@ncoderz/awa 1.8.2 → 1.8.4

package/dist/{chunk-FGJMXOYA.js → chunk-2VUVSW6T.js}

@@ -224,11 +224,38 @@ function buildPropertyEntries(code, designFiles, entries) {
 
 // src/core/renumber/propagator.ts
 import { readFile, writeFile as writeFile2 } from "fs/promises";
-async function propagate(map, specs, markers, dryRun) {
+
+// src/core/check/glob.ts
+import { glob } from "fs/promises";
+function matchSimpleGlob(path, pattern) {
+  const regex = pattern.replace(/[.+^${}()|[\]\\]/g, "\\$&").replace(/\*\*/g, "<<GLOBSTAR>>").replace(/\*/g, "[^/]*").replace(/<<GLOBSTAR>>/g, ".*");
+  return new RegExp(`(^|/)${regex}($|/)`).test(path);
+}
+async function collectFiles(globs, ignore) {
+  const files = [];
+  const dirPrefixes = ignore.filter((ig) => ig.endsWith("/**")).map((ig) => ig.slice(0, -3));
+  const compiledIgnore = ignore.map((ig) => {
+    const regex = ig.replace(/[.+^${}()|[\]\\]/g, "\\$&").replace(/\*\*/g, "<<GLOBSTAR>>").replace(/\*/g, "[^/]*").replace(/<<GLOBSTAR>>/g, ".*");
+    return new RegExp(`(^|/)${regex}($|/)`);
+  });
+  for (const pattern of globs) {
+    for await (const filePath of glob(pattern, {
+      exclude: (p) => dirPrefixes.includes(p) || compiledIgnore.some((re) => re.test(p))
+    })) {
+      if (!compiledIgnore.some((re) => re.test(filePath))) {
+        files.push(filePath);
+      }
+    }
+  }
+  return [...new Set(files)];
+}
+
+// src/core/renumber/propagator.ts
+async function propagate(map, specs, markers, config, dryRun) {
   if (map.entries.size === 0) {
     return { affectedFiles: [], totalReplacements: 0 };
   }
-  const filePaths = collectFilePaths(map, specs, markers);
+  const filePaths = await collectFilePaths(map, specs, markers, config);
   const affectedFiles = [];
   let totalReplacements = 0;
   for (const filePath of filePaths) {
@@ -253,12 +280,17 @@ async function propagate(map, specs, markers, dryRun) {
   }
   return { affectedFiles, totalReplacements };
 }
-function collectFilePaths(map, specs, markers) {
+async function collectFilePaths(map, specs, markers, config) {
   const paths = /* @__PURE__ */ new Set();
   const code = map.code;
   for (const specFile of specs.specFiles) {
     paths.add(specFile.filePath);
   }
+  const combinedIgnore = [...config.specIgnore, ...config.extraSpecIgnore];
+  const extraFiles = await collectFiles(config.extraSpecGlobs, combinedIgnore);
+  for (const filePath of extraFiles) {
+    paths.add(filePath);
+  }
   const affectedIds = new Set(map.entries.keys());
   for (const marker of markers.markers) {
     if (affectedIds.has(marker.id) || hasCodePrefix(marker.id, code)) {
@@ -388,33 +420,6 @@ function formatJson(result) {
 
 // src/core/check/marker-scanner.ts
 import { readFile as readFile2 } from "fs/promises";
-
-// src/core/check/glob.ts
-import { glob } from "fs/promises";
-function matchSimpleGlob(path, pattern) {
-  const regex = pattern.replace(/[.+^${}()|[\]\\]/g, "\\$&").replace(/\*\*/g, "<<GLOBSTAR>>").replace(/\*/g, "[^/]*").replace(/<<GLOBSTAR>>/g, ".*");
-  return new RegExp(`(^|/)${regex}($|/)`).test(path);
-}
-async function collectFiles(globs, ignore) {
-  const files = [];
-  const dirPrefixes = ignore.filter((ig) => ig.endsWith("/**")).map((ig) => ig.slice(0, -3));
-  const compiledIgnore = ignore.map((ig) => {
-    const regex = ig.replace(/[.+^${}()|[\]\\]/g, "\\$&").replace(/\*\*/g, "<<GLOBSTAR>>").replace(/\*/g, "[^/]*").replace(/<<GLOBSTAR>>/g, ".*");
-    return new RegExp(`(^|/)${regex}($|/)`);
-  });
-  for (const pattern of globs) {
-    for await (const filePath of glob(pattern, {
-      exclude: (p) => dirPrefixes.includes(p) || compiledIgnore.some((re) => re.test(p))
-    })) {
-      if (!compiledIgnore.some((re) => re.test(filePath))) {
-        files.push(filePath);
-      }
-    }
-  }
-  return [...new Set(files)];
-}
-
-// src/core/check/marker-scanner.ts
 var MARKER_TYPE_MAP = {
   "@awa-impl": "impl",
   "@awa-test": "test",
@@ -677,6 +682,8 @@ var DEFAULT_CHECK_CONFIG = {
     "out/**",
     ".awa/**"
   ],
+  extraSpecGlobs: [".awa/**/*"],
+  extraSpecIgnore: [".awa/.agent/**"],
   ignoreMarkers: [],
   markers: ["@awa-impl", "@awa-test", "@awa-component"],
   idPattern: "([A-Z][A-Z0-9]*-\\d+(?:\\.\\d+)?(?:_AC-\\d+)?|[A-Z][A-Z0-9]*_P-\\d+)",
@@ -697,6 +704,12 @@ function buildScanConfig(fileConfig, overrides) {
     codeGlobs: toStringArray(section?.["code-globs"]) ?? [...DEFAULT_CHECK_CONFIG.codeGlobs],
     specIgnore: toStringArray(section?.["spec-ignore"]) ?? [...DEFAULT_CHECK_CONFIG.specIgnore],
     codeIgnore: toStringArray(section?.["code-ignore"]) ?? [...DEFAULT_CHECK_CONFIG.codeIgnore],
+    extraSpecGlobs: toStringArray(section?.["extra-spec-globs"]) ?? [
+      ...DEFAULT_CHECK_CONFIG.extraSpecGlobs
+    ],
+    extraSpecIgnore: toStringArray(section?.["extra-spec-ignore"]) ?? [
+      ...DEFAULT_CHECK_CONFIG.extraSpecIgnore
+    ],
     ignoreMarkers: toStringArray(section?.["ignore-markers"]) ?? [
       ...DEFAULT_CHECK_CONFIG.ignoreMarkers
     ],
@@ -734,7 +747,7 @@ async function renumberCommand(options) {
       logger.error("No feature code or --all specified");
       return 2;
     }
-    const { markers, specs } = await scan(options.config);
+    const { markers, specs, config } = await scan(options.config);
     let codes;
     if (options.all) {
       codes = discoverFeatureCodes(specs.specFiles);
@@ -751,7 +764,14 @@ async function renumberCommand(options) {
     let hasChanges = false;
     for (const code of codes) {
       try {
-        const result = await runRenumberPipeline(code, specs, markers, dryRun, fixMalformed);
+        const result = await runRenumberPipeline(
+          code,
+          specs,
+          markers,
+          config,
+          dryRun,
+          fixMalformed
+        );
         results.push(result);
         if (!result.noChange) {
           hasChanges = true;
@@ -794,7 +814,7 @@ async function renumberCommand(options) {
     return 2;
   }
 }
-async function runRenumberPipeline(code, specs, markers, dryRun, fixMalformed) {
+async function runRenumberPipeline(code, specs, markers, config, dryRun, fixMalformed) {
   const { map, noChange } = buildRenumberMap(code, specs);
   if (noChange) {
     return {
@@ -819,7 +839,7 @@ async function runRenumberPipeline(code, specs, markers, dryRun, fixMalformed) {
     malformedWarnings = allWarnings;
     malformedCorrections = [];
   }
-  const { affectedFiles, totalReplacements } = await propagate(map, specs, markers, dryRun);
+  const { affectedFiles, totalReplacements } = await propagate(map, specs, markers, config, dryRun);
   return {
     code,
     map,
@@ -872,4 +892,4 @@ export {
   propagate,
   renumberCommand
 };
-//# sourceMappingURL=chunk-FGJMXOYA.js.map
+//# sourceMappingURL=chunk-2VUVSW6T.js.map

package/dist/chunk-2VUVSW6T.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/commands/renumber.ts","../src/core/renumber/malformed-detector.ts","../src/core/spec-file-utils.ts","../src/core/renumber/types.ts","../src/core/renumber/map-builder.ts","../src/core/renumber/propagator.ts","../src/core/check/glob.ts","../src/core/renumber/reporter.ts","../src/core/check/marker-scanner.ts","../src/core/check/spec-parser.ts","../src/core/check/types.ts","../src/core/trace/scanner.ts"],"sourcesContent":["// @awa-component: RENUM-RenumberCommand\n// @awa-impl: RENUM-8_AC-1, RENUM-8_AC-2\n// @awa-impl: RENUM-9_AC-1, RENUM-9_AC-2, RENUM-9_AC-3, RENUM-9_AC-4\n// @awa-impl: RENUM-10_AC-1\n\nimport { readFile } from 'node:fs/promises';\n\nimport { correctMalformed, detectMalformed } from '../core/renumber/malformed-detector.js';\nimport { buildRenumberMap } from '../core/renumber/map-builder.js';\nimport { propagate } from '../core/renumber/propagator.js';\nimport { formatJson, formatText } from '../core/renumber/reporter.js';\nimport type { RenumberCommandOptions, RenumberResult } from '../core/renumber/types.js';\nimport { RenumberError } from '../core/renumber/types.js';\nimport { scan } from '../core/trace/scanner.js';\nimport { logger } from '../utils/logger.js';\n\n/**\n * Execute the `awa renumber` command.\n * Returns exit code: 0 = no changes needed, 1 = changes applied/previewed, 2 = error.