@ncukondo/reference-manager 0.17.0 → 0.18.0

package/README.md

@@ -582,9 +582,9 @@ log_level = "info"
 max_generations = 50
 max_age_days = 365
 
-[fulltext]
-# Override fulltext directory (defaults to {data}/fulltext)
-directory = "~/references/fulltext"
+[attachments]
+# Override attachments directory (defaults to {data}/attachments)
+directory = "~/references/attachments"
 
 [server]
 auto_start = true
@@ -633,7 +633,7 @@ ref config edit --local           # Edit project-local config
 - `server.*` — HTTP server settings
 - `citation.*` — Citation defaults (style, locale, format)
 - `pubmed.*` — PubMed API credentials
-- `fulltext.*` — Fulltext storage
+- `attachments.*` — Attachments storage
 - `cli.*` — CLI behavior (limits, sorting, TUI mode)
 - `mcp.*` — MCP server settings
 

package/dist/chunks/action-menu-D8gSe1YM.js

@@ -0,0 +1,87 @@
+import "ink";
+import "react";
+import { b as stringify, f as formatBibtex } from "./index-BPhIwqHO.js";
+import { f as formatBibliographyCSL } from "./index-B4gr0P83.js";
+const SIDE_EFFECT_ACTIONS = /* @__PURE__ */ new Set([
+  "open-url",
+  "open-fulltext",
+  "manage-attachments",
+  "edit",
+  "remove"
+]);
+function isSideEffectAction(action) {
+  return SIDE_EFFECT_ACTIONS.has(action);
+}
+function getActionChoices(count, config = {}) {
+  const { defaultKeyFormat = "pandoc" } = config;
+  const isSingle = count === 1;
+  const formatLabel = defaultKeyFormat === "latex" ? "LaTeX" : "Pandoc";
+  const keyLabel = isSingle ? `Citation key (${formatLabel})` : `Citation keys (${formatLabel})`;
+  const choices = [
+    { label: keyLabel, value: "key-default" },
+    { label: "Generate citation", value: "cite-default" },
+    { label: "Generate citation (choose style)", value: "cite-choose" }
+  ];
+  if (isSingle) {
+    choices.push(
+      { label: "Open URL", value: "open-url" },
+      { label: "Open fulltext", value: "open-fulltext" },
+      { label: "Manage attachments", value: "manage-attachments" }
+    );
+  }
+  choices.push(
+    { label: isSingle ? "Edit reference" : "Edit references", value: "edit" },
+    { label: "Output (choose format)", value: "output-format" },
+    { label: "Remove", value: "remove" },
+    { label: "Cancel", value: "cancel" }
+  );
+  return choices;
+}
+getActionChoices(1);
+const OUTPUT_FORMAT_CHOICES = [
+  { label: "IDs (citation keys)", value: "output-ids" },
+  { label: "CSL-JSON", value: "output-csl-json" },
+  { label: "BibTeX", value: "output-bibtex" },
+  { label: "YAML", value: "output-yaml" },
+  { label: "Cancel", value: "cancel" }
+];
+const STYLE_CHOICES = [
+  { label: "APA", value: "apa" },
+  { label: "Vancouver", value: "vancouver" },
+  { label: "Harvard", value: "harvard" }
+];
+function generateOutput(action, items, config = {}) {
+  const { defaultKeyFormat = "pandoc", defaultStyle = "apa" } = config;
+  switch (action) {
+    case "output-ids":
+      return items.map((item) => item.id).join("\n");
+    case "output-csl-json":
+      return JSON.stringify(items, null, 2);
+    case "output-bibtex":
+      return formatBibtex(items);
+    case "output-yaml":
+      return stringify(items).trimEnd();
+    // cite-default uses config.defaultStyle; cite-choose has its style
+    // overridden by the caller (processAction/SearchFlowApp) before reaching here.
+    case "cite-default":
+    case "cite-choose":
+      return formatBibliographyCSL(items, { style: defaultStyle });
+    case "key-default":
+      if (defaultKeyFormat === "latex") {
+        return `\\cite{${items.map((i) => i.id).join(",")}}`;
+      }
+      return items.map((i) => `@${i.id}`).join("; ");
+    case "cancel":
+      return "";
+    default:
+      return "";
+  }
+}
+export {
+  OUTPUT_FORMAT_CHOICES,
+  STYLE_CHOICES,
+  generateOutput,
+  getActionChoices,
+  isSideEffectAction
+};
+//# sourceMappingURL=action-menu-D8gSe1YM.js.map

