npm - @ncukondo/reference-manager - Versions diffs - 0.22.2 → 0.23.0 - Mend

@ncukondo/reference-manager 0.22.2 → 0.23.0

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package/dist/chunks/{index-B7NyGOm6.js.map → index-BSWbcT3c.js.map} RENAMED Viewed

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1	- {"version":3,"file":"index-B7NyGOm6.js","sources":["../../src/features/interactive/apps/SearchFlowApp.tsx","../../src/features/interactive/apps/runSearchFlow.ts","../../src/features/interactive/apps/CiteFlowApp.tsx","../../src/features/interactive/apps/runCiteFlow.ts"],"sourcesContent":["/*\n SearchFlowApp - Single App for search -t flow\n \n Manages state transitions: search → action → (style/output-format if needed)\n * Following React Ink Single App Pattern (ADR-015)\n /\n\nimport { Box, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement, useEffect, useState } from \"react\";\nimport type { CitationKeyFormat } from \"../../../config/schema.js\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport {\n type ActionMenuResult,\n type ActionType,\n OUTPUT_FORMAT_CHOICES,\n type OutputFormatType,\n STYLE_CHOICES,\n generateOutput,\n getActionChoices,\n isSideEffectAction,\n} from \"../action-menu.js\";\nimport {\n type Choice,\n SearchableMultiSelect,\n Select,\n type SortOption,\n} from \"../components/index.js\";\n\n/\n Flow states for the search flow\n /\ntype FlowState = \"search\" \| \"action\" \| \"style\" \| \"output-format\" \| \"exiting\";\n\n/\n Props for SearchFlowApp\n /\nexport interface SearchFlowAppProps {\n /* Choices for the search prompt /\n choices: Choice<CslItem>[];\n /* Filter function for search /\n filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n /* Number of visible items /\n visibleCount: number;\n /* Default sort option /\n defaultSort: SortOption;\n /* Default citation key format /\n defaultKeyFormat: CitationKeyFormat;\n /* Default citation style /\n defaultStyle: string;\n /* Debounce delay in milliseconds for search filtering /\n debounceMs?: number;\n /* Callback when flow completes /\n onComplete: (result: ActionMenuResult) => void;\n /* Callback when flow is cancelled /\n onCancel: () => void;\n}\n\n/\n SearchFlowApp component\n \n Single App that manages search → action → style/output-format flow\n /\nexport function SearchFlowApp({\n choices,\n filterFn,\n visibleCount,\n defaultSort,\n defaultKeyFormat,\n defaultStyle,\n debounceMs,\n onComplete,\n onCancel,\n}: SearchFlowAppProps): React.ReactElement {\n const { exit } = useApp();\n const [state, setState] = useState<FlowState>(\"search\");\n const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n const [pendingResult, setPendingResult] = useState<ActionMenuResult \| null>(null);\n\n // Exit when entering \"exiting\" state (after rendering empty component)\n useEffect(() => {\n if (state === \"exiting\" && pendingResult) {\n exit();\n if (pendingResult.cancelled) {\n onCancel();\n } else {\n onComplete(pendingResult);\n }\n }\n }, [state, pendingResult, exit, onCancel, onComplete]);\n\n // Transition to exiting state with result\n const exitWith = (result: ActionMenuResult) => {\n setPendingResult(result);\n setState(\"exiting\");\n };\n\n // Handle search submission\n const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n if (selected.length === 0) {\n exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n return;\n }\n setSelectedItems(selected.map((c) => c.value));\n setState(\"action\");\n };\n\n // Handle search cancel\n const handleSearchCancel = () => {\n exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n };\n\n // Handle action selection\n const handleActionSelect = (action: ActionType) => {\n if (action === \"cancel\") {\n exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n return;\n }\n\n // If cite-choose, go to style selection\n if (action === \"cite-choose\") {\n setState(\"style\");\n return;\n }\n\n // If output-format, go to output format submenu\n if (action === \"output-format\") {\n setState(\"output-format\");\n return;\n }\n\n // Handle side-effect actions\n if (isSideEffectAction(action)) {\n exitWith({ action, output: \"\", cancelled: false, selectedItems });\n return;\n }\n\n // Generate output and complete\n const output = generateOutput(action, selectedItems, {\n defaultKeyFormat,\n defaultStyle,\n });\n exitWith({ action, output, cancelled: false });\n };\n\n // Handle action cancel (go back to search)\n const handleActionCancel = () => {\n setState(\"search\");\n };\n\n // Handle style selection\n const handleStyleSelect = (style: string) => {\n const output = generateOutput(\"cite-choose\", selectedItems, {\n defaultKeyFormat,\n defaultStyle: style,\n });\n exitWith({ action: \"cite-choose\", output, cancelled: false });\n };\n\n // Handle style cancel (go back to action)\n const handleStyleCancel = () => {\n setState(\"action\");\n };\n\n // Handle output format selection\n const handleOutputFormatSelect = (format: OutputFormatType) => {\n if (format === \"cancel\") {\n setState(\"action\");\n return;\n }\n\n const output = generateOutput(format, selectedItems, {\n defaultKeyFormat,\n defaultStyle,\n });\n exitWith({ action: \"output-format\", output, cancelled: false });\n };\n\n // Handle output format cancel (go back to action)\n const handleOutputFormatCancel = () => {\n setState(\"action\");\n };\n\n // Render based on current state\n if (state === \"exiting\") {\n // Empty component - Ink will clear the previous content\n return createElement(Box);\n }\n\n if (state === \"search\") {\n return createElement(SearchableMultiSelect<CslItem>, {\n choices,\n filterFn,\n visibleCount,\n onSubmit: handleSearchSubmit,\n onCancel: handleSearchCancel,\n header: \"Search references\",\n placeholder: \"Type to search...\",\n defaultSort,\n ...(debounceMs !== undefined && { debounceMs }),\n });\n }\n\n if (state === \"action\") {\n const count = selectedItems.length;\n const refWord = count === 1 ? \"reference\" : \"references\";\n return createElement(Select<ActionType>, {\n key: \"action\",\n options: getActionChoices(count, { defaultKeyFormat }),\n message: `Action for ${count} selected ${refWord}:`,\n onSelect: handleActionSelect,\n onCancel: handleActionCancel,\n });\n }\n\n if (state === \"output-format\") {\n return createElement(Select<OutputFormatType>, {\n key: \"output-format\",\n options: OUTPUT_FORMAT_CHOICES,\n message: \"Select output format:\",\n onSelect: handleOutputFormatSelect,\n onCancel: handleOutputFormatCancel,\n });\n }\n\n // state === \"style\"\n return createElement(Select<string>, {\n key: \"style\",\n options: STYLE_CHOICES,\n message: \"Select citation style:\",\n onSelect: handleStyleSelect,\n onCancel: handleStyleCancel,\n });\n}\n","/\n Runner for SearchFlowApp\n \n Provides the public API for running the search flow.\n /\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type { CitationKeyFormat } from \"../../../config/schema.js\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport { buildResourceIndicators } from \"../../format/resource-indicators.js\";\nimport type { SearchResult } from \"../../search/types.js\";\nimport type { ActionMenuResult } from \"../action-menu.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport { type Choice, type SortOption, calculateEffectiveLimit } from \"../components/index.js\";\nimport { formatAuthors } from \"../format.js\";\nimport { SearchFlowApp } from \"./SearchFlowApp.js\";\n\n/\n Configuration for the search flow\n /\nexport interface SearchFlowConfig {\n /* Maximum number of results to display /\n limit: number;\n /* Debounce delay in milliseconds for search filtering /\n debounceMs: number;\n /* Default citation key format /\n defaultKeyFormat?: CitationKeyFormat;\n /* Default citation style /\n defaultStyle?: string;\n}\n\n/\n Search function type for filtering references\n /\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/\n Extract year from CSL item\n /\nfunction extractYear(item: CslItem): number \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n return firstDatePart[0];\n}\n\n/\n Extract published date from CSL item\n /\nfunction extractPublishedDate(item: CslItem): Date \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n const [year, month = 1, day = 1] = firstDatePart;\n if (year === undefined) return undefined;\n return new Date(year, month - 1, day);\n}\n\n/\n Extract updated date from CSL item (from custom.timestamp)\n /\nfunction extractUpdatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.timestamp;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Extract created