@ncukondo/reference-manager 0.14.1 → 0.15.0

package/dist/chunks/{loader-C1EpnyPm.js → loader-4FFB4igw.js}

@@ -1,16 +1,29 @@
 import { spawn } from "node:child_process";
-import { existsSync, readFileSync } from "node:fs";
+import fs__default, { existsSync, readFileSync } from "node:fs";
 import os__default, { homedir as homedir$1 } from "node:os";
 import path__default, { join } from "node:path";
 import { parse } from "@iarna/toml";
 import process$1 from "node:process";
 import { z } from "zod";
-import { q as sortOrderSchema, u as sortFieldSchema } from "./file-watcher-D2Y-SlcE.js";
-function getOpenerCommand(platform) {
+import { a as sortOrderSchema, b as sortFieldSchema } from "./file-watcher-B_WpVHSV.js";
+function isWSL() {
+  if (process.env.WSL_DISTRO_NAME !== void 0) {
+    return true;
+  }
+  try {
+    return fs__default.existsSync("/proc/sys/fs/binfmt_misc/WSLInterop");
+  } catch {
+    return false;
+  }
+}
+function getOpenerCommand(platform, wsl = isWSL()) {
   switch (platform) {
     case "darwin":
       return ["open"];
     case "linux":
+      if (wsl) {
+        return ["wslview"];
+      }
       return ["xdg-open"];
     case "win32":
       return ["cmd", "/c", "start", ""];
@@ -41,7 +54,7 @@ async function openWithSystemApp(filePath, platform = process.platform) {
   });
 }
 const logLevelSchema = z.enum(["silent", "info", "debug"]);
-const interactiveConfigSchema = z.object({
+const tuiConfigSchema = z.object({
   limit: z.number().int().nonnegative(),
   debounceMs: z.number().int().nonnegative()
 });
@@ -53,7 +66,7 @@ const cliConfigSchema = z.object({
   defaultLimit: z.number().int().nonnegative(),
   defaultSort: sortFieldSchema,
   defaultOrder: sortOrderSchema,
-  interactive: interactiveConfigSchema,
+  tui: tuiConfigSchema,
   edit: editConfigSchema
 });
 const mcpConfigSchema = z.object({
@@ -88,6 +101,9 @@ const pubmedConfigSchema = z.object({
 const fulltextConfigSchema = z.object({
   directory: z.string().min(1)
 });
+const attachmentsConfigSchema = z.object({
+  directory: z.string().min(1)
+});
 const configSchema = z.object({
   library: z.string().min(1),
   logLevel: logLevelSchema,
@@ -97,6 +113,7 @@ const configSchema = z.object({
   citation: citationConfigSchema,
   pubmed: pubmedConfigSchema,
   fulltext: fulltextConfigSchema,
+  attachments: attachmentsConfigSchema,
   cli: cliConfigSchema,
   mcp: mcpConfigSchema
 });
@@ -146,6 +163,9 @@ const partialConfigSchema = z.object({
   fulltext: z.object({
     directory: z.string().min(1).optional()
   }).optional(),
+  attachments: z.object({
+    directory: z.string().min(1).optional()
+  }).optional(),
   cli: z.object({
     defaultLimit: z.number().int().nonnegative().optional(),
     default_limit: z.number().int().nonnegative().optional(),
@@ -153,7 +173,7 @@ const partialConfigSchema = z.object({
     default_sort: sortFieldSchema.optional(),
     defaultOrder: sortOrderSchema.optional(),
     default_order: sortOrderSchema.optional(),
-    interactive: z.object({
+    tui: z.object({
       limit: z.number().int().nonnegative().optional(),
       debounceMs: z.number().int().nonnegative().optional(),
       debounce_ms: z.number().int().nonnegative().optional()
@@ -253,6 +273,7 @@ const sectionNormalizers = {
   citation: normalizeCitationConfig,
   pubmed: normalizePubmedConfig,
   fulltext: normalizeFulltextConfig,
+  attachments: normalizeAttachmentsConfig,
   cli: normalizeCliConfig,
   mcp: normalizeMcpConfig
 };
@@ -286,12 +307,19 @@ function normalizeFulltextConfig(fulltext) {
   }
   return Object.keys(normalized).length > 0 ? normalized : void 0;
 }
-function normalizeInteractiveSection(interactive) {
+function normalizeAttachmentsConfig(attachments) {
   const normalized = {};
-  if (interactive.limit !== void 0) {
-    normalized.limit = interactive.limit;
+  if (attachments.directory !== void 0) {
+    normalized.directory = attachments.directory;
   }
-  const debounceMs = interactive.debounceMs ?? interactive.debounce_ms;
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizeTuiSection(tui) {
+  const normalized = {};
+  if (tui.limit !== void 0) {
+    normalized.limit = tui.limit;
+  }
+  const debounceMs = tui.debounceMs ?? tui.debounce_ms;
   if (debounceMs !== void 0) {
     normalized.debounceMs = debounceMs;
   }
@@ -319,10 +347,10 @@ function normalizeCliConfig(cli) {
   if (defaultOrder !== void 0) {
     normalized.defaultOrder = defaultOrder;
   }
-  if (cli.interactive !== void 0) {
-    const interactive = normalizeInteractiveSection(cli.interactive);
-    if (interactive) {
-      normalized.interactive = interactive;
+  if (cli.tui !== void 0) {
+    const tui = normalizeTuiSection(cli.tui);
+    if (tui) {
+      normalized.tui = tui;
     }
   }
   if (cli.edit !== void 0) {
@@ -415,8 +443,8 @@ function getDefaultCurrentDirConfigFilename() {
 function getDefaultCslDirectory() {
   return join(getPaths().data, "csl");
 }
-function getDefaultFulltextDirectory() {
-  return join(getPaths().data, "fulltext");
+function getDefaultAttachmentsDirectory() {
+  return join(getPaths().data, "attachments");
 }
 const defaultConfig = {
   library: getDefaultLibraryPath(),
@@ -447,13 +475,16 @@ const defaultConfig = {
     apiKey: void 0
   },
   fulltext: {
-    directory: getDefaultFulltextDirectory()
+    directory: getDefaultAttachmentsDirectory()
+  },
+  attachments: {
+    directory: getDefaultAttachmentsDirectory()
   },
   cli: {
     defaultLimit: 0,
     defaultSort: "updated",
     defaultOrder: "desc",
-    interactive: {
+    tui: {
       limit: 20,
       debounceMs: 200
     },
@@ -481,13 +512,13 @@ function loadTOMLFile(path) {
   }
 }
 function mergeCliConfig(base, override) {
-  const { interactive: overrideInteractive, ...overrideCliRest } = override;
-  const { interactive: baseInteractive, ...baseCliRest } = base ?? {};
-  const mergedInteractive = overrideInteractive !== void 0 ? { ...baseInteractive, ...overrideInteractive } : baseInteractive;
+  const { tui: overrideTui, ...overrideCliRest } = override;
+  const { tui: baseTui, ...baseCliRest } = base ?? {};
+  const mergedTui = overrideTui !== void 0 ? { ...baseTui, ...overrideTui } : baseTui;
   return {
     ...baseCliRest,
     ...overrideCliRest,
-    ...mergedInteractive !== void 0 ? { interactive: mergedInteractive } : {}
+    ...mergedTui !== void 0 ? { tui: mergedTui } : {}
   };
 }
 function mergeConfigs(base, ...overrides) {
@@ -547,6 +578,7 @@ function fillDefaults(partial) {
     citation: fillCitationDefaults(partial.citation),
     pubmed: fillPubmedDefaults(partial.pubmed),
     fulltext: fillFulltextDefaults(partial.fulltext),
+    attachments: fillAttachmentsDefaults(partial.attachments),
     cli: fillCliDefaults(partial.cli),
     mcp: fillMcpDefaults(partial.mcp)
   };
@@ -574,12 +606,19 @@ function expandTilde(path) {
   return path;
 }
 function fillFulltextDefaults(partial) {
-  const envDir = process.env.REFERENCE_MANAGER_FULLTEXT_DIR;
+  const envDir = process.env.REFERENCE_MANAGER_ATTACHMENTS_DIR;
   const directory = envDir ?? partial?.directory ?? defaultConfig.fulltext.directory;
   return {
     directory: expandTilde(directory)
   };
 }
+function fillAttachmentsDefaults(partial) {
+  const envDir = process.env.REFERENCE_MANAGER_ATTACHMENTS_DIR;