\n */\n// @awa-impl: RENUM-10_AC-1\nexport async function renumberCommand(options: RenumberCommandOptions): Promise<number> {\n  try {\n    // @awa-impl: RENUM-9_AC-3\n    if (!options.code && !options.all) {\n      logger.error('No feature code or --all specified');\n      return 2;\n    }\n\n    const { markers, specs, config } = await scan(options.config);\n\n    // Determine which codes to renumber\n    // @awa-impl: RENUM-8_AC-1\n    let codes: string[];\n    if (options.all) {\n      codes = discoverFeatureCodes(specs.specFiles);\n      if (codes.length === 0) {\n        logger.warn('No feature codes discovered from REQ files');\n        return 0;\n      }\n    } else {\n      codes = [options.code as string];\n    }\n\n    const dryRun = options.dryRun === true;\n    const fixMalformed = options.expandUnambiguousIds === true;\n    const results: RenumberResult[] = [];\n    let hasChanges = false;\n\n    // @awa-impl: RENUM-8_AC-2\n    for (const code of codes) {\n      try {\n        const result = await runRenumberPipeline(\n          code,\n          specs,\n          markers,\n          config,\n          dryRun,\n          fixMalformed,\n        );\n        results.push(result);\n        if (!result.noChange) {\n          hasChanges = true;\n        }\n      } catch (err) {\n        if (err instanceof RenumberError && err.errorCode === 'CODE_NOT_FOUND') {\n          // @awa-impl: RENUM-9_AC-4\n          logger.error(err.message);\n          return 2;\n        }\n        throw err;\n      }\n    }\n\n    // Output results\n    if (options.json) {\n      // JSON mode: output array if --all, single object otherwise\n      if (results.length === 1) {\n        const first = results[0] as RenumberResult;\n        process.stdout.write(`${formatJson(first)}\\n`);\n      } else {\n        const jsonArray = results.map((r) => JSON.parse(formatJson(r)));\n        process.stdout.write(`${JSON.stringify(jsonArray, null, 2)}\\n`);\n      }\n    } else {\n      for (const result of results) {\n        const text = formatText(result, dryRun);\n        logger.info(text);\n      }\n    }\n\n    // @awa-impl: RENUM-10_AC-1\n    return hasChanges ? 1 : 0;\n  } catch (err) {\n    if (err instanceof RenumberError) {\n      logger.error(err.message);\n      return 2;\n    }\n    if (err instanceof Error) {\n      logger.error(err.message);\n    } else {\n      logger.error(String(err));\n    }\n    return 2;\n  }\n}\n\n/**\n * Run the renumber pipeline for a single feature code.\n */\n// @awa-impl: RENUM-9_AC-1\nasync function runRenumberPipeline(\n  code: string,\n  specs: import('../core/check/types.js').SpecParseResult,\n  markers: import('../core/check/types.js').MarkerScanResult,\n  config: import('../core/check/types.js').CheckConfig,\n  dryRun: boolean,\n  fixMalformed: boolean,\n): Promise<RenumberResult> {\n  // Build renumber map\n  const { map, noChange } = buildRenumberMap(code, specs);\n\n  if (noChange) {\n    return {\n      code,\n      map,\n      affectedFiles: [],\n      totalReplacements: 0,\n      malformedWarnings: [],\n      malformedCorrections: [],\n      noChange: true,\n    };\n  }\n\n  // Detect malformed IDs from spec and code files\n  const fileContents = await collectFileContents(specs, markers, code);\n  const allWarnings = detectMalformed(code, fileContents);\n\n  // Optionally correct unambiguous malformed IDs before propagation\n  let malformedWarnings: readonly import('../core/renumber/types.js').MalformedWarning[];\n  let malformedCorrections: readonly import('../core/renumber/types.js').MalformedCorrection[];\n\n  if (fixMalformed && allWarnings.length > 0) {\n    const result = await correctMalformed(code, allWarnings, fileContents, dryRun);\n    malformedCorrections = result.corrections;\n    malformedWarnings = result.remainingWarnings;\n  } else {\n    malformedWarnings = allWarnings;\n    malformedCorrections = [];\n  }\n\n  // Propagate changes (after corrections so corrected IDs get renumbered)\n  const { affectedFiles, totalReplacements } = await propagate(map, specs, markers, config, dryRun);\n\n  return {\n    code,\n    map,\n    affectedFiles,\n    totalReplacements,\n    malformedWarnings,\n    malformedCorrections,\n    noChange: false,\n  };\n}\n\n/**\n * Discover all feature codes from REQ files.\n */\nfunction discoverFeatureCodes(\n  specFiles: readonly import('../core/check/types.js').SpecFile[],\n): string[] {\n  const codes = new Set<string>();\n  for (const sf of specFiles) {\n    if (sf.code && /^REQ-/.test(sf.filePath.split('/').pop() ?? '')) {\n      codes.add(sf.code);\n    }\n  }\n  return [...codes].sort();\n}\n\n/**\n * Collect file contents for malformed detection.\n * Reads spec files and code files that have markers for the given code.\n */\nasync function collectFileContents(\n  specs: import('../core/check/types.js').SpecParseResult,\n  markers: import('../core/check/types.js').MarkerScanResult,\n  code: string,\n): Promise<Map<string, string>> {\n  const paths = new Set<string>();\n\n  // Add spec files\n  for (const sf of specs.specFiles) {\n    paths.add(sf.filePath);\n  }\n\n  // Add code files with markers starting with the code prefix\n  for (const m of markers.markers) {\n    if (m.id.startsWith(`${code}-`) || m.id.startsWith(`${code}_`)) {\n      paths.add(m.filePath);\n    }\n  }\n\n  const contents = new Map<string, string>();\n  for (const p of paths) {\n    try {\n      const content = await readFile(p, 'utf-8');\n      contents.set(p, content);\n    } catch {\n      // Skip unreadable files\n    }\n  }\n\n  return contents;\n}\n","// @awa-component: RENUM-MalformedDetector\n// @awa-impl: RENUM-12_AC-1, RENUM-12_AC-2, RENUM-12_AC-3\n\nimport { writeFile } from 'node:fs/promises';\n\nimport type { MalformedCorrection, MalformedWarning } from './types.js';\n\n/**\n * Standard ID patterns that are considered valid.\n * - CODE-N (requirement)\n * - CODE-N.P (subrequirement)\n * - CODE-N_AC-M or CODE-N.P_AC-M (acceptance criterion)\n * - CODE_P-N (property)\n * - CODE-ComponentName (component — PascalCase name after code)\n */\nconst VALID_ID_RE = /^[A-Z][A-Z0-9]*(?:-\\d+(?:\\.\\d+)?(?:_AC-\\d+)?|_P-\\d+|-[A-Z][a-zA-Z0-9]*)$/;\n\n/**\n * Patterns that can be unambiguously expanded into valid IDs:\n *\n * - Slash ranges on ACs: CODE-N_AC-M/P or CODE-N.S_AC-M/P\n *   e.g. ARC-36_AC-8/9 → ARC-36_AC-8, ARC-36_AC-9\n *\n * - Dot-dot ranges on ACs: CODE-N_AC-M..P or CODE-N.S_AC-M..P\n *   e.g. ARC-18_AC-14..16 → ARC-18_AC-14, ARC-18_AC-15, ARC-18_AC-16\n */\n\n/** Slash range on ACs: e.g. ARC-36_AC-8/9 */\nconst SLASH_RANGE_RE = /^([A-Z][A-Z0-9]*-\\d+(?:\\.\\d+)?_AC-)(\\d+)\\/(\\d+)$/;\n\n/** Dot-dot range on ACs: e.g. ARC-18_AC-14..16 */\nconst DOT_DOT_AC_RANGE_RE = /^([A-Z][A-Z0-9]*-\\d+(?:\\.\\d+)?_AC-)(\\d+)\\.\\.(\\d+)$/;\n\n/**\n * Detect tokens that start with the feature code prefix but do not conform\n * to standard ID formats. Reports each as a warning with location.\n */\n// @awa-impl: RENUM-12_AC-1, RENUM-12_AC-2\nexport function detectMalformed(\n  code: string,\n  fileContents: ReadonlyMap<string, string>,\n): readonly MalformedWarning[] {\n  const warnings: MalformedWarning[] = [];\n\n  // Match tokens that structurally resemble IDs:\n  //   CODE-<Uppercase-or-digit>...  (requirement-like or component-like)\n  //   CODE_P-...                    (property-like)\n  // Tokens like CODE-lowercase (e.g. CLI-provided) are natural language, not IDs.\n  const esc = escapeRegex(code);\n  const tokenRegex = new RegExp(\n    `(?<![A-Za-z0-9_.-])(?:${esc}-[A-Z0-9][A-Za-z0-9_./-]*|${esc}_P-[A-Za-z0-9_./-]+)`,\n    'g',\n  );\n\n  for (const [filePath, content] of fileContents) {\n    const lines = content.split('\\n');\n    for (let i = 0; i < lines.length; i++) {\n      const line = lines[i] as string;\n      let match: RegExpExecArray | null;\n      while ((match = tokenRegex.exec(line)) !== null) {\n        const token = match[0];\n        // @awa-impl: RENUM-12_AC-3\n        if (!VALID_ID_RE.test(token)) {\n          warnings.push({ filePath, line: i + 1, token });\n        }\n      }\n    }\n  }\n\n  return warnings;\n}\n\n/**\n * Attempt to expand a single malformed token into its corrected replacement string.\n * Returns the replacement string if unambiguous, or `undefined` if the pattern\n * is ambiguous and should remain as a warning only.\n *\n * Correctable patterns:\n * - Slash ranges: CODE-N_AC-M/P → \"CODE-N_AC-M, CODE-N_AC-P\"\n * - Dot-dot AC ranges: CODE-N_AC-M..P → \"CODE-N_AC-M, CODE-N_AC-M+1, ..., CODE-N_AC-P\"\n *\n * Ambiguous / ignored patterns (return undefined):\n * - Trailing periods (e.g. ARC_P-206.) — likely end of sentence\n * - Letter suffixes (e.g. ARC-18_AC-7a)\n * - Full-ID ranges (e.g. ARC-20..ARC-25)\n * - Component + period (e.g. ARC-ChunkedTransferManager.)