date from CSL item (from custom.created_at)\n /\nfunction extractCreatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.created_at;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Format identifiers for meta line\n /\nfunction formatIdentifiers(item: CslItem): string {\n const parts: string[] = [];\n if (item.DOI) parts.push(`DOI: ${item.DOI}`);\n if (item.PMID) parts.push(`PMID: ${item.PMID}`);\n if (item.PMCID) parts.push(`PMCID: ${item.PMCID}`);\n if (item.ISBN) parts.push(`ISBN: ${item.ISBN}`);\n return parts.join(\" · \");\n}\n\n/\n Format item type for display\n /\nfunction formatType(type: string): string {\n const typeMap: Record<string, string> = {\n \"article-journal\": \"Journal article\",\n \"article-magazine\": \"Magazine article\",\n \"article-newspaper\": \"Newspaper article\",\n book: \"Book\",\n chapter: \"Book chapter\",\n \"paper-conference\": \"Conference paper\",\n thesis: \"Thesis\",\n report: \"Report\",\n webpage: \"Web page\",\n };\n return typeMap[type] ?? type;\n}\n\n/\n Convert CslItem to Choice for SearchableMultiSelect\n /\nexport function toChoice(item: CslItem): Choice<CslItem> {\n const authors = formatAuthors(item.author);\n const year = extractYear(item);\n const identifiers = formatIdentifiers(item);\n const itemType = formatType(item.type);\n\n // Build meta line: Year · Type · Identifiers\n const metaParts: string[] = [];\n if (year) metaParts.push(String(year));\n metaParts.push(itemType);\n if (identifiers) metaParts.push(identifiers);\n\n const updatedDate = extractUpdatedDate(item);\n const createdDate = extractCreatedDate(item);\n const publishedDate = extractPublishedDate(item);\n\n // Prepend resource indicators to meta if present\n const indicators = buildResourceIndicators(item);\n const metaStr = metaParts.join(\" · \");\n const meta = indicators ? `${indicators} ${metaStr}` : metaStr;\n\n return {\n id: item.id,\n title: item.title ?? \"(No title)\",\n subtitle: authors \|\| \"(No authors)\",\n meta,\n value: item,\n ...(updatedDate && { updatedDate }),\n ...(createdDate && { createdDate }),\n ...(publishedDate && { publishedDate }),\n };\n}\n\n/\n Run the search flow (search → action → style if needed)\n \n This is the main entry point for the `search -t` command.\n /\nexport async function runSearchFlow(\n allReferences: CslItem[],\n searchFn: SearchFunction,\n config: SearchFlowConfig\n): Promise<ActionMenuResult> {\n // Convert references to choices and build lookup map\n const choices = allReferences.map(toChoice);\n const choiceMap = new Map(choices.map((c) => [c.id, c]));\n\n // Calculate effective visible count\n const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n // Create filter function using the provided search function\n const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n if (!query.trim()) return choices;\n\n const results = searchFn(query);\n return results.flatMap((r) => {\n const choice = choiceMap.get(r.reference.id);\n return choice ? [choice] : [];\n });\n };\n\n // Default sort option\n const defaultSort: SortOption = \"updated-desc\";\n\n // Create a promise to capture the result\n return new Promise<ActionMenuResult>((resolve) => {\n let flowResult: ActionMenuResult = {\n action: \"cancel\",\n output: \"\",\n cancelled: true,\n };\n\n const handleComplete = (result: ActionMenuResult): void => {\n flowResult = result;\n };\n\n const handleCancel = (): void => {\n flowResult = {\n action: \"cancel\",\n output: \"\",\n cancelled: true,\n };\n };\n\n // Render the Ink app (single render for entire flow)\n const { waitUntilExit } = render(\n createElement(SearchFlowApp, {\n choices,\n filterFn,\n visibleCount: effectiveLimit,\n defaultSort,\n defaultKeyFormat: config.defaultKeyFormat ?? \"pandoc\",\n defaultStyle: config.defaultStyle ?? \"apa\",\n debounceMs: config.debounceMs,\n onComplete: handleComplete,\n onCancel: handleCancel,\n })\n );\n\n // Wait for the app to exit, then resolve\n waitUntilExit()\n .then(() => {\n restoreStdinAfterInk();\n resolve(flowResult);\n })\n .catch(() => {\n restoreStdinAfterInk();\n resolve({\n action: \"cancel\",\n output: \"\",\n cancelled: true,\n });\n });\n });\n}\n","/\n CiteFlowApp - Single App for cite command flow\n \n Implements the Single App Pattern (ADR-015) for the cite command.\n * Manages state transitions: reference selection → style selection → exiting\n /\n\nimport { Box, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement, useEffect, useState } from \"react\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport { SearchableMultiSelect } from \"../components/SearchableMultiSelect.js\";\nimport { Select, type SelectOption } from \"../components/Select.js\";\nimport type { Choice, SortOption } from \"../components/index.js\";\n\n// Flow states\ntype FlowState = \"search\" \| \"style\" \| \"exiting\";\n\n/\n Result from the cite flow\n /\nexport interface CiteFlowResult {\n /* Selected reference IDs /\n identifiers: string[];\n /* Selected style (if style selection was shown) /\n style?: string;\n /* Whether the flow was cancelled /\n cancelled: boolean;\n}\n\n/\n Props for CiteFlowApp\n /\nexport interface CiteFlowAppProps {\n /* All reference choices /\n choices: Choice<CslItem>[];\n /* Filter function for search /\n filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n /* Number of visible items /\n visibleCount: number;\n /* Default sort option /\n defaultSort: SortOption;\n /* Style options for style selection /\n styleOptions: SelectOption<string>[];\n /* Whether to show style selection (false if style already specified) /\n showStyleSelect: boolean;\n /* Callback when flow completes /\n onComplete: (result: CiteFlowResult) => void;\n /* Callback when flow is cancelled /\n onCancel: () => void;\n}\n\n/\n CiteFlowApp component\n \n Single Ink app that handles the entire cite flow:\n * 1. Reference selection (SearchableMultiSelect)\n * 2. Style selection (Select) - optional\n * 3. Exit\n /\nexport function CiteFlowApp({\n choices,\n filterFn,\n visibleCount,\n defaultSort,\n styleOptions,\n showStyleSelect,\n onComplete,\n onCancel,\n}: CiteFlowAppProps): React.ReactElement {\n const { exit } = useApp();\n const [state, setState] = useState<FlowState>(\"search\");\n const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n const [pendingResult, setPendingResult] = useState<CiteFlowResult \| null>(null);\n\n // Exit when entering \"exiting\" state\n useEffect(() => {\n if (state === \"exiting\" && pendingResult) {\n exit();\n if (pendingResult.cancelled) {\n onCancel();\n } else {\n onComplete(pendingResult);\n }\n }\n }, [state, pendingResult, exit, onCancel, onComplete]);\n\n // Transition to exiting state with result\n const exitWith = (result: CiteFlowResult) => {\n setPendingResult(result);\n setState(\"exiting\");\n };\n\n // Handle search submission\n const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n if (selected.length === 0) {\n exitWith({ identifiers: [], cancelled: true });\n return;\n }\n const items = selected.map((c) => c.value);\n setSelectedItems(items);\n\n if (showStyleSelect) {\n setState(\"style\");\n } else {\n // No style selection needed, complete immediately\n exitWith({\n identifiers: items.map((item) => item.id),\n cancelled: false,\n });\n }\n };\n\n // Handle search cancel\n const handleSearchCancel = () => {\n exitWith({ identifiers: [], cancelled: true });\n };\n\n // Handle style selection\n const handleStyleSelect = (style: string) => {\n exitWith({\n identifiers: selectedItems.map((item) => item.id),\n style,\n cancelled: false,\n });\n };\n\n // Handle style cancel (go back to search)\n const handleStyleCancel = () => {\n setState(\"search\");\n };\n\n // Render based on current state\n if (state === \"exiting\") {\n return createElement(Box);\n }\n\n if (state === \"search\") {\n return createElement(SearchableMultiSelect<CslItem>, {\n choices,\n filterFn,\n visibleCount,\n onSubmit: handleSearchSubmit,\n onCancel: handleSearchCancel,\n header: \"Select references to cite\",\n placeholder: \"Type to search...\",\n defaultSort,\n });\n }\n\n // state === \"style\"\n const count = selectedItems.length;\n const refWord = count === 1 ? \"reference\" : \"references\";\n return createElement(Select<string>, {\n options: styleOptions,\n message: `Select citation style for ${count} ${refWord}:`,\n onSelect: handleStyleSelect,\n onCancel: handleStyleCancel,\n });\n}\n","/\n Runner for CiteFlowApp\n \n Provides the public API for running the cite flow.\n /\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport type { SearchResult } from \"../../search/types.