@ncukondo/reference-manager 0.1.0 → 0.4.0

package/dist/chunks/loader-DuzyKV70.js

@@ -0,0 +1,394 @@
+import { existsSync, readFileSync } from "node:fs";
+import { homedir, tmpdir } from "node:os";
+import { join } from "node:path";
+import { parse } from "@iarna/toml";
+import { z } from "zod";
+const logLevelSchema = z.enum(["silent", "info", "debug"]);
+const backupConfigSchema = z.object({
+  maxGenerations: z.number().int().positive(),
+  maxAgeDays: z.number().int().positive(),
+  directory: z.string().min(1)
+});
+const watchConfigSchema = z.object({
+  debounceMs: z.number().int().nonnegative(),
+  pollIntervalMs: z.number().int().positive(),
+  retryIntervalMs: z.number().int().positive(),
+  maxRetries: z.number().int().nonnegative()
+});
+const serverConfigSchema = z.object({
+  autoStart: z.boolean(),
+  autoStopMinutes: z.number().int().nonnegative()
+});
+const citationFormatSchema = z.enum(["text", "html", "rtf"]);
+const citationConfigSchema = z.object({
+  defaultStyle: z.string(),
+  cslDirectory: z.array(z.string()),
+  defaultLocale: z.string(),
+  defaultFormat: citationFormatSchema
+});
+const pubmedConfigSchema = z.object({
+  email: z.string().optional(),
+  apiKey: z.string().optional()
+});
+const fulltextConfigSchema = z.object({
+  directory: z.string().min(1)
+});
+const configSchema = z.object({
+  library: z.string().min(1),
+  logLevel: logLevelSchema,
+  backup: backupConfigSchema,
+  watch: watchConfigSchema,
+  server: serverConfigSchema,
+  citation: citationConfigSchema,
+  pubmed: pubmedConfigSchema,
+  fulltext: fulltextConfigSchema
+});
+const partialConfigSchema = z.object({
+  library: z.string().min(1).optional(),
+  logLevel: logLevelSchema.optional(),
+  log_level: logLevelSchema.optional(),
+  // snake_case support
+  backup: z.object({
+    maxGenerations: z.number().int().positive().optional(),
+    max_generations: z.number().int().positive().optional(),
+    maxAgeDays: z.number().int().positive().optional(),
+    max_age_days: z.number().int().positive().optional(),
+    directory: z.string().min(1).optional()
+  }).optional(),
+  watch: z.object({
+    debounceMs: z.number().int().nonnegative().optional(),
+    debounce_ms: z.number().int().nonnegative().optional(),
+    pollIntervalMs: z.number().int().positive().optional(),
+    poll_interval_ms: z.number().int().positive().optional(),
+    retryIntervalMs: z.number().int().positive().optional(),
+    retry_interval_ms: z.number().int().positive().optional(),
+    maxRetries: z.number().int().nonnegative().optional(),
+    max_retries: z.number().int().nonnegative().optional()
+  }).optional(),
+  server: z.object({
+    autoStart: z.boolean().optional(),
+    auto_start: z.boolean().optional(),
+    autoStopMinutes: z.number().int().nonnegative().optional(),
+    auto_stop_minutes: z.number().int().nonnegative().optional()
+  }).optional(),
+  citation: z.object({
+    defaultStyle: z.string().optional(),
+    default_style: z.string().optional(),
+    cslDirectory: z.union([z.string(), z.array(z.string())]).optional(),
+    csl_directory: z.union([z.string(), z.array(z.string())]).optional(),
+    defaultLocale: z.string().optional(),
+    default_locale: z.string().optional(),
+    defaultFormat: citationFormatSchema.optional(),
+    default_format: citationFormatSchema.optional()
+  }).optional(),
+  pubmed: z.object({
+    email: z.string().optional(),
+    apiKey: z.string().optional(),
+    api_key: z.string().optional()
+  }).optional(),
+  fulltext: z.object({
+    directory: z.string().min(1).optional()
+  }).optional()
+}).passthrough();
+function normalizeBackupConfig(backup) {
+  const normalized = {};
+  const maxGenerations = backup.maxGenerations ?? backup.max_generations;
+  if (maxGenerations !== void 0) {
+    normalized.maxGenerations = maxGenerations;
+  }
+  const maxAgeDays = backup.maxAgeDays ?? backup.max_age_days;