+  const directory = envDir ?? partial?.directory ?? defaultConfig.attachments.directory;
+  return {
+    directory: expandTilde(directory)
+  };
+}
 function fillCliDefaults(partial) {
   const envLimit = process.env.REFERENCE_MANAGER_CLI_DEFAULT_LIMIT;
   const defaultLimit = envLimit !== void 0 ? Number(envLimit) : partial?.defaultLimit ?? defaultConfig.cli.defaultLimit;
@@ -587,9 +626,9 @@ function fillCliDefaults(partial) {
     defaultLimit,
     defaultSort: partial?.defaultSort ?? defaultConfig.cli.defaultSort,
     defaultOrder: partial?.defaultOrder ?? defaultConfig.cli.defaultOrder,
-    interactive: {
-      limit: partial?.interactive?.limit ?? defaultConfig.cli.interactive.limit,
-      debounceMs: partial?.interactive?.debounceMs ?? defaultConfig.cli.interactive.debounceMs
+    tui: {
+      limit: partial?.tui?.limit ?? defaultConfig.cli.tui.limit,
+      debounceMs: partial?.tui?.debounceMs ?? defaultConfig.cli.tui.debounceMs
     },
     edit: {
       defaultFormat: partial?.edit?.defaultFormat ?? defaultConfig.cli.edit.defaultFormat
@@ -646,4 +685,4 @@ export {
   partialConfigSchema as p,
   watchConfigSchema as w
 };
-//# sourceMappingURL=loader-C1EpnyPm.js.map
+//# sourceMappingURL=loader-4FFB4igw.js.map

package/dist/chunks/loader-4FFB4igw.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"loader-4FFB4igw.js","sources":["../../src/utils/opener.ts","../../src/config/schema.ts","../../node_modules/env-paths/index.js","../../src/config/paths.ts","../../src/config/defaults.ts","../../src/config/loader.ts"],"sourcesContent":["import { type ChildProcess, spawn } from \"node:child_process\";\nimport fs from \"node:fs\";\n\n/**\n * Detect if running in Windows Subsystem for Linux (WSL)\n */\nexport function isWSL(): boolean {\n  // Check for WSL_DISTRO_NAME environment variable\n  if (process.env.WSL_DISTRO_NAME !== undefined) {\n    return true;\n  }\n\n  // Check for WSLInterop file\n  try {\n    return fs.existsSync(\"/proc/sys/fs/binfmt_misc/WSLInterop\");\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Get the system opener command for the specified platform.\n * @param platform - The platform (darwin, linux, win32)\n * @param wsl - Whether running in WSL (defaults to isWSL())\n * @returns The command array to execute\n */\nexport function getOpenerCommand(platform: string, wsl: boolean = isWSL()): string[] {\n  switch (platform) {\n    case \"darwin\":\n      return [\"open\"];\n    case \"linux\":\n      if (wsl) {\n        return [\"wslview\"];\n      }\n      return [\"xdg-open\"];\n    case \"win32\":\n      return [\"cmd\", \"/c\", \"start\", \"\"];\n    default:\n      throw new Error(`Unsupported platform: ${platform}`);\n  }\n}\n\n/**\n * Open a file with the system's default application.\n * @param filePath - The path to the file to open\n * @param platform - The platform (defaults to process.platform)\n */\nexport async function openWithSystemApp(\n  filePath: string,\n  platform: string = process.platform\n): Promise<void> {\n  const commandParts = getOpenerCommand(platform);\n  const [command, ...baseArgs] = commandParts;\n  const args = [...baseArgs, filePath];\n\n  return new Promise((resolve, reject) => {\n    const proc: ChildProcess = spawn(command as string, args, {\n      detached: true,\n      stdio: \"ignore\",\n    });\n\n    proc.on(\"error\", () => {\n      reject(new Error(`Failed to open file: ${filePath}`));\n    });\n\n    proc.on(\"close\", (code: number | null) => {\n      if (code === 0) {\n        resolve();\n      } else {\n        reject(new Error(`Failed to open file: ${filePath}`));\n      }\n    });\n\n    proc.unref();\n  });\n}\n","/**\n * Configuration schema using Zod\n */\n\nimport { z } from \"zod\";\nimport { sortFieldSchema, sortOrderSchema } from \"../features/pagination/types.js\";\n\n/**\n * Log level schema\n */\nexport const logLevelSchema = z.enum([\"silent\", \"info\", \"debug\"]);\n\n/**\n * TUI (interactive) search configuration schema\n */\nexport const tuiConfigSchema = z.object({\n  limit: z.number().int().nonnegative(),\n  debounceMs: z.number().int().nonnegative(),\n});\n\n/**\n * Edit format schema\n */\nexport const editFormatSchema = z.enum([\"yaml\", \"json\"]);\n\n/**\n * Edit command configuration schema\n */\nexport const editConfigSchema = z.object({\n  defaultFormat: editFormatSchema,\n});\n\n/**\n * CLI configuration schema\n */\nexport const cliConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n  defaultSort: sortFieldSchema,\n  defaultOrder: sortOrderSchema,\n  tui: tuiConfigSchema,\n  edit: editConfigSchema,\n});\n\n/**\n * MCP configuration schema\n */\nexport const mcpConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n});\n\n/**\n * Backup configuration schema\n */\nexport const backupConfigSchema = z.object({\n  maxGenerations: z.number().int().positive(),\n  maxAgeDays: z.number().int().positive(),\n  directory: z.string().min(1),\n});\n\n/**\n * File watching configuration schema\n * Note: File watching is always enabled in server mode (HTTP/MCP).\n * CLI mode does not use file watching.\n */\nexport const watchConfigSchema = z.object({\n  debounceMs: z.number().int().nonnegative(),\n  pollIntervalMs: z.number().int().positive(),\n  retryIntervalMs: z.number().int().positive(),\n  maxRetries: z.number().int().nonnegative(),\n});\n\n/**\n * Server configuration schema\n */\nexport const serverConfigSchema = z.object({\n  autoStart: z.boolean(),\n  autoStopMinutes: z.number().int().nonnegative(),\n});\n\n/**\n * Citation format schema\n */\nexport const citationFormatSchema = z.enum([\"text\", \"html\", \"rtf\"]);\n\n/**\n * Citation configuration schema\n */\nexport const citationConfigSchema = z.object({\n  defaultStyle: z.string(),\n  cslDirectory: z.array(z.string()),\n  defaultLocale: z.string(),\n  defaultFormat: citationFormatSchema,\n});\n\n/**\n * PubMed API configuration schema\n */\nexport const pubmedConfigSchema = z.object({\n  email: z.string().optional(),\n  apiKey: z.string().optional(),\n});\n\n/**\n * Fulltext storage configuration schema\n */\nexport const fulltextConfigSchema = z.object({\n  directory: z.string().min(1),\n});\n\n/**\n * Attachments storage configuration schema\n */\nexport const attachmentsConfigSchema = z.object({\n  directory: z.string().min(1),\n});\n\n/**\n * Complete configuration schema\n */\nexport const configSchema = z.object({\n  library: z.string().min(1),\n  logLevel: logLevelSchema,\n  backup: backupConfigSchema,\n  watch: watchConfigSchema,\n  server: serverConfigSchema,\n  citation: citationConfigSchema,\n  pubmed: pubmedConfigSchema,\n  fulltext: fulltextConfigSchema,\n  attachments: attachmentsConfigSchema,\n  cli: cliConfigSchema,\n  mcp: mcpConfigSchema,\n});\n\n/**\n * Partial configuration schema (for TOML files)\n * Supports both camelCase and snake_case field names\n */\nexport const partialConfigSchema = z\n  .object({\n    library: z.string().min(1).optional(),\n    logLevel: logLevelSchema.optional(),\n    log_level: logLevelSchema.optional(), // snake_case support\n    backup: z\n      .object({\n        maxGenerations: z.number().int().positive().optional(),\n        max_generations: z.number().int().positive().optional(),\n        maxAgeDays: z.number().int().positive().optional(),\n        max_age_days: z.number().int().positive().optional(),\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    watch: z\n      .object({\n        debounceMs: z.number().int().nonnegative().optional(),\n        debounce_ms: z.number().int().nonnegative().optional(),\n        pollIntervalMs: z.number().int().positive().optional(),\n        poll_interval_ms: z.number().int().positive().optional(),\n        retryIntervalMs: z.number().int().positive().optional(),\n        retry_interval_ms: z.number().int().positive().optional(),\n        maxRetries: z.number().int().nonnegative().optional(),\n        max_retries: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    server: z\n      .object({\n        autoStart: z.boolean().optional(),\n        auto_start: z.boolean().optional(),\n        autoStopMinutes: z.number().int().nonnegative().optional(),\n        auto_stop_minutes: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    citation: z\n      .object({\n        defaultStyle: z.string().optional(),\n        default_style: z.string().optional(),\n        cslDirectory: z.union([z.string(), z.array(z.string())]).optional(),\n        csl_directory: z.union([z.string(), z.array(z.string())]).optional(),\n        defaultLocale: z.string().optional(),\n        default_locale: z.string().optional(),\n        defaultFormat: citationFormatSchema.optional(),\n        default_format: citationFormatSchema.optional(),\n      })\n      .optional(),\n    pubmed: z\n      .object({\n        email: z.string().optional(),\n        apiKey: z.string().optional(),\n        api_key: z.string().optional(),\n      })\n      .optional(),\n    fulltext: z\n      .object({\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    attachments: z\n      .object({\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    cli: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n        defaultSort: sortFieldSchema.optional(),\n        default_sort: sortFieldSchema.optional(),\n        defaultOrder: sortOrderSchema.optional(),\n        default_order: sortOrderSchema.optional(),\n        tui: z\n          .object({\n            limit: z.number().int().nonnegative().optional(),\n            debounceMs: z.number().int().nonnegative().optional(),\n            debounce_ms: z.number().int().nonnegative().optional(),\n          })\n          .optional(),\n        edit: z\n          .object({\n            defaultFormat: editFormatSchema.optional(),\n            default_format: editFormatSchema.optional(),\n          })\n          .optional(),\n      })\n      .optional(),\n    mcp: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n  })\n  .passthrough(); // Allow unknown fields in TOML files\n\n/**\n * Inferred types from schemas\n */\nexport type LogLevel = z.infer<typeof logLevelSchema>;\nexport type BackupConfig = z.infer<typeof backupConfigSchema>;\nexport type WatchConfig = z.infer<typeof watchConfigSchema>;\nexport type ServerConfig = z.infer<typeof serverConfigSchema>;\nexport type CitationFormat = z.infer<typeof citationFormatSchema>;\nexport type CitationConfig = z.infer<typeof citationConfigSchema>;\nexport type PubmedConfig = z.infer<typeof pubmedConfigSchema>;\nexport type FulltextConfig = z.infer<typeof fulltextConfigSchema>;\nexport type AttachmentsConfig = z.infer<typeof attachmentsConfigSchema>;\nexport type TuiConfig = z.infer<typeof tuiConfigSchema>;\nexport type EditConfigFormat = z.infer<typeof editFormatSchema>;\nexport type EditConfig = z.infer<typeof editConfigSchema>;\nexport type CliConfig = z.infer<typeof cliConfigSchema>;\nexport type McpConfig = z.infer<typeof mcpConfigSchema>;\nexport type Config = z.infer<typeof configSchema>;\nexport type PartialConfig = z.infer<typeof partialConfigSchema>;\n\n/**\n * Deep partial type for Config\n */\nexport type DeepPartialConfig = {\n  library?: string;\n  logLevel?: LogLevel;\n  backup?: Partial<BackupConfig>;\n  watch?: Partial<WatchConfig>;\n  server?: Partial<ServerConfig>;\n  citation?: Partial<CitationConfig>;\n  pubmed?: Partial<PubmedConfig>;\n  fulltext?: Partial<FulltextConfig>;\n  attachments?: Partial<AttachmentsConfig>;\n  cli?: Partial<Omit<CliConfig, \"tui\" | \"edit\">> & {\n    tui?: Partial<TuiConfig>;\n    edit?: Partial<EditConfig>;\n  };\n  mcp?: Partial<McpConfig>;\n};\n\n/**\n * Normalize backup configuration from snake_case to camelCase\n */\nfunction normalizeBackupConfig(\n  backup: Partial<{\n    maxGenerations?: number;\n    max_generations?: number;\n    maxAgeDays?: number;\n    max_age_days?: number;\n    directory?: string;\n  }>\n): Partial<BackupConfig> | undefined {\n  const normalized: Partial<BackupConfig> = {};\n\n  const maxGenerations = backup.maxGenerations ?? backup.max_generations;\n  if (maxGenerations !== undefined) {\n    normalized.maxGenerations = maxGenerations;\n  }\n\n  const maxAgeDays = backup.maxAgeDays ?? backup.max_age_days;\n  if (maxAgeDays !== undefined) {\n    normalized.maxAgeDays = maxAgeDays;\n  }\n\n  if (backup.directory !== undefined) {\n    normalized.directory = backup.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize watch configuration from snake_case to camelCase\n */\nfunction normalizeWatchConfig(\n  watch: Partial<{\n    debounceMs?: number;\n    debounce_ms?: number;\n    pollIntervalMs?: number;\n    poll_interval_ms?: number;\n    retryIntervalMs?: number;\n    retry_interval_ms?: number;\n    maxRetries?: number;\n    max_retries?: number;\n  }>\n): Partial<WatchConfig> | undefined {\n  const normalized: Partial<WatchConfig> = {};\n\n  const debounceMs = watch.debounceMs ?? watch.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n\n  const pollIntervalMs = watch.pollIntervalMs ?? watch.poll_interval_ms;\n  if (pollIntervalMs !== undefined) {\n    normalized.pollIntervalMs = pollIntervalMs;\n  }\n\n  const retryIntervalMs = watch.retryIntervalMs ?? watch.retry_interval_ms;\n  if (retryIntervalMs !== undefined) {\n    normalized.retryIntervalMs = retryIntervalMs;\n  }\n\n  const maxRetries = watch.maxRetries ?? watch.max_retries;\n  if (maxRetries !== undefined) {\n    normalized.maxRetries = maxRetries;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize server configuration from snake_case to camelCase\n */\nfunction normalizeServerConfig(\n  server: Partial<{\n    autoStart?: boolean;\n    auto_start?: boolean;\n    autoStopMinutes?: number;\n    auto_stop_minutes?: number;\n  }>\n): Partial<ServerConfig> | undefined {\n  const normalized: Partial<ServerConfig> = {};\n\n  const autoStart = server.autoStart ?? server.auto_start;\n  if (autoStart !== undefined) {\n    normalized.autoStart = autoStart;\n  }\n\n  const autoStopMinutes = server.autoStopMinutes ?? server.auto_stop_minutes;\n  if (autoStopMinutes !== undefined) {\n    normalized.autoStopMinutes = autoStopMinutes;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize citation configuration from snake_case to camelCase\n */\nfunction normalizeCitationConfig(\n  citation: Partial<{\n    defaultStyle?: string;\n    default_style?: string;\n    cslDirectory?: string | string[];\n    csl_directory?: string | string[];\n    defaultLocale?: string;\n    default_locale?: string;\n    defaultFormat?: CitationFormat;\n    default_format?: CitationFormat;\n  }>\n): Partial<CitationConfig> | undefined {\n  const normalized: Partial<CitationConfig> = {};\n\n  const defaultStyle = citation.defaultStyle ?? citation.default_style;\n  if (defaultStyle !