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport {\n type Choice,\n type SelectOption,\n type SortOption,\n calculateEffectiveLimit,\n} from \"../components/index.js\";\nimport { formatAuthors } from \"../format.js\";\nimport { CiteFlowApp, type CiteFlowResult } from \"./CiteFlowApp.js\";\n\n/\n Configuration for the cite flow\n /\nexport interface CiteFlowConfig {\n /* Maximum number of results to display /\n limit: number;\n}\n\n/\n Search function type for filtering references\n /\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/\n Extract year from CSL item\n /\nfunction extractYear(item: CslItem): number \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n return firstDatePart[0];\n}\n\n/\n Extract published date from CSL item\n /\nfunction extractPublishedDate(item: CslItem): Date \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n const [year, month = 1, day = 1] = firstDatePart;\n if (year === undefined) return undefined;\n return new Date(year, month - 1, day);\n}\n\n/\n Extract updated date from CSL item (from custom.timestamp)\n /\nfunction extractUpdatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.timestamp;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Extract created date from CSL item (from custom.created_at)\n /\nfunction extractCreatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.created_at;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Format identifiers for meta line\n /\nfunction formatIdentifiers(item: CslItem): string {\n const parts: string[] = [];\n if (item.DOI) parts.push(`DOI: ${item.DOI}`);\n if (item.PMID) parts.push(`PMID: ${item.PMID}`);\n if (item.PMCID) parts.push(`PMCID: ${item.PMCID}`);\n if (item.ISBN) parts.push(`ISBN: ${item.ISBN}`);\n return parts.join(\" · \");\n}\n\n/\n Format item type for display\n /\nfunction formatType(type: string): string {\n const typeMap: Record<string, string> = {\n \"article-journal\": \"Journal article\",\n \"article-magazine\": \"Magazine article\",\n \"article-newspaper\": \"Newspaper article\",\n book: \"Book\",\n chapter: \"Book chapter\",\n \"paper-conference\": \"Conference paper\",\n thesis: \"Thesis\",\n report: \"Report\",\n webpage: \"Web page\",\n };\n return typeMap[type] ?? type;\n}\n\n/\n Convert CslItem to Choice for SearchableMultiSelect\n /\nfunction toChoice(item: CslItem): Choice<CslItem> {\n const authors = formatAuthors(item.author);\n const year = extractYear(item);\n const identifiers = formatIdentifiers(item);\n const itemType = formatType(item.type);\n\n // Build meta line: Year · Type · Identifiers\n const metaParts: string[] = [];\n if (year) metaParts.push(String(year));\n metaParts.push(itemType);\n if (identifiers) metaParts.push(identifiers);\n\n const updatedDate = extractUpdatedDate(item);\n const createdDate = extractCreatedDate(item);\n const publishedDate = extractPublishedDate(item);\n\n return {\n id: item.id,\n title: item.title ?? \"(No title)\",\n subtitle: authors \|\| \"(No authors)\",\n meta: metaParts.join(\" · \"),\n value: item,\n ...(updatedDate && { updatedDate }),\n ...(createdDate && { createdDate }),\n ...(publishedDate && { publishedDate }),\n };\n}\n\n/\n Options for running the cite flow\n /\nexport interface RunCiteFlowOptions {\n /* All references available for selection /\n allReferences: CslItem[];\n /* Search function for filtering /\n searchFn: SearchFunction;\n /* Flow configuration /\n config: CiteFlowConfig;\n /* Style options for style selection /\n styleOptions: SelectOption<string>[];\n /* Whether to show style selection /\n showStyleSelect: boolean;\n}\n\n/\n Run the cite flow (reference selection → style selection if needed)\n \n This is the main entry point for interactive cite command.\n */\nexport async function runCiteFlow(options: RunCiteFlowOptions): Promise<CiteFlowResult> {\n const { allReferences, searchFn, config, styleOptions, showStyleSelect } = options;\n\n // Convert references to choices\n const choices = allReferences.map(toChoice);\n\n // Calculate effective visible count\n const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n // Create filter function using the provided search function\n const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n if (!query.trim()) return choices;\n\n const results = searchFn(query);\n return results.map((r) => toChoice(r.reference));\n };\n\n // Default sort option\n const defaultSort: SortOption = \"updated-desc\";\n\n // Create a promise to capture the result\n return new Promise<CiteFlowResult>((resolve) => {\n let flowResult: CiteFlowResult = {\n identifiers: [],\n cancelled: true,\n };\n\n const handleComplete = (result: CiteFlowResult): void => {\n flowResult = result;\n };\n\n const handleCancel = (): void => {\n flowResult = {\n identifiers: [],\n cancelled: true,\n };\n };\n\n // Render the Ink app (single render for entire flow)\n const { waitUntilExit } = render(\n createElement(CiteFlowApp, {\n choices,\n filterFn,\n visibleCount: effectiveLimit,\n defaultSort,\n styleOptions,\n showStyleSelect,\n onComplete: handleComplete,\n onCancel: handleCancel,\n })\n );\n\n // Wait for the app to exit, then resolve\n waitUntilExit()\n .then(() => {\n restoreStdinAfterInk();\n resolve(flowResult);\n })\n .catch(() => {\n restoreStdinAfterInk();\n resolve({\n identifiers: [],\n cancelled: true,\n });\n });\n 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1	+ {"version":3,"file":"index-BSWbcT3c.js","sources":["../../src/features/interactive/apps/SearchFlowApp.tsx","../../src/features/interactive/apps/runSearchFlow.ts","../../src/features/interactive/apps/CiteFlowApp.tsx","../../src/features/interactive/apps/runCiteFlow.ts"],"sourcesContent":["/*\n SearchFlowApp - Single App for search -t flow\n \n Manages state transitions: search → action → (style/output-format if needed)\n * Following React Ink Single App Pattern (ADR-015)\n /\n\nimport { Box, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement, useEffect, useState } from \"react\";\nimport type { CitationKeyFormat } from \"../../../config/schema.js\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport {\n type ActionMenuResult,\n type ActionType,\n OUTPUT_FORMAT_CHOICES,\n type OutputFormatType,\n STYLE_CHOICES,\n generateOutput,\n getActionChoices,\n isSideEffectAction,\n} from \"../action-menu.js\";\nimport {\n type Choice,\n SearchableMultiSelect,\n Select,\n type SortOption,\n} from \"../components/index.js\";\n\n/\n Flow states for the search flow\n /\ntype FlowState = \"search\" \| \"action\" \| \"style\" \| \"output-format\" \| \"exiting\";\n\n/\n Props for SearchFlowApp\n /\nexport interface SearchFlowAppProps {\n /* Choices for the search prompt /\n choices: Choice<CslItem>[];\n /* Filter function for search /\n filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n /* Number of visible items /\n visibleCount: number;\n /* Default sort option /\n defaultSort: SortOption;\n /* Default citation key format /\n defaultKeyFormat: CitationKeyFormat;\n /* Default citation style /\n defaultStyle: string;\n /* Debounce delay in milliseconds for search filtering /\n debounceMs?: number;\n /* Callback when flow completes /\n onComplete: (result: ActionMenuResult) => void;\n /* Callback when flow is cancelled /\n onCancel: () => void;\n}\n\n/\n SearchFlowApp component\n \n Single App that manages search → action → style/output-format flow\n /\nexport function SearchFlowApp({\n choices,\n filterFn,\n visibleCount,\n defaultSort,\n defaultKeyFormat,\n defaultStyle,\n debounceMs,\n onComplete,\n onCancel,\n}: SearchFlowAppProps): React.ReactElement {\n const { exit } = useApp();\n const [state, setState] = useState<FlowState>(\"search\");\n const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n const [pendingResult, setPendingResult] = useState<ActionMenuResult \| null>(null);\n\n // Exit when entering \"exiting\" state (after rendering empty component)\n useEffect(() => {\n if (state === \"exiting\" && pendingResult) {\n exit();\n if (pendingResult.cancelled) {\n onCancel();\n } else {\n onComplete(pendingResult);\n }\n }\n }, [state, pendingResult, exit, onCancel, onComplete]);\n\n // Transition to exiting state with result\n const exitWith = (result: ActionMenuResult) => {\n setPendingResult(result);\n setState(\"exiting\");\n };\n\n // Handle search submission\n const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n if (selected.length === 0) {\n exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n return;\n }\n setSelectedItems(selected.map((c) => c.value));\n setState(\"action\");\n };\n\n // Handle search cancel\n