@ncukondo/reference-manager 0.25.0 → 0.26.0

package/dist/chunks/{index-CYEise6v.js → index-tdmbNN9b.js}

@@ -1,8 +1,8 @@
 import { useApp, Box, render } from "ink";
 import { useState, useEffect, createElement } from "react";
-import { getActionChoices, OUTPUT_FORMAT_CHOICES, STYLE_CHOICES, isSideEffectAction, generateOutput } from "./action-menu-DD0RtNVD.js";
-import { S as SearchableMultiSelect, t as toChoice$1, c as calculateEffectiveLimit, f as formatAuthors, a as formatIdentifiers } from "./SearchableMultiSelect-B7qEWPDT.js";
-import { S as Select, r as restoreStdinAfterInk } from "./index-QTYx5RaF.js";
+import { getActionChoices, OUTPUT_FORMAT_CHOICES, STYLE_CHOICES, isSideEffectAction, generateOutput } from "./action-menu-DWdoHTFh.js";
+import { S as SearchableMultiSelect, t as toChoice$1, c as calculateEffectiveLimit, f as formatAuthors, a as formatIdentifiers } from "./SearchableMultiSelect-D2IzthN4.js";
+import { S as Select, r as restoreStdinAfterInk } from "./index-BEQ4YIXx.js";
 function SearchFlowApp({
   choices,
   filterFn,
@@ -392,4 +392,4 @@ export {
   runCiteFlow,
   runSearchFlow
 };
-//# sourceMappingURL=index-CYEise6v.js.map
+//# sourceMappingURL=index-tdmbNN9b.js.map