package/dist/chunks/action-menu-D8gSe1YM.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"action-menu-D8gSe1YM.js","sources":["../../src/features/interactive/action-menu.ts"],"sourcesContent":["/**\n * Action menu for interactive search mode.\n * Allows users to perform actions on selected references.\n */\n\nimport { render } from \"ink\";\nimport { createElement } from \"react\";\nimport type React from \"react\";\nimport { stringify as yamlStringify } from \"yaml\";\nimport type { CitationKeyFormat } from \"../../config/schema.js\";\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport { formatBibliographyCSL, formatBibtex } from \"../format/index.js\";\nimport { restoreStdinAfterInk } from \"./alternate-screen.js\";\nimport { Select, type SelectOption } from \"./components/index.js\";\n\n/**\n * Action types available in the action menu.\n */\nexport type ActionType =\n  | \"key-default\"\n  | \"cite-default\"\n  | \"cite-choose\"\n  | \"open-url\"\n  | \"open-fulltext\"\n  | \"manage-attachments\"\n  | \"edit\"\n  | \"output-format\"\n  | \"remove\"\n  | \"cancel\";\n\n/**\n * Output format types for the output format submenu.\n */\nexport type OutputFormatType =\n  | \"output-ids\"\n  | \"output-csl-json\"\n  | \"output-bibtex\"\n  | \"output-yaml\"\n  | \"cancel\";\n\n/**\n * Side-effect action types that perform operations rather than producing stdout output.\n */\nconst SIDE_EFFECT_ACTIONS: ReadonlySet<ActionType> = new Set([\n  \"open-url\",\n  \"open-fulltext\",\n  \"manage-attachments\",\n  \"edit\",\n  \"remove\",\n]);\n\n/**\n * Check if an action is a side-effect action.\n */\nexport function isSideEffectAction(action: ActionType): boolean {\n  return SIDE_EFFECT_ACTIONS.has(action);\n}\n\n/**\n * Result from action menu selection.\n */\nexport interface ActionMenuResult {\n  /** Selected action type */\n  action: ActionType;\n  /** Generated output (empty for cancel and side-effect actions) */\n  output: string;\n  /** Whether the prompt was cancelled */\n  cancelled: boolean;\n  /** Selected items (for side-effect actions) */\n  selectedItems?: CslItem[];\n}\n\n/**\n * Result from style selection prompt.\n */\nexport interface StyleSelectResult {\n  /** Selected style (undefined if cancelled) */\n  style?: string;\n  /** Whether the prompt was cancelled */\n  cancelled: boolean;\n}\n\n/**\n * Config options for action choices.\n */\nexport interface ActionChoicesConfig {\n  defaultKeyFormat?: CitationKeyFormat | undefined;\n}\n\n/**\n * Config options for output generation.\n */\nexport interface GenerateOutputConfig {\n  defaultKeyFormat?: CitationKeyFormat | undefined;\n  defaultStyle?: string | undefined;\n}\n\n/**\n * Generate action choices for the action menu.\n * Returns different choices based on the number of selected entries.\n */\nexport function getActionChoices(\n  count: number,\n  config: ActionChoicesConfig = {}\n): SelectOption<ActionType>[] {\n  const { defaultKeyFormat = \"pandoc\" } = config;\n  const isSingle = count === 1;\n  const formatLabel = defaultKeyFormat === \"latex\" ? \"LaTeX\" : \"Pandoc\";\n\n  const keyLabel = isSingle ? `Citation key (${formatLabel})` : `Citation keys (${formatLabel})`;\n\n  const choices: SelectOption<ActionType>[] = [\n    { label: keyLabel, value: \"key-default\" },\n    { label: \"Generate citation\", value: \"cite-default\" },\n    { label: \"Generate citation (choose style)\", value: \"cite-choose\" },\n  ];\n\n  if (isSingle) {\n    choices.push(\n      { label: \"Open URL\", value: \"open-url\" },\n      { label: \"Open fulltext\", value: \"open-fulltext\" },\n      { label: \"Manage attachments\", value: \"manage-attachments\" }\n    );\n  }\n\n  choices.push(\n    { label: isSingle ? \"Edit reference\" : \"Edit references\", value: \"edit\" },\n    { label: \"Output (choose format)\", value: \"output-format\" },\n    { label: \"Remove\", value: \"remove\" },\n    { label: \"Cancel\", value: \"cancel\" }\n  );\n\n  return choices;\n}\n\n/**\n * Available action choices for the action menu (default, single entry).