+  if (maxAgeDays !== void 0) {
+    normalized.maxAgeDays = maxAgeDays;
+  }
+  if (backup.directory !== void 0) {
+    normalized.directory = backup.directory;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizeWatchConfig(watch) {
+  const normalized = {};
+  const debounceMs = watch.debounceMs ?? watch.debounce_ms;
+  if (debounceMs !== void 0) {
+    normalized.debounceMs = debounceMs;
+  }
+  const pollIntervalMs = watch.pollIntervalMs ?? watch.poll_interval_ms;
+  if (pollIntervalMs !== void 0) {
+    normalized.pollIntervalMs = pollIntervalMs;
+  }
+  const retryIntervalMs = watch.retryIntervalMs ?? watch.retry_interval_ms;
+  if (retryIntervalMs !== void 0) {
+    normalized.retryIntervalMs = retryIntervalMs;
+  }
+  const maxRetries = watch.maxRetries ?? watch.max_retries;
+  if (maxRetries !== void 0) {
+    normalized.maxRetries = maxRetries;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizeServerConfig(server) {
+  const normalized = {};
+  const autoStart = server.autoStart ?? server.auto_start;
+  if (autoStart !== void 0) {
+    normalized.autoStart = autoStart;
+  }
+  const autoStopMinutes = server.autoStopMinutes ?? server.auto_stop_minutes;
+  if (autoStopMinutes !== void 0) {
+    normalized.autoStopMinutes = autoStopMinutes;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizeCitationConfig(citation) {
+  const normalized = {};
+  const defaultStyle = citation.defaultStyle ?? citation.default_style;
+  if (defaultStyle !== void 0) {
+    normalized.defaultStyle = defaultStyle;
+  }
+  const cslDirectory = citation.cslDirectory ?? citation.csl_directory;
+  if (cslDirectory !== void 0) {
+    normalized.cslDirectory = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];
+  }
+  const defaultLocale = citation.defaultLocale ?? citation.default_locale;
+  if (defaultLocale !== void 0) {
+    normalized.defaultLocale = defaultLocale;
+  }
+  const defaultFormat = citation.defaultFormat ?? citation.default_format;
+  if (defaultFormat !== void 0) {
+    normalized.defaultFormat = defaultFormat;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizePubmedConfig(pubmed) {
+  const normalized = {};
+  if (pubmed.email !== void 0) {
+    normalized.email = pubmed.email;
+  }
+  const apiKey = pubmed.apiKey ?? pubmed.api_key;
+  if (apiKey !== void 0) {
+    normalized.apiKey = apiKey;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function normalizePartialConfig(partial) {
+  const normalized = {};
+  if (partial.library !== void 0) {
+    normalized.library = partial.library;
+  }
+  const logLevel = partial.logLevel ?? partial.log_level;
+  if (logLevel !== void 0) {
+    normalized.logLevel = logLevel;
+  }
+  const backup = partial.backup !== void 0 ? normalizeBackupConfig(partial.backup) : void 0;
+  if (backup) {
+    normalized.backup = backup;
+  }
+  const watch = partial.watch !== void 0 ? normalizeWatchConfig(partial.watch) : void 0;
+  if (watch) {
+    normalized.watch = watch;
+  }
+  const server = partial.server !== void 0 ? normalizeServerConfig(partial.server) : void 0;
+  if (server) {
+    normalized.server = server;
+  }
+  const citation = partial.citation !== void 0 ? normalizeCitationConfig(partial.citation) : void 0;
+  if (citation) {
+    normalized.citation = citation;
+  }
+  const pubmed = partial.pubmed !== void 0 ? normalizePubmedConfig(partial.pubmed) : void 0;
+  if (pubmed) {
+    normalized.pubmed = pubmed;
+  }
+  const fulltext = partial.fulltext !== void 0 ? normalizeFulltextConfig(partial.fulltext) : void 0;
+  if (fulltext) {
+    normalized.fulltext = fulltext;
+  }
+  return normalized;
+}
+function normalizeFulltextConfig(fulltext) {
+  const normalized = {};
+  if (fulltext.directory !== void 0) {
+    normalized.directory = fulltext.directory;
+  }
+  return Object.keys(normalized).length > 0 ? normalized : void 0;
+}
+function getDefaultBackupDirectory() {