\n */\nexport function expandMalformedToken(token: string): string | undefined {\n  // Try slash range: CODE-N_AC-M/P\n  const slashMatch = SLASH_RANGE_RE.exec(token);\n  if (slashMatch) {\n    const [, prefix, startStr, endStr] = slashMatch as RegExpExecArray &\n      [string, string, string, string];\n    return `${prefix}${startStr}, ${prefix}${endStr}`;\n  }\n\n  // Try dot-dot AC range: CODE-N_AC-M..P\n  const dotDotMatch = DOT_DOT_AC_RANGE_RE.exec(token);\n  if (dotDotMatch) {\n    const [, prefix, startStr, endStr] = dotDotMatch as RegExpExecArray &\n      [string, string, string, string];\n    const start = Number(startStr);\n    const end = Number(endStr);\n    if (end <= start) return undefined; // Invalid range\n    const ids: string[] = [];\n    for (let n = start; n <= end; n++) {\n      ids.push(`${prefix}${n}`);\n    }\n    return ids.join(', ');\n  }\n\n  // All other patterns are ambiguous — do not correct\n  return undefined;\n}\n\n/**\n * Apply malformed ID corrections to file contents.\n * Only corrects tokens for which `expandMalformedToken` returns a value.\n * Returns the list of corrections applied and the updated file contents map.\n *\n * When `dryRun` is true, files are not written to disk but corrections are\n * still computed and returned for preview.\n */\nexport async function correctMalformed(\n  _code: string,\n  warnings: readonly MalformedWarning[],\n  fileContents: ReadonlyMap<string, string>,\n  dryRun: boolean,\n): Promise<{\n  corrections: readonly MalformedCorrection[];\n  remainingWarnings: readonly MalformedWarning[];\n}> {\n  const corrections: MalformedCorrection[] = [];\n  const remainingWarnings: MalformedWarning[] = [];\n\n  // Group warnings by file for efficient batch replacement\n  const warningsByFile = new Map<string, MalformedWarning[]>();\n  for (const w of warnings) {\n    const existing = warningsByFile.get(w.filePath) ?? [];\n    existing.push(w);\n    warningsByFile.set(w.filePath, existing);\n  }\n\n  // Track files that need writing\n  const modifiedFiles = new Map<string, string>();\n\n  for (const [filePath, fileWarnings] of warningsByFile) {\n    const original = fileContents.get(filePath);\n    if (original === undefined) {\n      // Cannot correct — keep as warnings\n      remainingWarnings.push(...fileWarnings);\n      continue;\n    }\n\n    let content: string = original;\n\n    for (const w of fileWarnings) {\n      const replacement = expandMalformedToken(w.token);\n      if (replacement === undefined) {\n        remainingWarnings.push(w);\n        continue;\n      }\n\n      // Replace the token in content (whole-token match to avoid partial substitution)\n      const escaped = escapeRegex(w.token);\n      const regex = new RegExp(`(?<![A-Za-z0-9_.-])${escaped}(?![A-Za-z0-9_.-])`, 'g');\n      const updated: string = content.replace(regex, replacement);\n      if (updated !== content) {\n        content = updated;\n        corrections.push({\n          filePath: w.filePath,\n          line: w.line,\n          token: w.token,\n          replacement,\n        });\n      } else {\n        // Token not found in content (unexpected) — keep as warning\n        remainingWarnings.push(w);\n      }\n    }\n\n    if (content !== original) {\n      modifiedFiles.set(filePath, content);\n    }\n  }\n\n  // Write modified files unless dry-run\n  if (!dryRun) {\n    for (const [filePath, content] of modifiedFiles) {\n      await writeFile(filePath, content, 'utf-8');\n    }\n  }\n\n  return { corrections, remainingWarnings };\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\n}\n","// @awa-impl: RENUM-1_AC-1\n// @awa-impl: RCOD-1_AC-1\n\nimport { basename } from 'node:path';\n\nimport type { SpecFile } from './check/types.js';\n\n/**\n * Find all spec files matching a feature code and file type prefix.\n * Returns files sorted alphabetically by basename for deterministic ordering.\n */\nexport function findSpecFiles(\n  specFiles: readonly SpecFile[],\n  code: string,\n  prefix: string,\n): SpecFile[] {\n  return specFiles\n    .filter((sf) => {\n      const name = basename(sf.filePath);\n      return name.startsWith(`${prefix}-${code}-`);\n    })\n    .sort((a, b) => basename(a.filePath).localeCompare(basename(b.filePath)));\n}\n\n/**\n * Find the first spec file matching a feature code and file type prefix.\n * Convenience wrapper over findSpecFiles for cases needing a single match.\n */\nexport function findSpecFile(\n  specFiles: readonly SpecFile[],\n  code: string,\n  prefix: string,\n): SpecFile | undefined {\n  return findSpecFiles(specFiles, code, prefix)[0];\n}\n\n/** Known spec file prefixes that carry a feature code. */\nexport const SPEC_PREFIXES = ['FEAT', 'REQ', 'DESIGN', 'EXAMPLE', 'API', 'TASK'] as const;\n\n/**\n * Check whether at least one spec file exists for the given feature code.\n */\nexport function hasAnySpecFile(specFiles: readonly SpecFile[], code: string): boolean {\n  return specFiles.some((sf) => {\n    const name = basename(sf.filePath);\n    return SPEC_PREFIXES.some((prefix) => name.startsWith(`${prefix}-${code}-`));\n  });\n}\n","// Types shared across the renumber module.\n// Components are declared in their respective implementation files.\n\n/**\n * Mapping from old ID strings to new ID strings for one feature code.\n */\nexport interface RenumberMap {\n  readonly code: string;\n  readonly entries: ReadonlyMap<string, string>;\n}\n\n/**\n * A file touched by propagation with per-line replacement details.\n */\nexport interface AffectedFile {\n  readonly filePath: string;\n  readonly replacements: readonly Replacement[];\n}\n\n/**\n * A single ID replacement within a file.\n */\nexport interface Replacement {\n  readonly line: number;\n  readonly oldId: string;\n  readonly newId: string;\n}\n\n/**\n * Aggregated output of the renumber pipeline for one feature code.\n */\nexport interface RenumberResult {\n  readonly code: string;\n  readonly map: RenumberMap;\n  readonly affectedFiles: readonly AffectedFile[];\n  readonly totalReplacements: number;\n  readonly malformedWarnings: readonly MalformedWarning[];\n  readonly malformedCorrections: readonly MalformedCorrection[];\n  readonly noChange: boolean;\n}\n\n/**\n * CLI options passed to the renumber command.\n */\nexport interface RenumberCommandOptions {\n  readonly code?: string;\n  readonly all?: boolean;\n  readonly dryRun?: boolean;\n  readonly json?: boolean;\n  readonly config?: string;\n  readonly expandUnambiguousIds?: boolean;\n}\n\n/**\n * Warning about a malformed ID token.\n */\nexport interface MalformedWarning {\n  readonly filePath: string;\n  readonly line: number;\n  readonly token: string;\n}\n\n/**\n * A correction applied to a malformed ID token.\n */\nexport interface MalformedCorrection {\n  readonly filePath: string;\n  readonly line: number;\n  readonly token: string;\n  readonly replacement: string;\n}\n\n/**\n * Result of map building.\n */\nexport interface MapBuildResult {\n  readonly map: RenumberMap;\n  readonly noChange: boolean;\n}\n\n/**\n * Result of propagation.\n */\nexport interface PropagationResult {\n  readonly affectedFiles: readonly AffectedFile[];\n  readonly totalReplacements: number;\n}\n\n// --- Error types ---\n\nexport type RenumberErrorCode = 'CODE_NOT_FOUND' | 'NO_ARGS' | 'WRITE_FAILED';\n\nexport class RenumberError extends Error {\n  readonly errorCode: RenumberErrorCode;\n\n  constructor(errorCode: RenumberErrorCode, message: string) {\n    super(message);\n    this.name = 'RenumberError';\n    this.errorCode = errorCode;\n  }\n}\n","// @awa-component: RENUM-MapBuilder\n// @awa-impl: RENUM-1_AC-1, RENUM-1_AC-2, RENUM-1_AC-3\n// @awa-impl: RENUM-2_AC-1, RENUM-2_AC-2\n// @awa-impl: RENUM-3_AC-1, RENUM-3_AC-2\n// @awa-impl: RENUM-4_AC-1, RENUM-4_AC-2\n\nimport type { SpecFile, SpecParseResult } from '../check/types.js';\nimport { findSpecFiles } from '../spec-file-utils.js';\nimport type { MapBuildResult, RenumberMap } from './types.js';\nimport { RenumberError } from './types.js';\n\n/**\n * Build a renumber map by walking ALL REQ and DESIGN files in document order.\n * Files are sorted alphabetically by basename. Requirements and properties are\n * numbered globally across all files for the feature code.