\n * @deprecated Use getActionChoices(count, config) for dynamic choices.\n */\nexport const ACTION_CHOICES: SelectOption<ActionType>[] = getActionChoices(1);\n\n/**\n * Output format choices for the output format submenu.\n */\nexport const OUTPUT_FORMAT_CHOICES: SelectOption<OutputFormatType>[] = [\n  { label: \"IDs (citation keys)\", value: \"output-ids\" },\n  { label: \"CSL-JSON\", value: \"output-csl-json\" },\n  { label: \"BibTeX\", value: \"output-bibtex\" },\n  { label: \"YAML\", value: \"output-yaml\" },\n  { label: \"Cancel\", value: \"cancel\" },\n];\n\n/**\n * Available style choices for citation style selection.\n */\nexport const STYLE_CHOICES: SelectOption<string>[] = [\n  { label: \"APA\", value: \"apa\" },\n  { label: \"Vancouver\", value: \"vancouver\" },\n  { label: \"Harvard\", value: \"harvard\" },\n];\n\n/**\n * Props for the ActionMenuApp component\n */\ninterface ActionMenuAppProps {\n  message: string;\n  options: SelectOption<ActionType>[];\n  onSelect: (value: ActionType) => void;\n  onCancel: () => void;\n}\n\n/**\n * ActionMenuApp component - wraps Select for action menu\n */\nfunction ActionMenuApp({\n  message,\n  options,\n  onSelect,\n  onCancel,\n}: ActionMenuAppProps): React.ReactElement {\n  return createElement(Select<ActionType>, {\n    options,\n    message,\n    onSelect,\n    onCancel,\n  });\n}\n\n/**\n * Props for the StyleSelectApp component\n */\ninterface StyleSelectAppProps {\n  options: SelectOption<string>[];\n  onSelect: (value: string) => void;\n  onCancel: () => void;\n}\n\n/**\n * StyleSelectApp component - wraps Select for style selection\n */\nfunction StyleSelectApp({ options, onSelect, onCancel }: StyleSelectAppProps): React.ReactElement {\n  return createElement(Select<string>, {\n    options,\n    message: \"Select citation style:\",\n    onSelect,\n    onCancel,\n  });\n}\n\n/**\n * Generate output for the given action and items.\n */\nexport function generateOutput(\n  action: ActionType | OutputFormatType,\n  items: CslItem[],\n  config: GenerateOutputConfig = {}\n): string {\n  const { defaultKeyFormat = \"pandoc\", defaultStyle = \"apa\" } = config;\n\n  switch (action) {\n    case \"output-ids\":\n      return items.map((item) => item.id).join(\"\\n\");\n\n    case \"output-csl-json\":\n      return JSON.stringify(items, null, 2);\n\n    case \"output-bibtex\":\n      return formatBibtex(items);\n\n    case \"output-yaml\":\n      return yamlStringify(items).trimEnd();\n\n    // cite-default uses config.defaultStyle; cite-choose has its style\n    // overridden by the caller (processAction/SearchFlowApp) before reaching here.\n    case \"cite-default\":\n    case \"cite-choose\":\n      return formatBibliographyCSL(items, { style: defaultStyle });\n\n    case \"key-default\":\n      if (defaultKeyFormat === \"latex\") {\n        return `\\\\cite{${items.map((i) => i.id).join(\",\")}}`;\n      }\n      return items.map((i) => `@${i.id}`).join(\"; \");\n\n    case \"cancel\":\n      return \"\";\n\n    default:\n      return \"\";\n  }\n}\n\n/**\n * Run the style selection prompt.