+  return join(tmpdir(), "reference-manager", "backups");
+}
+function getDefaultLibraryPath() {
+  return join(homedir(), ".reference-manager", "csl.library.json");
+}
+function getDefaultUserConfigPath() {
+  return join(homedir(), ".reference-manager", "config.toml");
+}
+function getDefaultCurrentDirConfigFilename() {
+  return ".reference-manager.config.toml";
+}
+function getDefaultCslDirectory() {
+  return join(homedir(), ".reference-manager", "csl");
+}
+function getDefaultFulltextDirectory() {
+  return join(homedir(), ".reference-manager", "fulltext");
+}
+const defaultConfig = {
+  library: getDefaultLibraryPath(),
+  logLevel: "info",
+  backup: {
+    maxGenerations: 50,
+    maxAgeDays: 365,
+    directory: getDefaultBackupDirectory()
+  },
+  watch: {
+    debounceMs: 500,
+    pollIntervalMs: 5e3,
+    retryIntervalMs: 200,
+    maxRetries: 10
+  },
+  server: {
+    autoStart: false,
+    autoStopMinutes: 0
+  },
+  citation: {
+    defaultStyle: "apa",
+    cslDirectory: [getDefaultCslDirectory()],
+    defaultLocale: "en-US",
+    defaultFormat: "text"
+  },
+  pubmed: {
+    email: void 0,
+    apiKey: void 0
+  },
+  fulltext: {
+    directory: getDefaultFulltextDirectory()
+  }
+};
+function loadTOMLFile(path) {
+  if (!existsSync(path)) {
+    return null;
+  }
+  try {
+    const content = readFileSync(path, "utf-8");
+    const parsed = parse(content);
+    const validated = partialConfigSchema.parse(parsed);
+    return validated;
+  } catch (error) {
+    throw new Error(
+      `Failed to load config from ${path}: ${error instanceof Error ? error.message : String(error)}`
+    );
+  }
+}
+function mergeConfigs(base, ...overrides) {
+  const result = { ...base };
+  const sectionKeys = ["backup", "watch", "server", "citation", "pubmed", "fulltext"];
+  for (const override of overrides) {
+    if (!override) continue;
+    if (override.library !== void 0) {
+      result.library = override.library;
+    }
+    if (override.logLevel !== void 0) {
+      result.logLevel = override.logLevel;
+    }
+    for (const key of sectionKeys) {
+      if (override[key] !== void 0) {
+        result[key] = {
+          ...result[key],
+          ...override[key]
+        };
+      }
+    }
+  }
+  return result;
+}
+function fillDefaults(partial) {
+  return {
+    library: partial.library ?? defaultConfig.library,
+    logLevel: partial.logLevel ?? defaultConfig.logLevel,
+    backup: {
+      maxGenerations: partial.backup?.maxGenerations ?? defaultConfig.backup.maxGenerations,
+      maxAgeDays: partial.backup?.maxAgeDays ?? defaultConfig.backup.maxAgeDays,
+      directory: partial.backup?.directory ?? defaultConfig.backup.directory
+    },
+    watch: {
+      debounceMs: partial.watch?.debounceMs ?? defaultConfig.watch.debounceMs,
+      pollIntervalMs: partial.watch?.pollIntervalMs ?? defaultConfig.watch.pollIntervalMs,
+      retryIntervalMs: partial.watch?.retryIntervalMs ?? defaultConfig.watch.retryIntervalMs,
+      maxRetries: partial.watch?.maxRetries ?? defaultConfig.watch.maxRetries
+    },
+    server: {
+      autoStart: partial.server?.autoStart ?? defaultConfig.server.autoStart,
+      autoStopMinutes: partial.server?.autoStopMinutes ?? defaultConfig.server.autoStopMinutes
+    },
+    citation: fillCitationDefaults(partial.citation),
+    pubmed: fillPubmedDefaults(partial.pubmed),
+    fulltext: fillFulltextDefaults(partial.fulltext)
+  };
+}
+function fillCitationDefaults(partial) {
+  return {
+    defaultStyle: partial?.defaultStyle ?? defaultConfig.citation.defaultStyle,
+    cslDirectory: partial?.cslDirectory ?? defaultConfig.citation.cslDirectory,
+    defaultLocale: partial?.defaultLocale ?? defaultConfig.citation.defaultLocale,
+    defaultFormat: partial?.defaultFormat ?? defaultConfig.citation.defaultFormat
+  };
+}
+function fillPubmedDefaults(partial) {
+  const email = process.env.PUBMED_EMAIL ?? partial?.email ?? defaultConfig.pubmed.email;
