@ncukondo/reference-manager 0.11.0 → 0.12.0

package/dist/chunks/{loader-B-qMK5su.js → loader-COOFA-HF.js}

@@ -44,11 +44,16 @@ const interactiveConfigSchema = z.object({
   limit: z.number().int().nonnegative(),
   debounceMs: z.number().int().nonnegative()
 });
+const editFormatSchema = z.enum(["yaml", "json"]);
+const editConfigSchema = z.object({
+  defaultFormat: editFormatSchema
+});
 const cliConfigSchema = z.object({
   defaultLimit: z.number().int().nonnegative(),
   defaultSort: sortFieldSchema,
   defaultOrder: sortOrderSchema,
-  interactive: interactiveConfigSchema
+  interactive: interactiveConfigSchema,
+  edit: editConfigSchema
 });
 const mcpConfigSchema = z.object({
   defaultLimit: z.number().int().nonnegative()
@@ -151,6 +156,10 @@ const partialConfigSchema = z.object({
       limit: z.number().int().nonnegative().optional(),
       debounceMs: z.number().int().nonnegative().optional(),
       debounce_ms: z.number().int().nonnegative().optional()
+    }).optional(),
+    edit: z.object({
+      defaultFormat: editFormatSchema.optional(),
+      default_format: editFormatSchema.optional()
     }).optional()
   }).optional(),
   mcp: z.object({
@@ -276,6 +285,25 @@ function normalizeFulltextConfig(fulltext) {
   }
   return Object.keys(normalized).length > 0 ? normalized : void 0;
 }
+function normalizeInteractiveSection(interactive) {
+  const normalized = {};
+  if (interactive.limit !== void 0) {
+    normalized.limit = interactive.limit;
+  }
+  const debounceMs = interactive.debounceMs ?? interactive.debounce_ms;
+  if (debounceMs !== void 0) {
+    normalized.debounceMs = debounceMs;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizeEditSection(edit) {
+  const normalized = {};
+  const defaultFormat = edit.defaultFormat ?? edit.default_format;
+  if (defaultFormat !== void 0) {
+    normalized.defaultFormat = defaultFormat;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
 function normalizeCliConfig(cli) {
   const normalized = {};
   const defaultLimit = cli.defaultLimit ?? cli.default_limit;
@@ -291,18 +319,17 @@ function normalizeCliConfig(cli) {
     normalized.defaultOrder = defaultOrder;
   }
   if (cli.interactive !== void 0) {
-    const interactive = {};
-    if (cli.interactive.limit !== void 0) {
-      interactive.limit = cli.interactive.limit;
-    }
-    const debounceMs = cli.interactive.debounceMs ?? cli.interactive.debounce_ms;
-    if (debounceMs !== void 0) {
-      interactive.debounceMs = debounceMs;
-    }
-    if (Object.keys(interactive).length > 0) {
+    const interactive = normalizeInteractiveSection(cli.interactive);
+    if (interactive) {
       normalized.interactive = interactive;
     }
   }
+  if (cli.edit !== void 0) {
+    const edit = normalizeEditSection(cli.edit);
+    if (edit) {
+      normalized.edit = edit;
+    }
+  }
   return Object.keys(normalized).length > 0 ? normalized : void 0;
 }
 function normalizeMcpConfig(mcp) {
@@ -369,6 +396,9 @@ const defaultConfig = {
     interactive: {
       limit: 20,
       debounceMs: 200
+    },
+    edit: {
+      defaultFormat: "yaml"
     }
   },
   mcp: {
@@ -498,6 +528,9 @@ function fillCliDefaults(partial) {
     interactive: {
       limit: partial?.interactive?.limit ?? defaultConfig.cli.interactive.limit,
       debounceMs: partial?.interactive?.debounceMs ?? defaultConfig.cli.interactive.debounceMs
+    },
+    edit: {
+      defaultFormat: partial?.edit?.defaultFormat ?? defaultConfig.cli.edit.defaultFormat
     }
   };
 }
@@ -551,4 +584,4 @@ export {
   partialConfigSchema as p,
   watchConfigSchema as w
 };
-//# sourceMappingURL=loader-B-qMK5su.js.map
+//# sourceMappingURL=loader-COOFA-HF.js.map

