@ncukondo/reference-manager 0.12.3 → 0.13.1

package/dist/chunks/{loader-DVmjpU4U.js → loader-C1EpnyPm.js}

@@ -1,10 +1,11 @@
 import { spawn } from "node:child_process";
 import { existsSync, readFileSync } from "node:fs";
-import { homedir, tmpdir } from "node:os";
-import { join } from "node:path";
+import os__default, { homedir as homedir$1 } from "node:os";
+import path__default, { join } from "node:path";
 import { parse } from "@iarna/toml";
+import process$1 from "node:process";
 import { z } from "zod";
-import { q as sortOrderSchema, u as sortFieldSchema } from "./file-watcher-BhIAeC21.js";
+import { q as sortOrderSchema, u as sortFieldSchema } from "./file-watcher-D2Y-SlcE.js";
 function getOpenerCommand(platform) {
   switch (platform) {
     case "darwin":
@@ -340,23 +341,82 @@ function normalizeMcpConfig(mcp) {
   }
   return Object.keys(normalized).length > 0 ? normalized : void 0;
 }
+const homedir = os__default.homedir();
+const tmpdir = os__default.tmpdir();
+const { env } = process$1;
+const macos = (name) => {
+  const library = path__default.join(homedir, "Library");
+  return {
+    data: path__default.join(library, "Application Support", name),
+    config: path__default.join(library, "Preferences", name),
+    cache: path__default.join(library, "Caches", name),
+    log: path__default.join(library, "Logs", name),
+    temp: path__default.join(tmpdir, name)
+  };
+};
+const windows = (name) => {
+  const appData = env.APPDATA || path__default.join(homedir, "AppData", "Roaming");
+  const localAppData = env.LOCALAPPDATA || path__default.join(homedir, "AppData", "Local");
+  return {
+    // Data/config/cache/log are invented by me as Windows isn't opinionated about this
+    data: path__default.join(localAppData, name, "Data"),
+    config: path__default.join(appData, name, "Config"),
+    cache: path__default.join(localAppData, name, "Cache"),
+    log: path__default.join(localAppData, name, "Log"),
+    temp: path__default.join(tmpdir, name)
+  };
+};
+const linux = (name) => {
+  const username = path__default.basename(homedir);
+  return {
+    data: path__default.join(env.XDG_DATA_HOME || path__default.join(homedir, ".local", "share"), name),
+    config: path__default.join(env.XDG_CONFIG_HOME || path__default.join(homedir, ".config"), name),
+    cache: path__default.join(env.XDG_CACHE_HOME || path__default.join(homedir, ".cache"), name),
+    // https://wiki.debian.org/XDGBaseDirectorySpecification#state
+    log: path__default.join(env.XDG_STATE_HOME || path__default.join(homedir, ".local", "state"), name),
+    temp: path__default.join(tmpdir, username, name)
+  };
+};
+function envPaths(name, { suffix = "nodejs" } = {}) {
+  if (typeof name !== "string") {
+    throw new TypeError(`Expected a string, got ${typeof name}`);
+  }
+  if (suffix) {
+    name += `-${suffix}`;
+  }
+  if (process$1.platform === "darwin") {
+    return macos(name);
+  }
+  if (process$1.platform === "win32") {
+    return windows(name);
+  }
+  return linux(name);
+}
+const paths = envPaths("reference-manager", { suffix: "" });
+function getPaths() {
+  return {
+    config: paths.config,
+    data: paths.data,
+    cache: paths.cache
+  };
+}
 function getDefaultBackupDirectory() {
-  return join(tmpdir(), "reference-manager", "backups");
+  return join(getPaths().cache, "backups");
 }
 function getDefaultLibraryPath() {
-  return join(homedir(), ".reference-manager", "csl.library.json");
+  return join(getPaths().data, "library.json");
 }
 function getDefaultUserConfigPath() {
-  return join(homedir(), ".reference-manager", "config.toml");
+  return join(getPaths().config, "config.toml");
 }
 function getDefaultCurrentDirConfigFilename() {
   return ".reference-manager.config.toml";
 }
 function getDefaultCslDirectory() {
-  return join(homedir(), ".reference-manager", "csl");
+  return join(getPaths().data, "csl");
 }
 function getDefaultFulltextDirectory() {
-  return join(homedir(), ".reference-manager", "fulltext");
+  return join(getPaths().data, "fulltext");
 }
 const defaultConfig = {
   library: getDefaultLibraryPath(),
@@ -509,7 +569,7 @@ function fillPubmedDefaults(partial) {
 }
 function expandTilde(path) {
   if (path.startsWith("~/")) {
-    return join(homedir(), path.slice(2));
+    return join(homedir$1(), path.slice(2));
   }
   return path;
 }
@@ -586,4 +646,4 @@ export {
   partialConfigSchema as p,
   watchConfigSchema as w
 };
-//# sourceMappingURL=loader-DVmjpU4U.js.map
+//# sourceMappingURL=loader-C1EpnyPm.js.map