== undefined) {\n    normalized.defaultStyle = defaultStyle;\n  }\n\n  const cslDirectory = citation.cslDirectory ?? citation.csl_directory;\n  if (cslDirectory !== undefined) {\n    // Normalize to array: string -> [string]\n    normalized.cslDirectory = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];\n  }\n\n  const defaultLocale = citation.defaultLocale ?? citation.default_locale;\n  if (defaultLocale !== undefined) {\n    normalized.defaultLocale = defaultLocale;\n  }\n\n  const defaultFormat = citation.defaultFormat ?? citation.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize pubmed configuration from snake_case to camelCase\n */\nfunction normalizePubmedConfig(\n  pubmed: Partial<{\n    email?: string;\n    apiKey?: string;\n    api_key?: string;\n  }>\n): Partial<PubmedConfig> | undefined {\n  const normalized: Partial<PubmedConfig> = {};\n\n  if (pubmed.email !== undefined) {\n    normalized.email = pubmed.email;\n  }\n\n  const apiKey = pubmed.apiKey ?? pubmed.api_key;\n  if (apiKey !== undefined) {\n    normalized.apiKey = apiKey;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Section normalizers mapping\n */\nconst sectionNormalizers = {\n  backup: normalizeBackupConfig,\n  watch: normalizeWatchConfig,\n  server: normalizeServerConfig,\n  citation: normalizeCitationConfig,\n  pubmed: normalizePubmedConfig,\n  fulltext: normalizeFulltextConfig,\n  attachments: normalizeAttachmentsConfig,\n  cli: normalizeCliConfig,\n  mcp: normalizeMcpConfig,\n} as const;\n\ntype SectionKey = keyof typeof sectionNormalizers;\n\n/**\n * Helper to apply a normalizer function to a config section\n */\nfunction applyNormalizer<K extends SectionKey>(\n  normalized: DeepPartialConfig,\n  partial: PartialConfig,\n  key: K,\n  normalizer: (typeof sectionNormalizers)[K]\n): void {\n  const value = partial[key];\n  if (value !== undefined) {\n    const result = (normalizer as (input: unknown) => DeepPartialConfig[K] | undefined)(value);\n    if (result) {\n      normalized[key] = result;\n    }\n  }\n}\n\n/**\n * Normalize snake_case fields to camelCase\n */\nexport function normalizePartialConfig(partial: PartialConfig): DeepPartialConfig {\n  const normalized: DeepPartialConfig = {};\n\n  // Simple fields\n  if (partial.library !== undefined) {\n    normalized.library = partial.library;\n  }\n  const logLevel = partial.logLevel ?? partial.log_level;\n  if (logLevel !== undefined) {\n    normalized.logLevel = logLevel;\n  }\n\n  // Section fields\n  for (const key of Object.keys(sectionNormalizers) as SectionKey[]) {\n    applyNormalizer(normalized, partial, key, sectionNormalizers[key]);\n  }\n\n  return normalized;\n}\n\n/**\n * Normalize fulltext configuration\n */\nfunction normalizeFulltextConfig(fulltext: {\n  directory?: string | undefined;\n}): Partial<FulltextConfig> | undefined {\n  const normalized: Partial<FulltextConfig> = {};\n\n  if (fulltext.directory !== undefined) {\n    normalized.directory = fulltext.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize attachments configuration\n */\nfunction normalizeAttachmentsConfig(attachments: {\n  directory?: string | undefined;\n}): Partial<AttachmentsConfig> | undefined {\n  const normalized: Partial<AttachmentsConfig> = {};\n\n  if (attachments.directory !== undefined) {\n    normalized.directory = attachments.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize TUI config subsection\n */\nfunction normalizeTuiSection(\n  tui: Partial<{\n    limit?: number;\n    debounceMs?: number;\n    debounce_ms?: number;\n  }>\n): Partial<TuiConfig> | undefined {\n  const normalized: Partial<TuiConfig> = {};\n  if (tui.limit !== undefined) {\n    normalized.limit = tui.limit;\n  }\n  const debounceMs = tui.debounceMs ?? tui.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize edit config subsection\n */\nfunction normalizeEditSection(\n  edit: Partial<{\n    defaultFormat?: EditConfigFormat;\n    default_format?: EditConfigFormat;\n  }>\n): Partial<EditConfig> | undefined {\n  const normalized: Partial<EditConfig> = {};\n  const defaultFormat = edit.defaultFormat ?? edit.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize CLI configuration from snake_case to camelCase\n */\nfunction normalizeCliConfig(\n  cli: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n    defaultSort?: CliConfig[\"defaultSort\"];\n    default_sort?: CliConfig[\"defaultSort\"];\n    defaultOrder?: CliConfig[\"defaultOrder\"];\n    default_order?: CliConfig[\"defaultOrder\"];\n    tui?: Partial<{\n      limit?: number;\n      debounceMs?: number;\n      debounce_ms?: number;\n    }>;\n    edit?: Partial<{\n      defaultFormat?: EditConfigFormat;\n      default_format?: EditConfigFormat;\n    }>;\n  }>\n): Partial<CliConfig> | undefined {\n  const normalized: Partial<CliConfig> = {};\n\n  const defaultLimit = cli.defaultLimit ?? cli.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  const defaultSort = cli.defaultSort ?? cli.default_sort;\n  if (defaultSort !== undefined) {\n    normalized.defaultSort = defaultSort;\n  }\n\n  const defaultOrder = cli.defaultOrder ?? cli.default_order;\n  if (defaultOrder !== undefined) {\n    normalized.defaultOrder = defaultOrder;\n  }\n\n  if (cli.tui !== undefined) {\n    const tui = normalizeTuiSection(cli.tui);\n    if (tui) {\n      normalized.tui = tui as TuiConfig;\n    }\n  }\n\n  if (cli.edit !== undefined) {\n    const edit = normalizeEditSection(cli.edit);\n    if (edit) {\n      normalized.edit = edit as EditConfig;\n    }\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize MCP configuration from snake_case to camelCase\n */\nfunction normalizeMcpConfig(\n  mcp: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n  }>\n): Partial<McpConfig> | undefined {\n  const normalized: Partial<McpConfig> = {};\n\n  const defaultLimit = mcp.defaultLimit ?? mcp.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n","import path from 'node:path';\nimport os from 'node:os';\nimport process from 'node:process';\n\nconst homedir = os.homedir();\nconst tmpdir = os.tmpdir();\nconst {env} = process;\n\nconst macos = name => {\n\tconst library = path.join(homedir, 'Library');\n\n\treturn {\n\t\tdata: path.join(library, 'Application Support', name),\n\t\tconfig: path.join(library, 'Preferences', name),\n\t\tcache: path.join(library, 'Caches', name),\n\t\tlog: path.join(library, 'Logs', name),\n\t\ttemp: path.join(tmpdir, name),\n\t};\n};\n\nconst windows = name => {\n\tconst appData = env.APPDATA || path.join(homedir, 'AppData', 'Roaming');\n\tconst localAppData = env.LOCALAPPDATA || path.join(homedir, 'AppData', 'Local');\n\n\treturn {\n\t\t// Data/config/cache/log are invented by me as Windows isn't opinionated about this\n\t\tdata: path.join(localAppData, name, 'Data'),\n\t\tconfig: path.join(appData, name, 'Config'),\n\t\tcache: path.join(localAppData, name, 'Cache'),\n\t\tlog: path.join(localAppData, name, 'Log'),\n\t\ttemp: path.join(tmpdir, name),\n\t};\n};\n\n// https://specifications.freedesktop.org/basedir-spec/basedir-spec-latest.html\nconst linux = name => {\n\tconst username = path.basename(homedir);\n\n\treturn {\n\t\tdata: path.join(env.XDG_DATA_HOME || path.join(homedir, '.local', 'share'), name),\n\t\tconfig: path.join(env.XDG_CONFIG_HOME || path.join(homedir, '.config'), name),\n\t\tcache: path.join(env.XDG_CACHE_HOME || path.join(homedir, '.cache'), name),\n\t\t// https://wiki.debian.org/XDGBaseDirectorySpecification#state\n\t\tlog: path.join(env.XDG_STATE_HOME || path.join(homedir, '.local', 'state'), name),\n\t\ttemp: path.join(tmpdir, username, name),\n\t};\n};\n\nexport default function envPaths(name, {suffix = 'nodejs'} = {}) {\n\tif (typeof name !