const handleSearchCancel = () => {\n exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n };\n\n // Handle action selection\n const handleActionSelect = (action: ActionType) => {\n if (action === \"cancel\") {\n exitWith({ action: \"cancel\", output: \"\", cancelled: true });\n return;\n }\n\n // If cite-choose, go to style selection\n if (action === \"cite-choose\") {\n setState(\"style\");\n return;\n }\n\n // If output-format, go to output format submenu\n if (action === \"output-format\") {\n setState(\"output-format\");\n return;\n }\n\n // Handle side-effect actions\n if (isSideEffectAction(action)) {\n exitWith({ action, output: \"\", cancelled: false, selectedItems });\n return;\n }\n\n // Generate output and complete\n const output = generateOutput(action, selectedItems, {\n defaultKeyFormat,\n defaultStyle,\n });\n exitWith({ action, output, cancelled: false });\n };\n\n // Handle action cancel (go back to search)\n const handleActionCancel = () => {\n setState(\"search\");\n };\n\n // Handle style selection\n const handleStyleSelect = (style: string) => {\n const output = generateOutput(\"cite-choose\", selectedItems, {\n defaultKeyFormat,\n defaultStyle: style,\n });\n exitWith({ action: \"cite-choose\", output, cancelled: false });\n };\n\n // Handle style cancel (go back to action)\n const handleStyleCancel = () => {\n setState(\"action\");\n };\n\n // Handle output format selection\n const handleOutputFormatSelect = (format: OutputFormatType) => {\n if (format === \"cancel\") {\n setState(\"action\");\n return;\n }\n\n const output = generateOutput(format, selectedItems, {\n defaultKeyFormat,\n defaultStyle,\n });\n exitWith({ action: \"output-format\", output, cancelled: false });\n };\n\n // Handle output format cancel (go back to action)\n const handleOutputFormatCancel = () => {\n setState(\"action\");\n };\n\n // Render based on current state\n if (state === \"exiting\") {\n // Empty component - Ink will clear the previous content\n return createElement(Box);\n }\n\n if (state === \"search\") {\n return createElement(SearchableMultiSelect<CslItem>, {\n choices,\n filterFn,\n visibleCount,\n onSubmit: handleSearchSubmit,\n onCancel: handleSearchCancel,\n header: \"Search references\",\n placeholder: \"Type to search...\",\n defaultSort,\n ...(debounceMs !== undefined && { debounceMs }),\n });\n }\n\n if (state === \"action\") {\n const count = selectedItems.length;\n const refWord = count === 1 ? \"reference\" : \"references\";\n return createElement(Select<ActionType>, {\n key: \"action\",\n options: getActionChoices(count, { defaultKeyFormat }),\n message: `Action for ${count} selected ${refWord}:`,\n onSelect: handleActionSelect,\n onCancel: handleActionCancel,\n });\n }\n\n if (state === \"output-format\") {\n return createElement(Select<OutputFormatType>, {\n key: \"output-format\",\n options: OUTPUT_FORMAT_CHOICES,\n message: \"Select output format:\",\n onSelect: handleOutputFormatSelect,\n onCancel: handleOutputFormatCancel,\n });\n }\n\n // state === \"style\"\n return createElement(Select<string>, {\n key: \"style\",\n options: STYLE_CHOICES,\n message: \"Select citation style:\",\n onSelect: handleStyleSelect,\n onCancel: handleStyleCancel,\n });\n}\n","/\n Runner for SearchFlowApp\n \n Provides the public API for running the search flow.\n /\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type { CitationKeyFormat } from \"../../../config/schema.js\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport { buildResourceIndicators } from \"../../format/resource-indicators.js\";\nimport type { SearchResult } from \"../../search/types.js\";\nimport type { ActionMenuResult } from \"../action-menu.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport { type Choice, type SortOption, calculateEffectiveLimit } from \"../components/index.js\";\nimport { formatAuthors } from \"../format.js\";\nimport { SearchFlowApp } from \"./SearchFlowApp.js\";\n\n/\n Configuration for the search flow\n /\nexport interface SearchFlowConfig {\n /* Maximum number of results to display /\n limit: number;\n /* Debounce delay in milliseconds for search filtering /\n debounceMs: number;\n /* Default citation key format /\n defaultKeyFormat?: CitationKeyFormat;\n /* Default citation style /\n defaultStyle?: string;\n}\n\n/\n Search function type for filtering references\n /\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/\n Extract year from CSL item\n /\nfunction extractYear(item: CslItem): number \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n return firstDatePart[0];\n}\n\n/\n Extract published date from CSL item\n /\nfunction extractPublishedDate(item: CslItem): Date \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n const [year, month = 1, day = 1] = firstDatePart;\n if (year === undefined) return undefined;\n return new Date(year, month - 1, day);\n}\n\n/\n Extract updated date from CSL item (from custom.timestamp)\n /\nfunction extractUpdatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.timestamp;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Extract created date from CSL item (from custom.created_at)\n /\nfunction extractCreatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.created_at;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Format identifiers for meta line\n /\nfunction formatIdentifiers(item: CslItem): string {\n const parts: string[] = [];\n if (item.DOI) parts.push(`DOI: ${item.DOI}`);\n if (item.PMID) parts.push(`PMID: ${item.PMID}`);\n if (item.PMCID) parts.push(`PMCID: ${item.PMCID}`);\n if (item.ISBN) parts.push(`ISBN: ${item.ISBN}`);\n return parts.join(\" · \");\n}\n\n/\n Format item type for display\n /\nfunction formatType(type: string): string {\n const typeMap: Record<string, string> = {\n \"article-journal\": \"Journal article\",\n \"article-magazine\": \"Magazine article\",\n \"article-newspaper\": \"Newspaper article\",\n book: \"Book\",\n chapter: \"Book chapter\",\n \"paper-conference\": \"Conference paper\",\n thesis: \"Thesis\",\n report: \"Report\",\n webpage: \"Web page\",\n };\n return typeMap[type] ?? type;\n}\n\n/\n Convert CslItem to Choice for SearchableMultiSelect\n /\nexport function toChoice(item: CslItem): Choice<CslItem> {\n const authors = formatAuthors(item.author);\n const year = extractYear(item);\n const identifiers = formatIdentifiers(item);\n const itemType = formatType(item.type);\n\n // Build meta line: Year · Type · Identifiers\n const metaParts: string[] = [];\n if (year) metaParts.push(String(year));\n metaParts.push(itemType);\n if (identifiers) metaParts.push(identifiers);\n\n const updatedDate = extractUpdatedDate(item);\n const createdDate = extractCreatedDate(item);\n const publishedDate = extractPublishedDate(item);\n\n // Prepend resource indicators to meta if present\n const indicators = buildResourceIndicators(item);\n const metaStr = metaParts.join(\" · \");\n const meta = indicators ? `${indicators} ${metaStr}` : metaStr;\n\n return {\n id: item.id,\n title: item.title ?? \"(No title)\",\n subtitle: authors \|\| \"(No authors)\",\n meta,\n value: item,\n ...(updatedDate && { updatedDate }),\n ...(createdDate && { createdDate }),\n ...(publishedDate && { publishedDate }),\n };\n}\n\n/\n Run the search flow (search → action → style if needed)\n \n This is the main entry point for the `search -t` command.\n /\nexport async function runSearchFlow(\n allReferences: CslItem[],\n searchFn: SearchFunction,\n config: SearchFlowConfig\n): Promise<ActionMenuResult> {\n // Convert references to choices and build lookup map\n const choices = allReferences.map(toChoice);\n const choiceMap = new Map(choices.map((c) => [c.id, c]));\n\n // Calculate effective visible count\n const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n // Create filter function using the provided search function\n const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n if (!query.trim()) return choices;\n\n const results = searchFn(query);\n return results.flatMap((r) => {\n const choice = choiceMap.get(r.reference.id);\n return choice ? [choice] : [];\n });\n };\n\n // Default sort option\n const defaultSort: SortOption = \"updated-desc\";\n\n // Create a promise to capture the result\n return new Promise<ActionMenuResult>((resolve) => {\n let flowResult: ActionMenuResult = {\n action: \"cancel\",\n output: \"\",\n cancelled: true,\n };\n\n const handleComplete = (result: ActionMenuResult): void => {\n flowResult = result;\n };\n\n const handleCancel = (): void => {\n flowResult = {\n action: \"cancel\",\n output: \"\",\n cancelled: true,\n };\n };\n\n // Render the Ink app (single render for entire flow)\n const { waitUntilExit } = render(\n createElement(SearchFlowApp, {\n choices,\n filterFn,\n visibleCount: effectiveLimit,\n defaultSort,\n defaultKeyFormat: config.defaultKeyFormat ?? \"pandoc\",\n defaultStyle: config.defaultStyle ?? \"apa\",\n debounceMs: config.debounceMs,\n onComplete: handleComplete,\n onCancel: handleCancel,\n })\n );\n\n // Wait for the app to exit, then resolve\n waitUntilExit()\n .then(() => {\n restoreStdinAfterInk();\n resolve(flowResult);\n })\n .catch(() => {\n restoreStdinAfterInk();\n resolve({\n action: \"cancel\",\n output: \"\",\n cancelled: true,\n });\n });\n });\n}\n","/\n CiteFlowApp - Single App for cite command flow\n \n Implements the Single App Pattern (ADR-015) for the cite command.