package/dist/chunks/loader-C1EpnyPm.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"loader-C1EpnyPm.js","sources":["../../src/utils/opener.ts","../../src/config/schema.ts","../../node_modules/env-paths/index.js","../../src/config/paths.ts","../../src/config/defaults.ts","../../src/config/loader.ts"],"sourcesContent":["import { type ChildProcess, spawn } from \"node:child_process\";\n\n/**\n * Get the system opener command for the specified platform.\n * @param platform - The platform (darwin, linux, win32)\n * @returns The command array to execute\n */\nexport function getOpenerCommand(platform: string): string[] {\n  switch (platform) {\n    case \"darwin\":\n      return [\"open\"];\n    case \"linux\":\n      return [\"xdg-open\"];\n    case \"win32\":\n      return [\"cmd\", \"/c\", \"start\", \"\"];\n    default:\n      throw new Error(`Unsupported platform: ${platform}`);\n  }\n}\n\n/**\n * Open a file with the system's default application.\n * @param filePath - The path to the file to open\n * @param platform - The platform (defaults to process.platform)\n */\nexport async function openWithSystemApp(\n  filePath: string,\n  platform: string = process.platform\n): Promise<void> {\n  const commandParts = getOpenerCommand(platform);\n  const [command, ...baseArgs] = commandParts;\n  const args = [...baseArgs, filePath];\n\n  return new Promise((resolve, reject) => {\n    const proc: ChildProcess = spawn(command as string, args, {\n      detached: true,\n      stdio: \"ignore\",\n    });\n\n    proc.on(\"error\", () => {\n      reject(new Error(`Failed to open file: ${filePath}`));\n    });\n\n    proc.on(\"close\", (code: number | null) => {\n      if (code === 0) {\n        resolve();\n      } else {\n        reject(new Error(`Failed to open file: ${filePath}`));\n      }\n    });\n\n    proc.unref();\n  });\n}\n","/**\n * Configuration schema using Zod\n */\n\nimport { z } from \"zod\";\nimport { sortFieldSchema, sortOrderSchema } from \"../features/pagination/types.js\";\n\n/**\n * Log level schema\n */\nexport const logLevelSchema = z.enum([\"silent\", \"info\", \"debug\"]);\n\n/**\n * Interactive search configuration schema\n */\nexport const interactiveConfigSchema = z.object({\n  limit: z.number().int().nonnegative(),\n  debounceMs: z.number().int().nonnegative(),\n});\n\n/**\n * Edit format schema\n */\nexport const editFormatSchema = z.enum([\"yaml\", \"json\"]);\n\n/**\n * Edit command configuration schema\n */\nexport const editConfigSchema = z.object({\n  defaultFormat: editFormatSchema,\n});\n\n/**\n * CLI configuration schema\n */\nexport const cliConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n  defaultSort: sortFieldSchema,\n  defaultOrder: sortOrderSchema,\n  interactive: interactiveConfigSchema,\n  edit: editConfigSchema,\n});\n\n/**\n * MCP configuration schema\n */\nexport const mcpConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n});\n\n/**\n * Backup configuration schema\n */\nexport const backupConfigSchema = z.object({\n  maxGenerations: z.number().int().positive(),\n  maxAgeDays: z.number().int().positive(),\n  directory: z.string().min(1),\n});\n\n/**\n * File watching configuration schema\n * Note: File watching is always enabled in server mode (HTTP/MCP).\n * CLI mode does not use file watching.\n */\nexport const watchConfigSchema = z.object({\n  debounceMs: z.number().int().nonnegative(),\n  pollIntervalMs: z.number().int().positive(),\n  retryIntervalMs: z.number().int().positive(),\n  maxRetries: z.number().int().nonnegative(),\n});\n\n/**\n * Server configuration schema\n */\nexport const serverConfigSchema = z.object({\n  autoStart: z.boolean(),\n  autoStopMinutes: z.number().int().nonnegative(),\n});\n\n/**\n * Citation format schema\n */\nexport const citationFormatSchema = z.enum([\"text\", \"html\", \"rtf\"]);\n\n/**\n * Citation configuration schema\n */\nexport const citationConfigSchema = z.object({\n  defaultStyle: z.string(),\n  cslDirectory: z.array(z.string()),\n  defaultLocale: z.string(),\n  defaultFormat: citationFormatSchema,\n});\n\n/**\n * PubMed API configuration schema\n */\nexport const pubmedConfigSchema = z.object({\n  email: z.string().optional(),\n  apiKey: z.string().optional(),\n});\n\n/**\n * Fulltext storage configuration schema\n */\nexport const fulltextConfigSchema = z.object({\n  directory: z.string().min(1),\n});\n\n/**\n * Complete configuration schema\n */\nexport const configSchema = z.object({\n  library: z.string().min(1),\n  logLevel: logLevelSchema,\n  backup: backupConfigSchema,\n  watch: watchConfigSchema,\n  server: serverConfigSchema,\n  citation: citationConfigSchema,\n  pubmed: pubmedConfigSchema,\n  fulltext: fulltextConfigSchema,\n  cli: cliConfigSchema,\n  mcp: mcpConfigSchema,\n});\n\n/**\n * Partial configuration schema (for TOML files)\n * Supports both camelCase and snake_case field names\n */\nexport const