@naveenadi/mnemonic 0.1.0

package/dist/store/documents.js

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+import { createHash } from 'node:crypto';
+/** Generate 6-char docid from content hash */
+export function docid(content) {
+    return createHash('sha256').update(content).digest('hex').slice(0, 6);
+}
+/** Generate full content hash */
+export function contentHash(content) {
+    return createHash('sha256').update(content).digest('hex');
+}
+/** Extract title from content (first heading or filename) */
+export function extractTitle(content, fallback) {
+    const headingMatch = content.match(/^#\s+(.+)$/m);
+    if (headingMatch)
+        return headingMatch[1].trim();
+    return fallback.replace(/\.md$/i, '').replace(/[-_]/g, ' ');
+}
+/** Parse frontmatter from markdown content */
+export function parseFrontmatter(content) {
+    const fmMatch = content.match(/^---\n([\s\S]*?)\n---\n([\s\S]*)$/);
+    if (!fmMatch)
+        return { frontmatter: null, body: content };
+    try {
+        const { parse } = require('yaml');
+        const fm = parse(fmMatch[1]);
+        return { frontmatter: fm, body: fmMatch[2] };
+    }
+    catch {
+        return { frontmatter: null, body: content };
+    }
+}
+/** Extract tags from frontmatter and inline #tags */
+export function extractTags(frontmatter, content) {
+    const tags = new Set();
+    // From frontmatter
+    if (frontmatter?.tags) {
+        if (Array.isArray(frontmatter.tags)) {
+            frontmatter.tags.forEach((t) => tags.add(String(t)));
+        }
+        else if (typeof frontmatter.tags === 'string') {
+            tags.add(frontmatter.tags);
+        }
+    }
+    // Inline #tags (not in code blocks)
+    const codeBlock = /```[\s\S]*?```/g;
+    const cleaned = content.replace(codeBlock, '');
+    const tagPattern = /(?:^|\s)#([a-zA-Z][a-zA-Z0-9_-]*)/g;
+    let match;
+    while ((match = tagPattern.exec(cleaned)) !== null) {
+        tags.add(match[1]);
+    }
+    return [...tags].sort();
+}
+export class DocumentStore {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    /** Add or update a document */
+    upsert(collection, relPath, fullPath, content) {
+        const hash = contentHash(content);
+        const id = docid(content);
+        const title = extractTitle(content, relPath);
+        const { frontmatter } = parseFrontmatter(content);
+        const tags = extractTags(frontmatter, content);
+        const fmJson = frontmatter ? JSON.stringify(frontmatter) : null;
+        const tagsJson = JSON.stringify(tags);
+        const existing = this.db.db
+            .prepare('SELECT checksum FROM documents WHERE docid = ?')
+            .get(id);
+        if (existing && existing.checksum === hash) {
+            return { docid: id, isNew: false, needsEmbed: false };
+        }
+        if (existing) {
+            // Update existing
+            this.db.db
+                .prepare(`UPDATE documents SET content = ?, checksum = ?, size = ?, title = ?,
+           frontmatter = ?, tags = ?, indexed_at = datetime('now') WHERE docid = ?`)
+                .run(content, hash, content.length, title, fmJson, tagsJson, id);
+        }
+        else {
+            // Insert new
+            this.db.db
+                .prepare(`INSERT INTO documents (docid, collection, path, full_path, title, content, checksum, size, frontmatter, tags)
+           VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`)
+                .run(id, collection, relPath, fullPath, title, content, hash, content.length, fmJson, tagsJson);
+        }
+        // Upsert tags
+        if (existing) {
+            this.db.db.prepare('DELETE FROM tags WHERE docid = ? AND source = ?').run(id, 'frontmatter');
+        }
+        for (const tag of tags) {
+            this.db.db
+                .prepare('INSERT OR IGNORE INTO tags (docid, tag, source) VALUES (?, ?, ?)')