\n * Manages state transitions: reference selection → style selection → exiting\n /\n\nimport { Box, useApp } from \"ink\";\nimport type React from \"react\";\nimport { createElement, useEffect, useState } from \"react\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport { SearchableMultiSelect } from \"../components/SearchableMultiSelect.js\";\nimport { Select, type SelectOption } from \"../components/Select.js\";\nimport type { Choice, SortOption } from \"../components/index.js\";\n\n// Flow states\ntype FlowState = \"search\" \| \"style\" \| \"exiting\";\n\n/\n Result from the cite flow\n /\nexport interface CiteFlowResult {\n /* Selected reference IDs /\n identifiers: string[];\n /* Selected style (if style selection was shown) /\n style?: string;\n /* Whether the flow was cancelled /\n cancelled: boolean;\n}\n\n/\n Props for CiteFlowApp\n /\nexport interface CiteFlowAppProps {\n /* All reference choices /\n choices: Choice<CslItem>[];\n /* Filter function for search /\n filterFn: (query: string, choices: Choice<CslItem>[]) => Choice<CslItem>[];\n /* Number of visible items /\n visibleCount: number;\n /* Default sort option /\n defaultSort: SortOption;\n /* Style options for style selection /\n styleOptions: SelectOption<string>[];\n /* Whether to show style selection (false if style already specified) /\n showStyleSelect: boolean;\n /* Callback when flow completes /\n onComplete: (result: CiteFlowResult) => void;\n /* Callback when flow is cancelled /\n onCancel: () => void;\n}\n\n/\n CiteFlowApp component\n \n Single Ink app that handles the entire cite flow:\n * 1. Reference selection (SearchableMultiSelect)\n * 2. Style selection (Select) - optional\n * 3. Exit\n /\nexport function CiteFlowApp({\n choices,\n filterFn,\n visibleCount,\n defaultSort,\n styleOptions,\n showStyleSelect,\n onComplete,\n onCancel,\n}: CiteFlowAppProps): React.ReactElement {\n const { exit } = useApp();\n const [state, setState] = useState<FlowState>(\"search\");\n const [selectedItems, setSelectedItems] = useState<CslItem[]>([]);\n const [pendingResult, setPendingResult] = useState<CiteFlowResult \| null>(null);\n\n // Exit when entering \"exiting\" state\n useEffect(() => {\n if (state === \"exiting\" && pendingResult) {\n exit();\n if (pendingResult.cancelled) {\n onCancel();\n } else {\n onComplete(pendingResult);\n }\n }\n }, [state, pendingResult, exit, onCancel, onComplete]);\n\n // Transition to exiting state with result\n const exitWith = (result: CiteFlowResult) => {\n setPendingResult(result);\n setState(\"exiting\");\n };\n\n // Handle search submission\n const handleSearchSubmit = (selected: Choice<CslItem>[]) => {\n if (selected.length === 0) {\n exitWith({ identifiers: [], cancelled: true });\n return;\n }\n const items = selected.map((c) => c.value);\n setSelectedItems(items);\n\n if (showStyleSelect) {\n setState(\"style\");\n } else {\n // No style selection needed, complete immediately\n exitWith({\n identifiers: items.map((item) => item.id),\n cancelled: false,\n });\n }\n };\n\n // Handle search cancel\n const handleSearchCancel = () => {\n exitWith({ identifiers: [], cancelled: true });\n };\n\n // Handle style selection\n const handleStyleSelect = (style: string) => {\n exitWith({\n identifiers: selectedItems.map((item) => item.id),\n style,\n cancelled: false,\n });\n };\n\n // Handle style cancel (go back to search)\n const handleStyleCancel = () => {\n setState(\"search\");\n };\n\n // Render based on current state\n if (state === \"exiting\") {\n return createElement(Box);\n }\n\n if (state === \"search\") {\n return createElement(SearchableMultiSelect<CslItem>, {\n choices,\n filterFn,\n visibleCount,\n onSubmit: handleSearchSubmit,\n onCancel: handleSearchCancel,\n header: \"Select references to cite\",\n placeholder: \"Type to search...\",\n defaultSort,\n });\n }\n\n // state === \"style\"\n const count = selectedItems.length;\n const refWord = count === 1 ? \"reference\" : \"references\";\n return createElement(Select<string>, {\n options: styleOptions,\n message: `Select citation style for ${count} ${refWord}:`,\n onSelect: handleStyleSelect,\n onCancel: handleStyleCancel,\n });\n}\n","/\n Runner for CiteFlowApp\n \n Provides the public API for running the cite flow.\n /\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type { CslItem } from \"../../../core/csl-json/types.js\";\nimport type { SearchResult } from \"../../search/types.js\";\nimport { restoreStdinAfterInk } from \"../alternate-screen.js\";\nimport {\n type Choice,\n type SelectOption,\n type SortOption,\n calculateEffectiveLimit,\n} from \"../components/index.js\";\nimport { formatAuthors } from \"../format.js\";\nimport { CiteFlowApp, type CiteFlowResult } from \"./CiteFlowApp.js\";\n\n/\n Configuration for the cite flow\n /\nexport interface CiteFlowConfig {\n /* Maximum number of results to display /\n limit: number;\n}\n\n/\n Search function type for filtering references\n /\nexport type SearchFunction = (query: string) => SearchResult[];\n\n/\n Extract year from CSL item\n /\nfunction extractYear(item: CslItem): number \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n return firstDatePart[0];\n}\n\n/\n Extract published date from CSL item\n /\nfunction extractPublishedDate(item: CslItem): Date \| undefined {\n const dateParts = item.issued?.[\"date-parts\"];\n if (!dateParts \|\| dateParts.length === 0) return undefined;\n const firstDatePart = dateParts[0];\n if (!firstDatePart \|\| firstDatePart.length === 0) return undefined;\n const [year, month = 1, day = 1] = firstDatePart;\n if (year === undefined) return undefined;\n return new Date(year, month - 1, day);\n}\n\n/\n Extract updated date from CSL item (from custom.timestamp)\n /\nfunction extractUpdatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.timestamp;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Extract created date from CSL item (from custom.created_at)\n /\nfunction extractCreatedDate(item: CslItem): Date \| undefined {\n const dateStr = item.custom?.created_at;\n if (!dateStr \|\| typeof dateStr !== \"string\") return undefined;\n const date = new Date(dateStr);\n return Number.isNaN(date.getTime()) ? undefined : date;\n}\n\n/\n Format identifiers for meta line\n /\nfunction formatIdentifiers(item: CslItem): string {\n const parts: string[] = [];\n if (item.DOI) parts.push(`DOI: ${item.DOI}`);\n if (item.PMID) parts.push(`PMID: ${item.PMID}`);\n if (item.PMCID) parts.push(`PMCID: ${item.PMCID}`);\n if (item.ISBN) parts.push(`ISBN: ${item.ISBN}`);\n return parts.join(\" · \");\n}\n\n/\n Format item type for display\n /\nfunction formatType(type: string): string {\n const typeMap: Record<string, string> = {\n \"article-journal\": \"Journal article\",\n \"article-magazine\": \"Magazine article\",\n \"article-newspaper\": \"Newspaper article\",\n book: \"Book\",\n chapter: \"Book chapter\",\n \"paper-conference\": \"Conference paper\",\n thesis: \"Thesis\",\n report: \"Report\",\n webpage: \"Web page\",\n };\n return typeMap[type] ?? type;\n}\n\n/\n Convert CslItem to Choice for SearchableMultiSelect\n /\nfunction toChoice(item: CslItem): Choice<CslItem> {\n const authors = formatAuthors(item.author);\n const year = extractYear(item);\n const identifiers = formatIdentifiers(item);\n const itemType = formatType(item.type);\n\n // Build meta line: Year · Type · Identifiers\n const metaParts: string[] = [];\n if (year) metaParts.push(String(year));\n metaParts.push(itemType);\n if (identifiers) metaParts.push(identifiers);\n\n const updatedDate = extractUpdatedDate(item);\n const createdDate = extractCreatedDate(item);\n const publishedDate = extractPublishedDate(item);\n\n return {\n id: item.id,\n title: item.title ?? \"(No title)\",\n subtitle: authors \|\| \"(No authors)\",\n meta: metaParts.join(\" · \"),\n value: item,\n ...