package/dist/chunks/{index-CYEise6v.js.map → index-tdmbNN9b.js.map}

@@ -1 +1 @@
-{"version":3,"file":"index-CYEise6v.js","sources":["../../src/features/interactive/apps/SearchFlowApp.tsx","../../src/features/interactive/apps/runSearchFlow.ts","../../src/features/interactive/apps/CiteFlowApp.tsx","../../src/features/interactive/apps/runCiteFlow.ts"],"sourcesContent":["/**\n * SearchFlowApp - Single App for search -t flow\n *\n * Manages state transitions: search → action → (style/output-format if needed)\n * Following React Ink Single App Pattern (ADR-015)\n */\n\nimport { Box, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement, useEffect, useState } from \"react\";\nimport type { CitationKeyFormat } from \"../../../config/schema.js\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport {\n  type ActionMenuResult,\n  type ActionType,\n  OUTPUT_FORMAT_CHOICES,\n  type OutputFormatType,\n  STYLE_CHOICES,\n  generateOutput,\n  getActionChoices,\n  isSideEffectAction,\n} from \"../action-menu.js\";\nimport {\n  type Choice,\n  SearchableMultiSelect,\n  Select,\n  type SortOption,\n} from \"../components/index.js\";\n\n/**\n * Flow states for the search flow\n */\ntype FlowState = \"search\" | \"action\" | \"style\" | \"output-format\" | \"exiting\";\n\n/**\n * Props for SearchFlowApp\n */\nexport interface SearchFlowAppProps {\n  /** Choices for the search prompt */\n  choices: Choice<CslItem>[];\n  /** Filter function for search */\n  filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n  /** Number of visible items */\n  visibleCount: number;\n  /** Default sort option */\n  defaultSort: SortOption;\n  /** Default citation key format */\n  defaultKeyFormat: CitationKeyFormat;\n  /** Default citation style */\n  defaultStyle: string;\n  /** Debounce delay in milliseconds for search filtering */\n  debounceMs?: number;\n  /** Callback when flow completes */\n  onComplete: (result: ActionMenuResult) => void;\n  /** Callback when flow is cancelled */\n  onCancel: () => void;\n}\n\n/**\n * SearchFlowApp component\n *\n * Single App that manages search → action → style/output-format flow\n */\nexport function SearchFlowApp({\n  choices,\n  filterFn,\n  visibleCount,\n  defaultSort,\n  defaultKeyFormat,\n  defaultStyle,\n  debounceMs,\n  onComplete,\n  onCancel,\n}: SearchFlowAppProps): React.ReactElement {\n  const { exit } = useApp();\n  const [state, setState] = useState<FlowState>(\"search\");\n  const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n  const [pendingResult, setPendingResult] = useState<ActionMenuResult | null>(null);\n\n  // Exit when entering \"exiting\" state (after rendering empty component)\n  useEffect(() => {\n    if (state === \"exiting\" && pendingResult) {\n      exit();\n      if (pendingResult.cancelled) {\n        onCancel();\n      } else {\n        onComplete(pendingResult);\n      }\n    }\n  }, [state, pendingResult, exit, onCancel, onComplete]);\n\n  // Transition to exiting state with result\n  const exitWith = (result: ActionMenuResult) => {\n    setPendingResult(result);\n    setState(\"exiting\");\n  };\n\n  // Handle search submission\n  const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n    if (selected.length === 0) {\n      exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n      return;\n    }\n    setSelectedItems(selected.map((c) => c.value));\n    setState(\"action\");\n  };\n\n  // Handle search cancel\n  const handleSearchCancel = () => {\n    exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n  };\n\n  // Handle action selection\n  const handleActionSelect = (action: ActionType) => {\n    if (action === \"cancel\") {\n      exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n      return;\n    }\n\n    // If cite-choose, go to style selection\n    if (action === \"cite-choose\") {\n      setState(\"style\");\n      return;\n    }\n\n    // If output-format, go to output format submenu\n    if (action === \"output-format\") {\n      setState(\"output-format\");\n      return;\n    }\n\n    // Handle side-effect actions\n    if (isSideEffectAction(action)) {\n      exitWith({ action, output: \"\", cancelled: false, selectedItems });\n      return;\n    }\n\n    // Generate output and complete\n    const output = generateOutput(action, selectedItems, {\n      defaultKeyFormat,\n      defaultStyle,\n    });\n    exitWith({ action, output, cancelled: false });\n  };\n\n  // Handle action cancel (go back to search)\n  const handleActionCancel = () => {\n    setState(\"search\");\n  };\n\n  // Handle style selection\n  const handleStyleSelect = (style: string) => {\n    const output = generateOutput(\"cite-choose\", selectedItems, {\n      defaultKeyFormat,\n      defaultStyle: style,\n    });\n    exitWith({ action: \"cite-choose\", output, cancelled: false });\n  };\n\n  // Handle style cancel (go back to action)\n  const handleStyleCancel = () => {\n    setState(\"action\");\n  };\n\n  // Handle output format selection\n  const handleOutputFormatSelect = (format: OutputFormatType) => {\n    if (format === \"cancel\") {\n      setState(\"action\");\n      return;\n    }\n\n    const output = generateOutput(format, selectedItems, {\n      defaultKeyFormat,\n      defaultStyle,\n    });\n    exitWith({ action: \"output-format\", output, cancelled: false });\n  };\n\n  // Handle output format cancel (go back to action)\n  const handleOutputFormatCancel = () => {\n    setState(\"action\");\n  };\n\n  // Render based on current state\n  if (state === \"exiting\") {\n    // Empty component - Ink will clear the previous content\n    return createElement(Box);\n  }\n\n  if (state === \"search\") {\n    return createElement(SearchableMultiSelect<CslItem>, {\n      choices,\n      filterFn,\n      visibleCount,\n      onSubmit: handleSearchSubmit,\n      onCancel: handleSearchCancel,\n      header: \"Search references\",\n      placeholder: \"Type to search...\",\n      defaultSort,\n      ...(debounceMs !== undefined && { debounceMs }),\n    });\n  }\n\n  if (state === \"action\") {\n    const count = selectedItems.length;\n    const refWord = count === 1 ? \"reference\" : \"references\";\n    return createElement(Select<ActionType>, {\n      key: \"action\",\n      options: getActionChoices(count, { defaultKeyFormat }),\n      message: `Action for ${count} selected ${refWord}:`,\n      onSelect: handleActionSelect,\n      onCancel: handleActionCancel,\n    });\n  }\n\n  if (state === \"output-format\") {\n    return createElement(Select<OutputFormatType>, {\n      key: \"output-format\",\n      options: OUTPUT_FORMAT_CHOICES,\n      message: \"Select output format:\",\n      onSelect: handleOutputFormatSelect,\n      onCancel: handleOutputFormatCancel,\n    });\n  }\n\n  // state === \"style\"\n  return createElement(Select<string>, {\n    key: \"style\",\n    options: STYLE_CHOICES,\n    message: \"Select citation style:\",\n    onSelect: handleStyleSelect,\n    onCancel: handleStyleCancel,\n  });\n}\n","/**\n * Runner for SearchFlowApp\n *\n * Provides the public API for running the search flow.\n */\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type { CitationKeyFormat } from \"../../../config/schema.js\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport type { SearchResult } from \"../../search/types.js\";\nimport type { ActionMenuResult } from \"../action-menu.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport { toChoice } from \"../choice-builder.js\";\nimport { type Choice, type SortOption, calculateEffectiveLimit } from \"../components/index.js\";\nimport { SearchFlowApp } from \"./SearchFlowApp.js\";\n\n/**\n * Configuration for the search flow\n */\nexport interface SearchFlowConfig {\n  /** Maximum number of results to display */\n  limit: number;\n  /** Debounce delay in milliseconds for search filtering */\n  debounceMs: number;\n  /** Default citation key format */\n  defaultKeyFormat?: CitationKeyFormat;\n  /** Default citation style */\n  defaultStyle?: string;\n}\n\n/**\n * Search function type for filtering references\n */\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/**\n * Run the search flow (search → action → style if needed)\n *\n * This is the main entry point for the `search -t` command.\n */\nexport async function runSearchFlow(\n  allReferences: CslItem[],\n  searchFn: SearchFunction,\n  config: SearchFlowConfig\n): Promise<ActionMenuResult> {\n  // Convert references to choices and build lookup map\n  const choices = allReferences.map(toChoice);\n  const choiceMap = new Map(choices.map((c) => [c.id, c]));\n\n  // Calculate effective visible count\n  const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n  // Create filter function using the provided search function\n  const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n    if (!query.trim()) return choices;\n\n    const results = searchFn(query);\n    return results.flatMap((r) => {\n      const choice = choiceMap.get(r.reference.id);\n      return choice ? [choice] : [];\n    });\n  };\n\n  // Default sort option\n  const defaultSort: SortOption = \"updated-desc\";\n\n  // Create a promise to capture the result\n  return new Promise<ActionMenuResult>((resolve) => {\n    let flowResult: ActionMenuResult = {\n      action: \"cancel\",\n      output: \"\",\n      cancelled: true,\n    };\n\n    const handleComplete = (result: ActionMenuResult): void => {\n      flowResult = result;\n    };\n\n    const handleCancel = (): void => {\n      flowResult = {\n        action: \"cancel\",\n        output: \"\",\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app (single render for entire flow)\n    const { waitUntilExit } = render(\n      createElement(SearchFlowApp, {\n        choices,\n        filterFn,\n        visibleCount: effectiveLimit,\n        defaultSort,\n        defaultKeyFormat: config.defaultKeyFormat ?? \"pandoc\",\n        defaultStyle: config.defaultStyle ?? \"apa\",\n        debounceMs: config.debounceMs,\n        onComplete: handleComplete,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, then resolve\n    waitUntilExit()\n      .then(() => {\n        restoreStdinAfterInk();\n        resolve(flowResult);\n      })\n      .catch(() => {\n        restoreStdinAfterInk();\n        resolve({\n          action: \"cancel\",\n          output: \"\",\n          cancelled: true,\n        });\n      });\n  });\n}\n","/**\n * CiteFlowApp - Single App for cite command flow\n *\n * Implements the Single App Pattern (ADR-015) for the cite command.\n * Manages state transitions: reference selection → style selection → exiting\n */\n\nimport { Box, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement, useEffect, useState } from \"react\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport { SearchableMultiSelect } from \"../components/SearchableMultiSelect.js\";\nimport { Select, type SelectOption } from \"../components/Select.js\";\nimport type { Choice, SortOption } from \"../components/index.js\";\n\n// Flow states\ntype FlowState = \"search\" | \"style\" | \"exiting\";\n\n/**\n * Result from the cite flow\n */\nexport interface CiteFlowResult {\n  /** Selected reference IDs */\n  identifiers: string[];\n  /** Selected style (if style selection was shown) */\n  style?: string;\n  /** Whether the flow was cancelled */\n  cancelled: boolean;\n}\n\n/**\n * Props for CiteFlowApp\n */\nexport interface CiteFlowAppProps {\n  /** All reference choices */\n  choices: Choice<CslItem>[];\n  /** Filter function for search */\n  filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n  /** Number of visible items */\n  visibleCount: number;\n  /** Default sort option */\n  defaultSort: SortOption;\n  /** Style options for style selection */\n  styleOptions: SelectOption<string>[];\n  /** Whether to show style selection (false if style already specified) */\n  showStyleSelect: boolean;\n  /** Callback when flow completes */\n  onComplete: (result: CiteFlowResult) => void;\n  /** Callback when flow is cancelled */\n  onCancel: () => void;\n}\n\n/**\n * CiteFlowApp component\n *\n * Single Ink app that handles the entire cite flow:\n * 1. Reference selection (SearchableMultiSelect)\n * 2. Style selection (Select) - optional\n * 3. Exit\n */\nexport function CiteFlowApp({\n  choices,\n  filterFn,\n  visibleCount,\n  defaultSort,\n  styleOptions,\n  showStyleSelect,\n  onComplete,\n  onCancel,\n}: CiteFlowAppProps): React.ReactElement {\n  const { exit } = useApp();\n  const [state, setState] = useState<FlowState>(\"search\");\n  const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n  const [pendingResult, setPendingResult] = useState<CiteFlowResult | null>(null);\n\n  // Exit when entering \"exiting\" state\n  useEffect(() => {\n    if (state === \"exiting\" && pendingResult) {\n      exit();\n      if (pendingResult.cancelled) {\n        onCancel();\n      } else {\n        onComplete(pendingResult);\n      }\n    }\n  }, [state, pendingResult, exit, onCancel, onComplete]);\n\n  // Transition to exiting state with result\n  const exitWith = (result: CiteFlowResult) => {\n    setPendingResult(result);\n    setState(\"exiting\");\n  };\n\n  // Handle search submission\n  const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n    if (selected.length === 0) {\n      exitWith({ identifiers: [], cancelled: true });\n      return;\n    }\n    const items = selected.map((c) => c.value);\n    setSelectedItems(items);\n\n    if (showStyleSelect) {\n      setState(\"style\");\n    } else {\n      // No style selection needed, complete immediately\n      exitWith({\n        identifiers: items.map((item) => item.id),\n        cancelled: false,\n      });\n    }\n  };\n\n  // Handle search cancel\n  const handleSearchCancel = () => {\n    exitWith({ identifiers: [], cancelled: true });\n  };\n\n  // Handle style selection\n  const handleStyleSelect = (style: string) => {\n    exitWith({\n      identifiers: selectedItems.map((item) => item.id),\n      style,\n      cancelled: false,\n    });\n  };\n\n  // Handle style cancel (go back to search)\n  const handleStyleCancel = () => {\n    setState(\"search\");\n  };\n\n  // Render based on current state\n  if (state === \"exiting\") {\n    return createElement(Box);\n  }\n\n  if (state === \"search\") {\n    return createElement(SearchableMultiSelect<CslItem>, {\n      choices,\n      filterFn,\n      visibleCount,\n      onSubmit: handleSearchSubmit,\n      onCancel: handleSearchCancel,\n      header: \"Select references to cite\",\n      placeholder: \"Type to search...\",\n      defaultSort,\n    });\n  }\n\n  // state === \"style\"\n  const count = selectedItems.length;\n  const refWord = count === 1 ? \"reference\" : \"references\";\n  return createElement(Select<string>, {\n    options: styleOptions,\n    message: `Select citation style for ${count} ${refWord}:`,\n    onSelect: handleStyleSelect,\n    onCancel: handleStyleCancel,\n  });\n}\n","/**\n * Runner for CiteFlowApp\n *\n * Provides the public API for running the cite flow.\n */\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport type { SearchResult } from \"../../search/types.