+                .run(id, tag, 'frontmatter');
+        }
+        // Extract and store links
+        this.storeLinks(id, relPath, content);
+        return { docid: id, isNew: !existing, needsEmbed: true };
+    }
+    /** Extract wikilinks and markdown links from content */
+    storeLinks(docid, relPath, content) {
+        // Clear existing links for this doc
+        this.db.db.prepare('DELETE FROM links WHERE source_docid = ?').run(docid);
+        const links = [];
+        // Wikilinks: [[target]] or [[target|display]]
+        const wikilinkPattern = /\[\[([^\]|]+)(?:\|[^\]]+)?\]\]/g;
+        let match;
+        while ((match = wikilinkPattern.exec(content)) !== null) {
+            links.push({ target: match[1].trim(), type: 'wikilink' });
+        }
+        // Markdown links: [text](target) (only local .md links)
+        const mdLinkPattern = /\[[^\]]*\]\(([^)]+\.md[^)]*)\)/g;
+        while ((match = mdLinkPattern.exec(content)) !== null) {
+            links.push({ target: match[1], type: 'markdown' });
+        }
+        const stmt = this.db.db.prepare('INSERT INTO links (source_docid, source_path, target_docid, target_path, link_type) VALUES (?, ?, ?, ?, ?)');
+        for (const link of links) {
+            // Try to resolve target docid
+            const targetDoc = this.db.db
+                .prepare('SELECT docid FROM documents WHERE path LIKE ? OR path LIKE ?')
+                .get(`%${link.target}%`, `%/link.target.md`);
+            stmt.run(docid, relPath, targetDoc?.docid ?? null, link.target, link.type);
+        }
+    }
+    /** Remove a document and its related data */
+    remove(docid) {
+        this.db.db.prepare('DELETE FROM tags WHERE docid = ?').run(docid);
+        this.db.db.prepare('DELETE FROM links WHERE source_docid = ?').run(docid);
+        this.db.db.prepare('DELETE FROM chunks WHERE docid = ?').run(docid);
+        this.db.db.prepare('DELETE FROM documents WHERE docid = ?').run(docid);
+    }
+    /** Remove all documents in a collection */
+    removeCollection(name) {
+        const docs = this.db.db
+            .prepare('SELECT docid FROM documents WHERE collection = ?')
+            .all(name);
+        for (const d of docs) {
+            this.remove(d.docid);
+        }
+        this.db.db.prepare('DELETE FROM collections WHERE name = ?').run(name);
+    }
+    /** Get a document by path or docid */
+    get(identifier) {
+        const isDocid = identifier.startsWith('#') || /^[a-f0-9]{6}$/i.test(identifier);
+        const cleanId = identifier.replace(/^#/, '');
+        let doc;
+        if (isDocid) {
+            doc = this.db.db
+                .prepare('SELECT * FROM documents WHERE docid = ?')
+                .get(cleanId);
+        }
+        else {
+            doc = this.db.db
+                .prepare('SELECT * FROM documents WHERE path LIKE ? OR full_path LIKE ?')
+                .get(`%${identifier}%`, `%${identifier}%`);
+        }
+        if (!doc) {
+            // Find similar files
+            const similar = this.db.db
+                .prepare("SELECT path FROM documents WHERE path LIKE ? LIMIT 5")
+                .all(`%${identifier.slice(0, 3)}%`);
+            return {
+                error: `Document not found: ${identifier}`,
+                similarFiles: similar.map((s) => s.path),
+            };
+        }
+        const tags = doc.tags ? JSON.parse(doc.tags) : [];
+        const frontmatter = doc.frontmatter ? JSON.parse(doc.frontmatter) : undefined;
+        return {
+            docid: doc.docid,
+            path: doc.path,
+            fullPath: doc.full_path,
+            collection: doc.collection,
+            title: doc.title,
+            tags,
+            frontmatter,
+            body: doc.content,
+            totalLines: doc.content.split('\n').length,
+        };
+    }
+    /** Get document body with line range */
+    getBody(identifier, options) {
+        const doc = this.get(identifier);
+        if ('error' in doc)
+            return doc;
+        const lines = doc.body.split('\n');
+        const start = (options?.fromLine ?? 1) - 1;
+        const end = options?.maxLines ? start + options.maxLines : lines.length;
+        const slice = lines.slice(start, end).join('\n');
+        return { content: slice, totalLines: lines.length };
+    }
+    /** Add context entry */
+    addContext(collection, path, context) {
+        this.db.db
+            .prepare('INSERT OR REPLACE INTO contexts (collection, path, context) VALUES (?, ?, ?)')