\n */\n// @awa-impl: RENUM-1_AC-1\nexport function buildRenumberMap(code: string, specs: SpecParseResult): MapBuildResult {\n  const reqFiles = findSpecFiles(specs.specFiles, code, 'REQ');\n  if (reqFiles.length === 0) {\n    throw new RenumberError('CODE_NOT_FOUND', `No REQ file found for feature code: ${code}`);\n  }\n\n  const entries = new Map<string, string>();\n\n  // Walk ALL REQ files in alphabetical order for requirements, subrequirements, and ACs\n  buildRequirementEntries(code, reqFiles, entries);\n\n  // Walk ALL DESIGN files in alphabetical order for properties\n  // @awa-impl: RENUM-4_AC-1, RENUM-4_AC-2\n  const designFiles = findSpecFiles(specs.specFiles, code, 'DESIGN');\n  if (designFiles.length > 0) {\n    buildPropertyEntries(code, designFiles, entries);\n  }\n  // If no DESIGN file exists, skip property renumbering without error (RENUM-4_AC-2)\n\n  // Remove identity mappings (old === new)\n  for (const [oldId, newId] of entries) {\n    if (oldId === newId) {\n      entries.delete(oldId);\n    }\n  }\n\n  // @awa-impl: RENUM-1_AC-3\n  const noChange = entries.size === 0;\n\n  const map: RenumberMap = { code, entries };\n  return { map, noChange };\n}\n\n/**\n * Build renumber entries for requirements, subrequirements, and ACs from all REQ files.\n * Files are processed in the order given (already sorted alphabetically).\n * IDs are numbered globally across all files.\n */\n// @awa-impl: RENUM-1_AC-2, RENUM-2_AC-1, RENUM-2_AC-2, RENUM-3_AC-1, RENUM-3_AC-2\nfunction buildRequirementEntries(\n  code: string,\n  reqFiles: readonly SpecFile[],\n  entries: Map<string, string>,\n): void {\n  // Collect all requirements and subrequirements across files in order\n  const topLevelReqs: string[] = [];\n  const subReqsByParent = new Map<string, string[]>();\n  const allAcIds: string[] = [];\n\n  for (const reqFile of reqFiles) {\n    for (const id of reqFile.requirementIds) {\n      if (id.includes('.')) {\n        const dotIdx = id.lastIndexOf('.');\n        const parent = id.slice(0, dotIdx);\n        const subs = subReqsByParent.get(parent) ?? [];\n        subs.push(id);\n        subReqsByParent.set(parent, subs);\n      } else {\n        topLevelReqs.push(id);\n      }\n    }\n    for (const acId of reqFile.acIds) {\n      allAcIds.push(acId);\n    }\n  }\n\n  // Build old→new mapping for top-level requirements\n  const reqNumberMap = new Map<string, number>(); // old req ID → new number\n  for (let i = 0; i < topLevelReqs.length; i++) {\n    const oldId = topLevelReqs[i] as string;\n    const newNum = i + 1;\n    const newId = `${code}-${newNum}`;\n    entries.set(oldId, newId);\n    reqNumberMap.set(oldId, newNum);\n  }\n\n  // Build old→new mapping for subrequirements within each parent\n  for (const oldParentId of topLevelReqs) {\n    const subs = subReqsByParent.get(oldParentId);\n    if (!subs) continue;\n\n    const newParentNum = reqNumberMap.get(oldParentId);\n    if (newParentNum === undefined) continue;\n\n    for (let j = 0; j < subs.length; j++) {\n      const oldSubId = subs[j] as string;\n      const newSubNum = j + 1;\n      const newSubId = `${code}-${newParentNum}.${newSubNum}`;\n      entries.set(oldSubId, newSubId);\n    }\n  }\n\n  // Build AC mapping: group ACs by their parent (req or subreq)\n  const acsByParent = new Map<string, string[]>();\n  for (const acId of allAcIds) {\n    const parent = acId.split('_AC-')[0] as string;\n    const acs = acsByParent.get(parent) ?? [];\n    acs.push(acId);\n    acsByParent.set(parent, acs);\n  }\n\n  // Renumber ACs within each parent\n  for (const [oldParentId, acs] of acsByParent) {\n    // Determine the new parent ID\n    const newParentId = entries.get(oldParentId) ?? oldParentId;\n\n    for (let k = 0; k < acs.length; k++) {\n      const oldAcId = acs[k] as string;\n      const newAcNum = k + 1;\n      const newAcId = `${newParentId}_AC-${newAcNum}`;\n      entries.set(oldAcId, newAcId);\n    }\n  }\n}\n\n/**\n * Build renumber entries for properties from all DESIGN files.\n * Files are processed in the order given (already sorted alphabetically).\n * Properties are numbered globally across all files.\n */\nfunction buildPropertyEntries(\n  code: string,\n  designFiles: readonly SpecFile[],\n  entries: Map<string, string>,\n): void {\n  let counter = 0;\n  for (const designFile of designFiles) {\n    for (const oldId of designFile.propertyIds) {\n      counter++;\n      const newId = `${code}_P-${counter}`;\n      entries.set(oldId, newId);\n    }\n  }\n}\n","// @awa-component: RENUM-Propagator\n// @awa-impl: RENUM-5_AC-1, RENUM-5_AC-2, RENUM-5_AC-3\n// @awa-impl: RENUM-6_AC-1, RENUM-6_AC-2\n\nimport { readFile, writeFile } from 'node:fs/promises';\n\nimport { collectFiles } from '../check/glob.js';\nimport type { CheckConfig, MarkerScanResult, SpecParseResult } from '../check/types.js';\nimport type { AffectedFile, PropagationResult, RenumberMap, Replacement } from './types.js';\nimport { RenumberError } from './types.js';\n\n/**\n * Apply the renumber map across all spec files and code files.\n * Uses two-pass placeholder replacement to avoid swap collisions.\n */\nexport async function propagate(\n  map: RenumberMap,\n  specs: SpecParseResult,\n  markers: MarkerScanResult,\n  config: CheckConfig,\n  dryRun: boolean,\n): Promise<PropagationResult> {\n  if (map.entries.size === 0) {\n    return { affectedFiles: [], totalReplacements: 0 };\n  }\n\n  // Collect all file paths that need scanning\n  const filePaths = await collectFilePaths(map, specs, markers, config);\n\n  const affectedFiles: AffectedFile[] = [];\n  let totalReplacements = 0;\n\n  for (const filePath of filePaths) {\n    let content: string;\n    try {\n      content = await readFile(filePath, 'utf-8');\n    } catch {\n      continue; // Skip unreadable files\n    }\n\n    const result = applyReplacements(content, map);\n    if (result.replacements.length === 0) continue;\n\n    affectedFiles.push({ filePath, replacements: result.replacements });\n    totalReplacements += result.replacements.length;\n\n    if (!dryRun) {\n      try {\n        await writeFile(filePath, result.newContent, 'utf-8');\n      } catch (err) {\n        const msg = err instanceof Error ? err.message : String(err);\n        throw new RenumberError('WRITE_FAILED', `Failed to write ${filePath}: ${msg}`);\n      }\n    }\n  }\n\n  return { affectedFiles, totalReplacements };\n}\n\n/**\n * Collect unique file paths that may contain IDs needing replacement.\n * Includes all spec files (any may reference the code's IDs in matrices,\n * prose, or cross-references), extra spec files from extraSpecGlobs,\n * and code files with relevant markers.\n */\n// @awa-impl: RENUM-5_AC-1, RENUM-5_AC-2, RENUM-5_AC-3\nasync function collectFilePaths(\n  map: RenumberMap,\n  specs: SpecParseResult,\n  markers: MarkerScanResult,\n  config: CheckConfig,\n): Promise<string[]> {\n  const paths = new Set<string>();\n  const code = map.code;\n\n  // Include all spec files — any may contain IDs in matrices, prose, or cross-refs.\n  // The replacement pass efficiently skips files with no matches.\n  // @awa-impl: RENUM-5_AC-1, RENUM-5_AC-3\n  for (const specFile of specs.specFiles) {\n    paths.add(specFile.filePath);\n  }\n\n  // Include extra spec files from extraSpecGlobs (custom files in .awa/ not matched by specGlobs)\n  const combinedIgnore = [...config.specIgnore, ...config.extraSpecIgnore];\n  const extraFiles = await collectFiles(config.extraSpecGlobs, combinedIgnore);\n  for (const filePath of extraFiles) {\n    paths.add(filePath);\n  }\n\n  // Add code/test files that have markers referencing affected IDs\n  // @awa-impl: RENUM-5_AC-2\n  const affectedIds = new Set(map.entries.keys());\n  for (const marker of markers.markers) {\n    if (affectedIds.has(marker.id) || hasCodePrefix(marker.id, code)) {\n      paths.add(marker.filePath);\n    }\n  }\n\n  return [...paths];\n}\n\n/**\n * Apply two-pass placeholder replacement to file content.\n * Pass 1: Replace old IDs with unique placeholders.\n * Pass 2: Replace placeholders with new IDs.\n * Uses whole-ID boundary matching to avoid partial replacements.