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport { formatIdentifiers } from \"../choice-builder.js\";\nimport {\n  type Choice,\n  type SelectOption,\n  type SortOption,\n  calculateEffectiveLimit,\n} from \"../components/index.js\";\nimport { formatAuthors } from \"../format.js\";\nimport { CiteFlowApp, type CiteFlowResult } from \"./CiteFlowApp.js\";\n\n/**\n * Configuration for the cite flow\n */\nexport interface CiteFlowConfig {\n  /** Maximum number of results to display */\n  limit: number;\n}\n\n/**\n * Search function type for filtering references\n */\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/**\n * Extract year from CSL item\n */\nfunction extractYear(item: CslItem): number | undefined {\n  const dateParts = item.issued?.[\"date-parts\"];\n  if (!dateParts || dateParts.length === 0) return undefined;\n  const firstDatePart = dateParts[0];\n  if (!firstDatePart || firstDatePart.length === 0) return undefined;\n  return firstDatePart[0];\n}\n\n/**\n * Extract published date from CSL item\n */\nfunction extractPublishedDate(item: CslItem): Date | undefined {\n  const dateParts = item.issued?.[\"date-parts\"];\n  if (!dateParts || dateParts.length === 0) return undefined;\n  const firstDatePart = dateParts[0];\n  if (!firstDatePart || firstDatePart.length === 0) return undefined;\n  const [year, month = 1, day = 1] = firstDatePart;\n  if (year === undefined) return undefined;\n  return new Date(year, month - 1, day);\n}\n\n/**\n * Extract updated date from CSL item (from custom.timestamp)\n */\nfunction extractUpdatedDate(item: CslItem): Date | undefined {\n  const dateStr = item.custom?.timestamp;\n  if (!dateStr || typeof dateStr !== \"string\") return undefined;\n  const date = new Date(dateStr);\n  return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/**\n * Extract created date from CSL item (from custom.created_at)\n */\nfunction extractCreatedDate(item: CslItem): Date | undefined {\n  const dateStr = item.custom?.created_at;\n  if (!dateStr || typeof dateStr !== \"string\") return undefined;\n  const date = new Date(dateStr);\n  return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/**\n * Format item type for display\n */\nfunction formatType(type: string): string {\n  const typeMap: Record<string, string> = {\n    \"article-journal\": \"Journal article\",\n    \"article-magazine\": \"Magazine article\",\n    \"article-newspaper\": \"Newspaper article\",\n    book: \"Book\",\n    chapter: \"Book chapter\",\n    \"paper-conference\": \"Conference paper\",\n    thesis: \"Thesis\",\n    report: \"Report\",\n    webpage: \"Web page\",\n  };\n  return typeMap[type] ?? type;\n}\n\n/**\n * Convert CslItem to Choice for SearchableMultiSelect\n */\nfunction toChoice(item: CslItem): Choice<CslItem> {\n  const authors = formatAuthors(item.author);\n  const year = extractYear(item);\n  const identifiers = formatIdentifiers(item);\n  const itemType = formatType(item.type);\n\n  // Build meta line: Year · Type · Identifiers\n  const metaParts: string[] = [];\n  if (year) metaParts.push(String(year));\n  metaParts.push(itemType);\n  if (identifiers) metaParts.push(identifiers);\n\n  const updatedDate = extractUpdatedDate(item);\n  const createdDate = extractCreatedDate(item);\n  const publishedDate = extractPublishedDate(item);\n\n  return {\n    id: item.id,\n    title: item.title ?? \"(No title)\",\n    subtitle: authors || \"(No authors)\",\n    meta: metaParts.join(\" · \"),\n    value: item,\n    ...(updatedDate && { updatedDate }),\n    ...(createdDate && { createdDate }),\n    ...(publishedDate && { publishedDate }),\n  };\n}\n\n/**\n * Options for running the cite flow\n */\nexport interface RunCiteFlowOptions {\n  /** All references available for selection */\n  allReferences: CslItem[];\n  /** Search function for filtering */\n  searchFn: SearchFunction;\n  /** Flow configuration */\n  config: CiteFlowConfig;\n  /** Style options for style selection */\n  styleOptions: SelectOption<string>[];\n  /** Whether to show style selection */\n  showStyleSelect: boolean;\n}\n\n/**\n * Run the cite flow (reference selection → style selection if needed)\n *\n * This is the main entry point for interactive cite command.\n */\nexport async function runCiteFlow(options: RunCiteFlowOptions): Promise<CiteFlowResult> {\n  const { allReferences, searchFn, config, styleOptions, showStyleSelect } = options;\n\n  // Convert references to choices\n  const choices = allReferences.map(toChoice);\n\n  // Calculate effective visible count\n  const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n  // Create filter function using the provided search function\n  const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n    if (!query.trim()) return choices;\n\n    const results = searchFn(query);\n    return results.map((r) => toChoice(r.reference));\n  };\n\n  // Default sort option\n  const defaultSort: SortOption = \"updated-desc\";\n\n  // Create a promise to capture the result\n  return new Promise<CiteFlowResult>((resolve) => {\n    let flowResult: CiteFlowResult = {\n      identifiers: [],\n      cancelled: true,\n    };\n\n    const handleComplete = (result: CiteFlowResult): void => {\n      flowResult = result;\n    };\n\n    const handleCancel = (): void => {\n      flowResult = {\n        identifiers: [],\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app (single render for entire flow)\n    const { waitUntilExit } = render(\n      createElement(CiteFlowApp, {\n        choices,\n        filterFn,\n        visibleCount: effectiveLimit,\n        defaultSort,\n        styleOptions,\n        showStyleSelect,\n        onComplete: handleComplete,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, then resolve\n    waitUntilExit()\n      .then(() => {\n        restoreStdinAfterInk();\n        resolve(flowResult);\n      })\n      .catch(() => {\n        restoreStdinAfterInk();\n        resolve({\n          identifiers: [],\n          cancelled: true,\n        });\n      });\n  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debounceMs: number;\n  /** Default citation key format */\n  defaultKeyFormat?: CitationKeyFormat;\n  /** Default citation style */\n  defaultStyle?: string;\n}\n\n/**\n * Search function type for filtering references\n */\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/**\n * Run the search flow (search → action → style if needed)\n *\n * This is the main entry point for the `search -t` command.\n */\nexport async function runSearchFlow(\n  allReferences: CslItem[],\n  searchFn: SearchFunction,\n  config: SearchFlowConfig\n): Promise<ActionMenuResult> {\n  // Convert references to choices and build lookup map\n  const choices = allReferences.map(toChoice);\n  const choiceMap = new Map(choices.map((c) => [c.id, c]));\n\n  // Calculate effective visible count\n  const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n  // Create filter function using the provided search function\n  const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n    if (!query.trim()) return choices;\n\n    const results = searchFn(query);\n    return results.flatMap((r) => {\n      const choice = choiceMap.get(r.reference.id);\n      return choice ? 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Reference selection (SearchableMultiSelect)\n * 2. Style selection (Select) - optional\n * 3. Exit\n */\nexport function CiteFlowApp({\n  choices,\n  filterFn,\n  visibleCount,\n  defaultSort,\n  styleOptions,\n  showStyleSelect,\n  onComplete,\n  onCancel,\n}: CiteFlowAppProps): React.ReactElement {\n  const { exit } = useApp();\n  const [state, setState] = useState<FlowState>(\"search\");\n  const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n  const [pendingResult, setPendingResult] = useState<CiteFlowResult | null>(null);\n\n  // Exit when entering \"exiting\" state\n  useEffect(() => {\n    if (state === \"exiting\" && pendingResult) {\n      exit();\n      if (pendingResult.cancelled) {\n        onCancel();\n      } else {\n        onComplete(pendingResult);\n      }\n    }\n  }, [state, pendingResult, exit, onCancel, onComplete]);\n\n  // Transition to exiting state with result\n  const exitWith = (result: CiteFlowResult) => {\n    setPendingResult(result);\n    setState(\"exiting\");\n  };\n\n  // Handle search submission\n  const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n    if (selected.length === 0) {\n      exitWith({ identifiers: [], cancelled: true });\n      return;\n    }\n    const items = selected.map((c) => c.value);\n    setSelectedItems(items);\n\n    if (showStyleSelect) {\n      setState(\"style\");\n    } else {\n      // No style selection needed, complete immediately\n      exitWith({\n        identifiers: items.map((item) => item.id),\n        cancelled: false,\n      });\n    }\n  };\n\n  // Handle search cancel\n  const handleSearchCancel = () => {\n    exitWith({ identifiers: [], cancelled: true });\n  };\n\n  // Handle style selection\n  const handleStyleSelect = (style: string) => {\n    exitWith({\n      identifiers: selectedItems.map((item) => item.id),\n      style,\n      cancelled: false,\n    });\n  };\n\n  // Handle style cancel (go back to search)\n  const handleStyleCancel = () => {\n    setState(\"search\");\n  };\n\n  // Render based on current state\n  if (state === \"exiting\") {\n 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\"../../search/types.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport { formatIdentifiers } from \"../choice-builder.js\";\nimport {\n  type Choice,\n  type SelectOption,\n  type SortOption,\n  calculateEffectiveLimit,\n} from \"../components/index.js\";\nimport { formatAuthors } from \"../format.js\";\nimport { CiteFlowApp, type CiteFlowResult } from \"./CiteFlowApp.js\";\n\n/**\n * Configuration for the cite flow\n */\nexport interface CiteFlowConfig {\n  /** Maximum number of results to display */\n  limit: number;\n}\n\n/**\n * Search function type for filtering references\n */\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/**\n * Extract year from CSL item\n */\nfunction extractYear(item: CslItem): number | undefined {\n  const dateParts = item.issued?.[\"date-parts\"];\n  if (!dateParts || dateParts.length === 0) return undefined;\n  const firstDatePart = dateParts[0];\n  if (!firstDatePart || firstDatePart.length === 0) return undefined;\n  return firstDatePart[0];\n}\n\n/**\n * Extract published date from CSL item\n */\nfunction extractPublishedDate(item: CslItem): Date | undefined {\n  const dateParts = item.issued?.[\"date-parts\"];\n  if (!dateParts || dateParts.length === 0) return undefined;\n  const firstDatePart = dateParts[0];\n  if (!firstDatePart || firstDatePart.length === 0) return undefined;\n  const [year, month = 1, day = 1] = firstDatePart;\n  if (year === undefined) return undefined;\n  return new Date(year, month - 1, day);\n}\n\n/**\n * Extract updated date from CSL item (from custom.timestamp)\n */\nfunction extractUpdatedDate(item: CslItem): Date | undefined {\n  const dateStr = item.custom?.timestamp;\n  if (!dateStr || typeof dateStr !== \"string\") return undefined;\n  const date = new Date(dateStr);\n  return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/**\n * Extract created date from CSL item (from custom.created_at)\n */\nfunction extractCreatedDate(item: CslItem): Date | undefined {\n  const dateStr = item.custom?.created_at;\n  if (!dateStr || typeof dateStr !== \"string\") return undefined;\n  const date = new Date(dateStr);\n  return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/**\n * Format item type for display\n */\nfunction formatType(type: string): string {\n  const typeMap: Record<string, string> = {\n    \"article-journal\": \"Journal article\",\n    \"article-magazine\": \"Magazine article\",\n    \"article-newspaper\": \"Newspaper article\",\n    book: \"Book\",\n    chapter: \"Book chapter\",\n    \"paper-conference\": \"Conference paper\",\n    thesis: \"Thesis\",\n    report: \"Report\",\n    webpage: \"Web page\",\n  };\n  return typeMap[type] ?? type;\n}\n\n/**\n * Convert CslItem to Choice for SearchableMultiSelect\n */\nfunction toChoice(item: CslItem): Choice<CslItem> {\n  const authors = formatAuthors(item.author);\n  const year = extractYear(item);\n  const identifiers = formatIdentifiers(item);\n  const itemType = formatType(item.type);\n\n  // Build meta line: Year · Type · Identifiers\n  const metaParts: string[] = [];\n  if (year) metaParts.push(String(year));\n  metaParts.push(itemType);\n  if (identifiers) metaParts.push(identifiers);\n\n  const updatedDate = extractUpdatedDate(item);\n  const createdDate = extractCreatedDate(item);\n  const publishedDate = extractPublishedDate(item);\n\n  return {\n    id: item.id,\n    title: item.title ?? \"(No title)\",\n    subtitle: authors || \"(No authors)\",\n    meta: metaParts.join(\" · \"),\n    value: item,\n    ...(updatedDate && { updatedDate }),\n    ...(createdDate && { createdDate }),\n    ...(publishedDate && { publishedDate }),\n  };\n}\n\n/**\n * Options for running the cite flow\n */\nexport interface RunCiteFlowOptions {\n  /** All references available for selection */\n  allReferences: CslItem[];\n  /** Search function for filtering */\n  searchFn: SearchFunction;\n  /** Flow configuration */\n  config: CiteFlowConfig;\n  /** Style options for style selection */\n  styleOptions: SelectOption<string>[];\n  /** Whether to show style selection */\n  showStyleSelect: boolean;\n}\n\n/**\n * Run the cite flow (reference selection → style selection if needed)\n *\n * This is the main entry point for interactive cite command.\n */\nexport async function runCiteFlow(options: RunCiteFlowOptions): Promise<CiteFlowResult> {\n  const { allReferences, searchFn, config, styleOptions, showStyleSelect } = options;\n\n  // Convert references to choices\n  const choices = allReferences.map(toChoice);\n\n  // Calculate effective visible count\n  const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n  // Create filter function using the provided search function\n  const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n    if (!query.trim()) return choices;\n\n    const results = searchFn(query);\n    return results.map((r) => toChoice(r.reference));\n  };\n\n  // Default sort option\n  const defaultSort: SortOption = \"updated-desc\";\n\n  // Create a promise to capture the result\n  return new Promise<CiteFlowResult>((resolve) => {\n    let flowResult: CiteFlowResult = {\n      identifiers: [],\n      cancelled: true,\n    };\n\n    const handleComplete = (result: CiteFlowResult): void => {\n      flowResult = result;\n    };\n\n    const handleCancel = (): void => {\n      flowResult = {\n        identifiers: [],\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app (single render for entire flow)\n    const { waitUntilExit } = render(\n      createElement(CiteFlowApp, {\n        choices,\n        filterFn,\n        visibleCount: effectiveLimit,\n        defaultSort,\n        styleOptions,\n        showStyleSelect,\n        onComplete: handleComplete,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, then resolve\n    waitUntilExit()\n      .then(() => {\n        restoreStdinAfterInk();\n        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package/dist/chunks/metadata-comparator-C5zfoYdK.js