package/dist/chunks/loader-COOFA-HF.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"loader-COOFA-HF.js","sources":["../../src/utils/opener.ts","../../src/config/schema.ts","../../src/config/defaults.ts","../../src/config/loader.ts"],"sourcesContent":["import { type ChildProcess, spawn } from \"node:child_process\";\n\n/**\n * Get the system opener command for the specified platform.\n * @param platform - The platform (darwin, linux, win32)\n * @returns The command array to execute\n */\nexport function getOpenerCommand(platform: string): string[] {\n  switch (platform) {\n    case \"darwin\":\n      return [\"open\"];\n    case \"linux\":\n      return [\"xdg-open\"];\n    case \"win32\":\n      return [\"cmd\", \"/c\", \"start\", \"\"];\n    default:\n      throw new Error(`Unsupported platform: ${platform}`);\n  }\n}\n\n/**\n * Open a file with the system's default application.\n * @param filePath - The path to the file to open\n * @param platform - The platform (defaults to process.platform)\n */\nexport async function openWithSystemApp(\n  filePath: string,\n  platform: string = process.platform\n): Promise<void> {\n  const commandParts = getOpenerCommand(platform);\n  const [command, ...baseArgs] = commandParts;\n  const args = [...baseArgs, filePath];\n\n  return new Promise((resolve, reject) => {\n    const proc: ChildProcess = spawn(command as string, args, {\n      detached: true,\n      stdio: \"ignore\",\n    });\n\n    proc.on(\"error\", () => {\n      reject(new Error(`Failed to open file: ${filePath}`));\n    });\n\n    proc.on(\"close\", (code: number | null) => {\n      if (code === 0) {\n        resolve();\n      } else {\n        reject(new Error(`Failed to open file: ${filePath}`));\n      }\n    });\n\n    proc.unref();\n  });\n}\n","/**\n * Configuration schema using Zod\n */\n\nimport { z } from \"zod\";\nimport { sortFieldSchema, sortOrderSchema } from \"../features/pagination/types.js\";\n\n/**\n * Log level schema\n */\nexport const logLevelSchema = z.enum([\"silent\", \"info\", \"debug\"]);\n\n/**\n * Interactive search configuration schema\n */\nexport const interactiveConfigSchema = z.object({\n  limit: z.number().int().nonnegative(),\n  debounceMs: z.number().int().nonnegative(),\n});\n\n/**\n * Edit format schema\n */\nexport const editFormatSchema = z.enum([\"yaml\", \"json\"]);\n\n/**\n * Edit command configuration schema\n */\nexport const editConfigSchema = z.object({\n  defaultFormat: editFormatSchema,\n});\n\n/**\n * CLI configuration schema\n */\nexport const cliConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n  defaultSort: sortFieldSchema,\n  defaultOrder: sortOrderSchema,\n  interactive: interactiveConfigSchema,\n  edit: editConfigSchema,\n});\n\n/**\n * MCP configuration schema\n */\nexport const mcpConfigSchema = z.object({\n  defaultLimit: z.number().int().nonnegative(),\n});\n\n/**\n * Backup configuration schema\n */\nexport const backupConfigSchema = z.object({\n  maxGenerations: z.number().int().positive(),\n  maxAgeDays: z.number().int().positive(),\n  directory: z.string().min(1),\n});\n\n/**\n * File watching configuration schema\n * Note: File watching is always enabled in server mode (HTTP/MCP).\n * CLI mode does not use file watching.\n */\nexport const watchConfigSchema = z.object({\n  debounceMs: z.number().int().nonnegative(),\n  pollIntervalMs: z.number().int().positive(),\n  retryIntervalMs: z.number().int().positive(),\n  maxRetries: z.number().int().nonnegative(),\n});\n\n/**\n * Server configuration schema\n */\nexport const serverConfigSchema = z.object({\n  autoStart: z.boolean(),\n  autoStopMinutes: z.number().int().nonnegative(),\n});\n\n/**\n * Citation format schema\n */\nexport const citationFormatSchema = z.enum([\"text\", \"html\", \"rtf\"]);\n\n/**\n * Citation configuration schema\n */\nexport const citationConfigSchema = z.object({\n  defaultStyle: z.string(),\n  cslDirectory: z.array(z.string()),\n  defaultLocale: z.string(),\n  defaultFormat: citationFormatSchema,\n});\n\n/**\n * PubMed API configuration schema\n */\nexport const pubmedConfigSchema = z.object({\n  email: z.string().optional(),\n  apiKey: z.string().optional(),\n});\n\n/**\n * Fulltext storage configuration schema\n */\nexport const fulltextConfigSchema = z.object({\n  directory: z.string().min(1),\n});\n\n/**\n * Complete configuration schema\n */\nexport const configSchema = z.object({\n  library: z.string().min(1),\n  logLevel: logLevelSchema,\n  backup: backupConfigSchema,\n  watch: watchConfigSchema,\n  server: serverConfigSchema,\n  citation: citationConfigSchema,\n  pubmed: pubmedConfigSchema,\n  fulltext: fulltextConfigSchema,\n  cli: cliConfigSchema,\n  mcp: mcpConfigSchema,\n});\n\n/**\n * Partial configuration schema (for TOML files)\n * Supports both camelCase and snake_case field names\n */\nexport const partialConfigSchema = z\n  .object({\n    library: z.string().min(1).optional(),\n    logLevel: logLevelSchema.optional(),\n    log_level: logLevelSchema.optional(), // snake_case support\n    backup: z\n      .object({\n        maxGenerations: z.number().int().positive().optional(),\n        max_generations: z.number().int().positive().optional(),\n        maxAgeDays: z.number().int().positive().optional(),\n        max_age_days: z.number().int().positive().optional(),\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    watch: z\n      .object({\n        debounceMs: z.number().int().nonnegative().optional(),\n        debounce_ms: z.number().int().nonnegative().optional(),\n        pollIntervalMs: z.number().int().positive().optional(),\n        poll_interval_ms: z.number().int().positive().optional(),\n        retryIntervalMs: z.number().int().positive().optional(),\n        retry_interval_ms: z.number().int().positive().optional(),\n        maxRetries: z.number().int().nonnegative().optional(),\n        max_retries: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    server: z\n      .object({\n        autoStart: z.boolean().optional(),\n        auto_start: z.boolean().optional(),\n        autoStopMinutes: z.number().int().nonnegative().optional(),\n        auto_stop_minutes: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    citation: z\n      .object({\n        defaultStyle: z.string().optional(),\n        default_style: z.string().optional(),\n        cslDirectory: z.union([z.string(), z.array(z.string())]).optional(),\n        csl_directory: z.union([z.string(), z.array(z.string())]).optional(),\n        defaultLocale: z.string().optional(),\n        default_locale: z.string().optional(),\n        defaultFormat: citationFormatSchema.optional(),\n        default_format: citationFormatSchema.optional(),\n      })\n      .optional(),\n    pubmed: z\n      .object({\n        email: z.string().optional(),\n        apiKey: z.string().optional(),\n        api_key: z.string().optional(),\n      })\n      .optional(),\n    fulltext: z\n      .object({\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    cli: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n        defaultSort: sortFieldSchema.optional(),\n        default_sort: sortFieldSchema.optional(),\n        defaultOrder: sortOrderSchema.optional(),\n        default_order: sortOrderSchema.optional(),\n        interactive: z\n          .object({\n            limit: z.number().int().nonnegative().optional(),\n            debounceMs: z.number().int().nonnegative().optional(),\n            debounce_ms: z.number().int().nonnegative().optional(),\n          })\n          .optional(),\n        edit: z\n          .object({\n            defaultFormat: editFormatSchema.optional(),\n            default_format: editFormatSchema.optional(),\n          })\n          .optional(),\n      })\n      .optional(),\n    mcp: z\n      .object({\n        defaultLimit: z.number().int().nonnegative().optional(),\n        default_limit: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n  })\n  .passthrough(); // Allow unknown fields in TOML files\n\n/**\n * Inferred types from schemas\n */\nexport type LogLevel = z.infer<typeof logLevelSchema>;\nexport type BackupConfig = z.infer<typeof backupConfigSchema>;\nexport type WatchConfig = z.infer<typeof watchConfigSchema>;\nexport type ServerConfig = z.infer<typeof serverConfigSchema>;\nexport type CitationFormat = z.infer<typeof citationFormatSchema>;\nexport type CitationConfig = z.infer<typeof citationConfigSchema>;\nexport type PubmedConfig = z.infer<typeof pubmedConfigSchema>;\nexport type FulltextConfig = z.infer<typeof fulltextConfigSchema>;\nexport type InteractiveConfig = z.infer<typeof interactiveConfigSchema>;\nexport type EditConfigFormat = z.infer<typeof editFormatSchema>;\nexport type EditConfig = z.infer<typeof editConfigSchema>;\nexport type CliConfig = z.infer<typeof cliConfigSchema>;\nexport type McpConfig = z.infer<typeof mcpConfigSchema>;\nexport type Config = z.infer<typeof configSchema>;\nexport type PartialConfig = z.infer<typeof partialConfigSchema>;\n\n/**\n * Deep partial type for Config\n */\nexport type DeepPartialConfig = {\n  library?: string;\n  logLevel?: LogLevel;\n  backup?: Partial<BackupConfig>;\n  watch?: Partial<WatchConfig>;\n  server?: Partial<ServerConfig>;\n  citation?: Partial<CitationConfig>;\n  pubmed?: Partial<PubmedConfig>;\n  fulltext?: Partial<FulltextConfig>;\n  cli?: Partial<Omit<CliConfig, \"interactive\" | \"edit\">> & {\n    interactive?: Partial<InteractiveConfig>;\n    edit?: Partial<EditConfig>;\n  };\n  mcp?: Partial<McpConfig>;\n};\n\n/**\n * Normalize backup configuration from snake_case to camelCase\n */\nfunction normalizeBackupConfig(\n  backup: Partial<{\n    maxGenerations?: number;\n    max_generations?: number;\n    maxAgeDays?: number;\n    max_age_days?: number;\n    directory?: string;\n  }>\n): Partial<BackupConfig> | undefined {\n  const normalized: Partial<BackupConfig> = {};\n\n  const maxGenerations = backup.maxGenerations ?? backup.max_generations;\n  if (maxGenerations !== undefined) {\n    normalized.maxGenerations = maxGenerations;\n  }\n\n  const maxAgeDays = backup.maxAgeDays ?? backup.max_age_days;\n  if (maxAgeDays !== undefined) {\n    normalized.maxAgeDays = maxAgeDays;\n  }\n\n  if (backup.directory !== undefined) {\n    normalized.directory = backup.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize watch configuration from snake_case to camelCase\n */\nfunction normalizeWatchConfig(\n  watch: Partial<{\n    debounceMs?: number;\n    debounce_ms?: number;\n    pollIntervalMs?: number;\n    poll_interval_ms?: number;\n    retryIntervalMs?: number;\n    retry_interval_ms?: number;\n    maxRetries?: number;\n    max_retries?: number;\n  }>\n): Partial<WatchConfig> | undefined {\n  const normalized: Partial<WatchConfig> = {};\n\n  const debounceMs = watch.debounceMs ?? watch.