partialConfigSchema = z\n  .object({\n    library: z.string().min(1).optional(),\n    logLevel: logLevelSchema.optional(),\n    log_level: logLevelSchema.optional(), // snake_case support\n    backup: z\n      .object({\n        maxGenerations: z.number().int().positive().optional(),\n        max_generations: z.number().int().positive().optional(),\n        maxAgeDays: z.number().int().positive().optional(),\n        max_age_days: z.number().int().positive().optional(),\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    watch: z\n      .object({\n        debounceMs: z.number().int().nonnegative().optional(),\n        debounce_ms: z.number().int().nonnegative().optional(),\n        pollIntervalMs: z.number().int().positive().optional(),\n        poll_interval_ms: z.number().int().positive().optional(),\n        retryIntervalMs: z.number().int().positive().optional(),\n        retry_interval_ms: z.number().int().positive().optional(),\n        maxRetries: z.number().int().nonnegative().optional(),\n        max_retries: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    server: z\n      .object({\n        autoStart: z.boolean().optional(),\n        auto_start: z.boolean().optional(),\n        autoStopMinutes: z.number().int().nonnegative().optional(),\n        auto_stop_minutes: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    citation: z\n      .object({\n        defaultStyle: z.string().optional(),\n        default_style: z.string().optional(),\n        cslDirectory: z.union([z.string(), z.array(z.string())]).optional(),\n        csl_directory: z.union([z.string(), z.array(z.string())]).optional(),\n        defaultLocale: z.string().optional(),\n        default_locale: z.string().optional(),\n        defaultFormat: citationFormatSchema.optional(),\n        default_format: citationFormatSchema.optional(),\n      })\n      .optional(),\n    pubmed: z\n      .object({\n        email: z.string().optional(),\n        apiKey: z.string().optional(),\n        api_key: z.string().optional(),\n      })\n      .optional(),\n    fulltext: z\n      .object({\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    cli: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n        defaultSort: sortFieldSchema.optional(),\n        default_sort: sortFieldSchema.optional(),\n        defaultOrder: sortOrderSchema.optional(),\n        default_order: sortOrderSchema.optional(),\n        interactive: z\n          .object({\n            limit: z.number().int().nonnegative().optional(),\n            debounceMs: z.number().int().nonnegative().optional(),\n            debounce_ms: z.number().int().nonnegative().optional(),\n          })\n          .optional(),\n        edit: z\n          .object({\n            defaultFormat: editFormatSchema.optional(),\n            default_format: editFormatSchema.optional(),\n          })\n          .optional(),\n      })\n      .optional(),\n    mcp: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n  })\n  .passthrough(); // Allow unknown fields in TOML files\n\n/**\n * Inferred types from schemas\n */\nexport type LogLevel = z.infer<typeof logLevelSchema>;\nexport type BackupConfig = z.infer<typeof backupConfigSchema>;\nexport type WatchConfig = z.infer<typeof watchConfigSchema>;\nexport type ServerConfig = z.infer<typeof serverConfigSchema>;\nexport type CitationFormat = z.infer<typeof citationFormatSchema>;\nexport type CitationConfig = z.infer<typeof citationConfigSchema>;\nexport type PubmedConfig = z.infer<typeof pubmedConfigSchema>;\nexport type FulltextConfig = z.infer<typeof fulltextConfigSchema>;\nexport type InteractiveConfig = z.infer<typeof interactiveConfigSchema>;\nexport type EditConfigFormat = z.infer<typeof editFormatSchema>;\nexport type EditConfig = z.infer<typeof editConfigSchema>;\nexport type CliConfig = z.infer<typeof cliConfigSchema>;\nexport type McpConfig = z.infer<typeof mcpConfigSchema>;\nexport type Config = z.infer<typeof configSchema>;\nexport type PartialConfig = z.infer<typeof partialConfigSchema>;\n\n/**\n * Deep partial type for Config\n */\nexport type DeepPartialConfig = {\n  library?: string;\n  logLevel?: LogLevel;\n  backup?: Partial<BackupConfig>;\n  watch?: Partial<WatchConfig>;\n  server?: Partial<ServerConfig>;\n  citation?: Partial<CitationConfig>;\n  pubmed?: Partial<PubmedConfig>;\n  fulltext?: Partial<FulltextConfig>;\n  cli?: Partial<Omit<CliConfig, \"interactive\" | \"edit\">> & {\n    interactive?: Partial<InteractiveConfig>;\n    edit?: Partial<EditConfig>;\n  };\n  mcp?: Partial<McpConfig>;\n};\n\n/**\n * Normalize backup configuration from snake_case to camelCase\n */\nfunction normalizeBackupConfig(\n  backup: Partial<{\n    maxGenerations?: number;\n    max_generations?: number;\n    maxAgeDays?: number;\n    max_age_days?: number;\n    directory?: string;\n  }>\n): Partial<BackupConfig> | undefined {\n  const normalized: Partial<BackupConfig> = {};\n\n  const maxGenerations = backup.maxGenerations ?? backup.max_generations;\n  if (maxGenerations !