@@ -0,0 +1,137 @@
+import { n as normalize } from "./file-watcher-Dlx0PolG.js";
+function titleToWordSet(title) {
+  const normalized = normalize(title);
+  if (normalized === "") return /* @__PURE__ */ new Set();
+  return new Set(normalized.split(" "));
+}
+function isTitleSimilar(local, remote) {
+  if (!local || !remote) return true;
+  const localWords = titleToWordSet(local);
+  const remoteWords = titleToWordSet(remote);
+  if (localWords.size === 0 || remoteWords.size === 0) return true;
+  let intersectionSize = 0;
+  for (const word of localWords) {
+    if (remoteWords.has(word)) intersectionSize++;
+  }
+  const unionSize = localWords.size + remoteWords.size - intersectionSize;
+  const jaccard = unionSize > 0 ? intersectionSize / unionSize : 0;
+  const minSize = Math.min(localWords.size, remoteWords.size);
+  const containment = minSize > 0 ? intersectionSize / minSize : 0;
+  return jaccard >= 0.5 || containment >= 0.8;
+}
+function extractFamilyNames(authors) {
+  const families = /* @__PURE__ */ new Set();
+  for (const author of authors) {
+    if (author.family) {
+      families.add(normalize(author.family));
+    }
+  }
+  return families;
+}
+function isAuthorSimilar(local, remote) {
+  if (!local || !remote || local.length === 0 || remote.length === 0) return true;
+  const localFamilies = extractFamilyNames(local);
+  const remoteFamilies = extractFamilyNames(remote);
+  if (localFamilies.size === 0 || remoteFamilies.size === 0) return true;
+  let overlapCount = 0;
+  for (const family of localFamilies) {
+    if (remoteFamilies.has(family)) overlapCount++;
+  }
+  const overlap = overlapCount / localFamilies.size;
+  return overlap >= 0.5;
+}
+const CROSSREF_TO_CSL_TYPE = {
+  "journal-article": "article-journal",
+  "book-chapter": "chapter",
+  "proceedings-article": "paper-conference",
+  "posted-content": "article",
+  monograph: "book",
+  "edited-book": "book",
+  "reference-book": "book",
+  report: "report",
+  dataset: "dataset",
+  dissertation: "thesis",
+  "peer-review": "review",
+  "book-part": "chapter",
+  "reference-entry": "entry",
+  component: "article"
+};
+function normalizeType(type, isCrossref) {
+  if (!type) return null;
+  if (isCrossref) return CROSSREF_TO_CSL_TYPE[type] ?? type;
+  return type;
+}
+function formatAuthors(authors) {
+  if (!authors || authors.length === 0) return null;
+  return authors.map((a) => [a.family, a.given].filter(Boolean).join(", ")).join("; ");
+}
+function formatDateParts(issued) {
+  const parts = issued?.["date-parts"]?.[0];
+  if (!parts || parts.length === 0) return null;
+  return parts.join("-");
+}
+function addDiffIfChanged(diffs, fields, name, local, remote) {
+  if (local === remote) return;
+  if (local === null && remote === null) return;
+  fields.push(name);
+  diffs.push({ field: name, local, remote });
+}
+function collectFieldDiffs(local, remote) {
+  const changedFields = [];
+  const fieldDiffs = [];
+  addDiffIfChanged(fieldDiffs, changedFields, "title", local.title ?? null, remote.title ?? null);
+  addDiffIfChanged(
+    fieldDiffs,
+    changedFields,
+    "author",
+    formatAuthors(local.author),
+    formatAuthors(remote.author)
+  );
+  addDiffIfChanged(
+    fieldDiffs,
+    changedFields,
+    "container-title",
+    local["container-title"] ?? null,
+    remote.containerTitle ?? null
+  );
+  addDiffIfChanged(
+    fieldDiffs,
+    changedFields,
+    "type",
+    normalizeType(local.type, false),
+    normalizeType(remote.type, true)
+  );
+  addDiffIfChanged(fieldDiffs, changedFields, "page", local.page ?? null, remote.page ?? null);
+  addDiffIfChanged(
+    fieldDiffs,
+    changedFields,
+    "volume",
+    local.volume ?? null,
+    remote.volume ?? null
+  );
+  addDiffIfChanged(fieldDiffs, changedFields, "issue", local.issue ?? null, remote.issue ?? null);
+  addDiffIfChanged(
+    fieldDiffs,
+    changedFields,
+    "issued",
+    formatDateParts(local.issued),
+    formatDateParts(remote.issued)
+  );
+  return { changedFields, fieldDiffs };
+}
+function compareMetadata(local, remote) {
+  const { changedFields, fieldDiffs } = collectFieldDiffs(local, remote);
+  if (changedFields.length === 0) {
+    return { classification: "no_change", changedFields, fieldDiffs };
+  }
+  const titleSimilar = isTitleSimilar(local.title, remote.title);
+  const authorSimilar = isAuthorSimilar(local.author, remote.author);
+  if (!titleSimilar || !authorSimilar) {
+    return { classification: "metadata_mismatch", changedFields, fieldDiffs };
+  }
+  return { classification: "metadata_outdated", changedFields, fieldDiffs };
+}
+export {
+  compareMetadata
+};
+//# sourceMappingURL=metadata-comparator-C5zfoYdK.js.map