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n\n  const pollIntervalMs = watch.pollIntervalMs ?? watch.poll_interval_ms;\n  if (pollIntervalMs !== undefined) {\n    normalized.pollIntervalMs = pollIntervalMs;\n  }\n\n  const retryIntervalMs = watch.retryIntervalMs ?? watch.retry_interval_ms;\n  if (retryIntervalMs !== undefined) {\n    normalized.retryIntervalMs = retryIntervalMs;\n  }\n\n  const maxRetries = watch.maxRetries ?? watch.max_retries;\n  if (maxRetries !== undefined) {\n    normalized.maxRetries = maxRetries;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize server configuration from snake_case to camelCase\n */\nfunction normalizeServerConfig(\n  server: Partial<{\n    autoStart?: boolean;\n    auto_start?: boolean;\n    autoStopMinutes?: number;\n    auto_stop_minutes?: number;\n  }>\n): Partial<ServerConfig> | undefined {\n  const normalized: Partial<ServerConfig> = {};\n\n  const autoStart = server.autoStart ?? server.auto_start;\n  if (autoStart !== undefined) {\n    normalized.autoStart = autoStart;\n  }\n\n  const autoStopMinutes = server.autoStopMinutes ?? server.auto_stop_minutes;\n  if (autoStopMinutes !== undefined) {\n    normalized.autoStopMinutes = autoStopMinutes;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize citation configuration from snake_case to camelCase\n */\nfunction normalizeCitationConfig(\n  citation: Partial<{\n    defaultStyle?: string;\n    default_style?: string;\n    cslDirectory?: string | string[];\n    csl_directory?: string | string[];\n    defaultLocale?: string;\n    default_locale?: string;\n    defaultFormat?: CitationFormat;\n    default_format?: CitationFormat;\n  }>\n): Partial<CitationConfig> | undefined {\n  const normalized: Partial<CitationConfig> = {};\n\n  const defaultStyle = citation.defaultStyle ?? citation.default_style;\n  if (defaultStyle !== undefined) {\n    normalized.defaultStyle = defaultStyle;\n  }\n\n  const cslDirectory = citation.cslDirectory ?? citation.csl_directory;\n  if (cslDirectory !== undefined) {\n    // Normalize to array: string -> [string]\n    normalized.cslDirectory = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];\n  }\n\n  const defaultLocale = citation.defaultLocale ?? citation.default_locale;\n  if (defaultLocale !== undefined) {\n    normalized.defaultLocale = defaultLocale;\n  }\n\n  const defaultFormat = citation.defaultFormat ?? citation.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize pubmed configuration from snake_case to camelCase\n */\nfunction normalizePubmedConfig(\n  pubmed: Partial<{\n    email?: string;\n    apiKey?: string;\n    api_key?: string;\n  }>\n): Partial<PubmedConfig> | undefined {\n  const normalized: Partial<PubmedConfig> = {};\n\n  if (pubmed.email !== undefined) {\n    normalized.email = pubmed.email;\n  }\n\n  const apiKey = pubmed.apiKey ?? pubmed.api_key;\n  if (apiKey !== undefined) {\n    normalized.apiKey = apiKey;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Section normalizers mapping\n */\nconst sectionNormalizers = {\n  backup: normalizeBackupConfig,\n  watch: normalizeWatchConfig,\n  server: normalizeServerConfig,\n  citation: normalizeCitationConfig,\n  pubmed: normalizePubmedConfig,\n  fulltext: normalizeFulltextConfig,\n  cli: normalizeCliConfig,\n  mcp: normalizeMcpConfig,\n} as const;\n\ntype SectionKey = keyof typeof sectionNormalizers;\n\n/**\n * Helper to apply a normalizer function to a config section\n */\nfunction applyNormalizer<K extends SectionKey>(\n  normalized: DeepPartialConfig,\n  partial: PartialConfig,\n  key: K,\n  normalizer: (typeof sectionNormalizers)[K]\n): void {\n  const value = partial[key];\n  if (value !== undefined) {\n    const result = (normalizer as (input: unknown) => DeepPartialConfig[K] | undefined)(value);\n    if (result) {\n      normalized[key] = result;\n    }\n  }\n}\n\n/**\n * Normalize snake_case fields to camelCase\n */\nexport function normalizePartialConfig(partial: PartialConfig): DeepPartialConfig {\n  const normalized: DeepPartialConfig = {};\n\n  // Simple fields\n  if (partial.library !== undefined) {\n    normalized.library = partial.library;\n  }\n  const logLevel = partial.logLevel ?? partial.log_level;\n  if (logLevel !== undefined) {\n    normalized.logLevel = logLevel;\n  }\n\n  // Section fields\n  for (const key of Object.keys(sectionNormalizers) as SectionKey[]) {\n    applyNormalizer(normalized, partial, key, sectionNormalizers[key]);\n  }\n\n  return normalized;\n}\n\n/**\n * Normalize fulltext configuration\n */\nfunction normalizeFulltextConfig(fulltext: {\n  directory?: string | undefined;\n}): Partial<FulltextConfig> | undefined {\n  const normalized: Partial<FulltextConfig> = {};\n\n  if (fulltext.directory !== undefined) {\n    normalized.directory = fulltext.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize interactive config subsection\n */\nfunction normalizeInteractiveSection(\n  interactive: Partial<{\n    limit?: number;\n    debounceMs?: number;\n    debounce_ms?: number;\n  }>\n): Partial<InteractiveConfig> | undefined {\n  const normalized: Partial<InteractiveConfig> = {};\n  if (interactive.limit !== undefined) {\n    normalized.limit = interactive.limit;\n  }\n  const debounceMs = interactive.debounceMs ?? interactive.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize edit config subsection\n */\nfunction normalizeEditSection(\n  edit: Partial<{\n    defaultFormat?: EditConfigFormat;\n    default_format?: EditConfigFormat;\n  }>\n): Partial<EditConfig> | undefined {\n  const normalized: Partial<EditConfig> = {};\n  const defaultFormat = edit.defaultFormat ?? edit.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize CLI configuration from snake_case to camelCase\n */\nfunction normalizeCliConfig(\n  cli: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n    defaultSort?: CliConfig[\"defaultSort\"];\n    default_sort?: CliConfig[\"defaultSort\"];\n    defaultOrder?: CliConfig[\"defaultOrder\"];\n    default_order?: CliConfig[\"defaultOrder\"];\n    interactive?: Partial<{\n      limit?: number;\n      debounceMs?: number;\n      debounce_ms?: number;\n    }>;\n    edit?: Partial<{\n      defaultFormat?: EditConfigFormat;\n      default_format?: EditConfigFormat;\n    }>;\n  }>\n): Partial<CliConfig> | undefined {\n  const normalized: Partial<CliConfig> = {};\n\n  const defaultLimit = cli.defaultLimit ?? cli.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  const defaultSort = cli.defaultSort ?? cli.default_sort;\n  if (defaultSort !== undefined) {\n    normalized.defaultSort = defaultSort;\n  }\n\n  const defaultOrder = cli.defaultOrder ?? cli.default_order;\n  if (defaultOrder !== undefined) {\n    normalized.defaultOrder = defaultOrder;\n  }\n\n  if (cli.interactive !== undefined) {\n    const interactive = normalizeInteractiveSection(cli.interactive);\n    if (interactive) {\n      normalized.interactive = interactive as InteractiveConfig;\n    }\n  }\n\n  if (cli.edit !== undefined) {\n    const edit = normalizeEditSection(cli.edit);\n    if (edit) {\n      normalized.edit = edit as EditConfig;\n    }\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize MCP configuration from snake_case to camelCase\n */\nfunction normalizeMcpConfig(\n  mcp: Partial<{\n    defaultLimit?: number;\n    default_limit?: number;\n  }>\n): Partial<McpConfig> | undefined {\n  const normalized: Partial<McpConfig> = {};\n\n  const defaultLimit = mcp.defaultLimit ?? mcp.default_limit;\n  if (defaultLimit !== undefined) {\n    normalized.defaultLimit = defaultLimit;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n","/**\n * Default configuration values\n */\n\nimport { tmpdir } from \"node:os\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport type { Config } from \"./schema.js\";\n\n/**\n * Get the default backup directory\n * Uses $TMPDIR/reference-manager/backups/\n */\nexport function getDefaultBackupDirectory(): string {\n  return join(tmpdir(), \"reference-manager\", \"backups\");\n}\n\n/**\n * Get the default library path\n * Uses ~/.reference-manager/csl.library.json\n */\nexport function getDefaultLibraryPath(): string {\n  return join(homedir(), \".reference-manager\", \"csl.library.json\");\n}\n\n/**\n * Get the default user config path\n * Uses ~/.reference-manager/config.toml\n */\nexport function getDefaultUserConfigPath(): string {\n  return join(homedir(), \".reference-manager\", \"config.toml\");\n}\n\n/**\n * Get the default current directory config filename\n * Uses .reference-manager.config.toml\n */\nexport function getDefaultCurrentDirConfigFilename(): string {\n  return \".reference-manager.config.toml\";\n}\n\n/**\n * Get the default CSL directory\n * Uses ~/.reference-manager/csl/\n */\nexport function getDefaultCslDirectory(): string {\n  return join(homedir(), \".reference-manager\", \"csl\");\n}\n\n/**\n * Get the default fulltext directory\n * Uses ~/.reference-manager/fulltext/\n */\nexport function getDefaultFulltextDirectory(): string {\n  return join(homedir(), \".reference-manager\", \"fulltext\");\n}\n\n/**\n * Default configuration\n */\nexport const defaultConfig: Config = {\n  library: getDefaultLibraryPath(),\n  logLevel: \"info\",\n  backup: {\n    maxGenerations: 50,\n    maxAgeDays: 365,\n    directory: getDefaultBackupDirectory(),\n  },\n  watch: {\n    debounceMs: 500,\n    pollIntervalMs: 5000,\n    retryIntervalMs: 200,\n    maxRetries: 10,\n  },\n  server: {\n    autoStart: false,\n    autoStopMinutes: 0,\n  },\n  citation: {\n    defaultStyle: \"apa\",\n    cslDirectory: [getDefaultCslDirectory()],\n    defaultLocale: \"en-US\",\n    defaultFormat: \"text\",\n  },\n  pubmed: {\n    email: undefined,\n    apiKey: undefined,\n  },\n  fulltext: {\n    directory: getDefaultFulltextDirectory(),\n  },\n  cli: {\n    defaultLimit: 0,\n    defaultSort: \"updated\",\n    defaultOrder: \"desc\",\n    interactive: {\n      limit: 20,\n      debounceMs: 200,\n    },\n    edit: {\n      defaultFormat: \"yaml\",\n    },\n  },\n  mcp: {\n    defaultLimit: 20,\n  },\n};\n","/**\n * Configuration loader\n */\n\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { parse as parseTOML } from \"@iarna/toml\";\nimport {\n  defaultConfig,\n  getDefaultCurrentDirConfigFilename,\n  getDefaultUserConfigPath,\n} from \"./defaults.js\";\nimport {\n  type Config,\n  type DeepPartialConfig,\n  type PartialConfig,\n  configSchema,\n  normalizePartialConfig,\n  partialConfigSchema,\n} from \"./schema.js\";\n\n/**\n * Options for loading configuration\n */\nexport interface LoadConfigOptions {\n  /** Current working directory (default: process.cwd()) */\n  cwd?: string;\n  /** User config path (default: ~/.reference-manager/config.toml) */\n  userConfigPath?: string;\n  /** CLI argument overrides */\n  overrides?: Partial<Config>;\n}\n\n/**\n * Load and parse a TOML config file\n 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package/dist/cli/commands/edit.d.ts