+            .run(collection, path, context);
+    }
+    /** List all contexts */
+    listContexts() {
+        return this.db.db
+            .prepare('SELECT collection, path, context FROM contexts ORDER BY path')
+            .all();
+    }
+    /** Remove a context */
+    removeContext(collection, path) {
+        this.db.db
+            .prepare('DELETE FROM contexts WHERE collection = ? AND path = ?')
+            .run(collection, path);
+    }
+    /** Get context chain for a document (hierarchical) */
+    getContextChain(collection, relPath) {
+        const contexts = [];
+        // Match contexts by path prefix, from most specific to least
+        const all = this.db.db
+            .prepare(`SELECT path, context FROM contexts
+         WHERE (collection = ? OR collection IS NULL)
+         ORDER BY length(path) DESC`)
+            .all(collection);
+        for (const ctx of all) {
+            if (relPath.startsWith(ctx.path) || ctx.path === '/') {
+                contexts.push(ctx.context);
+            }
+        }
+        return contexts;
+    }
+    /** Add a manual tag */
+    addTag(docid, tag) {
+        this.db.db
+            .prepare('INSERT OR IGNORE INTO tags (docid, tag, source) VALUES (?, ?, ?)')
+            .run(docid, tag, 'manual');
+    }
+    /** Remove a manual tag */
+    removeTag(docid, tag) {
+        this.db.db
+            .prepare('DELETE FROM tags WHERE docid = ? AND tag = ? AND source = ?')
+            .run(docid, tag, 'manual');
+    }
+    /** Get all tags */
+    getAllTags() {
+        return this.db.db
+            .prepare('SELECT tag, COUNT(*) as count FROM tags GROUP BY tag ORDER BY count DESC')
+            .all();
+    }
+    /** Get backlinks to a document */
+    getBacklinks(docid) {
+        return this.db.db
+            .prepare(`SELECT source_docid as sourceDocid, source_path as sourcePath,
+                target_docid as targetDocid, target_path as targetPath,
+                link_type as linkType
+         FROM links WHERE target_docid = ? OR target_path LIKE ?`)
+            .all(docid, `%${docid}%`);
+    }
+    /** Get outgoing links from a document */
+    getLinks(docid) {
+        return this.db.db
+            .prepare(`SELECT source_docid as sourceDocid, source_path as sourcePath,
+                target_docid as targetDocid, target_path as targetPath,
+                link_type as linkType
+         FROM links WHERE source_docid = ?`)
+            .all(docid);
+    }
+    /** Find orphan documents (no incoming or outgoing links) */
+    getOrphans() {
+        return this.db.db
+            .prepare(`SELECT docid, path FROM documents WHERE docid NOT IN (
+          SELECT DISTINCT source_docid FROM links
+          UNION
+          SELECT DISTINCT target_docid FROM links WHERE target_docid IS NOT NULL
+        ) ORDER BY path`)
+            .all();
+    }
+}
+//# sourceMappingURL=documents.js.map

package/dist/store/documents.js.map

@@ -0,0 +1 @@
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package/dist/types.d.ts

@@ -0,0 +1,193 @@
+/** Document metadata as stored in SQLite */
+export interface DocumentRecord {
+    id: number;
+    docid: string;
+    collection: string;
+    path: string;
+    fullPath: string;
+    title: string;
+    content: string;
+    checksum: string;
+    size: number;
+    createdAt: string;
+    indexedAt: string;
+    frontmatter: string | null;
+    tags: string | null;
+}
+/** A chunk of a document, stored in the vectors index */
+export interface ChunkRecord {
+    hash: string;
+    seq: number;
+    pos: number;
+    content: string;
+    heading: string;
+}
+/** Search result from any backend */
+export interface SearchResult {
+    docid: string;