package/dist/chunks/metadata-comparator-C5zfoYdK.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"metadata-comparator-C5zfoYdK.js","sources":["../../src/features/check/metadata-similarity.ts","../../src/features/check/metadata-comparator.ts"],"sourcesContent":["/**\n * Metadata similarity functions for comparing local vs remote reference metadata.\n */\n\nimport { normalize } from \"../search/normalizer.js\";\n\ntype AuthorName = { family?: string; given?: string };\n\n/**\n * Tokenize a title into a set of normalized words.\n */\nfunction titleToWordSet(title: string): Set<string> {\n  const normalized = normalize(title);\n  if (normalized === \"\") return new Set();\n  return new Set(normalized.split(\" \"));\n}\n\n/**\n * Check if two titles are similar using Jaccard similarity and Containment coefficient.\n * Returns true (similar) if Jaccard >= 0.5 OR Containment >= 0.8.\n * Returns true if either title is empty/undefined (not enough data to compare).\n */\nexport function isTitleSimilar(local: string | undefined, remote: string | undefined): boolean {\n  if (!local || !remote) return true;\n\n  const localWords = titleToWordSet(local);\n  const remoteWords = titleToWordSet(remote);\n\n  if (localWords.size === 0 || remoteWords.size === 0) return true;\n\n  // Intersection\n  let intersectionSize = 0;\n  for (const word of localWords) {\n    if (remoteWords.has(word)) intersectionSize++;\n  }\n\n  // Jaccard = |A∩B| / |A∪B|\n  const unionSize = localWords.size + remoteWords.size - intersectionSize;\n  const jaccard = unionSize > 0 ? intersectionSize / unionSize : 0;\n\n  // Containment = |A∩B| / min(|A|, |B|)\n  const minSize = Math.min(localWords.size, remoteWords.size);\n  const containment = minSize > 0 ? intersectionSize / minSize : 0;\n\n  return jaccard >= 0.5 || containment >= 0.8;\n}\n\n/**\n * Extract and normalize family names from an author array.\n */\nfunction extractFamilyNames(authors: AuthorName[]): Set<string> {\n  const families = new Set<string>();\n  for (const author of authors) {\n    if (author.family) {\n      families.add(normalize(author.family));\n    }\n  }\n  return families;\n}\n\n/**\n * Check if author lists are similar using family name overlap ratio.\n * Overlap = |local_families ∩ remote_families| / |local_families|\n * Returns true (similar) if overlap >= 0.5.\n * Returns true if either side has no authors (not enough data).\n */\nexport function isAuthorSimilar(\n  local: AuthorName[] | undefined,\n  remote: AuthorName[] | undefined\n): boolean {\n  if (!local || !remote || local.length === 0 || remote.length === 0) return true;\n\n  const localFamilies = extractFamilyNames(local);\n  const remoteFamilies = extractFamilyNames(remote);\n\n  if (localFamilies.size === 0 || remoteFamilies.size === 0) return true;\n\n  let overlapCount = 0;\n  for (const family of localFamilies) {\n    if (remoteFamilies.has(family)) overlapCount++;\n  }\n\n  // Asymmetric by design: measures how many local authors appear in remote.\n  // This correctly handles co-authors being added to the remote record (local is\n  // a subset of remote → overlap = 1.0). The trade-off is that if remote has many\n  // extra unrelated authors plus one coincidental match, overlap could be high.\n  // In practice, this is rare for academic metadata.\n  const overlap = overlapCount / localFamilies.size;\n  return overlap >= 0.5;\n}\n","/**\n * Metadata comparator for classifying differences between local and remote metadata.\n */\n\nimport type { RemoteMetadata } from \"./crossref-client.js\";\nimport { isAuthorSimilar, isTitleSimilar } from \"./metadata-similarity.js\";\n\nexport interface MetadataComparisonResult {\n  classification: \"metadata_mismatch\" | \"metadata_outdated\" | \"no_change\";\n  changedFields: string[];\n  fieldDiffs: Array<{\n    field: string;\n    local: string | null;\n    remote: string | null;\n  }>;\n}\n\n/**\n * Local item fields relevant for metadata comparison.\n */\nexport interface LocalMetadataFields {\n  title?: string;\n  author?: Array<{ family?: string; given?: string }>;\n  \"container-title\"?: string;\n  type?: string;\n  page?: string;\n  volume?: string;\n  issue?: string;\n  issued?: { \"date-parts\"?: number[][] };\n}\n\n/**\n * Map Crossref type to CSL type for comparison.\n */\nconst CROSSREF_TO_CSL_TYPE: Record<string, string> = {\n  \"journal-article\": \"article-journal\",\n  \"book-chapter\": \"chapter\",\n  \"proceedings-article\": \"paper-conference\",\n  \"posted-content\": \"article\",\n  monograph: \"book\",\n  \"edited-book\": \"book\",\n  \"reference-book\": \"book\",\n  report: \"report\",\n  dataset: \"dataset\",\n  dissertation: \"thesis\",\n  \"peer-review\": \"review\",\n  \"book-part\": \"chapter\",\n  \"reference-entry\": \"entry\",\n  component: \"article\",\n};\n\nfunction normalizeType(type: string | undefined, isCrossref: boolean): string | null {\n  if (!type) return null;\n  if (isCrossref) return CROSSREF_TO_CSL_TYPE[type] ?? type;\n  return type;\n}\n\nfunction formatAuthors(\n  authors: Array<{ family?: string; given?: string }> | undefined\n): string | null {\n  if (!authors || authors.length === 0) return null;\n  return authors.map((a) => [a.family, a.given].filter(Boolean).join(\", \")).join(\"; \");\n}\n\nfunction formatDateParts(issued: { \"date-parts\"?: number[][] } | undefined): string | null {\n  const parts = issued?.[\"date-parts\"]?.[0];\n  if (!parts || parts.length === 0) return null;\n  return parts.join(\"-\");\n}\n\ntype FieldDiff = MetadataComparisonResult[\"fieldDiffs\"][number];\n\nfunction addDiffIfChanged(\n  diffs: FieldDiff[],\n  fields: string[],\n  name: string,\n  local: string | null,\n  remote: string | null\n): void {\n  if (local === remote) return;\n  if (local === null && remote === null) return;\n  fields.push(name);\n  diffs.push({ field: name, local, remote });\n}\n\nfunction collectFieldDiffs(\n  local: LocalMetadataFields,\n  remote: RemoteMetadata\n): { changedFields: string[]; fieldDiffs: FieldDiff[] } {\n  const changedFields: string[] = [];\n  const fieldDiffs: FieldDiff[] = [];\n\n  // Title\n  addDiffIfChanged(fieldDiffs, changedFields, \"title\", local.title ?? null, remote.title ?? null);\n\n  // Author\n  addDiffIfChanged(\n    fieldDiffs,\n    changedFields,\n    \"author\",\n    formatAuthors(local.author),\n    formatAuthors(remote.author)\n  );\n\n  // Container title\n  // NOTE: Compared as raw strings. Abbreviation differences (e.g., \"J. Am. Chem. Soc.\"\n  // vs \"Journal of the American Chemical Society\") will show as diffs. This is acceptable\n  // because such differences are classified as \"outdated\" (not \"mismatch\"), and updating\n  // to the canonical remote form is generally desirable.\n  addDiffIfChanged(\n    fieldDiffs,\n    changedFields,\n    \"container-title\",\n    local[\"container-title\"] ?? null,\n    remote.containerTitle ?? null\n  );\n\n  // Type (with mapping)\n  addDiffIfChanged(\n    fieldDiffs,\n    changedFields,\n    \"type\",\n    normalizeType(local.type, false),\n    normalizeType(remote.type, true)\n  );\n\n  // Publication fields\n  addDiffIfChanged(fieldDiffs, changedFields, \"page\", local.page ?? null, remote.page ?? null);\n  addDiffIfChanged(\n    fieldDiffs,\n    changedFields,\n    \"volume\",\n    local.volume ?? null,\n    remote.volume ?? null\n  );\n  addDiffIfChanged(fieldDiffs, changedFields, \"issue\", local.issue ?? null, remote.issue ?? null);\n  addDiffIfChanged(\n    fieldDiffs,\n    changedFields,\n    \"issued\",\n    formatDateParts(local.issued),\n    formatDateParts(remote.issued)\n  );\n\n  return { changedFields, fieldDiffs };\n}\n\n/**\n * Compare local metadata fields against remote (Crossref) metadata.\n * Classifies differences as metadata_mismatch, metadata_outdated, or no_change.\n */\nexport function compareMetadata(\n  local: LocalMetadataFields,\n  remote: RemoteMetadata\n): MetadataComparisonResult {\n  const { changedFields, fieldDiffs } = collectFieldDiffs(local, remote);\n\n  if (changedFields.length === 0) {\n    return { classification: \"no_change\", changedFields, fieldDiffs };\n  }\n\n  const titleSimilar = isTitleSimilar(local.title, remote.title);\n  const authorSimilar = isAuthorSimilar(local.author, remote.author);\n\n  if (!titleSimilar || !authorSimilar) {\n    return { classification: \"metadata_mismatch\", changedFields, fieldDiffs };\n  }\n\n  return { classification: \"metadata_outdated\", changedFields, fieldDiffs };\n}\n"],"names":[],"mappings":";AAWA,SAAS,eAAe,OAA4B;AAClD,QAAM,aAAa,UAAU,KAAK;AAClC,MAAI,eAAe,GAAI,QAAO,oBAAI,IAAA;AAClC,SAAO,IAAI,IAAI,WAAW,MAAM,GAAG,CAAC;AACtC;AAOO,SAAS,eAAe,OAA2B,QAAqC;AAC7F,MAAI,CAAC,SAAS,CAAC,OAAQ,QAAO;AAE9B,QAAM,aAAa,eAAe,KAAK;AACvC,QAAM,cAAc,eAAe,MAAM;AAEzC,MAAI,WAAW,SAAS,KAAK,YAAY,SAAS,EAAG,QAAO;AAG5D,MAAI,mBAAmB;AACvB,aAAW,QAAQ,YAAY;AAC7B,QAAI,YAAY,IAAI,IAAI,EAAG;AAAA,EAC7B;AAGA,QAAM,YAAY,WAAW,OAAO,YAAY,OAAO;AACvD,QAAM,UAAU,YAAY,IAAI,mBAAmB,YAAY;AAG/D,QAAM,UAAU,KAAK,IAAI,WAAW,MAAM,YAAY,IAAI;AAC1D,QAAM,cAAc,UAAU,IAAI,mBAAmB,UAAU;AAE/D,SAAO,WAAW,OAAO,eAAe;AAC1C;AAKA,SAAS,mBAAmB,SAAoC;AAC9D,QAAM,+BAAe,IAAA;AACrB,aAAW,UAAU,SAAS;AAC5B,QAAI,OAAO,QAAQ;AACjB,eAAS,IAAI,UAAU,OAAO,MAAM,CAAC;AAAA,IACvC;AAAA,EACF;AACA,SAAO;AACT;AAQO,SAAS,gBACd,OACA,QACS;AACT,MAAI,CAAC,SAAS,CAAC,UAAU,MAAM,WAAW,KAAK,OAAO,WAAW,EAAG,QAAO;AAE3E,QAAM,gBAAgB,mBAAmB,KAAK;AAC9C,QAAM,iBAAiB,mBAAmB,MAAM;AAEhD,MAAI,cAAc,SAAS,KAAK,eAAe,SAAS,EAAG,QAAO;AAElE,MAAI,eAAe;AACnB,aAAW,UAAU,eAAe;AAClC,QAAI,eAAe,IAAI,MAAM,EAAG;AAAA,EAClC;AAOA,QAAM,UAAU,eAAe,cAAc;AAC7C,SAAO,WAAW;AACpB;ACvDA,MAAM,uBAA+C;AAAA,EACnD,mBAAmB;AAAA,EACnB,gBAAgB;AAAA,EAChB,uBAAuB;AAAA,EACvB,kBAAkB;AAAA,EAClB,WAAW;AAAA,EACX,eAAe;AAAA,EACf,kBAAkB;AAAA,EAClB,QAAQ;AAAA,EACR,SAAS;AAAA,EACT,cAAc;AAAA,EACd,eAAe;AAAA,EACf,aAAa;AAAA,EACb,mBAAmB;AAAA,EACnB,WAAW;AACb;AAEA,SAAS,cAAc,MAA0B,YAAoC;AACnF,MAAI,CAAC,KAAM,QAAO;AAClB,MAAI,WAAY,QAAO,qBAAqB,IAAI,KAAK;AACrD,SAAO;AACT;AAEA,SAAS,cACP,SACe;AACf,MAAI,CAAC,WAAW,QAAQ,WAAW,EAAG,QAAO;AAC7C,SAAO,QAAQ,IAAI,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,KAAK,EAAE,OAAO,OAAO,EAAE,KAAK,IAAI,CAAC,EAAE,KAAK,IAAI;AACrF;AAEA,SAAS,gBAAgB,QAAkE;AACzF,QAAM,QAAQ,SAAS,YAAY,IAAI,CAAC;AACxC,MAAI,CAAC,SAAS,MAAM,WAAW,EAAG,QAAO;AACzC,SAAO,MAAM,KAAK,GAAG;AACvB;AAIA,SAAS,iBACP,OACA,QACA,MACA,OACA,QACM;AACN,MAAI,UAAU,OAAQ;AACtB,MAAI,UAAU,QAAQ,WAAW,KAAM;AACvC,SAAO,KAAK,IAAI;AAChB,QAAM,KAAK,EAAE,OAAO,MAAM,OAAO,QAAQ;AAC3C;AAEA,SAAS,kBACP,OACA,QACsD;AACtD,QAAM,gBAA0B,CAAA;AAChC,QAAM,aAA0B,CAAA;AAGhC,mBAAiB,YAAY,eAAe,SAAS,MAAM,SAAS,MAAM,OAAO,SAAS,IAAI;AAG9F;AAAA,IACE;AAAA,IACA;AAAA,IACA;AAAA,IACA,cAAc,MAAM,MAAM;AAAA,IAC1B,cAAc,OAAO,MAAM;AAAA,EAAA;AAQ7B;AAAA,IACE;AAAA,IACA;AAAA,IACA;AAAA,IACA,MAAM,iBAAiB,KAAK;AAAA,IAC5B,OAAO,kBAAkB;AAAA,EAAA;AAI3B;AAAA,IACE;AAAA,IACA;AAAA,IACA;AAAA,IACA,cAAc,MAAM,MAAM,KAAK;AAAA,IAC/B,cAAc,OAAO,MAAM,IAAI;AAAA,EAAA;AAIjC,mBAAiB,YAAY,eAAe,QAAQ,MAAM,QAAQ,MAAM,OAAO,QAAQ,IAAI;AAC3F;AAAA,IACE;AAAA,IACA;AAAA,IACA;AAAA,IACA,MAAM,UAAU;AAAA,IAChB,OAAO,UAAU;AAAA,EAAA;AAEnB,mBAAiB,YAAY,eAAe,SAAS,MAAM,SAAS,MAAM,OAAO,SAAS,IAAI;AAC9F;AAAA,IACE;AAAA,IACA;AAAA,IACA;AAAA,IACA,gBAAgB,MAAM,MAAM;AAAA,IAC5B,gBAAgB,OAAO,MAAM;AAAA,EAAA;AAG/B,SAAO,EAAE,eAAe,WAAA;AAC1B;AAMO,SAAS,gBACd,OACA,QAC0B;AAC1B,QAAM,EAAE,eAAe,WAAA,IAAe,kBAAkB,OAAO,MAAM;AAErE,MAAI,cAAc,WAAW,GAAG;AAC9B,WAAO,EAAE,gBAAgB,aAAa,eAAe,WAAA;AAAA,EACvD;AAEA,QAAM,eAAe,eAAe,MAAM,OAAO,OAAO,KAAK;AAC7D,QAAM,gBAAgB,gBAAgB,MAAM,QAAQ,OAAO,MAAM;AAEjE,MAAI,CAAC,gBAAgB,CAAC,eAAe;AACnC,WAAO,EAAE,gBAAgB,qBAAqB,eAAe,WAAA;AAAA,EAC/D;AAEA,SAAO,EAAE,gBAAgB,qBAAqB,eAAe,WAAA;AAC/D;"}