\n */\nexport async function runStyleSelectPrompt(): Promise<StyleSelectResult> {\n  return new Promise<StyleSelectResult>((resolve) => {\n    let result: StyleSelectResult = { cancelled: true };\n\n    const handleSelect = (value: string): void => {\n      result = {\n        style: value,\n        cancelled: false,\n      };\n    };\n\n    const handleCancel = (): void => {\n      result = {\n        cancelled: true,\n      };\n    };\n\n    // Render the Ink app\n    const { waitUntilExit } = render(\n      createElement(StyleSelectApp, {\n        options: STYLE_CHOICES,\n        onSelect: handleSelect,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, then resolve\n    waitUntilExit()\n      .then(() => {\n        restoreStdinAfterInk();\n        resolve(result);\n      })\n      .catch(() => {\n        restoreStdinAfterInk();\n        resolve({\n          cancelled: true,\n        });\n      });\n  });\n}\n\n/**\n * Process the selected action and generate result.\n */\nasync function processAction(\n  action: ActionType,\n  items: CslItem[],\n  config: GenerateOutputConfig = {}\n): Promise<ActionMenuResult> {\n  // Handle cite-choose: prompt for style first\n  if (action === \"cite-choose\") {\n    const styleResult = await runStyleSelectPrompt();\n    if (styleResult.cancelled) {\n      return {\n        action: \"cancel\",\n        output: \"\",\n        cancelled: true,\n      };\n    }\n    return {\n      action,\n      output: generateOutput(action, items, {\n        ...config,\n        defaultStyle: styleResult.style,\n      }),\n      cancelled: false,\n    };\n  }\n\n  // Handle cancel\n  if (action === \"cancel\") {\n    return {\n      action,\n      output: \"\",\n      cancelled: true,\n    };\n  }\n\n  // Handle side-effect actions\n  if (isSideEffectAction(action)) {\n    return {\n      action,\n      output: \"\",\n      cancelled: false,\n      selectedItems: items,\n    };\n  }\n\n  // Handle other actions\n  return {\n    action,\n    output: generateOutput(action, items, config),\n    cancelled: false,\n  };\n}\n\n/**\n * Run the action menu for selected references.\n *\n * @param items - Selected references\n * @param config - Output generation config\n * @returns Action result with output\n */\nexport async function runActionMenu(\n  items: CslItem[],\n  config: GenerateOutputConfig = {}\n): Promise<ActionMenuResult> {\n  const count = items.length;\n  const refWord = count === 1 ? \"reference\" : \"references\";\n  const message = `Action for ${count} selected ${refWord}:`;\n  const actionChoices = getActionChoices(count, {\n    defaultKeyFormat: config.defaultKeyFormat,\n  });\n\n  return new Promise<ActionMenuResult>((resolve) => {\n    let selectedAction: ActionType | null = null;\n\n    const handleSelect = (action: ActionType): void => {\n      selectedAction = action;\n    };\n\n    const handleCancel = (): void => {\n      selectedAction = null;\n    };\n\n    // Render the Ink app\n    const { waitUntilExit } = render(\n      createElement(ActionMenuApp, {\n        message,\n        options: actionChoices,\n        onSelect: handleSelect,\n        onCancel: handleCancel,\n      })\n    );\n\n    // Wait for the app to exit, then process the action\n    waitUntilExit()\n      .then(async () => {\n        restoreStdinAfterInk();\n\n        if (selectedAction === null) {\n          resolve({\n            action: \"cancel\",\n            output: \"\",\n            cancelled: true,\n          });\n        } else {\n          const result = await processAction(selectedAction, items, config);\n          resolve(result);\n        }\n      })\n      .catch(() => {\n        restoreStdinAfterInk();\n        resolve({\n          action: \"cancel\",\n          output: \"\",\n          cancelled: 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package/dist/chunks/clipboard-KXwFSJ4w.js