@@ -0,0 +1,46 @@
+/**
+ * Edit command implementation
+ *
+ * Opens references in external editor for interactive editing.
+ */
+import { type EditFormat } from "../../features/edit/index.js";
+import type { ExecutionContext } from "../execution-context.js";
+/**
+ * Options for the edit command.
+ */
+export interface EditCommandOptions {
+    /** One or more identifiers (citation keys or UUIDs) */
+    identifiers: string[];
+    /** Edit format: yaml (default) or json */
+    format: EditFormat;
+    /** Whether identifiers are UUIDs */
+    useUuid?: boolean;
+    /** Custom editor command (overrides $VISUAL/$EDITOR) */
+    editor?: string;
+}
+/**
+ * Result from edit command execution.
+ */
+export interface EditCommandResult {
+    success: boolean;
+    updatedCount: number;
+    updatedIds: string[];
+    error?: string;
+    aborted?: boolean;
+}
+/**
+ * Execute the edit command.
+ *
+ * @param options - Edit command options
+ * @param context - Execution context
+ * @returns Edit result
+ */
+export declare function executeEditCommand(options: EditCommandOptions, context: ExecutionContext): Promise<EditCommandResult>;
+/**
+ * Format edit result for CLI output.
+ *
+ * @param result - Edit result
+ * @returns Formatted output string
+ */
+export declare function formatEditOutput(result: EditCommandResult): string;
+//# sourceMappingURL=edit.d.ts.map