package/dist/chunks/{pubmed-client-J18fg3fG.js → pubmed-client-CGReJIOz.js}

@@ -1,4 +1,4 @@
-import { g as getRateLimiter } from "./index-D2HsxXnK.js";
+import { g as getRateLimiter } from "./index-of6eJn8N.js";
 const PUBMED_ESUMMARY_BASE = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi";
 function buildEsummaryUrl(pmid, config) {
   const url = new URL(PUBMED_ESUMMARY_BASE);
@@ -48,4 +48,4 @@ async function queryPubmed(pmid, config) {
 export {
   queryPubmed
 };
-//# sourceMappingURL=pubmed-client-J18fg3fG.js.map
+//# sourceMappingURL=pubmed-client-CGReJIOz.js.map

package/dist/chunks/{pubmed-client-J18fg3fG.js.map → pubmed-client-CGReJIOz.js.map}

@@ -1 +1 @@
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package/dist/chunks/{reference-select-Qpgt9cbN.js → reference-select-i1Cnmc16.js}

@@ -1,8 +1,8 @@
 import { t as tokenize, s as search } from "./file-watcher-Dlx0PolG.js";
 import { render, useApp } from "ink";
 import { createElement } from "react";
-import { r as restoreStdinAfterInk } from "./index-QTYx5RaF.js";
-import { t as toChoice, c as calculateEffectiveLimit, S as SearchableMultiSelect } from "./SearchableMultiSelect-B7qEWPDT.js";
+import { r as restoreStdinAfterInk } from "./index-BEQ4YIXx.js";
+import { t as toChoice, c as calculateEffectiveLimit, S as SearchableMultiSelect } from "./SearchableMultiSelect-D2IzthN4.js";
 import { checkTTY } from "./tty-BMyaEOhX.js";
 function SearchPromptApp({
   choices,
@@ -126,4 +126,4 @@ export {
   selectReferenceItemsOrExit,
   selectReferencesOrExit
 };
-//# sourceMappingURL=reference-select-Qpgt9cbN.js.map
+//# sourceMappingURL=reference-select-i1Cnmc16.js.map

package/dist/chunks/{reference-select-Qpgt9cbN.js.map → reference-select-i1Cnmc16.js.map}

@@ -1 +1 @@
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+{"version":3,"file":"reference-select-i1Cnmc16.js","sources":["../../src/features/interactive/search-prompt.ts","../../src/features/interactive/reference-select.ts"],"sourcesContent":["/**\n * Interactive search prompt using React Ink\n *\n * Provides real-time incremental search with multiple selection support.\n */\n\nimport { render, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement } from \"react\";\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport type { SearchResult } from \"../search/types.js\";\nimport { restoreStdinAfterInk } from \"./alternate-screen.js\";\nimport { toChoice } from \"./choice-builder.js\";\nimport {\n  type Choice,\n  SearchableMultiSelect,\n  type SortOption,\n  calculateEffectiveLimit,\n  getTerminalHeight,\n  getTerminalWidth,\n} from \"./components/index.js\";\n\n/**\n * Configuration for the search prompt\n */\nexport interface SearchPromptConfig {\n  /** Maximum number of results to display */\n  limit: number;\n  /** Debounce delay in milliseconds (not used in Ink version, kept for API compatibility) */\n  debounceMs: number;\n}\n\n/**\n * Search function type for filtering references\n */\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/**\n * Result from the search prompt\n */\nexport interface SearchPromptResult {\n  /** Selected references */\n  selected: CslItem[];\n  /** Whether the prompt was cancelled */\n  cancelled: boolean;\n}\n\nexport { calculateEffectiveLimit, getTerminalHeight, getTerminalWidth };\n\n/**\n * Props for the SearchPromptApp component\n */\ninterface SearchPromptAppProps {\n  choices: Choice<CslItem>[];\n  filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n  visibleCount: number;\n  defaultSort: SortOption;\n  onSubmit: (selected: Choice<CslItem>[]) => void;\n  onCancel: () => void;\n}\n\n/**\n * SearchPromptApp component - wraps SearchableMultiSelect for search prompt\n */\nfunction SearchPromptApp({\n  choices,\n  filterFn,\n  visibleCount,\n  defaultSort,\n  onSubmit,\n  onCancel,\n}: SearchPromptAppProps): React.ReactElement {\n  const { exit } = useApp();\n\n  const handleSubmit = (selected: Choice<CslItem>[]): void => {\n    onSubmit(selected);\n    exit();\n  };\n\n  const handleCancel = (): void => {\n    onCancel();\n    exit();\n  };\n\n  return createElement(SearchableMultiSelect<CslItem>, {\n    choices,\n    filterFn,\n    visibleCount,\n    onSubmit: handleSubmit,\n    onCancel: handleCancel,\n    header: \"Search references\",\n    placeholder: \"Type to search...\",\n    defaultSort,\n  });\n}\n\n/**\n * Creates and runs an interactive search prompt\n */\nexport async function runSearchPrompt(\n  allReferences: CslItem[],\n  searchFn: SearchFunction,\n  config: SearchPromptConfig,\n  _initialQuery = \"\" // kept for API compatibility, not used in Ink version\n): Promise<SearchPromptResult> {\n  // Convert references to choices\n  const choices = allReferences.map(toChoice);\n\n  // Calculate effective visible count\n  const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n  // Create filter function using the provided search function\n  const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n    if (!query.trim()) return choices;\n\n    const results = searchFn(query);\n    return results.map((r) => toChoice(r.reference));\n  };\n\n  // Create a promise to capture the result\n  return new Promise<SearchPromptResult>((resolve) => {\n    let result: SearchPromptResult = { selected: [], cancelled: true };\n\n    const handleSubmit = (selected: Choice<CslItem>[]): void => {\n      result = {\n        selected: selected.map((c) => c.value),\n        cancelled: false,\n      };\n    };\n\n    const handleCancel = (): void => {\n      result = {\n        selected: [],\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app\n    const { waitUntilExit, clear } = render(\n      createElement(SearchPromptApp, {\n        choices,\n        filterFn,\n        visibleCount: effectiveLimit,\n        defaultSort: \"updated-desc\",\n        onSubmit: handleSubmit,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, clear the screen, then resolve\n    waitUntilExit()\n      .then(() => {\n        clear();\n        restoreStdinAfterInk();\n        resolve(result);\n      })\n      .catch(() => {\n        clear();\n        restoreStdinAfterInk();\n        resolve({\n          selected: [],\n          cancelled: true,\n        });\n      });\n  });\n}\n","/**\n * Shared reference selection utility for interactive ID selection.\n *\n * This module provides a reusable function to select references interactively\n * using the existing search prompt infrastructure.\n */\n\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport { search } from \"../search/matcher.js\";\nimport { tokenize } from \"../search/tokenizer.js\";\nimport { type SearchPromptConfig, runSearchPrompt } from \"./search-prompt.js\";\nimport { checkTTY } from \"./tty.js\";\n\n/**\n * Options for reference selection\n */\nexport interface ReferenceSelectOptions {\n  /** Whether to allow multiple selection (default: true) */\n  multiSelect: boolean;\n  /** Custom prompt message */\n  prompt?: string;\n  /** Initial search query */\n  initialQuery?: string;\n}\n\n/**\n * Result from reference selection\n */\nexport interface ReferenceSelectResult {\n  /** Selected references */\n  selected: CslItem[];\n  /** Whether the selection was cancelled */\n  cancelled: boolean;\n}\n\n/**\n * Run interactive reference selection.\n *\n * Launches an interactive search prompt to select references from the library.\n * Supports both single and multiple selection modes.\n *\n * @param allReferences - All references available for selection\n * @param options - Selection options\n * @param config - Interactive prompt configuration\n * @returns Selection result with selected references\n * @throws TTYError if not running in a TTY environment\n */\nexport async function runReferenceSelect(\n  allReferences: CslItem[],\n  options: ReferenceSelectOptions,\n  config: SearchPromptConfig\n): Promise<ReferenceSelectResult> {\n  // Check TTY requirement\n  checkTTY();\n\n  // Create search function for runSearchPrompt\n  const searchFn = (query: string) => {\n    const { tokens } = tokenize(query);\n    return search(allReferences, tokens);\n  };\n\n  // Run search prompt\n  const searchResult = await runSearchPrompt(\n    allReferences,\n    searchFn,\n    config,\n    options.initialQuery ?? \"\"\n  );\n\n  if (searchResult.cancelled) {\n    return { selected: [], cancelled: true };\n  }\n\n  // For single-select mode, return only the first selected item\n  const selected = options.multiSelect ? searchResult.selected : searchResult.selected.slice(0, 1);\n\n  return {\n    selected,\n    cancelled: false,\n  };\n}\n\n/**\n * Options for selectReferencesOrExit helper\n */\nexport interface SelectReferencesOrExitOptions {\n  /** Whether to allow multiple selection */\n  multiSelect: boolean;\n  /** Initial search query */\n  initialQuery?: string;\n}\n\n/**\n * Select references interactively or exit if cancelled/empty.\n *\n * This is a convenience wrapper around runReferenceSelect that handles\n * common patterns:\n * - Exits with code 0 if library is empty\n * - Exits with code 0 if selection is cancelled\n * - Returns selected identifiers\n *\n * @param allReferences - All references available for selection\n * @param options - Selection options\n * @param config - Interactive prompt configuration\n * @returns Array of selected reference IDs (never empty)\n */\nexport async function selectReferencesOrExit(\n  allReferences: CslItem[],\n  options: SelectReferencesOrExitOptions,\n  config: SearchPromptConfig\n): Promise<string[]> {\n  if (allReferences.length === 0) {\n    process.stderr.write(\"No references in library.\\n\");\n    process.exit(0);\n  }\n\n  const selectResult = await runReferenceSelect(allReferences, options, config);\n\n  if (selectResult.cancelled || selectResult.selected.length === 0) {\n    process.exit(0);\n  }\n\n  return selectResult.selected.map((item) => item.id);\n}\n\n/**\n * Select reference items interactively or exit if cancelled/empty.\n *\n * Similar to selectReferencesOrExit but returns full CslItem objects\n * instead of just identifiers. 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package/dist/chunks/{style-select-mEMoWbM2.js → style-select-COnY01qb.js}

@@ -2,8 +2,8 @@ import * as fs from "node:fs";
 import * as path from "node:path";
 import "ink";
 import "react";
-import { B as BUILTIN_STYLES } from "./index-D2HsxXnK.js";
-import "./index-QTYx5RaF.js";
+import { B as BUILTIN_STYLES } from "./index-of6eJn8N.js";
+import "./index-BEQ4YIXx.js";
 function expandTilde(filePath) {
   if (filePath.startsWith("~/")) {
     const home = process.env.HOME || process.env.USERPROFILE || "";
@@ -58,4 +58,4 @@ export {
   buildStyleChoices,
   listCustomStyles
 };
-//# sourceMappingURL=style-select-mEMoWbM2.js.map
+//# sourceMappingURL=style-select-COnY01qb.js.map

package/dist/chunks/{style-select-mEMoWbM2.js.map → style-select-COnY01qb.js.map}