(updatedDate && { updatedDate }),\n ...(createdDate && { createdDate }),\n ...(publishedDate && { publishedDate }),\n };\n}\n\n/\n Options for running the cite flow\n /\nexport interface RunCiteFlowOptions {\n /* All references available for selection /\n allReferences: CslItem[];\n /* Search function for filtering /\n searchFn: SearchFunction;\n /* Flow configuration /\n config: CiteFlowConfig;\n /* Style options for style selection /\n styleOptions: SelectOption<string>[];\n /* Whether to show style selection /\n showStyleSelect: boolean;\n}\n\n/\n Run the cite flow (reference selection → style selection if needed)\n \n This is the main entry point for interactive cite command.\n */\nexport async function runCiteFlow(options: RunCiteFlowOptions): Promise<CiteFlowResult> {\n const { allReferences, searchFn, config, styleOptions, showStyleSelect } = options;\n\n // Convert references to choices\n const choices = allReferences.map(toChoice);\n\n // Calculate effective visible count\n const effectiveLimit = calculateEffectiveLimit(config.limit);\n\n // Create filter function using the provided search function\n const filterFn = (query: string, choices: Choice<CslItem>[]): Choice<CslItem>[] => {\n if (!query.trim()) return choices;\n\n const results = searchFn(query);\n return results.map((r) => toChoice(r.reference));\n };\n\n // Default sort option\n const defaultSort: SortOption = \"updated-desc\";\n\n // Create a promise to capture the result\n return new Promise<CiteFlowResult>((resolve) => {\n let flowResult: CiteFlowResult = {\n identifiers: [],\n cancelled: true,\n };\n\n const handleComplete = (result: CiteFlowResult): void => {\n flowResult = result;\n };\n\n const handleCancel = (): void => {\n flowResult = {\n identifiers: [],\n cancelled: true,\n };\n };\n\n // Render the Ink app (single render for entire flow)\n const { waitUntilExit } = render(\n createElement(CiteFlowApp, {\n choices,\n filterFn,\n visibleCount: effectiveLimit,\n defaultSort,\n styleOptions,\n showStyleSelect,\n onComplete: handleComplete,\n onCancel: handleCancel,\n })\n );\n\n // Wait for the app to exit, then resolve\n waitUntilExit()\n .then(() => {\n restoreStdinAfterInk();\n resolve(flowResult);\n })\n .catch(() => {\n restoreStdinAfterInk();\n resolve({\n identifiers: [],\n cancelled: true,\n });\n });\n 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package/dist/chunks/{index-CXZ_Trjb.js → index-BVDVqLTl.js} RENAMED Viewed

@@ -1,5 +1,5 @@
-import { a } from "./index-DFhoO9RA.js";
-import { d, g, l, o, s } from "./index-DxjW_BKA.js";
+import { a } from "./index-eZatWPDi.js";
+import { d, g, l, o, s } from "./index-BrETQT0g.js";
 export {
   a as addAttachment,
   d as detachAttachment,
@@ -8,4 +8,4 @@ export {
   o as openAttachment,
   s as syncAttachments
 };
-//# sourceMappingURL=index-CXZ_Trjb.js.map
+//# sourceMappingURL=index-BVDVqLTl.js.map

package/dist/chunks/index-BVDVqLTl.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"index-BVDVqLTl.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;"}

package/dist/chunks/{index-DxjW_BKA.js → index-BrETQT0g.js} RENAMED Viewed

@@ -1,13 +1,13 @@
-import { Command } from "commander";
+import { Command, Option } from "commander";
 import { i as isEqual, M as MANAGED_CUSTOM_FIELDS, w as writeFileAtomic, L as Library, h as CslItemSchema, p as pickDefined, a as sortOrderSchema, z as paginationOptionsSchema, F as FileWatcher, b as sortFieldSchema, y as searchSortFieldSchema } from "./file-watcher-Dyns9dxx.js";
 import * as fs from "node:fs";
 import { promises, readFileSync, existsSync, mkdirSync, writeFileSync } from "node:fs";
 import * as os from "node:os";
 import * as path from "node:path";
 import path__default, { join, basename, dirname } from "node:path";
-import { n as normalizePathForOutput, d as deleteDirectoryIfEmpty, p as parseFilename, i as isReservedRole, e as ensureDirectory, a as addAttachment, R as RESERVED_ROLES, g as generateFilename, b as findFulltextFiles, c as findFulltextFile, h as extensionToFormat, j as fulltextAttach, k as fulltextGet, l as fulltextDiscover, m as fulltextFetch, o as fulltextConvert, q as getExtension, B as BUILTIN_STYLES, r as getFulltextAttachmentTypes, s as startServerWithFileWatcher } from "./index-DFhoO9RA.js";
+import { n as normalizePathForOutput, d as deleteDirectoryIfEmpty, p as parseFilename, i as isReservedRole, e as ensureDirectory, a as addAttachment, R as RESERVED_ROLES, g as generateFilename, b as findFulltextFiles, c as findFulltextFile, h as extensionToFormat, j as fulltextAttach, k as fulltextGet, l as fulltextDiscover, m as fulltextFetch, o as fulltextConvert, q as getExtension, r as getDefaultExportFromCjs, B as BUILTIN_STYLES, s as getFulltextAttachmentTypes, t as startServerWithFileWatcher } from "./index-eZatWPDi.js";
 import { readFile, unlink, stat, readdir, rename } from "node:fs/promises";
-import { o as openWithSystemApp, l as loadConfig, e as getDefaultCurrentDirConfigFilename, h as getDefaultUserConfigPath } from "./loader-BZgpKsTG.js";
+import { o as openWithSystemApp, l as loadConfig, e as getDefaultCurrentDirConfigFilename, h as getDefaultUserConfigPath } from "./loader-CzviN_sy.js";
 import { spawn, spawnSync } from "node:child_process";
 import process$1, { stdin, stdout } from "node:process";
 import * as readline from "node:readline";
@@ -19,7 +19,7 @@ import "@citation-js/plugin-csl";
 import { ZodOptional as ZodOptional$2, z } from "zod";
 import { serve } from "@hono/node-server";
 const name = "@ncukondo/reference-manager";
-const version$1 = "0.22.2";
+const version$1 = "0.23.0";
 const description$1 = "A local reference management tool using CSL-JSON as the single source of truth";
 const packageJson = {
   name,
@@ -902,15 +902,15 @@ class OperationsLibrary {
   }
   // High-level operations
   async search(options) {
-    const { searchReferences } = await import("./index-DFhoO9RA.js").then((n) => n.z);
+    const { searchReferences } = await import("./index-eZatWPDi.js").then((n) => n.A);
     return searchReferences(this.library, options);
   }
   async list(options) {
-    const { listReferences } = await import("./index-DFhoO9RA.js").then((n) => n.y);
+    const { listReferences } = await import("./index-eZatWPDi.js").then((n) => n.z);
     return listReferences(this.library, options ?? {});
   }
   async cite(options) {
-    const { citeReferences } = await import("./index-DFhoO9RA.js").then((n) => n.x);
+    const { citeReferences } = await import("./index-eZatWPDi.js").then((n) => n.y);
     const defaultStyle = options.defaultStyle ?? this.citationConfig?.defaultStyle;
     const cslDirectory = options.cslDirectory ?? this.citationConfig?.cslDirectory;
     const mergedOptions = {
@@ -921,32 +921,32 @@ class OperationsLibrary {
     return citeReferences(this.library, mergedOptions);
   }
   async import(inputs, options) {
-    const { addReferences } = await import("./index-DFhoO9RA.js").then((n) => n.w);
+    const { addReferences } = await import("./index-eZatWPDi.js").then((n) => n.x);
     return addReferences(inputs, this.library, options ?? {});
   }
   // Attachment operations
   async attachAdd(options) {
-    const { addAttachment: addAttachment2 } = await import("./index-CXZ_Trjb.js");
+    const { addAttachment: addAttachment2 } = await import("./index-BVDVqLTl.js");
     return addAttachment2(this.library, options);
   }
   async attachList(options) {
-    const { listAttachments: listAttachments2 } = await import("./index-CXZ_Trjb.js");
+    const { listAttachments: listAttachments2 } = await import("./index-BVDVqLTl.js");
     return listAttachments2(this.library, options);
   }
   async attachGet(options) {
-    const { getAttachment: getAttachment2 } = await import("./index-CXZ_Trjb.js");
+    const { getAttachment: getAttachment2 } = await import("./index-BVDVqLTl.js");
     return getAttachment2(this.library, options);
   }
   async attachDetach(options) {
-    const { detachAttachment: detachAttachment2 } = await import("./index-CXZ_Trjb.js");
+    const { detachAttachment: detachAttachment2 } = await import("./index-BVDVqLTl.js");
     return detachAttachment2(this.library, options);
   }
   async attachSync(options) {
-    const { syncAttachments: syncAttachments2 } = await import("./index-CXZ_Trjb.js");
+    const { syncAttachments: syncAttachments2 } = await import("./index-BVDVqLTl.js");
     return syncAttachments2(this.library, options);
   }
   async attachOpen(options) {
-    const { openAttachment: openAttachment2 } = await import("./index-CXZ_Trjb.js");