+  const apiKey = process.env.PUBMED_API_KEY ?? partial?.apiKey ?? defaultConfig.pubmed.apiKey;
+  return {
+    email,
+    apiKey
+  };
+}
+function expandTilde(path) {
+  if (path.startsWith("~/")) {
+    return join(homedir(), path.slice(2));
+  }
+  return path;
+}
+function fillFulltextDefaults(partial) {
+  const envDir = process.env.REFERENCE_MANAGER_FULLTEXT_DIR;
+  const directory = envDir ?? partial?.directory ?? defaultConfig.fulltext.directory;
+  return {
+    directory: expandTilde(directory)
+  };
+}
+function loadConfig(options = {}) {
+  const cwd = options.cwd ?? process.cwd();
+  const userConfigPath = options.userConfigPath ?? getDefaultUserConfigPath();
+  const userConfig = loadTOMLFile(userConfigPath);
+  const envConfigPath = process.env.REFERENCE_MANAGER_CONFIG;
+  const envConfig = envConfigPath ? loadTOMLFile(envConfigPath) : null;
+  const currentConfigPath = join(cwd, getDefaultCurrentDirConfigFilename());
+  const currentConfig = loadTOMLFile(currentConfigPath);
+  const normalizedUser = userConfig ? normalizePartialConfig(userConfig) : null;
+  const normalizedEnv = envConfig ? normalizePartialConfig(envConfig) : null;
+  const normalizedCurrent = currentConfig ? normalizePartialConfig(currentConfig) : null;
+  const merged = mergeConfigs(
+    {},
+    normalizedUser,
+    normalizedEnv,
+    normalizedCurrent,
+    options.overrides
+  );
+  const config = fillDefaults(merged);
+  try {
+    return configSchema.parse(config);
+  } catch (error) {
+    throw new Error(
+      `Invalid configuration: ${error instanceof Error ? error.message : String(error)}`
+    );
+  }
+}
+export {
+  getDefaultCurrentDirConfigFilename as a,
+  backupConfigSchema as b,
+  configSchema as c,
+  defaultConfig as d,
+  getDefaultLibraryPath as e,
+  getDefaultUserConfigPath as f,
+  getDefaultBackupDirectory as g,
+  logLevelSchema as h,
+  loadConfig as l,
+  normalizePartialConfig as n,
+  partialConfigSchema as p,
+  watchConfigSchema as w
+};
+//# sourceMappingURL=loader-DuzyKV70.js.map

package/dist/chunks/loader-DuzyKV70.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"loader-DuzyKV70.js","sources":["../../src/config/schema.ts","../../src/config/defaults.ts","../../src/config/loader.ts"],"sourcesContent":["/**\n * Configuration schema using Zod\n */\n\nimport { z } from \"zod\";\n\n/**\n * Log level schema\n */\nexport const logLevelSchema = z.enum([\"silent\", \"info\", \"debug\"]);\n\n/**\n * Backup configuration schema\n */\nexport const backupConfigSchema = z.object({\n  maxGenerations: z.number().int().positive(),\n  maxAgeDays: z.number().int().positive(),\n  directory: z.string().min(1),\n});\n\n/**\n * File watching configuration schema\n * Note: File watching is always enabled in server mode (HTTP/MCP).\n * CLI mode does not use file watching.\n */\nexport const watchConfigSchema = z.object({\n  debounceMs: z.number().int().nonnegative(),\n  pollIntervalMs: z.number().int().positive(),\n  retryIntervalMs: z.number().int().positive(),\n  maxRetries: z.number().int().nonnegative(),\n});\n\n/**\n * Server configuration schema\n */\nexport const serverConfigSchema = z.object({\n  autoStart: z.boolean(),\n  autoStopMinutes: z.number().int().nonnegative(),\n});\n\n/**\n * Citation format schema\n */\nexport const citationFormatSchema = z.enum([\"text\", \"html\", \"rtf\"]);\n\n/**\n * Citation configuration schema\n */\nexport const citationConfigSchema = z.object({\n  defaultStyle: z.string(),\n  cslDirectory: z.array(z.string()),\n  defaultLocale: z.string(),\n  defaultFormat: citationFormatSchema,\n});\n\n/**\n * PubMed API configuration schema\n */\nexport const pubmedConfigSchema = z.object({\n  email: z.string().optional(),\n  apiKey: z.string().optional(),\n});\n\n/**\n * Fulltext storage configuration schema\n */\nexport const fulltextConfigSchema = z.object({\n  