@@ -1 +1 @@
-{"version":3,"file":"style-select-mEMoWbM2.js","sources":["../../src/features/interactive/style-select.ts"],"sourcesContent":["/**\n * Style selection prompt for citation style selection.\n *\n * Lists built-in styles and custom styles from csl_directory,\n * with the default style shown first.\n */\n\nimport * as fs from \"node:fs\";\nimport * as path from \"node:path\";\nimport { render, useApp } from \"ink\";\nimport { createElement } from \"react\";\nimport type React from \"react\";\nimport { BUILTIN_STYLES } from \"../../config/csl-styles.js\";\nimport { restoreStdinAfterInk } from \"./alternate-screen.js\";\nimport { Select, type SelectOption } from \"./components/index.js\";\n\n/**\n * Options for style selection\n */\nexport interface StyleSelectOptions {\n  /** Directory or directories containing custom CSL files */\n  cslDirectory?: string | string[];\n  /** Default style to show first */\n  defaultStyle?: string;\n}\n\n/**\n * Result from style selection\n */\nexport interface StyleSelectResult {\n  /** Selected style name */\n  style?: string;\n  /** Whether the selection was cancelled */\n  cancelled: boolean;\n}\n\n/**\n * Expand tilde (~) in path to home directory\n */\nfunction expandTilde(filePath: string): string {\n  if (filePath.startsWith(\"~/\")) {\n    const home = process.env.HOME || process.env.USERPROFILE || \"\";\n    return path.join(home, filePath.slice(2));\n  }\n  return filePath;\n}\n\n/**\n * List custom CSL style names from the specified directory/directories.\n *\n * @param cslDirectory - Directory or directories to search for CSL files\n * @returns Array of style names (without .csl extension)\n */\nexport function listCustomStyles(cslDirectory: string | string[] | undefined): string[] {\n  if (!cslDirectory) {\n    return [];\n  }\n\n  const directories = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];\n  const styles = new Set<string>();\n\n  for (const dir of directories) {\n    const expandedDir = expandTilde(dir);\n\n    if (!fs.existsSync(expandedDir)) {\n      continue;\n    }\n\n    try {\n      const files = fs.readdirSync(expandedDir);\n      for (const file of files) {\n        if (file.endsWith(\".csl\")) {\n          styles.add(file.slice(0, -4)); // Remove .csl extension\n        }\n      }\n    } catch {\n      // Ignore read errors\n    }\n  }\n\n  return Array.from(styles).sort();\n}\n\n/**\n * Build style choices for the selection prompt.\n *\n * @param customStyles - Custom style names from csl_directory\n * @param defaultStyle - Default style to show first\n * @returns Array of SelectOption for Ink Select prompt\n */\nexport function buildStyleChoices(\n  customStyles: string[],\n  defaultStyle = \"apa\"\n): SelectOption<string>[] {\n  const choices: SelectOption<string>[] = [];\n  const addedStyles = new Set<string>();\n\n  // Helper to add a style choice\n  const addChoice = (styleName: string, isDefault: boolean): void => {\n    if (addedStyles.has(styleName)) return;\n    addedStyles.add(styleName);\n\n    choices.push({\n      label: isDefault ? `${styleName} (default)` : styleName,\n      value: styleName,\n    });\n  };\n\n  // Add default style first\n  addChoice(defaultStyle, true);\n\n  // Add built-in styles\n  for (const style of BUILTIN_STYLES) {\n    addChoice(style, false);\n  }\n\n  // Add custom styles (excluding any that match built-in names)\n  for (const style of customStyles) {\n    addChoice(style, false);\n  }\n\n  return choices;\n}\n\n/**\n * Props for the StyleSelectApp component\n */\ninterface StyleSelectAppProps {\n  options: SelectOption<string>[];\n  onSelect: (value: string) => void;\n  onCancel: () => void;\n}\n\n/**\n * StyleSelectApp component - wraps Select for style selection\n */\nfunction StyleSelectApp({ options, onSelect, onCancel }: StyleSelectAppProps): React.ReactElement {\n  const { exit } = useApp();\n\n  const handleSelect = (value: string): void => {\n    onSelect(value);\n    exit();\n  };\n\n  const handleCancel = (): void => {\n    onCancel();\n    exit();\n  };\n\n  return createElement(Select<string>, {\n    options,\n    message: \"Select citation style:\",\n    onSelect: handleSelect,\n    onCancel: handleCancel,\n  });\n}\n\n/**\n * Run the style selection prompt.\n *\n * @param options - Style selection options\n * @returns Selection result with style name\n */\nexport async function runStyleSelect(options: StyleSelectOptions): Promise<StyleSelectResult> {\n  // List custom styles from csl_directory\n  const customStyles = listCustomStyles(options.cslDirectory);\n\n  // Build choices with default first\n  const choices = buildStyleChoices(customStyles, options.defaultStyle);\n\n  // Create a promise to capture the result\n  return new Promise<StyleSelectResult>((resolve) => {\n    let result: StyleSelectResult = { cancelled: true };\n\n    const handleSelect = (value: string): void => {\n      result = {\n        style: value,\n        cancelled: false,\n      };\n    };\n\n    const handleCancel = (): void => {\n      result = {\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app\n    const { waitUntilExit, clear } = render(\n      createElement(StyleSelectApp, {\n        options: choices,\n        onSelect: handleSelect,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, clear the screen, then resolve\n    waitUntilExit()\n      .then(() => {\n        clear();\n        restoreStdinAfterInk();\n        resolve(result);\n      })\n      .catch(() => {\n        clear();\n        restoreStdinAfterInk();\n        resolve({\n          cancelled: true,\n        });\n      });\n  });\n}\n"],"names":[],"mappings":";;;;;;AAuCA,SAAS,YAAY,UAA0B;AAC7C,MAAI,SAAS,WAAW,IAAI,GAAG;AAC7B,UAAM,OAAO,QAAQ,IAAI,QAAQ,QAAQ,IAAI,eAAe;AAC5D,WAAO,KAAK,KAAK,MAAM,SAAS,MAAM,CAAC,CAAC;AAAA,EAC1C;AACA,SAAO;AACT;AAQO,SAAS,iBAAiB,cAAuD;AACtF,MAAI,CAAC,cAAc;AACjB,WAAO,CAAA;AAAA,EACT;AAEA,QAAM,cAAc,MAAM,QAAQ,YAAY,IAAI,eAAe,CAAC,YAAY;AAC9E,QAAM,6BAAa,IAAA;AAEnB,aAAW,OAAO,aAAa;AAC7B,UAAM,cAAc,YAAY,GAAG;AAEnC,QAAI,CAAC,GAAG,WAAW,WAAW,GAAG;AAC/B;AAAA,IACF;AAEA,QAAI;AACF,YAAM,QAAQ,GAAG,YAAY,WAAW;AACxC,iBAAW,QAAQ,OAAO;AACxB,YAAI,KAAK,SAAS,MAAM,GAAG;AACzB,iBAAO,IAAI,KAAK,MAAM,GAAG,EAAE,CAAC;AAAA,QAC9B;AAAA,MACF;AAAA,IACF,QAAQ;AAAA,IAER;AAAA,EACF;AAEA,SAAO,MAAM,KAAK,MAAM,EAAE,KAAA;AAC5B;AASO,SAAS,kBACd,cACA,eAAe,OACS;AACxB,QAAM,UAAkC,CAAA;AACxC,QAAM,kCAAkB,IAAA;AAGxB,QAAM,YAAY,CAAC,WAAmB,cAA6B;AACjE,QAAI,YAAY,IAAI,SAAS,EAAG;AAChC,gBAAY,IAAI,SAAS;AAEzB,YAAQ,KAAK;AAAA,MACX,OAAO,YAAY,GAAG,SAAS,eAAe;AAAA,MAC9C,OAAO;AAAA,IAAA,CACR;AAAA,EACH;AAGA,YAAU,cAAc,IAAI;AAG5B,aAAW,SAAS,gBAAgB;AAClC,cAAU,OAAO,KAAK;AAAA,EACxB;AAGA,aAAW,SAAS,cAAc;AAChC,cAAU,OAAO,KAAK;AAAA,EACxB;AAEA,SAAO;AACT;"}
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cslDirectory : [cslDirectory];\n  const styles = new Set<string>();\n\n  for (const dir of directories) {\n    const expandedDir = expandTilde(dir);\n\n    if (!fs.existsSync(expandedDir)) {\n      continue;\n    }\n\n    try {\n      const files = fs.readdirSync(expandedDir);\n      for (const file of files) {\n        if (file.endsWith(\".csl\")) {\n          styles.add(file.slice(0, -4)); // Remove .csl extension\n        }\n      }\n    } catch {\n      // Ignore read errors\n    }\n  }\n\n  return Array.from(styles).sort();\n}\n\n/**\n * Build style choices for the selection prompt.\n *\n * @param customStyles - Custom style names from csl_directory\n * @param defaultStyle - Default style to show first\n * @returns Array of SelectOption for Ink Select prompt\n */\nexport function buildStyleChoices(\n  customStyles: string[],\n  defaultStyle = \"apa\"\n): SelectOption<string>[] {\n  const choices: SelectOption<string>[] = [];\n  const addedStyles = new Set<string>();\n\n  // Helper to add a style choice\n  const addChoice = (styleName: string, isDefault: boolean): void => {\n    if (addedStyles.has(styleName)) return;\n    addedStyles.add(styleName);\n\n    choices.push({\n      label: isDefault ? `${styleName} (default)` : styleName,\n      value: styleName,\n    });\n  };\n\n  // Add default style first\n  addChoice(defaultStyle, true);\n\n  // Add built-in styles\n  for (const style of BUILTIN_STYLES) {\n    addChoice(style, false);\n  }\n\n  // Add custom styles (excluding any that match built-in names)\n  for (const style of customStyles) {\n    addChoice(style, false);\n  }\n\n  return choices;\n}\n\n/**\n * Props for the StyleSelectApp component\n */\ninterface StyleSelectAppProps {\n  options: SelectOption<string>[];\n  onSelect: (value: string) => void;\n  onCancel: () => void;\n}\n\n/**\n * StyleSelectApp component - wraps Select for style selection\n */\nfunction StyleSelectApp({ options, onSelect, onCancel }: StyleSelectAppProps): React.ReactElement {\n  const { exit } = useApp();\n\n  const handleSelect = (value: string): void => {\n    onSelect(value);\n    exit();\n  };\n\n  const handleCancel = (): void => {\n    onCancel();\n    exit();\n  };\n\n  return createElement(Select<string>, {\n    options,\n    message: \"Select citation style:\",\n    onSelect: handleSelect,\n    onCancel: handleCancel,\n  });\n}\n\n/**\n * Run the style selection prompt.\n *\n * @param options - Style selection options\n * @returns Selection result with style name\n */\nexport async function runStyleSelect(options: StyleSelectOptions): Promise<StyleSelectResult> {\n  // List custom styles from csl_directory\n  const customStyles = listCustomStyles(options.cslDirectory);\n\n  // Build choices with default first\n  const choices = buildStyleChoices(customStyles, options.defaultStyle);\n\n  // Create a promise to capture the result\n  return new Promise<StyleSelectResult>((resolve) => {\n    let result: StyleSelectResult = { cancelled: true };\n\n    const handleSelect = (value: string): void => {\n      result = {\n        style: value,\n        cancelled: false,\n      };\n    };\n\n    const handleCancel = (): void => {\n      result = {\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app\n    const { waitUntilExit, clear } = render(\n      createElement(StyleSelectApp, {\n        options: choices,\n        onSelect: handleSelect,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, clear the screen, then resolve\n    waitUntilExit()\n      .then(() => {\n        clear();\n        restoreStdinAfterInk();\n        resolve(result);\n      })\n      .catch(() => {\n        clear();\n        restoreStdinAfterInk();\n        resolve({\n          cancelled: true,\n        });\n      });\n  });\n}\n"],"names":[],"mappings":";;;;;;AAuCA,SAAS,YAAY,UAA0B;AAC7C,MAAI,SAAS,WAAW,IAAI,GAAG;AAC7B,UAAM,OAAO,QAAQ,IAAI,QAAQ,QAAQ,IAAI,eAAe;AAC5D,WAAO,KAAK,KAAK,MAAM,SAAS,MAAM,CAAC,CAAC;AAAA,EAC1C;AACA,SAAO;AACT;AAQO,SAAS,iBAAiB,cAAuD;AACtF,MAAI,CAAC,cAAc;AACjB,WAAO,CAAA;AAAA,EACT;AAEA,QAAM,cAAc,MAAM,QAAQ,YAAY,IAAI,eAAe,CAAC,YAAY;AAC9E,QAAM,6BAAa,IAAA;AAEnB,aAAW,OAAO,aAAa;AAC7B,UAAM,cAAc,YAAY,GAAG;AAEnC,QAAI,CAAC,GAAG,WAAW,WAAW,GAAG;AAC/B;AAAA,IACF;AAEA,QAAI;AACF,YAAM,QAAQ,GAAG,YAAY,WAAW;AACxC,iBAAW,QAAQ,OAAO;AACxB,YAAI,KAAK,SAAS,MAAM,GAAG;AACzB,iBAAO,IAAI,KAAK,MAAM,GAAG,EAAE,CAAC;AAAA,QAC9B;AAAA,MACF;AAAA,IACF,QAAQ;AAAA,IAER;AAAA,EACF;AAEA,SAAO,MAAM,KAAK,MAAM,EAAE,KAAA;AAC5B;AASO,SAAS,kBACd,cACA,eAAe,OACS;AACxB,QAAM,UAAkC,CAAA;AACxC,QAAM,kCAAkB,IAAA;AAGxB,QAAM,YAAY,CAAC,WAAmB,cAA6B;AACjE,QAAI,YAAY,IAAI,SAAS,EAAG;AAChC,gBAAY,IAAI,SAAS;AAEzB,YAAQ,KAAK;AAAA,MACX,OAAO,YAAY,GAAG,SAAS,eAAe;AAAA,MAC9C,OAAO;AAAA,IAAA,CACR;AAAA,EACH;AAGA,YAAU,cAAc,IAAI;AAG5B,aAAW,SAAS,gBAAgB;AAClC,cAAU,OAAO,KAAK;AAAA,EACxB;AAGA,aAAW,SAAS,cAAc;AAChC,cAAU,OAAO,KAAK;AAAA,EACxB;AAEA,SAAO;AACT;"}