== 'string') {\n\t\tthrow new TypeError(`Expected a string, got ${typeof name}`);\n\t}\n\n\tif (suffix) {\n\t\t// Add suffix to prevent possible conflict with native apps\n\t\tname += `-${suffix}`;\n\t}\n\n\tif (process.platform === 'darwin') {\n\t\treturn macos(name);\n\t}\n\n\tif (process.platform === 'win32') {\n\t\treturn windows(name);\n\t}\n\n\treturn linux(name);\n}\n","/**\n * Platform-specific paths using env-paths\n *\n * Returns XDG-compliant paths on Linux, standard paths on macOS/Windows\n */\n\nimport envPaths from \"env-paths\";\n\nconst paths = envPaths(\"reference-manager\", { suffix: \"\" });\n\nexport interface Paths {\n  config: string;\n  data: string;\n  cache: string;\n}\n\n/**\n * Get platform-specific paths for config, data, and cache directories\n *\n * - Linux: XDG Base Directory Specification (~/.config, ~/.local/share, ~/.cache)\n * - macOS: ~/Library/Preferences, ~/Library/Application Support, ~/Library/Caches\n * - Windows: %APPDATA%, %LOCALAPPDATA%\n */\nexport function getPaths(): Paths {\n  return {\n    config: paths.config,\n    data: paths.data,\n    cache: paths.cache,\n  };\n}\n","/**\n * Default configuration values\n */\n\nimport { join } from \"node:path\";\nimport { getPaths } from \"./paths.js\";\nimport type { Config } from \"./schema.js\";\n\n/**\n * Get the default backup directory\n * Uses platform-specific cache path + backups/\n */\nexport function getDefaultBackupDirectory(): string {\n  return join(getPaths().cache, \"backups\");\n}\n\n/**\n * Get the default library path\n * Uses platform-specific data path + library.json\n */\nexport function getDefaultLibraryPath(): string {\n  return join(getPaths().data, \"library.json\");\n}\n\n/**\n * Get the default user config path\n * Uses platform-specific config path + config.toml\n */\nexport function getDefaultUserConfigPath(): string {\n  return join(getPaths().config, \"config.toml\");\n}\n\n/**\n * Get the default current directory config filename\n * Uses .reference-manager.config.toml\n */\nexport function getDefaultCurrentDirConfigFilename(): string {\n  return \".reference-manager.config.toml\";\n}\n\n/**\n * Get the default CSL directory\n * Uses platform-specific data path + csl/\n */\nexport function getDefaultCslDirectory(): string {\n  return join(getPaths().data, \"csl\");\n}\n\n/**\n * Get the default fulltext directory\n * @deprecated Use getDefaultAttachmentsDirectory() instead.\n * Fulltext is now stored in the attachments directory.\n */\nexport function getDefaultFulltextDirectory(): string {\n  return getDefaultAttachmentsDirectory();\n}\n\n/**\n * Get the default attachments directory\n * Uses platform-specific data path + attachments/\n */\nexport function getDefaultAttachmentsDirectory(): string {\n  return join(getPaths().data, \"attachments\");\n}\n\n/**\n * Default configuration\n */\nexport const defaultConfig: Config = {\n  library: getDefaultLibraryPath(),\n  logLevel: \"info\",\n  backup: {\n    maxGenerations: 50,\n    maxAgeDays: 365,\n    directory: getDefaultBackupDirectory(),\n  },\n  watch: {\n    debounceMs: 500,\n    pollIntervalMs: 5000,\n    retryIntervalMs: 200,\n    maxRetries: 10,\n  },\n  server: {\n    autoStart: false,\n    autoStopMinutes: 0,\n  },\n  citation: {\n    defaultStyle: \"apa\",\n    cslDirectory: [getDefaultCslDirectory()],\n    defaultLocale: \"en-US\",\n    defaultFormat: \"text\",\n  },\n  pubmed: {\n    email: undefined,\n    apiKey: undefined,\n  },\n  fulltext: {\n    directory: getDefaultAttachmentsDirectory(),\n  },\n  attachments: {\n    directory: getDefaultAttachmentsDirectory(),\n  },\n  cli: {\n    defaultLimit: 0,\n    defaultSort: \"updated\",\n    defaultOrder: \"desc\",\n    tui: {\n      limit: 20,\n      debounceMs: 200,\n    },\n    edit: {\n      defaultFormat: \"yaml\",\n    },\n  },\n  mcp: {\n    defaultLimit: 20,\n  },\n};\n","/**\n * Configuration loader\n */\n\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { parse as parseTOML } from \"@iarna/toml\";\nimport {\n  defaultConfig,\n  getDefaultCurrentDirConfigFilename,\n  getDefaultUserConfigPath,\n} from \"./defaults.js\";\nimport {\n  type Config,\n  type DeepPartialConfig,\n  type PartialConfig,\n  configSchema,\n  normalizePartialConfig,\n  partialConfigSchema,\n} from \"./schema.js\";\n\n/**\n * Options for loading configuration\n */\nexport interface LoadConfigOptions {\n  /** Current working directory (default: process.cwd()) */\n  cwd?: string;\n  /** User config path (default: ~/.reference-manager/config.toml) */\n  userConfigPath?: string;\n  /** CLI argument overrides */\n  overrides?: Partial<Config>;\n}\n\n/**\n * Load and parse a TOML config file\n */\nfunction loadTOMLFile(path: string): PartialConfig | null {\n  if (!existsSync(path)) {\n    return null;\n  }\n\n  try {\n    const content = readFileSync(path, \"utf-8\");\n    const parsed = parseTOML(content);\n\n    // Validate with partial schema\n    const validated = partialConfigSchema.parse(parsed);\n    return validated;\n  } catch (error) {\n    throw new Error(\n      `Failed to load config from ${path}: ${error instanceof Error ? error.message : String(error)}`\n    );\n  }\n}\n\n/**\n * Merge CLI config with nested interactive section\n */\nfunction mergeCliConfig(\n  base: DeepPartialConfig[\"cli\"],\n  override: NonNullable<DeepPartialConfig[\"cli\"]>\n): NonNullable<DeepPartialConfig[\"cli\"]> {\n  const { tui: overrideTui, ...overrideCliRest } = override;\n  const { tui: baseTui, ...baseCliRest } = base ?? {};\n  const mergedTui = overrideTui !== undefined ? { ...baseTui, ...overrideTui } : baseTui;\n  return {\n    ...baseCliRest,\n    ...overrideCliRest,\n    ...(mergedTui !== undefined ? { tui: mergedTui } : {}),\n  };\n}\n\n/**\n * Merge partial configurations\n * Later configs override earlier ones\n */\nfunction mergeConfigs(\n  base: DeepPartialConfig,\n  ...overrides: (DeepPartialConfig | null | undefined)[]\n): DeepPartialConfig {\n  const result: DeepPartialConfig = { ...base };\n\n  const sectionKeys = [\n    \"backup\",\n    \"watch\",\n    \"server\",\n    \"citation\",\n    \"pubmed\",\n    \"fulltext\",\n    \"mcp\",\n  ] as const;\n\n  for (const override of overrides) {\n    if (!override) continue;\n\n    // Merge top-level primitive fields\n    if (override.library !== undefined) {\n      result.library = override.library;\n    }\n    if (override.logLevel !== undefined) {\n      result.logLevel = override.logLevel;\n    }\n\n    // Merge section configs\n    for (const key of sectionKeys) {\n      if (override[key] !== undefined) {\n        result[key] = {\n          ...result[key],\n          ...override[key],\n        };\n      }\n    }\n\n    // Merge cli config with nested interactive\n    if (override.cli !