== undefined) {\n    normalized.maxGenerations = maxGenerations;\n  }\n\n  const maxAgeDays = backup.maxAgeDays ?? backup.max_age_days;\n  if (maxAgeDays !== undefined) {\n    normalized.maxAgeDays = maxAgeDays;\n  }\n\n  if (backup.directory !== undefined) {\n    normalized.directory = backup.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize watch configuration from snake_case to camelCase\n */\nfunction normalizeWatchConfig(\n  watch: Partial<{\n    debounceMs?: number;\n    debounce_ms?: number;\n    pollIntervalMs?: number;\n    poll_interval_ms?: number;\n    retryIntervalMs?: number;\n    retry_interval_ms?: number;\n    maxRetries?: number;\n    max_retries?: number;\n  }>\n): Partial<WatchConfig> | undefined {\n  const normalized: Partial<WatchConfig> = {};\n\n  const debounceMs = watch.debounceMs ?? watch.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n\n  const pollIntervalMs = watch.pollIntervalMs ?? watch.poll_interval_ms;\n  if (pollIntervalMs !== undefined) {\n    normalized.pollIntervalMs = pollIntervalMs;\n  }\n\n  const retryIntervalMs = watch.retryIntervalMs ?? watch.retry_interval_ms;\n  if (retryIntervalMs !== undefined) {\n    normalized.retryIntervalMs = retryIntervalMs;\n  }\n\n  const maxRetries = watch.maxRetries ?? watch.max_retries;\n  if (maxRetries !== undefined) {\n    normalized.maxRetries = maxRetries;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize server configuration from snake_case to camelCase\n */\nfunction normalizeServerConfig(\n  server: Partial<{\n    autoStart?: boolean;\n    auto_start?: boolean;\n    autoStopMinutes?: number;\n    auto_stop_minutes?: number;\n  }>\n): Partial<ServerConfig> | undefined {\n  const normalized: Partial<ServerConfig> = {};\n\n  const autoStart = server.autoStart ?? server.auto_start;\n  if (autoStart !== undefined) {\n    normalized.autoStart = autoStart;\n  }\n\n  const autoStopMinutes = server.autoStopMinutes ?? server.auto_stop_minutes;\n  if (autoStopMinutes !== undefined) {\n    normalized.autoStopMinutes = autoStopMinutes;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize citation configuration from snake_case to camelCase\n */\nfunction normalizeCitationConfig(\n  citation: Partial<{\n    defaultStyle?: string;\n    default_style?: string;\n    cslDirectory?: string | string[];\n    csl_directory?: string | string[];\n    defaultLocale?: string;\n    default_locale?: string;\n    defaultFormat?: CitationFormat;\n    default_format?: CitationFormat;\n  }>\n): Partial<CitationConfig> | undefined {\n  const normalized: Partial<CitationConfig> = {};\n\n  const defaultStyle = citation.defaultStyle ?? citation.default_style;\n  if (defaultStyle !== undefined) {\n    normalized.defaultStyle = defaultStyle;\n  }\n\n  const cslDirectory = citation.cslDirectory ?? citation.csl_directory;\n  if (cslDirectory !== undefined) {\n    // Normalize to array: string -> [string]\n    normalized.cslDirectory = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];\n  }\n\n  const defaultLocale = citation.defaultLocale ?? citation.default_locale;\n  if (defaultLocale !== undefined) {\n    normalized.defaultLocale = defaultLocale;\n  }\n\n  const defaultFormat = citation.defaultFormat ?? citation.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize pubmed configuration from snake_case to camelCase\n */\nfunction normalizePubmedConfig(\n  pubmed: Partial<{\n    email?: string;\n    apiKey?: string;\n    api_key?: string;\n  }>\n): Partial<PubmedConfig> | undefined {\n  const normalized: Partial<PubmedConfig> = {};\n\n  if (pubmed.email !== undefined) {\n    normalized.email = pubmed.email;\n  }\n\n  const apiKey = pubmed.apiKey ?? pubmed.api_key;\n  if (apiKey !== undefined) {\n    normalized.apiKey = apiKey;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Section normalizers mapping\n */\nconst sectionNormalizers = {\n  backup: normalizeBackupConfig,\n  watch: normalizeWatchConfig,\n  server: normalizeServerConfig,\n  citation: normalizeCitationConfig,\n  pubmed: normalizePubmedConfig,\n  fulltext: normalizeFulltextConfig,\n  cli: normalizeCliConfig,\n  mcp: normalizeMcpConfig,\n} as const;\n\ntype SectionKey = keyof typeof sectionNormalizers;\n\n/**\n * Helper to apply a normalizer function to a config section\n */\nfunction applyNormalizer<K extends SectionKey>(\n  normalized: DeepPartialConfig,\n  partial: PartialConfig,\n  key: K,\n  normalizer: (typeof sectionNormalizers)[K]\n): void {\n  const value = partial[key];\n  if (value !== undefined) {\n    const result = (normalizer as (input: unknown) => DeepPartialConfig[K] | undefined)(value);\n    if (result) {\n      normalized[key] = result;\n    }\n  }\n}\n\n/**\n * Normalize snake_case fields to camelCase\n */\nexport function normalizePartialConfig(partial: PartialConfig): DeepPartialConfig {\n  const normalized: DeepPartialConfig = {};\n\n  // Simple fields\n  if (partial.library !