\n */\n// @awa-impl: RENUM-6_AC-1, RENUM-6_AC-2\nfunction applyReplacements(\n  content: string,\n  map: RenumberMap,\n): { newContent: string; replacements: Replacement[] } {\n  const replacements: Replacement[] = [];\n  const lines = content.split('\\n');\n\n  // Build sorted entries: replace longer IDs first to avoid partial matches\n  const sortedEntries = [...map.entries].sort(([a], [b]) => b.length - a.length);\n\n  // Build placeholder map: old ID → placeholder → new ID\n  const placeholders = new Map<string, string>();\n  const placeholderToNew = new Map<string, string>();\n  for (const [oldId, newId] of sortedEntries) {\n    const placeholder = `__RENUM_${placeholders.size}__`;\n    placeholders.set(oldId, placeholder);\n    placeholderToNew.set(placeholder, newId);\n  }\n\n  // Single pass per line: replace old IDs with placeholders, then placeholders with new IDs.\n  // This avoids holding separate pass1Lines and pass2Lines arrays (reduces from 4× to 2× memory).\n  for (let idx = 0; idx < lines.length; idx++) {\n    let modified = lines[idx] as string;\n    const origLine = modified;\n\n    // Phase 1: Replace old IDs with placeholders and track replacements\n    for (const [oldId, placeholder] of placeholders) {\n      const regex = buildWholeIdRegex(oldId);\n      // Count matches on original line for tracking\n      const trackRegex = buildWholeIdRegex(oldId);\n      while (trackRegex.exec(origLine) !== null) {\n        replacements.push({\n          line: idx + 1,\n          oldId,\n          newId: map.entries.get(oldId) ?? oldId,\n        });\n      }\n      modified = modified.replace(regex, placeholder);\n    }\n\n    // Phase 2: Replace placeholders with new IDs\n    for (const [placeholder, newId] of placeholderToNew) {\n      modified = modified.replaceAll(placeholder, newId);\n    }\n\n    lines[idx] = modified;\n  }\n\n  // Deduplicate replacements per line (same oldId on same line counted once)\n  const seen = new Set<string>();\n  const dedupedReplacements = replacements.filter((r) => {\n    const key = `${r.line}:${r.oldId}`;\n    if (seen.has(key)) return false;\n    seen.add(key);\n    return true;\n  });\n\n  return { newContent: lines.join('\\n'), replacements: dedupedReplacements };\n}\n\n/**\n * Build a regex that matches a whole ID with boundary assertions.\n * Prevents partial matches within unrelated tokens.\n */\nfunction buildWholeIdRegex(id: string): RegExp {\n  const escaped = id.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\n  // Word boundary won't work across hyphens/underscores, so use lookahead/lookbehind\n  // Match the ID when not preceded or followed by alphanumeric, hyphen, underscore, or dot\n  return new RegExp(`(?<![A-Za-z0-9_.-])${escaped}(?![A-Za-z0-9_.-])`, 'g');\n}\n\n/**\n * Check if an ID starts with the given feature code prefix.\n */\nfunction hasCodePrefix(id: string, code: string): boolean {\n  return id.startsWith(`${code}-`) || id.startsWith(`${code}_`);\n}\n","// @awa-component: CLI-MarkerScanner\n// @awa-impl: CLI-28_AC-1\n\nimport { glob } from 'node:fs/promises';\n\n/**\n * Matches a path against a simple glob pattern supporting * and **.\n * Also matches a directory prefix against `dir/**` patterns (e.g. \"src\" matches \"src/**\").\n */\nexport function matchSimpleGlob(path: string, pattern: string): boolean {\n  const regex = pattern\n    .replace(/[.+^${}()|[\\]\\\\]/g, '\\\\$&')\n    .replace(/\\*\\*/g, '<<GLOBSTAR>>')\n    .replace(/\\*/g, '[^/]*')\n    .replace(/<<GLOBSTAR>>/g, '.*');\n  return new RegExp(`(^|/)${regex}($|/)`).test(path);\n}\n\n/**\n * Collect files matching globs while applying ignore patterns.\n * Uses fs.glob exclude callback for directory-level skipping (perf optimization)\n * and post-filters results for file-level ignore matching.\n */\nexport async function collectFiles(\n  globs: readonly string[],\n  ignore: readonly string[],\n): Promise<string[]> {\n  const files: string[] = [];\n\n  // For exclude callback, also match directory prefixes (e.g. \"src\" for \"src/**\")\n  const dirPrefixes = ignore.filter((ig) => ig.endsWith('/**')).map((ig) => ig.slice(0, -3));\n\n  // Pre-compile ignore patterns to RegExp objects to avoid re-creating them on every callback invocation\n  const compiledIgnore = ignore.map((ig) => {\n    const regex = ig\n      .replace(/[.+^${}()|[\\]\\\\]/g, '\\\\$&')\n      .replace(/\\*\\*/g, '<<GLOBSTAR>>')\n      .replace(/\\*/g, '[^/]*')\n      .replace(/<<GLOBSTAR>>/g, '.*');\n    return new RegExp(`(^|/)${regex}($|/)`);\n  });\n\n  for (const pattern of globs) {\n    for await (const filePath of glob(pattern, {\n      exclude: (p) => dirPrefixes.includes(p) || compiledIgnore.some((re) => re.test(p)),\n    })) {\n      // Post-filter: fs.glob exclude only receives directory names,\n      // so we must also filter the yielded file paths\n      if (!compiledIgnore.some((re) => re.test(filePath))) {\n        files.push(filePath);\n      }\n    }\n  }\n\n  return [...new Set(files)];\n}\n","// @awa-component: RENUM-Reporter\n// @awa-impl: RENUM-7_AC-1\n// @awa-impl: RENUM-11_AC-1\n\nimport type { RenumberResult } from './types.js';\n\n/**\n * Format renumber results as human-readable text.\n * In dry-run mode, prefixes output with a banner.\n */\n// @awa-impl: RENUM-7_AC-1\nexport function formatText(result: RenumberResult, dryRun: boolean): string {\n  const lines: string[] = [];\n\n  if (dryRun) {\n    lines.push('DRY RUN — no files were modified\\n');\n  }\n\n  if (result.noChange) {\n    lines.push(`${result.code}: no changes needed (IDs already sequential)`);\n    return lines.join('\\n');\n  }\n\n  // Renumber map table\n  lines.push(`${result.code}: ${result.map.entries.size} ID(s) renumbered\\n`);\n  lines.push('  Old ID → New ID');\n  lines.push(`  ${'─'.repeat(40)}`);\n  for (const [oldId, newId] of result.map.entries) {\n    lines.push(`  ${oldId} → ${newId}`);\n  }\n\n  // Affected files\n  if (result.affectedFiles.length > 0) {\n    lines.push('');\n    lines.push(\n      `  ${result.totalReplacements} replacement(s) in ${result.affectedFiles.length} file(s):`,\n    );\n    for (const file of result.affectedFiles) {\n      lines.push(`    ${file.filePath} (${file.replacements.length})`);\n    }\n  }\n\n  // Malformed corrections\n  if (result.malformedCorrections.length > 0) {\n    lines.push('');\n    lines.push('  Malformed ID corrections:');\n    for (const c of result.malformedCorrections) {\n      lines.push(`    ${c.filePath}:${c.line} — ${c.token} → ${c.replacement}`);\n    }\n  }\n\n  // Malformed warnings\n  if (result.malformedWarnings.length > 0) {\n    lines.push('');\n    lines.push('  Malformed ID warnings:');\n    for (const w of result.malformedWarnings) {\n      lines.push(`    ${w.filePath}:${w.line} — ${w.token}`);\n    }\n  }\n\n  return lines.join('\\n');\n}\n\n/**\n * Format renumber results as JSON for CI consumption.\n */\n// @awa-impl: RENUM-11_AC-1\nexport function formatJson(result: RenumberResult): string {\n  const output = {\n    code: result.code,\n    noChange: result.noChange,\n    map: Object.fromEntries(result.map.entries),\n    affectedFiles: result.affectedFiles.map((f) => ({\n      filePath: f.filePath,\n      replacements: f.replacements.map((r) => ({\n        line: r.line,\n        oldId: r.oldId,\n        newId: r.newId,\n      })),\n    })),\n    totalReplacements: result.totalReplacements,\n    malformedCorrections: result.malformedCorrections.map((c) => ({\n      filePath: c.filePath,\n      line: c.line,\n      token: c.token,\n      replacement: c.replacement,\n    })),\n    malformedWarnings: result.malformedWarnings.map((w) => ({\n      filePath: w.filePath,\n      line: w.line,\n      token: w.token,\n    })),\n  };\n\n  return JSON.stringify(output, null, 2);\n}\n","// @awa-component: CLI-MarkerScanner\n// @awa-impl: CLI-16_AC-1\n// @awa-impl: CLI-26_AC-1\n// @awa-impl: CLI-28_AC-1\n\nimport { readFile } from 'node:fs/promises';\n\nimport { collectFiles, matchSimpleGlob } from './glob.js';\nimport type { CheckConfig, CodeMarker, Finding, MarkerScanResult, MarkerType } from './types.js';\n\nconst MARKER_TYPE_MAP: Record<string, MarkerType> = {\n  '@awa-impl': 'impl',\n  '@awa-test': 'test',\n  '@awa-component': 'component',\n};\n\n/** Ignore directive patterns (similar to eslint-disable comments). */\n// Use RegExp constructor so the literal token does not appear in this source file,\n// preventing the marker scanner from self-ignoring when it scans its own code.