package/dist/cli/commands/edit.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"edit.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/edit.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAIH,OAAO,EAAE,KAAK,UAAU,EAA8B,MAAM,8BAA8B,CAAC;AAC3F,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAEhE;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,uDAAuD;IACvD,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,0CAA0C;IAC1C,MAAM,EAAE,UAAU,CAAC;IACnB,oCAAoC;IACpC,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,wDAAwD;IACxD,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAyGD;;;;;;GAMG;AACH,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,kBAAkB,EAC3B,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,iBAAiB,CAAC,CAmD5B;AAED;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,iBAAiB,GAAG,MAAM,CAsBlE"}

package/dist/cli/commands/index.d.ts

@@ -19,4 +19,6 @@ export { executeFulltextAttach, executeFulltextGet, executeFulltextDetach, forma
 export type { FulltextAttachOptions, FulltextAttachResult, FulltextGetOptions, FulltextGetResult, FulltextDetachOptions, FulltextDetachResult, } from "./fulltext.js";
 export { executeExport, formatExportOutput, getExportExitCode } from "./export.js";
 export type { ExportCommandOptions, ExportCommandResult } from "./export.js";
+export { executeEditCommand, formatEditOutput } from "./edit.js";
+export type { EditCommandOptions, EditCommandResult } from "./edit.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/cli/commands/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,WAAW,CAAC;AAC1D,YAAY,EAAE,kBAAkB,EAAE,iBAAiB,EAAE,MAAM,WAAW,CAAC;AAEvE,OAAO,EAAE,aAAa,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAC;AAE7E,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM,UAAU,CAAC;AACpE,YAAY,EACV,iBAAiB,EACjB,gBAAgB,EAChB,SAAS,EACT,UAAU,EACV,WAAW,GACZ,MAAM,UAAU,CAAC;AAElB,OAAO,EAAE,aAAa,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAC;AAE7E,OAAO,EAAE,aAAa,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAC;AAE7E,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AACpE,YAAY,EAAE,kBAAkB,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAElE,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAC7F,YAAY,EAAE,kBAAkB,EAAE,iBAAiB,EAAE,MAAM,WAAW,CAAC;AAEvE,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,qBAAqB,EACrB,0BAA0B,EAC1B,uBAAuB,EACvB,0BAA0B,EAC1B,mBAAmB,GACpB,MAAM,eAAe,CAAC;AACvB,YAAY,EACV,qBAAqB,EACrB,oBAAoB,EACpB,kBAAkB,EAClB,iBAAiB,EACjB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,eAAe,CAAC;AAEvB,OAAO,EAAE,aAAa,EAAE,kBAAkB,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACnF,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAC;AAE7E,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,WAAW,CAAC;AACjE,YAAY,EAAE,kBAAkB,EAAE,iBAAiB,EAAE,MAAM,WAAW,CAAC"}

package/dist/cli/helpers.d.ts

@@ -49,7 +49,10 @@ export declare function loadConfigWithOverrides(options: CliOptions): Promise<Co
 export declare function getOutputFormat(options: CliOptions): OutputFormat;
 /**
  * Check if running in TTY
- * @returns True if stdin and stdout are TTY
+ * @returns True if stdin and stdout are TTY, or if REF_SKIP_TTY_CHECK is set
+ *
+ * @remarks
+ * Set REF_SKIP_TTY_CHECK=1 environment variable to skip TTY check (for testing only)
  */
 export declare function isTTY(): boolean;
 /**

package/dist/cli/helpers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"helpers.d.ts","sourceRoot":"","sources":["../../src/cli/helpers.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAElD;;GAEG;AACH,MAAM,MAAM,YAAY,GAAG,QAAQ,GAAG,MAAM,GAAG,UAAU,GAAG,MAAM,GAAG,QAAQ,CAAC;AAE9E;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,QAAQ,GAAG,MAAM,GAAG,OAAO,CAAC;IACvC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;;;GAIG;AACH,wBAAsB,aAAa,CAAC,IAAI,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAkBlE;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAYrD;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAAC,OAAO,EAAE,UAAU,GAAG,OAAO,CAAC,MAAM,CAAC,CAgClF;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,UAAU,GAAG,YAAY,CAejE;AAED;;;GAGG;AACH,wBAAgB,KAAK,IAAI,OAAO,CAE/B;AAED;;;;GAIG;AACH,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAsBvE;AAED;;;;GAIG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC,CASzD;AAED;;;;GAIG;AACH,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,MAAM,CAAC,CAMxD;AAED;;;;GAIG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,MAAM,CAAC,CAMvD"}
+{"version":3,"file":"helpers.d.ts","sourceRoot":"","sources":["../../src/cli/helpers.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAElD;;GAEG;AACH,MAAM,MAAM,YAAY,GAAG,QAAQ,GAAG,MAAM,GAAG,UAAU,GAAG,MAAM,GAAG,QAAQ,CAAC;AAE9E;;GAEG;AACH,MAAM,WAAW,UAAU;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,QAAQ,GAAG,MAAM,GAAG,OAAO,CAAC;IACvC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;;;GAIG;AACH,wBAAsB,aAAa,CAAC,IAAI,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAkBlE;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAYrD;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAAC,OAAO,EAAE,UAAU,GAAG,OAAO,CAAC,MAAM,CAAC,CAgClF;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,UAAU,GAAG,YAAY,CAejE;AAED;;;;;;GAMG;AACH,wBAAgB,KAAK,IAAI,OAAO,CAK/B;AAED;;;;GAIG;AACH,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAsBvE;AAED;;;;GAIG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC,CASzD;AAED;;;;GAIG;AACH,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,MAAM,CAAC,CAMxD;AAED;;;;GAIG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,MAAM,CAAC,CAMvD"}