+    const { openAttachment: openAttachment2 } = await import("./index-BVDVqLTl.js");
     return openAttachment2(this.library, options);
   }
 }
@@ -1790,7 +1790,7 @@ function getAttachExitCode(result) {
 }
 async function executeInteractiveSelect$2(context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { selectReferencesOrExit } = await import("./reference-select-Cpq_Q4f6.js");
+  const { selectReferencesOrExit } = await import("./reference-select-CogjIATu.js");
   const allReferences = await context.library.getAll();
   const identifiers = await withAlternateScreen2(
     () => selectReferencesOrExit(allReferences, { multiSelect: false }, config2.cli.tui)
@@ -2338,8 +2338,8 @@ function getCiteExitCode(result) {
 }
 async function executeInteractiveCite(options, context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { runCiteFlow } = await import("./index-B7NyGOm6.js");
-  const { buildStyleChoices, listCustomStyles } = await import("./style-select-CQIqnmWS.js");
+  const { runCiteFlow } = await import("./index-BSWbcT3c.js");
+  const { buildStyleChoices, listCustomStyles } = await import("./style-select-CJzZczSq.js");
   const { search } = await import("./file-watcher-Dyns9dxx.js").then((n) => n.B);
   const { tokenize } = await import("./file-watcher-Dyns9dxx.js").then((n) => n.A);
   const { checkTTY } = await import("./tty-BMyaEOhX.js");
@@ -2423,10 +2423,13 @@ const ENV_OVERRIDE_MAP = {
   REFERENCE_MANAGER_CLI_DEFAULT_LIMIT: "cli.default_limit",
   REFERENCE_MANAGER_MCP_DEFAULT_LIMIT: "mcp.default_limit",
   REFERENCE_MANAGER_CLIPBOARD_AUTO_COPY: "cli.tui.clipboard_auto_copy",
+  REFERENCE_MANAGER_FULLTEXT_PREFERRED_TYPE: "fulltext.preferred_type",
   PUBMED_EMAIL: "pubmed.email",
   PUBMED_API_KEY: "pubmed.api_key",
   UNPAYWALL_EMAIL: "fulltext.sources.unpaywall_email",
-  CORE_API_KEY: "fulltext.sources.core_api_key"
+  CORE_API_KEY: "fulltext.sources.core_api_key",
+  NCBI_EMAIL: "fulltext.sources.ncbi_email",
+  NCBI_TOOL: "fulltext.sources.ncbi_tool"
 };
 const KEY_TO_ENV_MAP = Object.fromEntries(
   Object.entries(ENV_OVERRIDE_MAP).map(([envVar, configKey]) => [configKey, envVar])
@@ -2496,6 +2499,13 @@ const CONFIG_KEY_REGISTRY = [
     type: "string[]",
     description: "Fulltext source priority order"
   },
+  {
+    key: "fulltext.preferred_type",
+    type: "enum",
+    description: "Preferred fulltext type for open/get",
+    enumValues: ["pdf", "markdown"],
+    optional: true
+  },
   {
     key: "fulltext.auto_fetch_on_add",
     type: "boolean",
@@ -2513,6 +2523,18 @@ const CONFIG_KEY_REGISTRY = [
     description: "API key for CORE",
     optional: true
   },
+  {
+    key: "fulltext.sources.ncbi_email",
+    type: "string",
+    description: "Email for NCBI E-utilities",
+    optional: true
+  },
+  {
+    key: "fulltext.sources.ncbi_tool",
+    type: "string",
+    description: "Tool name for NCBI E-utilities",
+    optional: true
+  },
   // attachments section
   { key: "attachments.directory", type: "string", description: "Attachments storage directory" },
   // cli section
@@ -3468,9 +3490,6 @@ const alternateScreen = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.def
   restoreStdinAfterInk,
   withAlternateScreen
 }, Symbol.toStringTag, { value: "Module" }));
-function getDefaultExportFromCjs(x) {
-  return x && x.__esModule && Object.prototype.hasOwnProperty.call(x, "default") ? x["default"] : x;
-}
 var jsxRuntime = { exports: {} };
 var reactJsxRuntime_production = {};
 /**
@@ -6919,7 +6938,7 @@ function formatEditOutput(result) {
 }
 async function executeInteractiveEdit(options, context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { selectReferencesOrExit } = await import("./reference-select-Cpq_Q4f6.js");
+  const { selectReferencesOrExit } = await import("./reference-select-CogjIATu.js");
   const allReferences = await context.library.getAll();
   const identifiers = await withAlternateScreen2(
     () => selectReferencesOrExit(allReferences, { multiSelect: true }, config2.cli.tui)
@@ -10247,23 +10266,25 @@ async function fulltextDetach(library, options) {
 function buildFilePath(attachmentsDirectory, directory, filename) {
   return join(attachmentsDirectory, directory, filename);
 }
-function determineTypeToOpen(attachments) {
+function determineTypeToOpen(attachments, preferredType) {
   const files = findFulltextFiles(attachments);
   if (files.length === 0) return void 0;
-  const pdfFile = files.find((f) => f.filename.endsWith(".pdf"));
-  if (pdfFile) return "pdf";
-  const mdFile = files.find((f) => f.filename.endsWith(".md"));
-  if (mdFile) return "markdown";
+  const hasPdf = files.some((f) => f.filename.endsWith(".pdf"));
+  const hasMd = files.some((f) => f.filename.endsWith(".md"));
+  if (preferredType === "markdown" && hasMd) return "markdown";
+  if (preferredType === "pdf" && hasPdf) return "pdf";
+  if (hasPdf) return "pdf";
+  if (hasMd) return "markdown";
   return void 0;
 }
 async function fulltextOpen(library, options) {
-  const { identifier, type: type2, idType = "id", fulltextDirectory } = options;
+  const { identifier, type: type2, preferredType, idType = "id", fulltextDirectory } = options;
   const item = await library.find(identifier, { idType });
   if (!item) {
     return { success: false, error: `Reference not found: ${identifier}` };
   }
   const attachments = item.custom?.attachments;
-  const typeToOpen = type2 ?? determineTypeToOpen(attachments);
+  const typeToOpen = type2 ?? determineTypeToOpen(attachments, preferredType);
   if (!typeToOpen) {
     return { success: false, error: `No fulltext attached to reference: ${identifier}` };
   }
@@ -10309,6 +10330,7 @@ async function executeFulltextGet(options, context) {
   const operationOptions = {
     identifier: options.identifier,
     type: options.type,
+    preferredType: options.preferredType,
     stdout: options.stdout,
     idType: options.idType,
     fulltextDirectory: options.fulltextDirectory
@@ -10329,6 +10351,7 @@ async function executeFulltextOpen(options, context) {
   const operationOptions = {
     identifier: options.identifier,
     type: options.type,
+    preferredType: options.preferredType,
     idType: options.idType,
     fulltextDirectory: options.fulltextDirectory
   };
@@ -10456,7 +10479,7 @@ function getFulltextExitCode(result) {
 }
 async function executeInteractiveSelect$1(context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { selectReferencesOrExit } = await import("./reference-select-Cpq_Q4f6.js");
+  const { selectReferencesOrExit } = await import("./reference-select-CogjIATu.js");
   const allReferences = await context.library.getAll();
   const identifiers = await withAlternateScreen2(
     () => selectReferencesOrExit(allReferences, { multiSelect: false }, config2.cli.tui)
@@ -10552,13 +10575,15 @@ async function handleFulltextGetAction(identifierArg, options, globalOpts) {
       }
       identifier = stdinId;
     }
+    const preferValue = options.prefer ?? config2.fulltext.preferredType;
     const getOptions = {
       identifier,
       fulltextDirectory: config2.attachments.directory,
       ...options.pdf && { type: "pdf" },
       ...options.markdown && { type: "markdown" },
       ...options.stdout && { stdout: options.stdout },
-      ...options.uuid && { idType: "uuid" }
+      ...options.uuid && { idType: "uuid" },
+      ...preferValue && { preferredType: preferValue }
     };
     const result = await executeFulltextGet(getOptions, context);
     outputFulltextGetResult(result, Boolean(options.stdout));
@@ -10629,12 +10654,14 @@ async function handleFulltextOpenAction(identifierArg, options, globalOpts) {
       }
       identifier = stdinId;
     }
+    const preferValue = options.prefer ?? config2.fulltext.preferredType;
     const openOptions = {
       identifier,
       fulltextDirectory: config2.attachments.directory,
       ...options.pdf && { type: "pdf" },
       ...options.markdown && { type: "markdown" },
-      ...options.uuid && { idType: "uuid" }
+      ...options.uuid && { idType: "uuid" },
+      ...preferValue && { preferredType: preferValue }
     };
     const result = await executeFulltextOpen(openOptions, context);
     const output = formatFulltextOpenOutput(result);
@@ -31377,9 +31404,11 @@ function registerFulltextGetTool(server, getLibraryOperations, getConfig) {
     async (args) => {
       const libraryOps = getLibraryOperations();
       const config2 = getConfig();
+      const preferredType = config2.fulltext?.preferredType;
       const pathResult = await fulltextGet(libraryOps, {