\nconst IGNORE_FILE_RE = new RegExp('@awa-ignore' + '-file\\\\b');\nconst IGNORE_NEXT_LINE_RE = /@awa-ignore-next-line\\b/;\nconst IGNORE_LINE_RE = /@awa-ignore\\b/;\nconst IGNORE_START_RE = /@awa-ignore-start\\b/;\nconst IGNORE_END_RE = /@awa-ignore-end\\b/;\n\n// @awa-impl: CLI-16_AC-1\nexport async function scanMarkers(config: CheckConfig): Promise<MarkerScanResult> {\n  const files = await collectCodeFiles(config.codeGlobs, config.codeIgnore);\n  const markers: CodeMarker[] = [];\n  const findings: Finding[] = [];\n\n  for (const filePath of files) {\n    // Skip files matching ignoreMarkers globs\n    if (config.ignoreMarkers.some((ig) => matchSimpleGlob(filePath, ig))) {\n      continue;\n    }\n\n    const result = await scanFile(filePath, config.markers);\n    markers.push(...result.markers);\n    findings.push(...result.findings);\n  }\n\n  return { markers, findings };\n}\n\n// @awa-impl: CLI-26_AC-1\nfunction buildMarkerRegex(markerNames: readonly string[]): RegExp {\n  const escaped = markerNames.map((m) => m.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&'));\n  // Match marker followed by colon, then capture the rest of the line (IDs)\n  return new RegExp(`(${escaped.join('|')}):\\\\s*(.+)`, 'g');\n}\n\n/** Pattern matching valid impl/test IDs and component names. */\nconst ID_TOKEN_RE = /^([A-Z][A-Z0-9]*(?:[-_][A-Za-z0-9]+)*(?:\\.\\d+)?(?:[-_][A-Za-z0-9]+)*)/;\n\nasync function scanFile(\n  filePath: string,\n  markerNames: readonly string[],\n): Promise<{ markers: CodeMarker[]; findings: Finding[] }> {\n  let content: string;\n  try {\n    content = await readFile(filePath, 'utf-8');\n  } catch {\n    return { markers: [], findings: [] };\n  }\n\n  // Check for file-level ignore directive anywhere in the file\n  if (IGNORE_FILE_RE.test(content)) {\n    return { markers: [], findings: [] };\n  }\n\n  const regex = buildMarkerRegex(markerNames);\n  const lines = content.split('\\n');\n  const markers: CodeMarker[] = [];\n  const findings: Finding[] = [];\n  let ignoreNextLine = false;\n  let ignoreBlock = false;\n\n  for (const [i, line] of lines.entries()) {\n    // Check for block ignore boundaries\n    if (IGNORE_START_RE.test(line)) {\n      ignoreBlock = true;\n      continue;\n    }\n    if (IGNORE_END_RE.test(line)) {\n      ignoreBlock = false;\n      continue;\n    }\n    if (ignoreBlock) {\n      continue;\n    }\n\n    // Check if previous line had @awa-ignore-next-line\n    if (ignoreNextLine) {\n      ignoreNextLine = false;\n      continue;\n    }\n\n    // Check if this line is an @awa-ignore-next-line directive\n    if (IGNORE_NEXT_LINE_RE.test(line)) {\n      ignoreNextLine = true;\n      continue;\n    }\n\n    // Check for inline @awa-ignore on this line (ignores markers on this line)\n    if (IGNORE_LINE_RE.test(line)) {\n      continue;\n    }\n\n    regex.lastIndex = 0;\n    let match = regex.exec(line);\n\n    while (match !== null) {\n      const markerName = match[1] ?? '';\n      const idsRaw = match[2] ?? '';\n      const type = resolveMarkerType(markerName, markerNames);\n\n      // Split by comma to support multiple IDs per marker line\n      const ids = idsRaw\n        .split(',')\n        .map((id) => id.trim())\n        .filter(Boolean);\n\n      for (const id of ids) {\n        // Extract only the leading ID token\n        const tokenMatch = ID_TOKEN_RE.exec(id);\n        const cleanId = tokenMatch?.[1]?.trim() ?? '';\n        if (cleanId && tokenMatch) {\n          // Check for trailing text after the ID (only whitespace allowed)\n          const remainder = id.slice(tokenMatch[0].length).trim();\n          if (remainder) {\n            findings.push({\n              severity: 'error',\n              code: 'marker-trailing-text',\n              message: `Marker has trailing text after ID '${cleanId}': '${remainder}' — use comma-separated IDs only`,\n              filePath,\n              line: i + 1,\n              id: cleanId,\n            });\n          }\n          markers.push({ type, id: cleanId, filePath, line: i + 1 });\n        }\n      }\n\n      match = regex.exec(line);\n    }\n  }\n\n  return { markers, findings };\n}\n\nfunction resolveMarkerType(markerName: string, configuredMarkers: readonly string[]): MarkerType {\n  // Check default mapping first\n  const mapped = MARKER_TYPE_MAP[markerName];\n  if (mapped) return mapped;\n  // For custom markers, infer type by position in configured array\n  // Default order: [impl, test, component]\n  const idx = configuredMarkers.indexOf(markerName);\n  if (idx === 1) return 'test';\n  if (idx === 2) return 'component';\n  return 'impl';\n}\n\n// @awa-impl: CLI-28_AC-1\nasync function collectCodeFiles(\n  codeGlobs: readonly string[],\n  ignore: readonly string[],\n): Promise<string[]> {\n  return collectFiles(codeGlobs, ignore);\n}\n","// @awa-component: CLI-SpecParser\n// @awa-impl: CLI-17_AC-1\n// @awa-impl: CLI-27_AC-1\n\nimport { readFile } from 'node:fs/promises';\nimport { basename } from 'node:path';\n\nimport { collectFiles } from './glob.js';\nimport type { CheckConfig, CrossReference, SpecFile, SpecParseResult } from './types.js';\n\n// @awa-impl: CLI-17_AC-1\nexport async function parseSpecs(config: CheckConfig): Promise<SpecParseResult> {\n  const files = await collectSpecFiles(config.specGlobs, config.specIgnore);\n  const specFiles: SpecFile[] = [];\n\n  const requirementIds = new Set<string>();\n  const acIds = new Set<string>();\n  const propertyIds = new Set<string>();\n  const componentNames = new Set<string>();\n  const idLocations = new Map<string, { filePath: string; line: number }>();\n\n  for (const filePath of files) {\n    const specFile = await parseSpecFile(filePath, config.crossRefPatterns);\n    if (specFile) {\n      specFiles.push(specFile);\n      for (const id of specFile.requirementIds) requirementIds.add(id);\n      for (const id of specFile.acIds) acIds.add(id);\n      for (const id of specFile.propertyIds) propertyIds.add(id);\n      for (const name of specFile.componentNames) componentNames.add(name);\n      // Merge id locations from parsed spec file\n      for (const [id, loc] of specFile.idLocations ?? []) {\n        idLocations.set(id, loc);\n      }\n    }\n  }\n\n  const allIds = new Set<string>([...requirementIds, ...acIds, ...propertyIds, ...componentNames]);\n\n  return { requirementIds, acIds, propertyIds, componentNames, allIds, specFiles, idLocations };\n}\n\nasync function parseSpecFile(\n  filePath: string,\n  crossRefPatterns: readonly string[],\n): Promise<SpecFile | null> {\n  let content: string;\n  try {\n    content = await readFile(filePath, 'utf-8');\n  } catch {\n    return null;\n  }\n\n  const code = extractCodePrefix(filePath);\n  const lines = content.split('\\n');\n\n  const requirementIds: string[] = [];\n  const acIds: string[] = [];\n  const propertyIds: string[] = [];\n  const componentNames: string[] = [];\n  const crossRefs: CrossReference[] = [];\n  const idLocations = new Map<string, { filePath: string; line: number }>();\n  const componentImplements = new Map<string, string[]>();\n\n  // Requirement ID: ### CODE-N: Title or ### CODE-N.P: Title\n  const reqIdRegex = /^###\\s+([A-Z][A-Z0-9]*-\\d+(?:\\.\\d+)?)\\s*:/;\n  // AC ID: - CODE-N_AC-M or - [ ] CODE-N_AC-M or - [x] CODE-N.P_AC-M\n  const acIdRegex = /^-\\s+(?:\\[[ x]\\]\\s+)?([A-Z][A-Z0-9]*-\\d+(?:\\.\\d+)?_AC-\\d+)\\s/;\n  // Property ID: - CODE_P-N [Name]\n  const propIdRegex = /^-\\s+([A-Z][A-Z0-9]*_P-\\d+)\\s/;\n  // Component name: ### CODE-ComponentName\n  const componentRegex = /^###\\s+([A-Z][A-Z0-9]*-[A-Za-z][A-Za-z0-9]*(?:[A-Z][a-z0-9]*)*)\\s*$/;\n\n  // Track current component for building componentImplements map\n  let currentComponent: string | null = null;\n\n  for (const [i, line] of lines.entries()) {\n    const lineNum = i + 1;\n\n    // Requirement IDs\n    const reqMatch = reqIdRegex.exec(line);\n    if (reqMatch?.[1]) {\n      requirementIds.push(reqMatch[1]);\n      idLocations.set(reqMatch[1], { filePath, line: lineNum });\n    }\n\n    // AC IDs\n    const acMatch = acIdRegex.exec(line);\n    if (acMatch?.[1]) {\n      acIds.push(acMatch[1]);\n      idLocations.set(acMatch[1], { filePath, line: lineNum });\n    }\n\n    // Property IDs\n    const propMatch = propIdRegex.exec(line);\n    if (propMatch?.[1]) {\n      propertyIds.push(propMatch[1]);\n      idLocations.set(propMatch[1], { filePath, line: lineNum });\n    }\n\n    // Component names (from DESIGN files)\n    const compMatch = componentRegex.exec(line);\n    if (compMatch?.