package/dist/cli/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cli/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA8EpC;;GAEG;AACH,wBAAgB,aAAa,IAAI,OAAO,CAgCvC;AA2/BD;;GAEG;AACH,wBAAsB,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBxD"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cli/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAgFpC;;GAEG;AACH,wBAAgB,aAAa,IAAI,OAAO,CAiCvC;AA2jCD;;GAEG;AACH,wBAAsB,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBxD"}

package/dist/cli.js

@@ -1,6 +1,6 @@
 import "commander";
 import "zod";
-import { c, m } from "./chunks/index-C8U-ofi3.js";
+import { c, m } from "./chunks/index-HNDp6ifk.js";
 import "./chunks/file-watcher-BhIAeC21.js";
 import "./chunks/index-Az8CHxm3.js";
 export {

package/dist/config/defaults.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE1C;;;GAGG;AACH,wBAAgB,yBAAyB,IAAI,MAAM,CAElD;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,IAAI,MAAM,CAE9C;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,MAAM,CAEjD;AAED;;;GAGG;AACH,wBAAgB,kCAAkC,IAAI,MAAM,CAE3D;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,IAAI,MAAM,CAE/C;AAED;;;GAGG;AACH,wBAAgB,2BAA2B,IAAI,MAAM,CAEpD;AAED;;GAEG;AACH,eAAO,MAAM,aAAa,EAAE,MA2C3B,CAAC"}
+{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAE1C;;;GAGG;AACH,wBAAgB,yBAAyB,IAAI,MAAM,CAElD;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,IAAI,MAAM,CAE9C;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,MAAM,CAEjD;AAED;;;GAGG;AACH,wBAAgB,kCAAkC,IAAI,MAAM,CAE3D;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,IAAI,MAAM,CAE/C;AAED;;;GAGG;AACH,wBAAgB,2BAA2B,IAAI,MAAM,CAEpD;AAED;;GAEG;AACH,eAAO,MAAM,aAAa,EAAE,MA8C3B,CAAC"}

package/dist/config/loader.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"loader.d.ts","sourceRoot":"","sources":["../../src/config/loader.ts"],"names":[],"mappings":"AAAA;;GAEG;AAWH,OAAO,EACL,KAAK,MAAM,EAMZ,MAAM,aAAa,CAAC;AAErB;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,yDAAyD;IACzD,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,mEAAmE;IACnE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,6BAA6B;IAC7B,SAAS,CAAC,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;CAC7B;AA6ND;;;;;;;;;GASG;AACH,wBAAgB,UAAU,CAAC,OAAO,GAAE,iBAAsB,GAAG,MAAM,CAwClE"}
+{"version":3,"file":"loader.d.ts","sourceRoot":"","sources":["../../src/config/loader.ts"],"names":[],"mappings":"AAAA;;GAEG;AAWH,OAAO,EACL,KAAK,MAAM,EAMZ,MAAM,aAAa,CAAC;AAErB;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,yDAAyD;IACzD,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,mEAAmE;IACnE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,6BAA6B;IAC7B,SAAS,CAAC,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC;CAC7B;AAgOD;;;;;;;;;GASG;AACH,wBAAgB,UAAU,CAAC,OAAO,GAAE,iBAAsB,GAAG,MAAM,CAwClE"}

package/dist/config/schema.d.ts

@@ -17,6 +17,22 @@ export declare const interactiveConfigSchema: z.ZodObject<{
     limit: z.ZodNumber;
     debounceMs: z.ZodNumber;
 }, z.core.$strip>;
+/**
+ * Edit format schema
+ */
+export declare const editFormatSchema: z.ZodEnum<{
+    yaml: "yaml";
+    json: "json";
+}>;
+/**
+ * Edit command configuration schema
+ */
+export declare const editConfigSchema: z.ZodObject<{
+    defaultFormat: z.ZodEnum<{
+        yaml: "yaml";
+        json: "json";
+    }>;
+}, z.core.$strip>;
 /**
  * CLI configuration schema
  */
@@ -37,6 +53,12 @@ export declare const cliConfigSchema: z.ZodObject<{
         limit: z.ZodNumber;
         debounceMs: z.ZodNumber;
     }, z.core.$strip>;
+    edit: z.ZodObject<{
+        defaultFormat: z.ZodEnum<{
+            yaml: "yaml";
+            json: "json";
+        }>;
+    }, z.core.$strip>;
 }, z.core.$strip>;
 /**
  * MCP configuration schema
@@ -163,6 +185,12 @@ export declare const configSchema: z.ZodObject<{
             limit: z.ZodNumber;
             debounceMs: z.ZodNumber;
         }, z.core.$strip>;
+        edit: z.ZodObject<{
+            defaultFormat: z.ZodEnum<{
+                yaml: "yaml";
+                json: "json";
+            }>;
+        }, z.core.$strip>;
     }, z.core.$strip>;
     mcp: z.ZodObject<{
         defaultLimit: z.ZodNumber;
@@ -263,6 +291,16 @@ export declare const partialConfigSchema: z.ZodObject<{
             debounceMs: z.ZodOptional<z.ZodNumber>;
             debounce_ms: z.ZodOptional<z.ZodNumber>;
         }, z.core.$strip>>;
+        edit: z.ZodOptional<z.ZodObject<{
+            defaultFormat: z.ZodOptional<z.ZodEnum<{
+                yaml: "yaml";
+                json: "json";
+            }>>;
+            default_format: z.ZodOptional<z.ZodEnum<{
+                yaml: "yaml";
+                json: "json";
+            }>>;
+        }, z.core.$strip>>;
     }, z.core.$strip>>;
     mcp: z.ZodOptional<z.ZodObject<{
         defaultLimit: z.ZodOptional<z.ZodNumber>;
@@ -281,6 +319,8 @@ export type CitationConfig = z.infer<typeof citationConfigSchema>;
 export type PubmedConfig = z.infer<typeof pubmedConfigSchema>;
 export type FulltextConfig = z.infer<typeof fulltextConfigSchema>;
 export type InteractiveConfig = z.infer<typeof interactiveConfigSchema>;
+export type EditConfigFormat = z.infer<typeof editFormatSchema>;
+export type EditConfig = z.infer<typeof editConfigSchema>;
 export type CliConfig = z.infer<typeof cliConfigSchema>;
 export type McpConfig = z.infer<typeof mcpConfigSchema>;
 export type Config = z.infer<typeof configSchema>;
@@ -297,8 +337,9 @@ export type DeepPartialConfig = {
     citation?: Partial<CitationConfig>;
     pubmed?: Partial<PubmedConfig>;
     fulltext?: Partial<FulltextConfig>;
-    cli?: Partial<Omit<CliConfig, "interactive">> & {
+    cli?: Partial<Omit<CliConfig, "interactive" | "edit">> & {
         interactive?: Partial<InteractiveConfig>;
+        edit?: Partial<EditConfig>;
     };
     mcp?: Partial<McpConfig>;
 };