directory: z.string().min(1),\n});\n\n/**\n * Complete configuration schema\n */\nexport const configSchema = z.object({\n  library: z.string().min(1),\n  logLevel: logLevelSchema,\n  backup: backupConfigSchema,\n  watch: watchConfigSchema,\n  server: serverConfigSchema,\n  citation: citationConfigSchema,\n  pubmed: pubmedConfigSchema,\n  fulltext: fulltextConfigSchema,\n});\n\n/**\n * Partial configuration schema (for TOML files)\n * Supports both camelCase and snake_case field names\n */\nexport const partialConfigSchema = z\n  .object({\n    library: z.string().min(1).optional(),\n    logLevel: logLevelSchema.optional(),\n    log_level: logLevelSchema.optional(), // snake_case support\n    backup: z\n      .object({\n        maxGenerations: z.number().int().positive().optional(),\n        max_generations: z.number().int().positive().optional(),\n        maxAgeDays: z.number().int().positive().optional(),\n        max_age_days: z.number().int().positive().optional(),\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n    watch: z\n      .object({\n        debounceMs: z.number().int().nonnegative().optional(),\n        debounce_ms: z.number().int().nonnegative().optional(),\n        pollIntervalMs: z.number().int().positive().optional(),\n        poll_interval_ms: z.number().int().positive().optional(),\n        retryIntervalMs: z.number().int().positive().optional(),\n        retry_interval_ms: z.number().int().positive().optional(),\n        maxRetries: z.number().int().nonnegative().optional(),\n        max_retries: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    server: z\n      .object({\n        autoStart: z.boolean().optional(),\n        auto_start: z.boolean().optional(),\n        autoStopMinutes: z.number().int().nonnegative().optional(),\n        auto_stop_minutes: z.number().int().nonnegative().optional(),\n      })\n      .optional(),\n    citation: z\n      .object({\n        defaultStyle: z.string().optional(),\n        default_style: z.string().optional(),\n        cslDirectory: z.union([z.string(), z.array(z.string())]).optional(),\n        csl_directory: z.union([z.string(), z.array(z.string())]).optional(),\n        defaultLocale: z.string().optional(),\n        default_locale: z.string().optional(),\n        defaultFormat: citationFormatSchema.optional(),\n        default_format: citationFormatSchema.optional(),\n      })\n      .optional(),\n    pubmed: z\n      .object({\n        email: z.string().optional(),\n        apiKey: z.string().optional(),\n        api_key: z.string().optional(),\n      })\n      .optional(),\n    fulltext: z\n      .object({\n        directory: z.string().min(1).optional(),\n      })\n      .optional(),\n  })\n  .passthrough(); // Allow unknown fields in TOML files\n\n/**\n * Inferred types from schemas\n */\nexport type LogLevel = z.infer<typeof logLevelSchema>;\nexport type BackupConfig = z.infer<typeof backupConfigSchema>;\nexport type WatchConfig = z.infer<typeof watchConfigSchema>;\nexport type ServerConfig = z.infer<typeof serverConfigSchema>;\nexport type CitationFormat = z.infer<typeof citationFormatSchema>;\nexport type CitationConfig = z.infer<typeof citationConfigSchema>;\nexport type PubmedConfig = z.infer<typeof pubmedConfigSchema>;\nexport type FulltextConfig = z.infer<typeof fulltextConfigSchema>;\nexport type Config = z.infer<typeof configSchema>;\nexport type PartialConfig = z.infer<typeof partialConfigSchema>;\n\n/**\n * Deep partial type for Config\n */\nexport type DeepPartialConfig = {\n  library?: string;\n  logLevel?: LogLevel;\n  backup?: Partial<BackupConfig>;\n  watch?: Partial<WatchConfig>;\n  server?: Partial<ServerConfig>;\n  citation?: Partial<CitationConfig>;\n  pubmed?: Partial<PubmedConfig>;\n  fulltext?: Partial<FulltextConfig>;\n};\n\n/**\n * Normalize backup configuration from snake_case to camelCase\n */\nfunction normalizeBackupConfig(\n  backup: Partial<{\n    maxGenerations?: number;\n    max_generations?: number;\n    maxAgeDays?: number;\n    max_age_days?: number;\n    directory?: string;\n  }>\n): Partial<BackupConfig> | undefined {\n  const normalized: Partial<BackupConfig> = {};\n\n  const maxGenerations = backup.maxGenerations ?? backup.max_generations;\n  if (maxGenerations !