== undefined) {\n      result.cli = mergeCliConfig(result.cli, override.cli);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Fill missing fields with defaults\n */\nfunction fillDefaults(partial: DeepPartialConfig): Config {\n  const envLibrary = process.env.REFERENCE_MANAGER_LIBRARY;\n  const library = envLibrary ?? partial.library ?? defaultConfig.library;\n  return {\n    library: expandTilde(library),\n    logLevel: partial.logLevel ?? defaultConfig.logLevel,\n    backup: {\n      maxGenerations: partial.backup?.maxGenerations ?? defaultConfig.backup.maxGenerations,\n      maxAgeDays: partial.backup?.maxAgeDays ?? defaultConfig.backup.maxAgeDays,\n      directory: partial.backup?.directory ?? defaultConfig.backup.directory,\n    },\n    watch: {\n      debounceMs: partial.watch?.debounceMs ?? defaultConfig.watch.debounceMs,\n      pollIntervalMs: partial.watch?.pollIntervalMs ?? defaultConfig.watch.pollIntervalMs,\n      retryIntervalMs: partial.watch?.retryIntervalMs ?? defaultConfig.watch.retryIntervalMs,\n      maxRetries: partial.watch?.maxRetries ?? defaultConfig.watch.maxRetries,\n    },\n    server: {\n      autoStart: partial.server?.autoStart ?? defaultConfig.server.autoStart,\n      autoStopMinutes: partial.server?.autoStopMinutes ?? defaultConfig.server.autoStopMinutes,\n    },\n    citation: fillCitationDefaults(partial.citation),\n    pubmed: fillPubmedDefaults(partial.pubmed),\n    fulltext: fillFulltextDefaults(partial.fulltext),\n    attachments: fillAttachmentsDefaults(partial.attachments),\n    cli: fillCliDefaults(partial.cli),\n    mcp: fillMcpDefaults(partial.mcp),\n  };\n}\n\n/**\n * Fill citation config with defaults\n */\nfunction fillCitationDefaults(partial: DeepPartialConfig[\"citation\"]): Config[\"citation\"] {\n  return {\n    defaultStyle: partial?.defaultStyle ?? defaultConfig.citation.defaultStyle,\n    cslDirectory: partial?.cslDirectory ?? defaultConfig.citation.cslDirectory,\n    defaultLocale: partial?.defaultLocale ?? defaultConfig.citation.defaultLocale,\n    defaultFormat: partial?.defaultFormat ?? defaultConfig.citation.defaultFormat,\n  };\n}\n\n/**\n * Fill pubmed config with defaults\n * Environment variables take priority over config file values\n */\nfunction fillPubmedDefaults(partial: DeepPartialConfig[\"pubmed\"]): Config[\"pubmed\"] {\n  // Environment variables take priority\n  const email = process.env.PUBMED_EMAIL ?? partial?.email ?? defaultConfig.pubmed.email;\n  const apiKey = process.env.PUBMED_API_KEY ?? partial?.apiKey ?? defaultConfig.pubmed.apiKey;\n\n  return {\n    email,\n    apiKey,\n  };\n}\n\n/**\n * Expand ~ to home directory\n */\nfunction expandTilde(path: string): string {\n  if (path.startsWith(\"~/\")) {\n    return join(homedir(), path.slice(2));\n  }\n  return path;\n}\n\n/**\n * Fill fulltext config with defaults\n *\n * @deprecated Fulltext now uses attachments directory.\n * Priority:\n * 1. Environment variable REFERENCE_MANAGER_ATTACHMENTS_DIR\n * 2. Config file setting\n * 3. Default value (same as attachments.directory)\n */\nfunction fillFulltextDefaults(partial: DeepPartialConfig[\"fulltext\"]): Config[\"fulltext\"] {\n  const envDir = process.env.REFERENCE_MANAGER_ATTACHMENTS_DIR;\n  const directory = envDir ?? partial?.directory ?? defaultConfig.fulltext.directory;\n  return {\n    directory: expandTilde(directory),\n  };\n}\n\n/**\n * Fill attachments config with defaults\n *\n * Priority:\n * 1. Environment variable REFERENCE_MANAGER_ATTACHMENTS_DIR\n * 2. Config file setting\n * 3. Default value\n */\nfunction fillAttachmentsDefaults(partial: DeepPartialConfig[\"attachments\"]): Config[\"attachments\"] {\n  const envDir = process.env.REFERENCE_MANAGER_ATTACHMENTS_DIR;\n  const directory = envDir ?? partial?.directory ?? defaultConfig.attachments.directory;\n  return {\n    directory: expandTilde(directory),\n  };\n}\n\n/**\n * Fill CLI config with defaults\n *\n * Priority:\n * 1. Environment variable REFERENCE_MANAGER_CLI_DEFAULT_LIMIT\n * 2. Config file setting\n * 3. Default value\n */\nfunction fillCliDefaults(partial: DeepPartialConfig[\"cli\"]): Config[\"cli\"] {\n  const envLimit = process.env.REFERENCE_MANAGER_CLI_DEFAULT_LIMIT;\n  const defaultLimit =\n    envLimit !== undefined\n      ? Number(envLimit)\n      : (partial?.defaultLimit ?? defaultConfig.cli.defaultLimit);\n  return {\n    defaultLimit,\n    defaultSort: partial?.defaultSort ?? defaultConfig.cli.defaultSort,\n    defaultOrder: partial?.defaultOrder ?? defaultConfig.cli.defaultOrder,\n    tui: {\n      limit: partial?.tui?.limit ?? defaultConfig.cli.tui.limit,\n      debounceMs: partial?.tui?.debounceMs ?? defaultConfig.cli.tui.debounceMs,\n    },\n    edit: {\n      defaultFormat: partial?.edit?.defaultFormat ?? defaultConfig.cli.edit.defaultFormat,\n    },\n  };\n}\n\n/**\n * Fill MCP config with defaults\n *\n * Priority:\n * 1. Environment variable REFERENCE_MANAGER_MCP_DEFAULT_LIMIT\n * 2. Config file setting\n * 3. Default value\n */\nfunction fillMcpDefaults(partial: DeepPartialConfig[\"mcp\"]): Config[\"mcp\"] {\n  const envLimit = process.env.REFERENCE_MANAGER_MCP_DEFAULT_LIMIT;\n  const defaultLimit =\n    envLimit !== undefined\n      ? Number(envLimit)\n      : (partial?.defaultLimit ?? defaultConfig.mcp.defaultLimit);\n  return {\n    defaultLimit,\n  };\n}\n\n/**\n * Load configuration from multiple sources\n *\n * Priority (highest to lowest):\n * 1. CLI argument overrides\n * 2. Current directory config (.reference-manager.config.toml)\n * 3. Environment variable (REFERENCE_MANAGER_CONFIG)\n * 4. User config (~/.reference-manager/config.toml)\n * 5. Default values\n */\nexport function loadConfig(options: LoadConfigOptions = {}): Config {\n  const cwd = options.cwd ?? process.cwd();\n  const userConfigPath = options.userConfigPath ?? getDefaultUserConfigPath();\n\n  // 1. Load user config (lowest priority)\n  const userConfig = loadTOMLFile(userConfigPath);\n\n  // 2. Load environment variable config\n  const envConfigPath = process.env.REFERENCE_MANAGER_CONFIG;\n  const envConfig = envConfigPath ? loadTOMLFile(envConfigPath) : null;\n\n  // 3. Load current directory config (highest priority)\n  const currentConfigPath = join(cwd, getDefaultCurrentDirConfigFilename());\n  const currentConfig = loadTOMLFile(currentConfigPath);\n\n  // Normalize snake_case to camelCase\n  const normalizedUser = userConfig ? normalizePartialConfig(userConfig) : null;\n  const normalizedEnv = envConfig ? normalizePartialConfig(envConfig) : null;\n  const normalizedCurrent = currentConfig ? normalizePartialConfig(currentConfig) : null;\n\n  // Merge configs (priority: current > env > user > defaults)\n  const merged = mergeConfigs(\n    {},\n    normalizedUser,\n    normalizedEnv,\n    normalizedCurrent,\n    options.overrides\n  );\n\n  // Fill missing fields with defaults\n  const config = fillDefaults(merged);\n\n  // Validate final config\n  try {\n    return configSchema.parse(config);\n  } catch (error) {\n    throw new Error(\n      `Invalid configuration: ${error instanceof Error ? error.message : String(error)}`\n    );\n  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package/dist/chunks/{reference-select-DSVwE9iu.js → reference-select-B9w9CLa1.js}