package/dist/config/schema.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB;;GAEG;AACH,eAAO,MAAM,cAAc;;;;EAAsC,CAAC;AAElE;;GAEG;AACH,eAAO,MAAM,uBAAuB;;;iBAGlC,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,gBAAgB;;;EAA2B,CAAC;AAEzD;;GAEG;AACH,eAAO,MAAM,gBAAgB;;;;;iBAE3B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;iBAM1B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,eAAe;;iBAE1B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,kBAAkB;;;;iBAI7B,CAAC;AAEH;;;;GAIG;AACH,eAAO,MAAM,iBAAiB;;;;;iBAK5B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,kBAAkB;;;iBAG7B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,oBAAoB;;;;EAAkC,CAAC;AAEpE;;GAEG;AACH,eAAO,MAAM,oBAAoB;;;;;;;;;iBAK/B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,kBAAkB;;;iBAG7B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,oBAAoB;;iBAE/B,CAAC;AAEH;;GAEG;AACH,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAWvB,CAAC;AAEH;;;GAGG;AACH,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAwFhB,CAAC;AAEjB;;GAEG;AACH,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AACtD,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAC9D,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAC9D,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAC9D,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,iBAAiB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,uBAAuB,CAAC,CAAC;AACxE,MAAM,MAAM,gBAAgB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAChE,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAC1D,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,MAAM,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,YAAY,CAAC,CAAC;AAClD,MAAM,MAAM,aAAa,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AAEhE;;GAEG;AACH,MAAM,MAAM,iBAAiB,GAAG;IAC9B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,MAAM,CAAC,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC;IAC/B,KAAK,CAAC,EAAE,OAAO,CAAC,WAAW,CAAC,CAAC;IAC7B,MAAM,CAAC,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC;IAC/B,QAAQ,CAAC,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;IACnC,MAAM,CAAC,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC;IAC/B,QAAQ,CAAC,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;IACnC,GAAG,CAAC,EAAE,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE,aAAa,GAAG,MAAM,CAAC,CAAC,GAAG;QACvD,WAAW,CAAC,EAAE,OAAO,CAAC,iBAAiB,CAAC,CAAC;QACzC,IAAI,CAAC,EAAE,OAAO,CAAC,UAAU,CAAC,CAAC;KAC5B,CAAC;IACF,GAAG,CAAC,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;CAC1B,CAAC;AAsMF;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,aAAa,GAAG,iBAAiB,CAkBhF"}

package/dist/features/edit/edit-session.d.ts

@@ -0,0 +1,26 @@
+/**
+ * Edit session manager for handling temporary file creation,
+ * editor invocation, and cleanup.
+ */
+export type EditFormat = "yaml" | "json";
+export interface EditSessionOptions {
+    format: EditFormat;
+    editor: string;
+}
+/**
+ * Creates a temporary file for editing.
+ */
+export declare function createTempFile(content: string, format: EditFormat): string;
+/**
+ * Opens the editor and waits for it to exit.
+ */
+export declare function openEditor(editor: string, filePath: string): number;
+/**
+ * Reads content from the temporary file.
+ */
+export declare function readTempFile(filePath: string): string;
+/**
+ * Deletes the temporary file.
+ */
+export declare function deleteTempFile(filePath: string): void;
+//# sourceMappingURL=edit-session.d.ts.map

package/dist/features/edit/edit-session.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"edit-session.d.ts","sourceRoot":"","sources":["../../../src/features/edit/edit-session.ts"],"names":[],"mappings":"AAKA;;;GAGG;AACH,MAAM,MAAM,UAAU,GAAG,MAAM,GAAG,MAAM,CAAC;AAEzC,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,UAAU,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,GAAG,MAAM,CAQ1E;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAOnE;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAErD;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,CAMrD"}

package/dist/features/edit/editor-resolver.d.ts

@@ -0,0 +1,9 @@
+/**
+ * Resolves the editor to use for editing references.
+ * Resolution order (same as Git):
+ * 1. $VISUAL environment variable
+ * 2. $EDITOR environment variable
+ * 3. Platform-specific fallback (vi/notepad)
+ */
+export declare function resolveEditor(platform?: NodeJS.Platform): string;
+//# sourceMappingURL=editor-resolver.d.ts.map

package/dist/features/edit/editor-resolver.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"editor-resolver.d.ts","sourceRoot":"","sources":["../../../src/features/edit/editor-resolver.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC,QAAQ,GAAG,MAAM,CAchE"}

package/dist/features/edit/field-transformer.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Transforms CSL-JSON date fields between internal and edit formats.
+ * Internal: { "date-parts": [[2024, 3, 15]] }
+ * Edit: "2024-03-15"
+ */
+export declare function datePartsToIso(dateParts: number[][]): string;
+/**
+ * Transforms ISO date string to CSL-JSON date-parts format.
+ * Edit: "2024-03-15"
+ * Internal: { "date-parts": [[2024, 3, 15]] }
+ */
+export declare function isoToDateParts(isoDate: string): number[][];
+/**
+ * Transforms a CSL date object to ISO string for editing.
+ */
+export declare function transformDateToEdit(date: {
+    "date-parts"?: number[][];
+} | undefined): string | undefined;
+/**
+ * Transforms an ISO date string back to CSL date object.
+ */
+export declare function transformDateFromEdit(isoDate: string): {
+    "date-parts": number[][];
+};
+//# sourceMappingURL=field-transformer.d.ts.map