== undefined) {\n    normalized.maxGenerations = maxGenerations;\n  }\n\n  const maxAgeDays = backup.maxAgeDays ?? backup.max_age_days;\n  if (maxAgeDays !== undefined) {\n    normalized.maxAgeDays = maxAgeDays;\n  }\n\n  if (backup.directory !== undefined) {\n    normalized.directory = backup.directory;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize watch configuration from snake_case to camelCase\n */\nfunction normalizeWatchConfig(\n  watch: Partial<{\n    debounceMs?: number;\n    debounce_ms?: number;\n    pollIntervalMs?: number;\n    poll_interval_ms?: number;\n    retryIntervalMs?: number;\n    retry_interval_ms?: number;\n    maxRetries?: number;\n    max_retries?: number;\n  }>\n): Partial<WatchConfig> | undefined {\n  const normalized: Partial<WatchConfig> = {};\n\n  const debounceMs = watch.debounceMs ?? watch.debounce_ms;\n  if (debounceMs !== undefined) {\n    normalized.debounceMs = debounceMs;\n  }\n\n  const pollIntervalMs = watch.pollIntervalMs ?? watch.poll_interval_ms;\n  if (pollIntervalMs !== undefined) {\n    normalized.pollIntervalMs = pollIntervalMs;\n  }\n\n  const retryIntervalMs = watch.retryIntervalMs ?? watch.retry_interval_ms;\n  if (retryIntervalMs !== undefined) {\n    normalized.retryIntervalMs = retryIntervalMs;\n  }\n\n  const maxRetries = watch.maxRetries ?? watch.max_retries;\n  if (maxRetries !== undefined) {\n    normalized.maxRetries = maxRetries;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize server configuration from snake_case to camelCase\n */\nfunction normalizeServerConfig(\n  server: Partial<{\n    autoStart?: boolean;\n    auto_start?: boolean;\n    autoStopMinutes?: number;\n    auto_stop_minutes?: number;\n  }>\n): Partial<ServerConfig> | undefined {\n  const normalized: Partial<ServerConfig> = {};\n\n  const autoStart = server.autoStart ?? server.auto_start;\n  if (autoStart !== undefined) {\n    normalized.autoStart = autoStart;\n  }\n\n  const autoStopMinutes = server.autoStopMinutes ?? server.auto_stop_minutes;\n  if (autoStopMinutes !== undefined) {\n    normalized.autoStopMinutes = autoStopMinutes;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize citation configuration from snake_case to camelCase\n */\nfunction normalizeCitationConfig(\n  citation: Partial<{\n    defaultStyle?: string;\n    default_style?: string;\n    cslDirectory?: string | string[];\n    csl_directory?: string | string[];\n    defaultLocale?: string;\n    default_locale?: string;\n    defaultFormat?: CitationFormat;\n    default_format?: CitationFormat;\n  }>\n): Partial<CitationConfig> | undefined {\n  const normalized: Partial<CitationConfig> = {};\n\n  const defaultStyle = citation.defaultStyle ?? citation.default_style;\n  if (defaultStyle !== undefined) {\n    normalized.defaultStyle = defaultStyle;\n  }\n\n  const cslDirectory = citation.cslDirectory ?? citation.csl_directory;\n  if (cslDirectory !== undefined) {\n    // Normalize to array: string -> [string]\n    normalized.cslDirectory = Array.isArray(cslDirectory) ? cslDirectory : [cslDirectory];\n  }\n\n  const defaultLocale = citation.defaultLocale ?? citation.default_locale;\n  if (defaultLocale !== undefined) {\n    normalized.defaultLocale = defaultLocale;\n  }\n\n  const defaultFormat = citation.defaultFormat ?? citation.default_format;\n  if (defaultFormat !== undefined) {\n    normalized.defaultFormat = defaultFormat;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize pubmed configuration from snake_case to camelCase\n */\nfunction normalizePubmedConfig(\n  pubmed: Partial<{\n    email?: string;\n    apiKey?: string;\n    api_key?: string;\n  }>\n): Partial<PubmedConfig> | undefined {\n  const normalized: Partial<PubmedConfig> = {};\n\n  if (pubmed.email !