== undefined) {\n    normalized.library = partial.library;\n  }\n  const logLevel = partial.logLevel ?? partial.log_level;\n  if (logLevel !== undefined) {\n    normalized.logLevel = logLevel;\n  }\n\n  // Section fields\n  for (const key of Object.keys(sectionNormalizers) as SectionKey[]) {\n    applyNormalizer(normalized, partial, key, sectionNormalizers[key]);\n  }\n\n  return normalized;\n}\n\n/**\n * Normalize fulltext configuration\n */\nfunction normalizeFulltextConfig(fulltext: {\n  directory?: string | undefined;\n}): Partial<FulltextConfig> | undefined {\n  const normalized: Partial<FulltextConfig> = {};\n\n  if (fulltext.directory !== undefined) {\n    normalized.directory = fulltext.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize interactive config subsection\n */\nfunction normalizeInteractiveSection(\n  interactive: Partial<{\n    limit?: number;\n    debounceMs?: number;\n    debounce_ms?: number;\n  }>\n): Partial<InteractiveConfig> | undefined {\n  const normalized: Partial<InteractiveConfig> = {};\n  if (interactive.limit !== undefined) {\n    normalized.limit = interactive.limit;\n  }\n  const debounceMs = interactive.debounceMs ?? interactive.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize edit config subsection\n */\nfunction normalizeEditSection(\n  edit: Partial<{\n    defaultFormat?: EditConfigFormat;\n    default_format?: EditConfigFormat;\n  }>\n): Partial<EditConfig> | undefined {\n  const normalized: Partial<EditConfig> = {};\n  const defaultFormat = edit.defaultFormat ?? edit.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize CLI configuration from snake_case to camelCase\n */\nfunction normalizeCliConfig(\n  cli: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n    defaultSort?: CliConfig[\"defaultSort\"];\n    default_sort?: CliConfig[\"defaultSort\"];\n    defaultOrder?: CliConfig[\"defaultOrder\"];\n    default_order?: CliConfig[\"defaultOrder\"];\n    interactive?: Partial<{\n      limit?: number;\n      debounceMs?: number;\n      debounce_ms?: number;\n    }>;\n    edit?: Partial<{\n      defaultFormat?: EditConfigFormat;\n      default_format?: EditConfigFormat;\n    }>;\n  }>\n): Partial<CliConfig> | undefined {\n  const normalized: Partial<CliConfig> = {};\n\n  const defaultLimit = cli.defaultLimit ?? cli.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  const defaultSort = cli.defaultSort ?? cli.default_sort;\n  if (defaultSort !== undefined) {\n    normalized.defaultSort = defaultSort;\n  }\n\n  const defaultOrder = cli.defaultOrder ?? cli.default_order;\n  if (defaultOrder !== undefined) {\n    normalized.defaultOrder = defaultOrder;\n  }\n\n  if (cli.interactive !== undefined) {\n    const interactive = normalizeInteractiveSection(cli.interactive);\n    if (interactive) {\n      normalized.interactive = interactive as InteractiveConfig;\n    }\n  }\n\n  if (cli.edit !== undefined) {\n    const edit = normalizeEditSection(cli.edit);\n    if (edit) {\n      normalized.edit = edit as EditConfig;\n    }\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize MCP configuration from snake_case to camelCase\n */\nfunction normalizeMcpConfig(\n  mcp: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n  }>\n): Partial<McpConfig> | undefined {\n  const normalized: Partial<McpConfig> = {};\n\n  const defaultLimit = mcp.defaultLimit ?? mcp.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n","import path from 'node:path';\nimport os from 'node:os';\nimport process from 'node:process';\n\nconst homedir = os.homedir();\nconst tmpdir = os.tmpdir();\nconst {env} = process;\n\nconst macos = name => {\n\tconst library = path.join(homedir, 'Library');\n\n\treturn {\n\t\tdata: path.join(library, 'Application Support', name),\n\t\tconfig: path.join(library, 'Preferences', name),\n\t\tcache: path.join(library, 'Caches', name),\n\t\tlog: path.join(library, 'Logs', name),\n\t\ttemp: path.join(tmpdir, name),\n\t};\n};\n\nconst windows = name => {\n\tconst appData = env.APPDATA || path.join(homedir, 'AppData', 'Roaming');\n\tconst localAppData = env.LOCALAPPDATA || path.join(homedir, 'AppData', 'Local');\n\n\treturn {\n\t\t// Data/config/cache/log are invented by me as Windows isn't opinionated about this\n\t\tdata: path.join(localAppData, name, 'Data'),\n\t\tconfig: path.join(appData, name, 'Config'),\n\t\tcache: path.join(localAppData, name, 'Cache'),\n\t\tlog: path.join(localAppData, name, 'Log'),\n\t\ttemp: path.join(tmpdir, name),\n\t};\n};\n\n// https://specifications.freedesktop.org/basedir-spec/basedir-spec-latest.html\nconst linux = name => {\n\tconst username = path.basename(homedir);\n\n\treturn {\n\t\tdata: path.join(env.XDG_DATA_HOME || path.join(homedir, '.local', 'share'), 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package/dist/cli.js