package/dist/cli/commands/check.d.ts

@@ -10,9 +10,10 @@ export interface CheckCommandOptions {
     search?: string;
     output?: "text" | "json";
     full?: boolean;
-    noSave?: boolean;
+    save?: boolean;
     days?: number;
     fix?: boolean;
+    metadata?: boolean;
 }
 export type CheckCommandResult = CheckOperationResult;
 /**

package/dist/cli/commands/check.d.ts.map

@@ -1 +1 @@
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package/dist/cli/index.d.ts.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -1,5 +1,5 @@
 import "commander";
-import { c, m } from "./chunks/index-QTYx5RaF.js";
+import { c, m } from "./chunks/index-BEQ4YIXx.js";
 import "./chunks/file-watcher-Dlx0PolG.js";
 export {
   c as createProgram,

package/dist/features/check/checker.d.ts

@@ -6,6 +6,7 @@ export interface CheckConfig {
         email?: string;
         apiKey?: string;
     };
+    metadata?: boolean;
 }
 /**
  * Check a single reference against external sources for status changes.

package/dist/features/check/checker.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"checker.d.ts","sourceRoot":"","sources":["../../../src/features/check/checker.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAE5D,OAAO,KAAK,EAAgB,WAAW,EAAE,MAAM,YAAY,CAAC;AAE5D,MAAM,WAAW,WAAW;IAC1B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;CAC9C;AAED;;;;;;GAMG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,OAAO,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,WAAW,CAAC,CAoC9F"}
+{"version":3,"file":"checker.d.ts","sourceRoot":"","sources":["../../../src/features/check/checker.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAE5D,OAAO,KAAK,EAAgB,WAAW,EAAE,MAAM,YAAY,CAAC;AAE5D,MAAM,WAAW,WAAW;IAC1B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC;IAC7C,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAOD;;;;;;GAMG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,OAAO,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,WAAW,CAAC,CAwC9F"}

package/dist/features/check/crossref-client.d.ts

@@ -4,9 +4,25 @@ export interface CrossrefUpdateInfo {
     label?: string;
     date?: string;
 }
+export interface RemoteMetadata {
+    title?: string;
+    author?: Array<{
+        family?: string;
+        given?: string;
+    }>;
+    containerTitle?: string;
+    type?: string;
+    page?: string;
+    volume?: string;
+    issue?: string;
+    issued?: {
+        "date-parts"?: number[][];
+    };
+}
 export type CrossrefResult = {
     success: true;
     updates: CrossrefUpdateInfo[];
+    metadata?: RemoteMetadata;
 } | {
     success: false;
     error: string;

package/dist/features/check/crossref-client.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"crossref-client.d.ts","sourceRoot":"","sources":["../../../src/features/check/crossref-client.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,kBAAkB;IACjC,IAAI,EAAE,MAAM,CAAC;IACb,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,MAAM,cAAc,GACtB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,OAAO,EAAE,kBAAkB,EAAE,CAAA;CAAE,GAChD;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAiBtC;;;;;;GAMG;AACH,wBAAsB,aAAa,CACjC,GAAG,EAAE,MAAM,EACX,MAAM,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,GAC1B,OAAO,CAAC,cAAc,CAAC,CAuCzB"}
+{"version":3,"file":"crossref-client.d.ts","sourceRoot":"","sources":["../../../src/features/check/crossref-client.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,kBAAkB;IACjC,IAAI,EAAE,MAAM,CAAC;IACb,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,KAAK,CAAC;QAAE,MAAM,CAAC,EAAE,MAAM,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACpD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE;QAAE,YAAY,CAAC,EAAE,MAAM,EAAE,EAAE,CAAA;KAAE,CAAC;CACxC;AAED,MAAM,MAAM,cAAc,GACtB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,OAAO,EAAE,kBAAkB,EAAE,CAAC;IAAC,QAAQ,CAAC,EAAE,cAAc,CAAA;CAAE,GAC3E;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAsEtC;;;;;;GAMG;AACH,wBAAsB,aAAa,CACjC,GAAG,EAAE,MAAM,EACX,MAAM,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,GAC1B,OAAO,CAAC,cAAc,CAAC,CAkDzB"}

package/dist/features/check/fix-actions.d.ts

@@ -1,7 +1,7 @@
 import type { CslItem } from "../../core/csl-json/types.js";
 import type { ILibrary } from "../../core/library-interface.js";
 import type { CheckFinding } from "./types.js";
-export type FixActionType = "add_retracted_tag" | "add_retraction_note" | "remove_from_library" | "update_from_published" | "add_version_tag" | "add_concern_tag" | "add_concern_note" | "skip";
+export type FixActionType = "add_retracted_tag" | "add_retraction_note" | "remove_from_library" | "update_from_published" | "add_version_tag" | "add_concern_tag" | "add_concern_note" | "update_all_fields" | "update_selected_fields" | "skip";
 export interface FixAction {
     type: FixActionType;
     label: string;

package/dist/features/check/fix-actions.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"fix-actions.d.ts","sourceRoot":"","sources":["../../../src/features/check/fix-actions.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAChE,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAE/C,MAAM,MAAM,aAAa,GACrB,mBAAmB,GACnB,qBAAqB,GACrB,qBAAqB,GACrB,uBAAuB,GACvB,iBAAiB,GACjB,iBAAiB,GACjB,kBAAkB,GAClB,MAAM,CAAC;AAEX,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,aAAa,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,YAAY,GAAG,SAAS,EAAE,CAwB1E;AAsDD,wBAAsB,cAAc,CAClC,OAAO,EAAE,QAAQ,EACjB,IAAI,EAAE,OAAO,EACb,OAAO,EAAE,YAAY,EACrB,UAAU,EAAE,aAAa,GACxB,OAAO,CAAC,eAAe,CAAC,CAoD1B"}
+{"version":3,"file":"fix-actions.d.ts","sourceRoot":"","sources":["../../../src/features/check/fix-actions.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iCAAiC,CAAC;AAChE,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAE/C,MAAM,MAAM,aAAa,GACrB,mBAAmB,GACnB,qBAAqB,GACrB,qBAAqB,GACrB,uBAAuB,GACvB,iBAAiB,GACjB,iBAAiB,GACjB,kBAAkB,GAClB,mBAAmB,GACnB,wBAAwB,GACxB,MAAM,CAAC;AAEX,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,aAAa,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,YAAY,GAAG,SAAS,EAAE,CA8B1E;AA4HD,wBAAsB,cAAc,CAClC,OAAO,EAAE,QAAQ,EACjB,IAAI,EAAE,OAAO,EACb,OAAO,EAAE,YAAY,EACrB,UAAU,EAAE,aAAa,GACxB,OAAO,CAAC,eAAe,CAAC,CA4C1B"}