@@ -0,0 +1,56 @@
+import { execFile } from "node:child_process";
+import fs__default from "node:fs";
+function isWSL() {
+  if (process.env.WSL_DISTRO_NAME !== void 0) {
+    return true;
+  }
+  try {
+    return fs__default.existsSync("/proc/sys/fs/binfmt_misc/WSLInterop");
+  } catch {
+    return false;
+  }
+}
+function detectClipboardCommand() {
+  if (process.platform === "darwin") {
+    return { command: "pbcopy", args: [] };
+  }
+  if (process.platform === "win32") {
+    return { command: "clip.exe", args: [] };
+  }
+  if (process.platform === "linux") {
+    if (isWSL()) {
+      return { command: "clip.exe", args: [] };
+    }
+    if (process.env.WAYLAND_DISPLAY) {
+      return { command: "wl-copy", args: [] };
+    }
+    if (process.env.DISPLAY) {
+      return { command: "xclip", args: ["-selection", "clipboard"] };
+    }
+  }
+  return null;
+}
+function copyToClipboard(text) {
+  const clipboardCmd = detectClipboardCommand();
+  if (!clipboardCmd) {
+    return Promise.resolve({ success: false, error: "No clipboard command available" });
+  }
+  return new Promise((resolve) => {
+    const child = execFile(clipboardCmd.command, clipboardCmd.args, (error) => {
+      if (error) {
+        resolve({ success: false, error: error.message });
+      } else {
+        resolve({ success: true });
+      }
+    });
+    if (child.stdin) {
+      child.stdin.write(text);
+      child.stdin.end();
+    }
+  });
+}
+export {
+  copyToClipboard,
+  detectClipboardCommand
+};
+//# sourceMappingURL=clipboard-KXwFSJ4w.js.map