@@ -1,6 +1,6 @@
-import { t as tokenize, s as search } from "./file-watcher-D2Y-SlcE.js";
+import { t as tokenize, s as search } from "./file-watcher-B_WpVHSV.js";
 import { runSearchPrompt } from "./search-prompt-BrWpOcij.js";
-import { checkTTY } from "./tty-CDBIQraQ.js";
+import { checkTTY } from "./tty-BMyaEOhX.js";
 async function runReferenceSelect(allReferences, options, config) {
   checkTTY();
   const searchFn = (query) => {
@@ -49,4 +49,4 @@ export {
   selectReferenceItemsOrExit,
   selectReferencesOrExit
 };
-//# sourceMappingURL=reference-select-DSVwE9iu.js.map
+//# sourceMappingURL=reference-select-B9w9CLa1.js.map

package/dist/chunks/{reference-select-DSVwE9iu.js.map → reference-select-B9w9CLa1.js.map}

@@ -1 +1 @@
-{"version":3,"file":"reference-select-DSVwE9iu.js","sources":["../../src/features/interactive/reference-select.ts"],"sourcesContent":["/**\n * Shared reference selection utility for interactive ID selection.\n *\n * This module provides a reusable function to select references interactively\n * using the existing search prompt infrastructure.\n */\n\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport { search } from \"../search/matcher.js\";\nimport { tokenize } from \"../search/tokenizer.js\";\nimport { type SearchPromptConfig, runSearchPrompt } from \"./search-prompt.js\";\nimport { checkTTY } from \"./tty.js\";\n\n/**\n * Options for reference selection\n */\nexport interface ReferenceSelectOptions {\n  /** Whether to allow multiple selection (default: true) */\n  multiSelect: boolean;\n  /** Custom prompt message */\n  prompt?: string;\n  /** Initial search query */\n  initialQuery?: string;\n}\n\n/**\n * Result from reference selection\n */\nexport interface ReferenceSelectResult {\n  /** Selected references */\n  selected: CslItem[];\n  /** Whether the selection was cancelled */\n  cancelled: boolean;\n}\n\n/**\n * Run interactive reference selection.\n *\n * Launches an interactive search prompt to select references from the library.\n * Supports both single and multiple selection modes.\n *\n * @param allReferences - All references available for selection\n * @param options - Selection options\n * @param config - Interactive prompt configuration\n * @returns Selection result with selected references\n * @throws TTYError if not running in a TTY environment\n */\nexport async function runReferenceSelect(\n  allReferences: CslItem[],\n  options: ReferenceSelectOptions,\n  config: SearchPromptConfig\n): Promise<ReferenceSelectResult> {\n  // Check TTY requirement\n  checkTTY();\n\n  // Create search function for runSearchPrompt\n  const searchFn = (query: string) => {\n    const { tokens } = tokenize(query);\n    return search(allReferences, tokens);\n  };\n\n  // Run search prompt\n  const searchResult = await runSearchPrompt(\n    allReferences,\n    searchFn,\n    config,\n    options.initialQuery ?? \"\"\n  );\n\n  if (searchResult.cancelled) {\n    return { selected: [], cancelled: true };\n  }\n\n  // For single-select mode, return only the first selected item\n  const selected = options.multiSelect ? searchResult.selected : searchResult.selected.slice(0, 1);\n\n  return {\n    selected,\n    cancelled: false,\n  };\n}\n\n/**\n * Options for selectReferencesOrExit helper\n */\nexport interface SelectReferencesOrExitOptions {\n  /** Whether to allow multiple selection */\n  multiSelect: boolean;\n  /** Initial search query */\n  initialQuery?: string;\n}\n\n/**\n * Select references interactively or exit if cancelled/empty.\n *\n * This is a convenience wrapper around runReferenceSelect that handles\n * common patterns:\n * - Exits with code 0 if library is empty\n * - Exits with code 0 if selection is cancelled\n * - Returns selected identifiers\n *\n * @param allReferences - All references available for selection\n * @param options - Selection options\n * @param config - Interactive prompt configuration\n * @returns Array of selected reference IDs (never empty)\n */\nexport async function selectReferencesOrExit(\n  allReferences: CslItem[],\n  options: SelectReferencesOrExitOptions,\n  config: SearchPromptConfig\n): Promise<string[]> {\n  if (allReferences.length === 0) {\n    process.stderr.write(\"No references in library.\\n\");\n    process.exit(0);\n  }\n\n  const selectResult = await runReferenceSelect(allReferences, options, config);\n\n  if (selectResult.cancelled || selectResult.selected.length === 0) {\n    process.exit(0);\n  }\n\n  return selectResult.selected.map((item) => item.id);\n}\n\n/**\n * Select reference items interactively or exit if cancelled/empty.\n *\n * Similar to selectReferencesOrExit but returns full CslItem objects\n * instead of just identifiers. 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+{"version":3,"file":"reference-select-B9w9CLa1.js","sources":["../../src/features/interactive/reference-select.ts"],"sourcesContent":["/**\n * Shared reference selection utility for interactive ID selection.\n *\n * This module provides a reusable function to select references interactively\n * using the existing search prompt infrastructure.\n */\n\nimport type { CslItem } from \"../../core/csl-json/types.js\";\nimport { search } from \"../search/matcher.js\";\nimport { tokenize } from \"../search/tokenizer.js\";\nimport { type SearchPromptConfig, runSearchPrompt } from \"./search-prompt.js\";\nimport { checkTTY } from \"./tty.js\";\n\n/**\n * Options for reference selection\n */\nexport interface ReferenceSelectOptions {\n  /** Whether to allow multiple selection (default: true) */\n  multiSelect: boolean;\n  /** Custom prompt message */\n  prompt?: string;\n  /** Initial search query */\n  initialQuery?: string;\n}\n\n/**\n * Result from reference selection\n */\nexport interface ReferenceSelectResult {\n  /** Selected references */\n  selected: CslItem[];\n  /** Whether the selection was cancelled */\n  cancelled: boolean;\n}\n\n/**\n * Run interactive reference selection.\n *\n * Launches an interactive search prompt to select references from the library.\n * Supports both single and multiple selection modes.\n *\n * @param allReferences - All references available for selection\n * @param options - Selection options\n * @param config - Interactive prompt configuration\n * @returns Selection result with selected references\n * @throws TTYError if not running in a TTY environment\n */\nexport async function runReferenceSelect(\n  allReferences: CslItem[],\n  options: ReferenceSelectOptions,\n  config: SearchPromptConfig\n): Promise<ReferenceSelectResult> {\n  // Check TTY requirement\n  checkTTY();\n\n  // Create search function for runSearchPrompt\n  const searchFn = (query: string) => {\n    const { tokens } = tokenize(query);\n    return search(allReferences, tokens);\n  };\n\n  // Run search prompt\n  const searchResult = await runSearchPrompt(\n    allReferences,\n    searchFn,\n    config,\n    options.initialQuery ?? \"\"\n  );\n\n  if (searchResult.cancelled) {\n    return { selected: [], cancelled: true };\n  }\n\n  // For single-select mode, return only the first selected item\n  const selected = options.multiSelect ? searchResult.selected : searchResult.selected.slice(0, 1);\n\n  return {\n    selected,\n    cancelled: false,\n  };\n}\n\n/**\n * Options for selectReferencesOrExit helper\n */\nexport interface SelectReferencesOrExitOptions {\n  /** Whether to allow multiple selection */\n  multiSelect: boolean;\n  /** Initial search query */\n  initialQuery?: string;\n}\n\n/**\n * Select references interactively or exit if cancelled/empty.