== undefined) {\n    normalized.email = pubmed.email;\n  }\n\n  const apiKey = pubmed.apiKey ?? pubmed.api_key;\n  if (apiKey !== undefined) {\n    normalized.apiKey = apiKey;\n  }\n\n  return Object.keys(normalized).length > 0 ? normalized : undefined;\n}\n\n/**\n * Normalize snake_case fields to camelCase\n */\nexport function normalizePartialConfig(partial: PartialConfig): DeepPartialConfig {\n  const normalized: DeepPartialConfig = {};\n\n  // Library\n  if (partial.library !== undefined) {\n    normalized.library = partial.library;\n  }\n\n  // Log level (prefer camelCase, fallback to snake_case)\n  const logLevel = partial.logLevel ?? partial.log_level;\n  if (logLevel !== undefined) {\n    normalized.logLevel = logLevel;\n  }\n\n  // Backup\n  const backup =\n    partial.backup !== undefined\n      ? normalizeBackupConfig(partial.backup as Parameters<typeof 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package/dist/cli/commands/add.d.ts

@@ -1,22 +1,50 @@
-import type { CslItem } from "../../core/csl-json/types.js";
-import type { DuplicateMatch } from "../../features/duplicate/types.js";
-export interface AddOptions {
+import type { PubmedConfig } from "../../features/import/fetcher.js";
+import type { AddReferencesResult, AddedItem, FailedItem, SkippedItem } from "../../features/operations/add.js";
+import type { ExecutionContext } from "../execution-context.js";
+/**
+ * Options for the add command.
+ */
+export interface AddCommandOptions {
+    /** Input strings (file paths, PMIDs, DOIs) */
+    inputs: string[];
+    /** Skip duplicate detection */
     force: boolean;
+    /** Explicit input format */
+    format?: string;
+    /** PubMed API configuration */
+    pubmedConfig?: PubmedConfig;
+    /** Show verbose error output */
+    verbose?: boolean;
+    /** Content from stdin */
+    stdinContent?: string;
 }
-export interface AddResult {
-    added: boolean;
-    item: CslItem;
-    idChanged: boolean;
-    originalId?: string | undefined;
-    duplicate?: DuplicateMatch | undefined;
-}
 /**
- * Add a new reference to the library.
+ * Result from add command execution.
+ */
+export type AddCommandResult = AddReferencesResult;
+export type { AddedItem, FailedItem, SkippedItem };
+/**
+ * Execute add command.
+ * Uses context.library.import() which works for both local and server modes.
+ *
+ * @param options - Add command options
+ * @param context - Execution context
+ * @returns Add result containing added, failed, and skipped items
+ */
+export declare function executeAdd(options: AddCommandOptions, context: ExecutionContext): Promise<AddCommandResult>;
+/**
+ * Format add result for CLI output.
+ *
+ * @param result - Add result
+ * @param verbose - Show verbose error output
+ * @returns Formatted output string
+ */
+export declare function formatAddOutput(result: AddCommandResult, verbose: boolean): string;
+/**
+ * Determine exit code based on result.
  *
- * @param existing - Existing library items
- * @param newItem - New item to add
- * @param options - Add options
- * @returns Add result
+ * @param result - Add result
+ * @returns Exit code (0 for success/partial success, 1 for complete failure)
  */
-export declare function add(existing: CslItem[], newItem: CslItem, options: AddOptions): Promise<AddResult>;
+export declare function getExitCode(result: AddCommandResult): number;
 //# sourceMappingURL=add.d.ts.map

package/dist/cli/commands/add.d.ts.map

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package/dist/cli/commands/cite.d.ts

@@ -0,0 +1,49 @@
+import type { CiteResult } from "../../features/operations/cite.js";
+import type { ExecutionContext } from "../execution-context.js";
+/**
+ * Options for the cite command.