@@ -1,8 +1,8 @@
 import "commander";
 import "zod";
-import { c, m } from "./chunks/index-uiCqx7-V.js";
-import "./chunks/file-watcher-BhIAeC21.js";
-import "./chunks/index-vL26PhAf.js";
+import { c, m } from "./chunks/index-BKjNukRE.js";
+import "./chunks/file-watcher-D2Y-SlcE.js";
+import "./chunks/index-C0TB_ha0.js";
 export {
   c as createProgram,
   m as main

package/dist/config/defaults.d.ts

@@ -4,17 +4,17 @@
 import type { Config } from "./schema.js";
 /**
  * Get the default backup directory
- * Uses $TMPDIR/reference-manager/backups/
+ * Uses platform-specific cache path + backups/
  */
 export declare function getDefaultBackupDirectory(): string;
 /**
  * Get the default library path
- * Uses ~/.reference-manager/csl.library.json
+ * Uses platform-specific data path + library.json
  */
 export declare function getDefaultLibraryPath(): string;
 /**
  * Get the default user config path
- * Uses ~/.reference-manager/config.toml
+ * Uses platform-specific config path + config.toml
  */
 export declare function getDefaultUserConfigPath(): string;
 /**
@@ -24,12 +24,12 @@ export declare function getDefaultUserConfigPath(): string;
 export declare function getDefaultCurrentDirConfigFilename(): string;
 /**
  * Get the default CSL directory
- * Uses ~/.reference-manager/csl/
+ * Uses platform-specific data path + csl/
  */
 export declare function getDefaultCslDirectory(): string;
 /**
  * Get the default fulltext directory
- * Uses ~/.reference-manager/fulltext/
+ * Uses platform-specific data path + fulltext/
  */
 export declare function getDefaultFulltextDirectory(): string;
 /**

package/dist/config/defaults.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE1C;;;GAGG;AACH,wBAAgB,yBAAyB,IAAI,MAAM,CAElD;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,IAAI,MAAM,CAE9C;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,MAAM,CAEjD;AAED;;;GAGG;AACH,wBAAgB,kCAAkC,IAAI,MAAM,CAE3D;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,IAAI,MAAM,CAE/C;AAED;;;GAGG;AACH,wBAAgB,2BAA2B,IAAI,MAAM,CAEpD;AAED;;GAEG;AACH,eAAO,MAAM,aAAa,EAAE,MA8C3B,CAAC"}
+{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAIH,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE1C;;;GAGG;AACH,wBAAgB,yBAAyB,IAAI,MAAM,CAElD;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,IAAI,MAAM,CAE9C;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,MAAM,CAEjD;AAED;;;GAGG;AACH,wBAAgB,kCAAkC,IAAI,MAAM,CAE3D;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,IAAI,MAAM,CAE/C;AAED;;;GAGG;AACH,wBAAgB,2BAA2B,IAAI,MAAM,CAEpD;AAED;;GAEG;AACH,eAAO,MAAM,aAAa,EAAE,MA8C3B,CAAC"}

package/dist/config/paths.d.ts

@@ -0,0 +1,19 @@
+/**
+ * Platform-specific paths using env-paths
+ *
+ * Returns XDG-compliant paths on Linux, standard paths on macOS/Windows
+ */
+export interface Paths {
+    config: string;
+    data: string;
+    cache: string;
+}
+/**
+ * Get platform-specific paths for config, data, and cache directories
+ *
+ * - Linux: XDG Base Directory Specification (~/.config, ~/.local/share, ~/.cache)
+ * - macOS: ~/Library/Preferences, ~/Library/Application Support, ~/Library/Caches
+ * - Windows: %APPDATA%, %LOCALAPPDATA%
+ */
+export declare function getPaths(): Paths;
+//# sourceMappingURL=paths.d.ts.map

package/dist/config/paths.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"paths.d.ts","sourceRoot":"","sources":["../../src/config/paths.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAMH,MAAM,WAAW,KAAK;IACpB,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;GAMG;AACH,wBAAgB,QAAQ,IAAI,KAAK,CAMhC"}