[1]) {\n      // Only count as component if it doesn't match requirement pattern\n      if (!reqIdRegex.test(line)) {\n        componentNames.push(compMatch[1]);\n        idLocations.set(compMatch[1], { filePath, line: lineNum });\n        currentComponent = compMatch[1];\n      }\n    }\n\n    // Any H2 or H1 heading resets the current component context\n    if (/^#{1,2}\\s/.test(line) && !compMatch) {\n      currentComponent = null;\n    }\n\n    // Cross-references (IMPLEMENTS:, VALIDATES:)\n    for (const pattern of crossRefPatterns) {\n      const patIdx = line.indexOf(pattern);\n      if (patIdx !== -1) {\n        const afterPattern = line.slice(patIdx + pattern.length);\n        const ids = extractIdsFromText(afterPattern);\n        if (ids.length > 0) {\n          const type = pattern.toLowerCase().includes('implements') ? 'implements' : 'validates';\n          crossRefs.push({ type, ids, filePath, line: i + 1 });\n\n          // Build componentImplements map for IMPLEMENTS lines\n          if (type === 'implements' && currentComponent) {\n            const existing = componentImplements.get(currentComponent) ?? [];\n            existing.push(...ids);\n            componentImplements.set(currentComponent, existing);\n          }\n        }\n      }\n    }\n  }\n\n  return {\n    filePath,\n    code,\n    requirementIds,\n    acIds,\n    propertyIds,\n    componentNames,\n    crossRefs,\n    idLocations,\n    componentImplements,\n    content,\n  };\n}\n\nfunction extractCodePrefix(filePath: string): string {\n  const name = basename(filePath, '.md');\n  // Extract CODE from patterns like REQ-CODE-feature, DESIGN-CODE-feature, FEAT-CODE-feature\n  const match = /^(?:REQ|DESIGN|FEAT|EXAMPLE|API)-([A-Z][A-Z0-9]*)-/.exec(name);\n  if (match?.[1]) return match[1];\n  // Fallback: ARCHITECTURE.md has no code prefix\n  return '';\n}\n\nfunction extractIdsFromText(text: string): string[] {\n  const idRegex = /[A-Z][A-Z0-9]*-\\d+(?:\\.\\d+)?(?:_AC-\\d+)?|[A-Z][A-Z0-9]*_P-\\d+/g;\n  const ids: string[] = [];\n  let match = idRegex.exec(text);\n  while (match !== null) {\n    ids.push(match[0]);\n    match = idRegex.exec(text);\n  }\n  return ids;\n}\n\n// @awa-impl: CLI-27_AC-1\nasync function collectSpecFiles(\n  specGlobs: readonly string[],\n  ignore: readonly string[],\n): Promise<string[]> {\n  return collectFiles(specGlobs, ignore);\n}\n","// @awa-component: CLI-CheckCommand\n\n// @awa-impl: CLI-31_AC-1\nexport interface CheckConfig {\n  readonly specGlobs: readonly string[];\n  readonly codeGlobs: readonly string[];\n  readonly specIgnore: readonly string[];\n  readonly codeIgnore: readonly string[];\n  readonly extraSpecGlobs: readonly string[];\n  readonly extraSpecIgnore: readonly string[];\n  readonly ignoreMarkers: readonly string[];\n  readonly markers: readonly string[];\n  readonly idPattern: string;\n  readonly crossRefPatterns: readonly string[];\n  readonly format: 'text' | 'json';\n  readonly schemaDir: string;\n  readonly schemaEnabled: boolean;\n  readonly allowWarnings: boolean;\n  readonly specOnly: boolean;\n  readonly fix: boolean;\n}\n\nexport const DEFAULT_CHECK_CONFIG: CheckConfig = {\n  specGlobs: [\n    '.awa/specs/ARCHITECTURE.md',\n    '.awa/specs/FEAT-*.md',\n    '.awa/specs/REQ-*.md',\n    '.awa/specs/DESIGN-*.md',\n    '.awa/specs/EXAMPLE-*.md',\n    '.awa/specs/API-*.tsp',\n    '.awa/tasks/TASK-*.md',\n    '.awa/plans/PLAN-*.md',\n    '.awa/align/ALIGN-*.md',\n  ],\n  codeGlobs: [\n    '**/*.{ts,js,tsx,jsx,mts,mjs,cjs,py,go,rs,java,kt,kts,cs,c,h,cpp,cc,cxx,hpp,hxx,swift,rb,php,scala,ex,exs,dart,lua,zig}',\n  ],\n  specIgnore: [],\n  codeIgnore: [\n    'node_modules/**',\n    'dist/**',\n    'vendor/**',\n    'target/**',\n    'build/**',\n    'out/**',\n    '.awa/**',\n  ],\n  extraSpecGlobs: ['.awa/**/*'],\n  extraSpecIgnore: ['.awa/.agent/**'],\n  ignoreMarkers: [],\n  markers: ['@awa-impl', '@awa-test', '@awa-component'],\n  idPattern: '([A-Z][A-Z0-9]*-\\\\d+(?:\\\\.\\\\d+)?(?:_AC-\\\\d+)?|[A-Z][A-Z0-9]*_P-\\\\d+)',\n  crossRefPatterns: ['IMPLEMENTS:', 'VALIDATES:'],\n  format: 'text',\n  schemaDir: '.awa/.agent/schemas',\n  schemaEnabled: true,\n  allowWarnings: false,\n  specOnly: false,\n  fix: true,\n};\n\nexport type FindingSeverity = 'error' | 'warning';\n\nexport type FindingCode =\n  | 'orphaned-marker'\n  | 'uncovered-ac'\n  | 'uncovered-component'\n  | 'uncovered-property'\n  | 'unimplemented-ac'\n  | 'unlinked-ac'\n  | 'impl-not-in-implements'\n  | 'implements-not-in-impl'\n  | 'broken-cross-ref'\n  | 'invalid-id-format'\n  | 'marker-trailing-text'\n  | 'orphaned-spec'\n  | 'schema-missing-section'\n  | 'schema-wrong-level'\n  | 'schema-missing-content'\n  | 'schema-table-columns'\n  | 'schema-prohibited'\n  | 'schema-no-rule'\n  | 'schema-line-limit';\n\nexport interface Finding {\n  readonly severity: FindingSeverity;\n  readonly code: FindingCode;\n  readonly message: string;\n  readonly filePath?: string;\n  readonly line?: number;\n  readonly id?: string;\n  /** Path to the .schema.yaml file that defines the violated rule. */\n  readonly ruleSource?: string;\n  /** Concise representation of the violated rule. */\n  readonly rule?: string;\n}\n\nexport type MarkerType = 'impl' | 'test' | 'component';\n\nexport interface CodeMarker {\n  readonly type: MarkerType;\n  readonly id: string;\n  readonly filePath: string;\n  readonly line: number;\n}\n\nexport interface MarkerScanResult {\n  readonly markers: readonly CodeMarker[];\n  readonly findings: readonly Finding[];\n}\n\nexport interface CrossReference {\n  readonly type: 'implements' | 'validates';\n  readonly ids: readonly string[];\n  readonly filePath: string;\n  readonly line: number;\n}\n\nexport interface SpecFile {\n  readonly filePath: string;\n  readonly code: string;\n  readonly requirementIds: readonly string[];\n  readonly acIds: readonly string[];\n  readonly propertyIds: readonly string[];\n  readonly componentNames: readonly string[];\n  readonly crossRefs: readonly CrossReference[];\n  /** Maps IDs parsed from this file to their line number. Populated by spec-parser. */\n  readonly idLocations?: ReadonlyMap<string, { filePath: string; line: number }>;\n  /** Maps component names to their IMPLEMENTS AC IDs. Populated for DESIGN files. */\n  readonly componentImplements?: ReadonlyMap<string, readonly string[]>;\n  /** Raw file content, cached by spec-parser to avoid re-reads in downstream phases. */\n  readonly content?: string;\n}\n\nexport interface SpecParseResult {\n  readonly requirementIds: Set<string>;\n  readonly acIds: Set<string>;\n  readonly propertyIds: Set<string>;\n  readonly componentNames: Set<string>;\n  readonly allIds: Set<string>;\n  readonly specFiles: readonly SpecFile[];\n  /** Maps spec IDs (requirements, ACs, properties, components) to their source location. */\n  readonly idLocations: ReadonlyMap<string, { filePath: string; line: number }>;\n}\n\nexport interface CheckResult {\n  readonly findings: readonly Finding[];\n}\n\nexport interface RawCheckOptions {\n  readonly specIgnore?: string[];\n  readonly codeIgnore?: string[];\n  readonly format?: string;\n  readonly json?: boolean;\n  readonly summary?: boolean;\n  readonly config?: string;\n  readonly allowWarnings?: boolean;\n  readonly specOnly?: boolean;\n  readonly fix?: boolean;\n}\n","// @awa-component: TRC-SharedScanner\n// @awa-impl: TRC-1_AC-1\n\nimport type { FileConfig } from '../../types/index.js';\nimport { scanMarkers } from '../check/marker-scanner.js';\nimport { parseSpecs } from '../check/spec-parser.js';\nimport type { CheckConfig, MarkerScanResult, SpecParseResult } from '../check/types.js';\nimport { DEFAULT_CHECK_CONFIG } from '../check/types.js';\nimport { configLoader } from '../config.js';\n\n/** Results from scanning markers and specs in parallel. */\nexport interface ScanResults {\n  readonly markers: MarkerScanResult;\n  readonly specs: SpecParseResult;\n  readonly config: CheckConfig;\n}\n\n/**\n * Build a CheckConfig from file config + optional overrides.\n * Shared by trace, coverage, impact, and graph commands.\n */\nexport function buildScanConfig(\n  fileConfig: FileConfig | null,\n  overrides?: Partial<CheckConfig>,\n): CheckConfig {\n  const section = fileConfig?.check;\n\n  return {\n    specGlobs: toStringArray(section?.