+ */
+export interface CiteCommandOptions {
+    identifiers: string[];
+    uuid?: boolean;
+    style?: string;
+    cslFile?: string;
+    locale?: string;
+    format?: "text" | "html" | "rtf";
+    inText?: boolean;
+}
+/**
+ * Result from cite command execution.
+ */
+export type CiteCommandResult = CiteResult;
+/**
+ * Execute cite command.
+ * Uses context.library.cite() which works for both local and server modes.
+ *
+ * @param options - Cite command options
+ * @param context - Execution context
+ * @returns Cite result containing per-identifier results
+ */
+export declare function executeCite(options: CiteCommandOptions, context: ExecutionContext): Promise<CiteCommandResult>;
+/**
+ * Format cite result for CLI output.
+ *
+ * @param result - Cite result
+ * @returns Formatted output string (for stdout)
+ */
+export declare function formatCiteOutput(result: CiteCommandResult): string;
+/**
+ * Format cite errors for stderr.
+ *
+ * @param result - Cite result
+ * @returns Error messages to write to stderr
+ */
+export declare function formatCiteErrors(result: CiteCommandResult): string;
+/**
+ * Determine exit code based on result.
+ *
+ * @param result - Cite result
+ * @returns Exit code (0 for success/partial success, 1 for complete failure)
+ */
+export declare function getCiteExitCode(result: CiteCommandResult): number;
+//# sourceMappingURL=cite.d.ts.map

package/dist/cli/commands/cite.d.ts.map

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package/dist/cli/commands/fulltext.d.ts

@@ -0,0 +1,72 @@
+/**
+ * Fulltext CLI commands: attach, get, detach
+ *
+ * Uses ILibrary interface for unified operations across local and server modes.
+ */
+import type { FulltextType } from "../../features/fulltext/index.js";
+import { type FulltextAttachResult, type FulltextDetachResult, type FulltextGetResult } from "../../features/operations/fulltext/index.js";
+import type { ExecutionContext } from "../execution-context.js";
+/**
+ * Options for fulltext attach command
+ */
+export interface FulltextAttachOptions {
+    identifier: string;
+    filePath?: string;
+    type?: FulltextType;
+    move?: boolean;
+    force?: boolean;
+    byUuid?: boolean;
+    fulltextDirectory: string;
+    stdinContent?: Buffer;
+}
+/**
+ * Options for fulltext get command
+ */
+export interface FulltextGetOptions {
+    identifier: string;
+    type?: FulltextType;
+    stdout?: boolean;
+    byUuid?: boolean;
+    fulltextDirectory: string;
+}
+/**
+ * Options for fulltext detach command
+ */
+export interface FulltextDetachOptions {
+    identifier: string;
+    type?: FulltextType;
+    delete?: boolean;
+    force?: boolean;
+    byUuid?: boolean;
+    fulltextDirectory: string;
+}
+export type { FulltextAttachResult, FulltextGetResult, FulltextDetachResult };
+/**
+ * Execute fulltext attach command
+ */
+export declare function executeFulltextAttach(options: FulltextAttachOptions, context: ExecutionContext): Promise<FulltextAttachResult>;
+/**
+ * Execute fulltext get command
+ */
+export declare function executeFulltextGet(options: FulltextGetOptions, context: ExecutionContext): Promise<FulltextGetResult>;
+/**
+ * Execute fulltext detach command
+ */
+export declare function executeFulltextDetach(options: FulltextDetachOptions, context: ExecutionContext): Promise<FulltextDetachResult>;
+/**
+ * Format fulltext attach output
+ */
+export declare function formatFulltextAttachOutput(result: FulltextAttachResult): string;
+/**
+ * Format fulltext get output
+ */
+export declare function formatFulltextGetOutput(result: FulltextGetResult): string;
+/**
+ * Format fulltext detach output
+ */
+export declare function formatFulltextDetachOutput(result: FulltextDetachResult): string;
+/**
+ * Get exit code for fulltext command result
+ */
+export declare function getFulltextExitCode(result: FulltextAttachResult | FulltextGetResult | FulltextDetachResult): number;
+//# sourceMappingURL=fulltext.d.ts.map

package/dist/cli/commands/fulltext.d.ts.map

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