         identifier: args.id,
-        fulltextDirectory: config2.attachments.directory
+        fulltextDirectory: config2.attachments.directory,
+        ...preferredType && { preferredType }
       });
       if (!pathResult.success) {
         return {
@@ -31493,7 +31522,7 @@ function registerFulltextFetchTool(server, getLibraryOperations, getConfig) {
   server.registerTool(
     "fulltext_fetch",
     {
-      description: "Download and attach Open Access full-text for a reference. Automatically discovers OA sources, downloads PDF/XML, converts PMC XML to Markdown, and attaches files.",
+      description: "Download and attach Open Access full-text for a reference. Automatically discovers OA sources, downloads PDF/XML/HTML, converts PMC XML and arXiv HTML to Markdown, and attaches files.",
       inputSchema: {
         id: z.string().describe("Reference ID"),
         source: z.enum(["pmc", "arxiv", "unpaywall", "core"]).optional().describe("Preferred source (optional)"),
@@ -31750,7 +31779,7 @@ async function mcpStart(options) {
 async function executeRemove(options, context) {
   const { identifier, idType = "id", fulltextDirectory, deleteFulltext = false } = options;
   if (context.mode === "local" && deleteFulltext && fulltextDirectory) {
-    const { removeReference } = await import("./index-DFhoO9RA.js").then((n) => n.v);
+    const { removeReference } = await import("./index-eZatWPDi.js").then((n) => n.w);
     return removeReference(context.library, {
       identifier,
       idType,
@@ -31805,7 +31834,7 @@ Continue?`;
 }
 async function executeInteractiveRemove(context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { selectReferenceItemsOrExit } = await import("./reference-select-Cpq_Q4f6.js");
+  const { selectReferenceItemsOrExit } = await import("./reference-select-CogjIATu.js");
   const allReferences = await context.library.getAll();
   const selectedItems = await withAlternateScreen2(
     () => selectReferenceItemsOrExit(allReferences, { multiSelect: false }, config2.cli.tui)
@@ -32030,7 +32059,7 @@ async function executeInteractiveSearch(options, context, config2) {
   validateInteractiveOptions(options);
   const { checkTTY } = await import("./tty-BMyaEOhX.js");
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { runSearchFlow } = await import("./index-B7NyGOm6.js");
+  const { runSearchFlow } = await import("./index-BSWbcT3c.js");
   const { search } = await import("./file-watcher-Dyns9dxx.js").then((n) => n.B);
   const { tokenize } = await import("./file-watcher-Dyns9dxx.js").then((n) => n.A);
   checkTTY();
@@ -32049,7 +32078,7 @@ async function executeInteractiveSearch(options, context, config2) {
     })
   );
   if (result.selectedItems && !result.cancelled) {
-    const { isSideEffectAction } = await import("./action-menu-R-QKMCZJ.js");
+    const { isSideEffectAction } = await import("./action-menu-C0-X1ndf.js");
     if (isSideEffectAction(result.action)) {
       await executeSideEffectAction(result.action, result.selectedItems, context, config2);
       return { output: "", cancelled: false, action: result.action };
@@ -32065,7 +32094,7 @@ async function executeSideEffectAction(action, items2, context, config2) {
   switch (action) {
     case "open-url": {
       const { resolveDefaultUrl: resolveDefaultUrl2 } = await Promise.resolve().then(() => url);
-      const { openWithSystemApp: openWithSystemApp2 } = await import("./loader-BZgpKsTG.js").then((n) => n.j);
+      const { openWithSystemApp: openWithSystemApp2 } = await import("./loader-CzviN_sy.js").then((n) => n.j);
       const item = items2[0];
       if (!item) return;
       const url$1 = resolveDefaultUrl2(item);
@@ -32452,7 +32481,7 @@ function formatUpdateOutput(result, identifier) {
 }
 async function executeInteractiveUpdate(context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { selectReferencesOrExit } = await import("./reference-select-Cpq_Q4f6.js");
+  const { selectReferencesOrExit } = await import("./reference-select-CogjIATu.js");
   const allReferences = await context.library.getAll();
   const identifiers = await withAlternateScreen2(
     () => selectReferencesOrExit(allReferences, { multiSelect: false }, config2.cli.tui)
@@ -32747,7 +32776,7 @@ function getUrlExitCode(result) {
 }
 async function executeInteractiveSelect(context, config2) {
   const { withAlternateScreen: withAlternateScreen2 } = await Promise.resolve().then(() => alternateScreen);
-  const { selectReferencesOrExit } = await import("./reference-select-Cpq_Q4f6.js");
+  const { selectReferencesOrExit } = await import("./reference-select-CogjIATu.js");
   const allReferences = await context.library.getAll();
   const identifiers = await withAlternateScreen2(
     () => selectReferencesOrExit(allReferences, { multiSelect: false }, config2.cli.tui)
@@ -33250,7 +33279,7 @@ function shouldAutoFetch(cliFlag, configEnabled) {
   return configEnabled;
 }
 async function performAutoFetch(addedItems, context, config2) {
-  const { fulltextFetch: fulltextFetch2 } = await import("./index-DFhoO9RA.js").then((n) => n.u);
+  const { fulltextFetch: fulltextFetch2 } = await import("./index-eZatWPDi.js").then((n) => n.v);
   const fetchResults = await autoFetchFulltext(addedItems, context, {
     fulltextConfig: config2.fulltext,
     fulltextDirectory: config2.attachments.directory,
@@ -33471,13 +33500,17 @@ function registerFulltextCommand(program) {
   fulltextCmd.command("attach").description("Attach a full-text file to a reference").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").argument("[file-path]", "Path to the file to attach").option("--pdf [path]", "Attach as PDF (path optional if provided as argument)").option("--markdown [path]", "Attach as Markdown (path optional if provided as argument)").option("--move", "Move file instead of copy").option("-f, --force", "Overwrite existing attachment").option("--uuid", "Interpret identifier as UUID").action(async (identifier, filePath, options) => {
     await handleFulltextAttachAction(identifier, filePath, options, program.opts());
   });
-  fulltextCmd.command("get").description("Get full-text file path or content").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").option("--pdf", "Get PDF file only").option("--markdown", "Get Markdown file only").option("--stdout", "Output file content to stdout").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
+  fulltextCmd.command("get").description("Get full-text file path or content").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").option("--pdf", "Get PDF file only").option("--markdown", "Get Markdown file only").addOption(
+    new Option("--prefer <type>", "Preferred fulltext type").choices(["pdf", "markdown"])
+  ).option("--stdout", "Output file content to stdout").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
     await handleFulltextGetAction(identifier, options, program.opts());
   });
   fulltextCmd.command("detach").description("Detach full-text file from a reference").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").option("--pdf", "Detach PDF only").option("--markdown", "Detach Markdown only").option("--remove-files", "Also delete the file from disk").option("-f, --force", "Skip confirmation for file removal").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
     await handleFulltextDetachAction(identifier, options, program.opts());
   });
-  fulltextCmd.command("open").description("Open full-text file with system default application").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").option("--pdf", "Open PDF file").option("--markdown", "Open Markdown file").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
+  fulltextCmd.command("open").description("Open full-text file with system default application").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").option("--pdf", "Open PDF file").option("--markdown", "Open Markdown file").addOption(
+    new Option("--prefer <type>", "Preferred fulltext type").choices(["pdf", "markdown"])
+  ).option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
     await handleFulltextOpenAction(identifier, options, program.opts());
   });
   fulltextCmd.command("discover").description("Check OA (Open Access) availability for a reference").argument("[identifier]", "Citation key or UUID (interactive selection if omitted)").option("--uuid", "Interpret identifier as UUID").action(async (identifier, options) => {
@@ -33525,4 +33558,4 @@ export {
   restoreStdinAfterInk as r,
   syncAttachments as s
 };
-//# sourceMappingURL=index-DxjW_BKA.js.map
+//# sourceMappingURL=index-BrETQT0g.js.map