['spec-globs']) ?? [...DEFAULT_CHECK_CONFIG.specGlobs],\n    codeGlobs: toStringArray(section?.['code-globs']) ?? [...DEFAULT_CHECK_CONFIG.codeGlobs],\n    specIgnore: toStringArray(section?.['spec-ignore']) ?? [...DEFAULT_CHECK_CONFIG.specIgnore],\n    codeIgnore: toStringArray(section?.['code-ignore']) ?? [...DEFAULT_CHECK_CONFIG.codeIgnore],\n    extraSpecGlobs: toStringArray(section?.['extra-spec-globs']) ?? [\n      ...DEFAULT_CHECK_CONFIG.extraSpecGlobs,\n    ],\n    extraSpecIgnore: toStringArray(section?.['extra-spec-ignore']) ?? [\n      ...DEFAULT_CHECK_CONFIG.extraSpecIgnore,\n    ],\n    ignoreMarkers: toStringArray(section?.['ignore-markers']) ?? [\n      ...DEFAULT_CHECK_CONFIG.ignoreMarkers,\n    ],\n    markers: toStringArray(section?.markers) ?? [...DEFAULT_CHECK_CONFIG.markers],\n    idPattern:\n      typeof section?.['id-pattern'] === 'string'\n        ? section['id-pattern']\n        : DEFAULT_CHECK_CONFIG.idPattern,\n    crossRefPatterns: toStringArray(section?.['cross-ref-patterns']) ?? [\n      ...DEFAULT_CHECK_CONFIG.crossRefPatterns,\n    ],\n    format: DEFAULT_CHECK_CONFIG.format,\n    schemaDir: DEFAULT_CHECK_CONFIG.schemaDir,\n    schemaEnabled: false,\n    allowWarnings: true,\n    specOnly: false,\n    fix: true,\n    ...overrides,\n  };\n}\n\n/**\n * Load config, scan markers and parse specs in parallel.\n * Shared by trace, coverage, impact, and graph commands.\n */\nexport async function scan(configPath?: string): Promise<ScanResults> {\n  const fileConfig = await configLoader.load(configPath ?? null);\n  const config = buildScanConfig(fileConfig);\n\n  const [markers, specs] = await Promise.all([scanMarkers(config), parseSpecs(config)]);\n\n  return { markers, specs, config };\n}\n\nfunction toStringArray(value: unknown): string[] | null {\n  if (Array.isArray(value) && value.every((v) => typeof v === 'string')) {\n    return value as string[];\n  }\n  return 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package/dist/index.js

@@ -10,7 +10,7 @@ import {
   renumberCommand,
   scan,
   scanMarkers
-} from "./chunk-FGJMXOYA.js";
+} from "./chunk-2VUVSW6T.js";
 import {
   ConfigError,
   DiffError,
@@ -36,7 +36,7 @@ import { Command, Option } from "commander";
 // src/_generated/package_info.ts
 var PACKAGE_INFO = {
   "name": "@ncoderz/awa",
-  "version": "1.8.2",
+  "version": "1.8.4",
   "author": "Richard Sewell <richard.sewell@ncoderz.com>",
   "license": "BSD-3-Clause",
   "description": "awa is an Agent Workflow for AIs. It is also a CLI tool to powerfully manage agent workflow files using templates."
@@ -1820,11 +1820,19 @@ function buildCheckConfig(fileConfig, cliOptions) {
   const allowWarnings = cliOptions.allowWarnings === true ? true : typeof section?.["allow-warnings"] === "boolean" ? section["allow-warnings"] : DEFAULT_CHECK_CONFIG.allowWarnings;
   const specOnly = cliOptions.specOnly === true ? true : typeof section?.["spec-only"] === "boolean" ? section["spec-only"] : DEFAULT_CHECK_CONFIG.specOnly;
   const fix = cliOptions.fix === false ? false : DEFAULT_CHECK_CONFIG.fix;
+  const extraSpecGlobs = toStringArray(section?.["extra-spec-globs"]) ?? [
+    ...DEFAULT_CHECK_CONFIG.extraSpecGlobs
+  ];
+  const extraSpecIgnore = toStringArray(section?.["extra-spec-ignore"]) ?? [
+    ...DEFAULT_CHECK_CONFIG.extraSpecIgnore
+  ];
   return {
     specGlobs,
     codeGlobs,
     specIgnore,
     codeIgnore,
+    extraSpecGlobs,
+    extraSpecIgnore,
     ignoreMarkers,
     markers,
     idPattern,
@@ -3548,18 +3556,18 @@ async function executeRenames(renames, sourceCode, targetCode, dryRun) {
   }
   return renames;
 }
-async function findStaleRefs(sourceCode, specFiles) {
+async function findStaleRefs(sourceCode, filePaths) {
   const stale = [];
   const pattern = new RegExp(`\\b${sourceCode}-\\d`, "g");
-  for (const sf of specFiles) {
+  for (const filePath of filePaths) {
     let content;
     try {
-      content = await readFile8(sf.filePath, "utf-8");
+      content = await readFile8(filePath, "utf-8");
     } catch {
       continue;
     }
     if (pattern.test(content)) {
-      stale.push(sf.filePath);
+      stale.push(filePath);
     }
     pattern.lastIndex = 0;
   }
@@ -3716,7 +3724,7 @@ function findHighestPropertyNumber(designFiles) {
 async function mergeCommand(options) {
   try {
     validateMerge(options.sourceCode, options.targetCode);
-    const { markers, specs } = await scan(options.config);
+    const { markers, specs, config } = await scan(options.config);
     const dryRun = options.dryRun === true;
     if (!hasAnySpecFile(specs.specFiles, options.targetCode)) {
       throw new MergeError(
@@ -3732,7 +3740,7 @@ async function mergeCommand(options) {
     let affectedFiles = [];
     let totalReplacements = 0;
     if (!recodeNoChange) {
-      const result2 = await propagate(map, specs, markers, dryRun);
+      const result2 = await propagate(map, specs, markers, config, dryRun);
       affectedFiles = result2.affectedFiles;
       totalReplacements = result2.totalReplacements;
     }
@@ -3744,10 +3752,13 @@ async function mergeCommand(options) {
     );
     const movedSourcePaths = new Set(moves.map((m) => m.sourceFile));
     const propagatedPaths = new Set(affectedFiles.map((af) => af.filePath));
-    const nonSourceFiles = specs.specFiles.filter(
-      (sf) => !movedSourcePaths.has(sf.filePath) && !propagatedPaths.has(sf.filePath)
+    const specFilePaths = specs.specFiles.map((sf) => sf.filePath);
+    const combinedIgnore = [...config.specIgnore, ...config.extraSpecIgnore];
+    const extraFiles = await collectFiles(config.extraSpecGlobs, combinedIgnore);
+    const allFiles = [.../* @__PURE__ */ new Set([...specFilePaths, ...extraFiles])].filter(
+      (p) => !movedSourcePaths.has(p) && !propagatedPaths.has(p)
     );
-    const staleRefs = await findStaleRefs(options.sourceCode, nonSourceFiles);
+    const staleRefs = await findStaleRefs(options.sourceCode, allFiles);
     const noChange = recodeNoChange && moves.length === 0;
     const result = {
       sourceCode: options.sourceCode,
@@ -3764,7 +3775,7 @@ async function mergeCommand(options) {
       return 2;
     }
     if (options.renumber && !dryRun && !noChange) {
-      const { renumberCommand: renumberCommand2 } = await import("./renumber-OJS767K3.js");
+      const { renumberCommand: renumberCommand2 } = await import("./renumber-TGDI47IS.js");
       await renumberCommand2({
         code: options.targetCode,
         dryRun: false,
@@ -3872,7 +3883,7 @@ function formatJson3(result) {
 // src/commands/recode.ts
 async function recodeCommand(options) {
   try {
-    const { markers, specs } = await scan(options.config);
+    const { markers, specs, config } = await scan(options.config);
     const dryRun = options.dryRun === true;
     const { map, noChange: recodeNoChange } = buildRecodeMap(
       options.sourceCode,
@@ -3882,7 +3893,7 @@ async function recodeCommand(options) {
     let affectedFiles = [];
     let totalReplacements = 0;
     if (!recodeNoChange) {
-      const result2 = await propagate(map, specs, markers, dryRun);
+      const result2 = await propagate(map, specs, markers, config, dryRun);
       affectedFiles = result2.affectedFiles;
       totalReplacements = result2.totalReplacements;
     }
@@ -3895,11 +3906,15 @@ async function recodeCommand(options) {
       );
     }
     await executeRenames(renames, options.sourceCode, options.targetCode, dryRun);
+    const renamedPaths = new Set(renames.map((r) => r.oldPath));
     const propagatedPaths = new Set(affectedFiles.map((af) => af.filePath));
-    const nonSourceFiles = specs.specFiles.filter(
-      (sf) => !renames.some((r) => r.oldPath === sf.filePath) && !propagatedPaths.has(sf.filePath)
+    const specFilePaths = specs.specFiles.map((sf) => sf.filePath);
+    const combinedIgnore = [...config.specIgnore, ...config.extraSpecIgnore];
+    const extraFiles = await collectFiles(config.extraSpecGlobs, combinedIgnore);
+    const allFiles = [.../* @__PURE__ */ new Set([...specFilePaths, ...extraFiles])].filter(
+      (p) => !renamedPaths.has(p) && !propagatedPaths.has(p)
     );
-    const staleRefs = await findStaleRefs(options.sourceCode, nonSourceFiles);
+    const staleRefs = await findStaleRefs(options.sourceCode, allFiles);
     const noChange = recodeNoChange && renames.length === 0;
     const result = {
       sourceCode: options.sourceCode,