package/dist/core/csl-json/types.d.ts

@@ -1,8 +1,8 @@
 import { z } from "zod";
 declare const CslCustomSchema: z.ZodObject<{
-    uuid: z.ZodString;
-    created_at: z.ZodString;
-    timestamp: z.ZodString;
+    uuid: z.ZodOptional<z.ZodString>;
+    created_at: z.ZodOptional<z.ZodString>;
+    timestamp: z.ZodOptional<z.ZodString>;
     additional_urls: z.ZodOptional<z.ZodArray<z.ZodString>>;
     fulltext: z.ZodOptional<z.ZodObject<{
         pdf: z.ZodOptional<z.ZodString>;
@@ -60,9 +60,9 @@ export declare const CslItemSchema: z.ZodObject<{
     note: z.ZodOptional<z.ZodString>;
     keyword: z.ZodOptional<z.ZodArray<z.ZodString>>;
     custom: z.ZodOptional<z.ZodObject<{
-        uuid: z.ZodString;
-        created_at: z.ZodString;
-        timestamp: z.ZodString;
+        uuid: z.ZodOptional<z.ZodString>;
+        created_at: z.ZodOptional<z.ZodString>;
+        timestamp: z.ZodOptional<z.ZodString>;
         additional_urls: z.ZodOptional<z.ZodArray<z.ZodString>>;
         fulltext: z.ZodOptional<z.ZodObject<{
             pdf: z.ZodOptional<z.ZodString>;
@@ -121,9 +121,9 @@ export declare const CslLibrarySchema: z.ZodArray<z.ZodObject<{
     note: z.ZodOptional<z.ZodString>;
     keyword: z.ZodOptional<z.ZodArray<z.ZodString>>;
     custom: z.ZodOptional<z.ZodObject<{
-        uuid: z.ZodString;
-        created_at: z.ZodString;
-        timestamp: z.ZodString;
+        uuid: z.ZodOptional<z.ZodString>;
+        created_at: z.ZodOptional<z.ZodString>;
+        timestamp: z.ZodOptional<z.ZodString>;
         additional_urls: z.ZodOptional<z.ZodArray<z.ZodString>>;
         fulltext: z.ZodOptional<z.ZodObject<{
             pdf: z.ZodOptional<z.ZodString>;

package/dist/core/csl-json/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/core/csl-json/types.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA4BxB,QAAA,MAAM,eAAe;;;;;;;;;;iBASL,CAAC;AAGjB,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBA2BV,CAAC;AAGjB,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAAyB,CAAC;AAEvD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,aAAa,CAAC,CAAC;AACpD,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/core/csl-json/types.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA+BxB,QAAA,MAAM,eAAe;;;;;;;;;;iBASL,CAAC;AAGjB,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBA2BV,CAAC;AAGjB,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAAyB,CAAC;AAEvD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,aAAa,CAAC,CAAC;AACpD,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC"}

package/dist/features/format/citation-csl.d.ts

@@ -9,6 +9,11 @@ export type CitationFormatOptions = {
      * @default 'apa'
      */
     style?: string;
+    /**
+     * Custom CSL style XML content.
+     * When provided, this XML is registered and used instead of built-in styles.
+     */
+    styleXml?: string;
     /**
      * Output format: text, html, or rtf
      * @default 'text'

package/dist/features/format/citation-csl.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"citation-csl.d.ts","sourceRoot":"","sources":["../../../src/features/format/citation-csl.ts"],"names":[],"mappings":"AACA,OAAO,yBAAyB,CAAC;AACjC,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAG5D;;GAEG;AACH,MAAM,MAAM,qBAAqB,GAAG;IAClC;;;OAGG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IAEf;;;OAGG;IACH,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;IAEjC;;;OAGG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF;;;;;;;GAOG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,qBAAqB,GAAG,MAAM,CA+B9F;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,qBAAqB,GAAG,MAAM,CA+BxF"}
+{"version":3,"file":"citation-csl.d.ts","sourceRoot":"","sources":["../../../src/features/format/citation-csl.ts"],"names":[],"mappings":"AACA,OAAO,yBAAyB,CAAC;AACjC,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAG5D;;GAEG;AACH,MAAM,MAAM,qBAAqB,GAAG;IAClC;;;OAGG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IAEf;;;OAGG;IACH,QAAQ,CAAC,EAAE,MAAM,CAAC;IAElB;;;OAGG;IACH,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;IAEjC;;;OAGG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,CAAC;AAmCF;;;;;;;GAOG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,qBAAqB,GAAG,MAAM,CAoC9F;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,qBAAqB,GAAG,MAAM,CAoCxF"}