package/dist/features/edit/field-transformer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"field-transformer.d.ts","sourceRoot":"","sources":["../../../src/features/edit/field-transformer.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,GAAG,MAAM,CAmB5D;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,EAAE,CAG1D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,IAAI,EAAE;IAAE,YAAY,CAAC,EAAE,MAAM,EAAE,EAAE,CAAA;CAAE,GAAG,SAAS,GAC9C,MAAM,GAAG,SAAS,CAKpB;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,MAAM,GAAG;IAAE,YAAY,EAAE,MAAM,EAAE,EAAE,CAAA;CAAE,CAInF"}

package/dist/features/edit/index.d.ts

@@ -0,0 +1,35 @@
+/**
+ * Edit feature entry point
+ *
+ * Orchestrates the edit workflow:
+ * 1. Serialize items to YAML/JSON
+ * 2. Create temp file
+ * 3. Open editor
+ * 4. Parse edited content
+ * 5. Return edited items
+ */
+import type { CslItem } from "../../core/csl-json/types.js";
+import { type EditFormat } from "./edit-session.js";
+export type { EditFormat };
+export interface EditOptions {
+    format: EditFormat;
+    editor: string;
+}
+export interface EditResult {
+    success: boolean;
+    editedItems: Record<string, unknown>[];
+    error?: string;
+}
+/**
+ * Executes the edit workflow.
+ *
+ * @param items - The CSL items to edit
+ * @param options - Edit options (format, editor)
+ * @returns The edit result containing edited items or error
+ */
+export declare function executeEdit(items: CslItem[], options: EditOptions): Promise<EditResult>;
+export { resolveEditor } from "./editor-resolver.js";
+export { deserializeFromJson, serializeToJson } from "./json-serializer.js";
+export { deserializeFromYaml } from "./yaml-deserializer.js";
+export { serializeToYaml } from "./yaml-serializer.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/features/edit/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/features/edit/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAC5D,OAAO,EACL,KAAK,UAAU,EAKhB,MAAM,mBAAmB,CAAC;AAK3B,YAAY,EAAE,UAAU,EAAE,CAAC;AAE3B,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,UAAU,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,OAAO,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC;IACvC,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAgBD;;;;;;GAMG;AACH,wBAAsB,WAAW,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,CAAC,CA6C7F;AAGD,OAAO,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AACrD,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAC5E,OAAO,EAAE,mBAAmB,EAAE,MAAM,wBAAwB,CAAC;AAC7D,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC"}

package/dist/features/edit/json-serializer.d.ts

@@ -0,0 +1,12 @@
+import type { CslItem } from "../../core/csl-json/types.js";
+/**
+ * Serializes CSL items to JSON format for editing.
+ * Protected fields are nested under _protected key.
+ */
+export declare function serializeToJson(items: CslItem[]): string;
+/**
+ * Deserializes JSON content back to CSL items.
+ * Ignores _protected fields.
+ */
+export declare function deserializeFromJson(jsonContent: string): Record<string, unknown>[];
+//# sourceMappingURL=json-serializer.d.ts.map

package/dist/features/edit/json-serializer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"json-serializer.d.ts","sourceRoot":"","sources":["../../../src/features/edit/json-serializer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AA4E5D;;;GAGG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,OAAO,EAAE,GAAG,MAAM,CAGxD;AAkBD;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAwBlF"}

package/dist/features/edit/yaml-deserializer.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Extracts the UUID from a protected comment block.
+ */
+export declare function extractUuidFromComment(content: string): string | undefined;
+/**
+ * Deserializes YAML content back to CSL items.
+ * Extracts UUID from comment blocks to match original items.
+ */
+export declare function deserializeFromYaml(yamlContent: string): Record<string, unknown>[];
+//# sourceMappingURL=yaml-deserializer.d.ts.map

package/dist/features/edit/yaml-deserializer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"yaml-deserializer.d.ts","sourceRoot":"","sources":["../../../src/features/edit/yaml-deserializer.ts"],"names":[],"mappings":"AAMA;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAG1E;AAkDD;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAWlF"}

package/dist/features/edit/yaml-serializer.d.ts

@@ -0,0 +1,7 @@
+import type { CslItem } from "../../core/csl-json/types.js";
+/**
+ * Serializes CSL items to YAML format for editing.
+ * Protected fields are shown as comments.
+ */
+export declare function serializeToYaml(items: CslItem[]): string;
+//# sourceMappingURL=yaml-serializer.d.ts.map

package/dist/features/edit/yaml-serializer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"yaml-serializer.d.ts","sourceRoot":"","sources":["../../../src/features/edit/yaml-serializer.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAC;AAoF5D;;;GAGG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,OAAO,EAAE,GAAG,MAAM,CA0BxD"}

package/dist/index.js

@@ -6,7 +6,7 @@ import writeFileAtomicLib from "write-file-atomic";
 import { existsSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { fileURLToPath } from "node:url";
-import { g as getOpenerCommand, o as openWithSystemApp, b as backupConfigSchema, c as configSchema, d as defaultConfig, a as getDefaultBackupDirectory, e as getDefaultCurrentDirConfigFilename, f as getDefaultLibraryPath, h as getDefaultUserConfigPath, l as loadConfig, i as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-B-qMK5su.js";
+import { g as getOpenerCommand, o as openWithSystemApp, b as backupConfigSchema, c as configSchema, d as defaultConfig, a as getDefaultBackupDirectory, e as getDefaultCurrentDirConfigFilename, f as getDefaultLibraryPath, h as getDefaultUserConfigPath, l as loadConfig, i as logLevelSchema, n as normalizePartialConfig, p as partialConfigSchema, w as watchConfigSchema } from "./chunks/loader-COOFA-HF.js";
 function validateCslJson(data) {
   const parseResult = CslLibrarySchema.safeParse(data);
   if (!parseResult.success) {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ncukondo/reference-manager",
-  "version": "0.11.0",
+  "version": "0.12.0",
   "description": "A local reference management tool using CSL-JSON as the single source of truth",
   "publishConfig": {
     "access": "public"
@@ -55,6 +55,7 @@
     "commander": "^12.1.0",
     "enquirer": "^2.4.1",
     "hono": "^4.11.1",
+    "js-yaml": "^4.1.1",
     "tabtab": "^3.0.2",
     "write-file-atomic": "^7.0.0",
     "yaml": "^2.8.2",
@@ -64,6 +65,7 @@
     "@biomejs/biome": "^1.9.0",
     "@hono/node-server": "^1.19.7",
     "@types/chokidar": "^1.7.5",
+    "@types/js-yaml": "^4.0.9",
     "@types/node": "^22.19.2",
     "@types/tabtab": "^3.0.4",
     "@types/write-file-atomic": "^4.0.3",