUuid: options.uuid }
+      ...options.uuid && { idType: "uuid" }
     };
     const result = await executeFulltextGet(getOptions, context);
     if (result.success && result.content && options.stdout) {
@@ -22355,7 +22362,7 @@ async function handleFulltextDetachAction(identifier, options, program) {
       ...options.markdown && { type: "markdown" },
       ...options.delete && { delete: options.delete },
       ...options.force && { force: options.force },
-      ...options.uuid && { byUuid: options.uuid }
+      ...options.uuid && { idType: "uuid" }
     };
     const result = await executeFulltextDetach(detachOptions, context);
     const output = formatFulltextDetachOutput(result);