package/dist/features/operations/cite.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cite.d.ts","sourceRoot":"","sources":["../../../src/features/operations/cite.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAQhF;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,qCAAqC;IACrC,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,wEAAwE;IACxE,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,yCAAyC;IACzC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,8BAA8B;IAC9B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,wDAAwD;IACxD,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,sCAAsC;IACtC,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;IACjC,iEAAiE;IACjE,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,MAAM,cAAc,GACtB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,GACvD;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAE1D;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,kCAAkC;IAClC,OAAO,EAAE,cAAc,EAAE,CAAC;CAC3B;AAsED;;;;;;GAMG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,UAAU,CAAC,CAerB"}
+{"version":3,"file":"cite.d.ts","sourceRoot":"","sources":["../../../src/features/operations/cite.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAQhF;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,qCAAqC;IACrC,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,wEAAwE;IACxE,MAAM,CAAC,EAAE,cAAc,CAAC;IACxB,yCAAyC;IACzC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,8BAA8B;IAC9B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,wDAAwD;IACxD,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,sCAAsC;IACtC,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,KAAK,CAAC;IACjC,iEAAiE;IACjE,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,MAAM,cAAc,GACtB;IAAE,OAAO,EAAE,IAAI,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,GACvD;IAAE,OAAO,EAAE,KAAK,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAE1D;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,kCAAkC;IAClC,OAAO,EAAE,cAAc,EAAE,CAAC;CAC3B;AAwED;;;;;;GAMG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE,QAAQ,EACjB,OAAO,EAAE,oBAAoB,GAC5B,OAAO,CAAC,UAAU,CAAC,CAyBrB"}

package/dist/index.js

@@ -1,12 +1,12 @@
-import { C as CslLibrarySchema, c as computeFileHash, a as computeHash, p as pickDefined, n as normalize, s as search, b as sortResults, t as tokenize, d as detectDuplicate } from "./chunks/file-watcher-BhIAeC21.js";
-import { e, F, L, R, m, o, h, i, k, l, j, f, g, w } from "./chunks/file-watcher-BhIAeC21.js";
+import { C as CslLibrarySchema, c as computeFileHash, a as computeHash, p as pickDefined, n as normalize, s as search, b as sortResults, t as tokenize, d as detectDuplicate } from "./chunks/file-watcher-D2Y-SlcE.js";
+import { e, F, L, R, m, o, h, i, k, l, j, f, g, w } from "./chunks/file-watcher-D2Y-SlcE.js";
 import { mkdir, readFile, copyFile, stat, unlink, readdir } from "node:fs/promises";
 import { dirname, join } from "node:path";
 import writeFileAtomicLib from "write-file-atomic";
 import { existsSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { fileURLToPath } from "node:url";
-import { g as getOpenerCommand, o as openWithSystemApp, b as backupConfigSchema, c as configSchema, d as defaultConfig, a as getDefaultBackupDirectory, e as getDefaultCurrentDirConfigFilename, f as getDefaultLibraryPath, h as getDefaultUserConfigPath, l as loadConfig, i as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-DVmjpU4U.js";
+import { g as getOpenerCommand, o as openWithSystemApp, b as backupConfigSchema, c as configSchema, d as defaultConfig, a as getDefaultBackupDirectory, e as getDefaultCurrentDirConfigFilename, f as getDefaultLibraryPath, h as getDefaultUserConfigPath, l as loadConfig, i as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-C1EpnyPm.js";
 function validateCslJson(data) {
   const parseResult = CslLibrarySchema.safeParse(data);
   if (!parseResult.success) {

package/dist/server.js

@@ -1,6 +1,6 @@
 import "hono";
-import "./chunks/file-watcher-BhIAeC21.js";
-import { c, s } from "./chunks/index-vL26PhAf.js";
+import "./chunks/file-watcher-D2Y-SlcE.js";
+import { c, s } from "./chunks/index-C0TB_ha0.js";
 export {
   c as createServer,
   s as startServerWithFileWatcher

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ncukondo/reference-manager",
-  "version": "0.12.3",
+  "version": "0.13.1",
   "description": "A local reference management tool using CSL-JSON as the single source of truth",
   "publishConfig": {
     "access": "public"
@@ -40,7 +40,8 @@
     "lint:fix": "biome check --write .",
     "format": "biome format --write .",
     "typecheck": "tsc --noEmit",
-    "prepublishOnly": "npm run build"
+    "prepublishOnly": "npm run build",
+    "prepare": "husky"
   },
   "dependencies": {
     "@citation-js/core": "^0.7.16",
@@ -54,6 +55,7 @@
     "chokidar": "^5.0.0",
     "commander": "^12.1.0",
     "enquirer": "^2.4.1",
+    "env-paths": "^3.0.0",
     "hono": "^4.11.1",
     "js-yaml": "^4.1.1",
     "tabtab": "^3.0.2",
@@ -70,6 +72,8 @@
     "@types/tabtab": "^3.0.4",
     "@types/write-file-atomic": "^4.0.3",
     "@vitest/coverage-v8": "^2.1.9",
+    "husky": "^9.1.7",
+    "lint-staged": "^16.2.7",
     "typescript": "^5.6.0",
     "vite": "^6.0.0",
     "vite-node": "^2.1.0",
@@ -87,5 +91,10 @@
   "repository": {
     "type": "git",
     "url": "https://github.com/ncukondo/reference-manager.git"
+  },
+  "lint-staged": {
+    "*.{ts,tsx,js,jsx}": [
+      "biome check --write"
+    ]
   }
 }