\n *\n * This is a convenience wrapper around runReferenceSelect that handles\n * common patterns:\n * - Exits with code 0 if library is empty\n * - Exits with code 0 if selection is cancelled\n * - Returns selected identifiers\n *\n * @param allReferences - All references available for selection\n * @param options - Selection options\n * @param config - Interactive prompt configuration\n * @returns Array of selected reference IDs (never empty)\n */\nexport async function selectReferencesOrExit(\n  allReferences: CslItem[],\n  options: SelectReferencesOrExitOptions,\n  config: SearchPromptConfig\n): Promise<string[]> {\n  if (allReferences.length === 0) {\n    process.stderr.write(\"No references in library.\\n\");\n    process.exit(0);\n  }\n\n  const selectResult = await runReferenceSelect(allReferences, options, config);\n\n  if (selectResult.cancelled || selectResult.selected.length === 0) {\n    process.exit(0);\n  }\n\n  return selectResult.selected.map((item) => item.id);\n}\n\n/**\n * Select reference items interactively or exit if cancelled/empty.\n *\n * Similar to selectReferencesOrExit but returns full CslItem objects\n * instead of just identifiers. 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package/dist/chunks/{style-select-CYo0O7MZ.js → style-select-BNQHC79W.js}

@@ -1,6 +1,6 @@
 import * as fs from "node:fs";
 import * as path from "node:path";
-import { B as BUILTIN_STYLES } from "./index-DapYyqAC.js";
+import { B as BUILTIN_STYLES } from "./index-DHgeuWGP.js";
 function expandTilde(filePath) {
   if (filePath.startsWith("~/")) {
     const home = process.env.HOME || process.env.USERPROFILE || "";
@@ -83,4 +83,4 @@ export {
   listCustomStyles,
   runStyleSelect
 };
-//# sourceMappingURL=style-select-CYo0O7MZ.js.map
+//# sourceMappingURL=style-select-BNQHC79W.js.map

package/dist/chunks/{style-select-CYo0O7MZ.js.map → style-select-BNQHC79W.js.map}

@@ -1 +1 @@
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cslDirectory : [cslDirectory];\n  const styles = new Set<string>();\n\n  for (const dir of directories) {\n    const expandedDir = expandTilde(dir);\n\n    if (!fs.existsSync(expandedDir)) {\n      continue;\n    }\n\n    try {\n      const files = fs.readdirSync(expandedDir);\n      for (const file of files) {\n        if (file.endsWith(\".csl\")) {\n          styles.add(file.slice(0, -4)); // Remove .csl extension\n        }\n      }\n    } catch {\n      // Ignore read errors\n    }\n  }\n\n  return Array.from(styles).sort();\n}\n\n/**\n * Build style choices for the selection prompt.\n *\n * @param customStyles - Custom style names from csl_directory\n * @param defaultStyle - Default style to show first\n * @returns Array of choices for Enquirer Select prompt\n */\nexport function buildStyleChoices(customStyles: string[], defaultStyle = \"apa\"): StyleChoice[] {\n  const choices: StyleChoice[] = [];\n  const addedStyles = new Set<string>();\n\n  // Helper to add a style choice\n  const addChoice = (styleName: string, isDefault: boolean) => {\n    if (addedStyles.has(styleName)) return;\n    addedStyles.add(styleName);\n\n    choices.push({\n      name: styleName,\n      message: isDefault ? `${styleName} (default)` : styleName,\n      value: styleName,\n    });\n  };\n\n  // Add default style first\n  addChoice(defaultStyle, true);\n\n  // Add built-in styles\n  for (const style of BUILTIN_STYLES) {\n    addChoice(style, false);\n  }\n\n  // Add custom styles (excluding any that match built-in names)\n  for (const style of customStyles) {\n    addChoice(style, false);\n  }\n\n  return choices;\n}\n\n/**\n * Run the style selection prompt.\n *\n * @param options - Style selection options\n * @returns Selection result with style name\n */\nexport async function runStyleSelect(options: StyleSelectOptions): Promise<StyleSelectResult> {\n  // Dynamic import to allow mocking in tests\n  const enquirer = await import(\"enquirer\");\n  const Select = (enquirer.default as unknown as Record<string, unknown>).Select as new (\n    opts: Record<string, unknown>\n  ) => { run(): Promise<string> };\n\n  // List custom styles from csl_directory\n  const customStyles = listCustomStyles(options.cslDirectory);\n\n  // Build choices with default first\n  const choices = buildStyleChoices(customStyles, options.defaultStyle);\n\n  const promptOptions = {\n    name: \"style\",\n    message: \"Select citation style:\",\n    choices,\n  };\n\n  try {\n    const prompt = new Select(promptOptions);\n    const result = await prompt.run();\n\n    return {\n      style: result,\n      cancelled: false,\n    };\n  } catch (error) {\n    // Enquirer throws an empty string when cancelled\n    if (error === \"\" || (error instanceof Error && error.message === \"\")) {\n      return {\n        cancelled: true,\n      };\n    }\n    throw error;\n  }\n}\n"],"names":[],"mappings":";;;AA2CA,SAAS,YAAY,UAA0B;AAC7C,MAAI,SAAS,WAAW,IAAI,GAAG;AAC7B,UAAM,OAAO,QAAQ,IAAI,QAAQ,QAAQ,IAAI,eAAe;AAC5D,WAAO,KAAK,KAAK,MAAM,SAAS,MAAM,CAAC,CAAC;AAAA,EAC1C;AACA,SAAO;AACT;AAQO,SAAS,iBAAiB,cAAuD;AACtF,MAAI,CAAC,cAAc;AACjB,WAAO,CAAA;AAAA,EACT;AAEA,QAAM,cAAc,MAAM,QAAQ,YAAY,IAAI,eAAe,CAAC,YAAY;AAC9E,QAAM,6BAAa,IAAA;AAEnB,aAAW,OAAO,aAAa;AAC7B,UAAM,cAAc,YAAY,GAAG;AAEnC,QAAI,CAAC,GAAG,WAAW,WAAW,GAAG;AAC/B;AAAA,IACF;AAEA,QAAI;AACF,YAAM,QAAQ,GAAG,YAAY,WAAW;AACxC,iBAAW,QAAQ,OAAO;AACxB,YAAI,KAAK,SAAS,MAAM,GAAG;AACzB,iBAAO,IAAI,KAAK,MAAM,GAAG,EAAE,CAAC;AAAA,QAC9B;AAAA,MACF;AAAA,IACF,QAAQ;AAAA,IAER;AAAA,EACF;AAEA,SAAO,MAAM,KAAK,MAAM,EAAE,KAAA;AAC5B;AASO,SAAS,kBAAkB,cAAwB,eAAe,OAAsB;AAC7F,QAAM,UAAyB,CAAA;AAC/B,QAAM,kCAAkB,IAAA;AAGxB,QAAM,YAAY,CAAC,WAAmB,cAAuB;AAC3D,QAAI,YAAY,IAAI,SAAS,EAAG;AAChC,gBAAY,IAAI,SAAS;AAEzB,YAAQ,KAAK;AAAA,MACX,MAAM;AAAA,MACN,SAAS,YAAY,GAAG,SAAS,eAAe;AAAA,MAChD,OAAO;AAAA,IAAA,CACR;AAAA,EACH;AAGA,YAAU,cAAc,IAAI;AAG5B,aAAW,SAAS,gBAAgB;AAClC,cAAU,OAAO,KAAK;AAAA,EACxB;AAGA,aAAW,SAAS,cAAc;AAChC,cAAU,OAAO,KAAK;AAAA,EACxB;AAEA,SAAO;AACT;AAQA,eAAsB,eAAe,SAAyD;AAE5F,QAAM,WAAW,MAAM,OAAO,UAAU;AACxC,QAAM,SAAU,SAAS,QAA+C;AAKxE,QAAM,eAAe,iBAAiB,QAAQ,YAAY;AAG1D,QAAM,UAAU,kBAAkB,cAAc,QAAQ,YAAY;AAEpE,QAAM,gBAAgB;AAAA,IACpB,MAAM;AAAA,IACN,SAAS;AAAA,IACT;AAAA,EAAA;AAGF,MAAI;AACF,UAAM,SAAS,IAAI,OAAO,aAAa;AACvC,UAAM,SAAS,MAAM,OAAO,IAAA;AAE5B,WAAO;AAAA,MACL,OAAO;AAAA,MACP,WAAW;AAAA,IAAA;AAAA,EAEf,SAAS,OAAO;AAEd,QAAI,UAAU,MAAO,iBAAiB,SAAS,MAAM,YAAY,IAAK;AACpE,aAAO;AAAA,QACL,WAAW;AAAA,MAAA;AAAA,IAEf;AACA,UAAM;AAAA,EACR;AACF;"}

package/dist/chunks/{tty-CDBIQraQ.js → tty-BMyaEOhX.js}

@@ -7,11 +7,11 @@ class TTYError extends Error {
 }
 function checkTTY() {
   if (!process.stdin.isTTY || !process.stdout.isTTY) {
-    throw new TTYError("Interactive mode requires a TTY");
+    throw new TTYError("TUI mode requires a TTY");
   }
 }
 export {
   TTYError,
   checkTTY
 };
-//# sourceMappingURL=tty-CDBIQraQ.js.map
+//# sourceMappingURL=tty-BMyaEOhX.js.map

package/dist/chunks/tty-BMyaEOhX.js.map

@@ -0,0 +1 @@
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