package/dist/chunks/clipboard-KXwFSJ4w.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"clipboard-KXwFSJ4w.js","sources":["../../src/utils/clipboard.ts"],"sourcesContent":["import { execFile } from \"node:child_process\";\nimport fs from \"node:fs\";\n\nexport interface ClipboardCommand {\n  command: string;\n  args: string[];\n}\n\nexport interface ClipboardResult {\n  success: boolean;\n  error?: string;\n}\n\n/**\n * Detect if running in Windows Subsystem for Linux (WSL)\n */\nfunction isWSL(): boolean {\n  if (process.env.WSL_DISTRO_NAME !== undefined) {\n    return true;\n  }\n  try {\n    return fs.existsSync(\"/proc/sys/fs/binfmt_misc/WSLInterop\");\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Detect available system clipboard command.\n * Detection order: pbcopy (macOS) → clip.exe (WSL) → wl-copy (Wayland) → xclip (X11)\n */\nexport function detectClipboardCommand(): ClipboardCommand | null {\n  if (process.platform === \"darwin\") {\n    return { command: \"pbcopy\", args: [] };\n  }\n\n  if (process.platform === \"win32\") {\n    return { command: \"clip.exe\", args: [] };\n  }\n\n  if (process.platform === \"linux\") {\n    if (isWSL()) {\n      return { command: \"clip.exe\", args: [] };\n    }\n    if (process.env.WAYLAND_DISPLAY) {\n      return { command: \"wl-copy\", args: [] };\n    }\n    if (process.env.DISPLAY) {\n      return { command: \"xclip\", args: [\"-selection\", \"clipboard\"] };\n    }\n  }\n\n  return null;\n}\n\n/**\n * Copy text to system clipboard.\n * Returns success status and optional error message.\n */\nexport function copyToClipboard(text: string): Promise<ClipboardResult> {\n  const clipboardCmd = detectClipboardCommand();\n  if (!clipboardCmd) {\n    return Promise.resolve({ success: false, error: \"No clipboard command available\" });\n  }\n\n  return new Promise<ClipboardResult>((resolve) => {\n    const child = execFile(clipboardCmd.command, clipboardCmd.args, (error: Error | null) => {\n      if (error) {\n        resolve({ success: false, error: error.message });\n      } else {\n        resolve({ success: true });\n      }\n    });\n\n    if (child.stdin) {\n      child.stdin.write(text);\n      child.stdin.end();\n    }\n  });\n}\n"],"names":["fs"],"mappings":";;AAgBA,SAAS,QAAiB;AACxB,MAAI,QAAQ,IAAI,oBAAoB,QAAW;AAC7C,WAAO;AAAA,EACT;AACA,MAAI;AACF,WAAOA,YAAG,WAAW,qCAAqC;AAAA,EAC5D,QAAQ;AACN,WAAO;AAAA,EACT;AACF;AAMO,SAAS,yBAAkD;AAChE,MAAI,QAAQ,aAAa,UAAU;AACjC,WAAO,EAAE,SAAS,UAAU,MAAM,CAAA,EAAC;AAAA,EACrC;AAEA,MAAI,QAAQ,aAAa,SAAS;AAChC,WAAO,EAAE,SAAS,YAAY,MAAM,CAAA,EAAC;AAAA,EACvC;AAEA,MAAI,QAAQ,aAAa,SAAS;AAChC,QAAI,SAAS;AACX,aAAO,EAAE,SAAS,YAAY,MAAM,CAAA,EAAC;AAAA,IACvC;AACA,QAAI,QAAQ,IAAI,iBAAiB;AAC/B,aAAO,EAAE,SAAS,WAAW,MAAM,CAAA,EAAC;AAAA,IACtC;AACA,QAAI,QAAQ,IAAI,SAAS;AACvB,aAAO,EAAE,SAAS,SAAS,MAAM,CAAC,cAAc,WAAW,EAAA;AAAA,IAC7D;AAAA,EACF;AAEA,SAAO;AACT;AAMO,SAAS,gBAAgB,MAAwC;AACtE,QAAM,eAAe,uBAAA;AACrB,MAAI,CAAC,cAAc;AACjB,WAAO,QAAQ,QAAQ,EAAE,SAAS,OAAO,OAAO,kCAAkC;AAAA,EACpF;AAEA,SAAO,IAAI,QAAyB,CAAC,YAAY;AAC/C,UAAM,QAAQ,SAAS,aAAa,SAAS,aAAa,MAAM,CAAC,UAAwB;AACvF,UAAI,OAAO;AACT,gBAAQ,EAAE,SAAS,OAAO,OAAO,MAAM,SAAS;AAAA,MAClD,OAAO;AACL,gBAAQ,EAAE,SAAS,MAAM;AAAA,MAC3B;AAAA,IACF,CAAC;AAED,QAAI,MAAM,OAAO;AACf,YAAM,MAAM,MAAM,IAAI;AACtB,YAAM,MAAM,IAAA;AAAA,IACd;AAAA,EACF,CAAC;AACH;"}

package/dist/chunks/{format-CduFas9k.js → format-B52BI__9.js}

@@ -1,4 +1,4 @@
-import { j as jsxRuntimeExports } from "./index-CqrsgD_G.js";
+import { j as jsxRuntimeExports } from "./index-BPhIwqHO.js";
 import { useFocus, useStdout, useInput, Box, Text } from "ink";
 import { useState, useMemo, useEffect, useCallback } from "react";
 const ANSI_BACKGROUND_OFFSET = 10;
@@ -931,4 +931,4 @@ export {
   calculateEffectiveLimit as c,
   formatAuthors as f
 };
-//# sourceMappingURL=format-CduFas9k.js.map
+//# sourceMappingURL=format-B52BI__9.js.map