+    collection: string;
+    path: string;
+    fullPath: string;
+    title: string;
+    score: number;
+    snippet: string;
+    context: string[];
+    tags: string[];
+    line: number;
+    heading: string;
+    modifiedAt: string;
+    explain?: ScoreExplain;
+}
+export interface ScoreExplain {
+    ftsScores: number[];
+    vectorScores: number[];
+    rerankScore?: number;
+    rrf: {
+        rank: number;
+        weight: number;
+        baseScore: number;
+        topRankBonus: number;
+        totalScore: number;
+        contributions: Array<{
+            source: 'fts' | 'vector' | 'hyde';
+            queryType: 'original' | 'expanded' | 'hyde';
+            query: string;
+            rank: number;
+            weight: number;
+            backendScore: number;
+            rrfContribution: number;
+        }>;
+    };
+    decay?: number;
+    linkBoost?: number;
+}
+/** Typed sub-query for structured search */
+export interface ExpandedQuery {
+    type: 'lex' | 'vec' | 'hyde';
+    query: string;
+}
+/** Collection configuration */
+export interface CollectionConfig {
+    path: string;
+    name: string;
+    pattern?: string;
+    ignore?: string[];
+    includeByDefault?: boolean;
+    updateCommand?: string;
+}
+/** Store configuration */
+export interface StoreOptions {
+    dbPath: string;
+    config?: {
+        collections?: Record<string, CollectionConfig>;
+    };
+    configPath?: string;
+}
+/** Search options */
+export interface SearchOptions {
+    query?: string;
+    queries?: ExpandedQuery[];
+    intent?: string;
+    collection?: string | string[];
+    limit?: number;
+    minScore?: number;
+    candidateLimit?: number;
+    rerank?: boolean;
+    expand?: boolean;
+    hyde?: boolean;
+    decay?: boolean;
+    decayHalfLifeDays?: number;
+    boostLinks?: boolean;
+    explain?: boolean;
+    fullContent?: boolean;
+    format?: 'cli' | 'json' | 'md' | 'files';
+}
+/** Ingestion result */
+export interface UpdateResult {
+    collections: string[];
+    indexed: number;
+    updated: number;
+    unchanged: number;
+    removed: number;
+    needsEmbedding: number;
+}
+/** Embedding progress */
+export interface EmbedProgress {
+    current: number;
+    total: number;
+    collection: string;
+}
+/** Embedding result */
+export interface EmbedResult {
+    embedded: number;
+    skipped: number;
+    failed: number;
+}
+/** Store status */
+export interface IndexStatus {
+    collections: CollectionInfo[];
+    documentCount: number;
+    chunkCount: number;
+    vectorCount: number;
+    linkCount: number;
+    tagCount: number;
+    dbSize: number;
+    lastIndexed: string | null;
+    mcpPid?: number;
+}
+export interface CollectionInfo {
+    name: string;
+    path: string;
+    globPattern: string;
+    docCount: number;
+    activeCount: number;
+    lastModified: string;
+    includeByDefault: boolean;
+    contextCount: number;
+}
+/** Context entry (hierarchical metadata) */
+export interface ContextEntry {
+    collection: string;
+    path: string;
+    context: string;
+}
+/** Link graph entry */
+export interface LinkEntry {
+    sourceDocid: string;
+    sourcePath: string;
+    targetDocid: string | null;
+    targetPath: string;
+    linkType: 'wikilink' | 'markdown' | 'autolink';
+}
+/** Document retrieval */
+export interface DocumentResult {
+    docid: string;
+    path: string;
+    fullPath: string;
+    collection: string;
+    title: string;
+    tags: string[];
+    frontmatter?: Record<string, unknown>;
+    body: string;
+    totalLines: number;
+}
+export interface DocumentNotFound {
+    error: string;
+    similarFiles: string[];
+}
+/** LLM backend interface */
+export interface LLMBackend {
+    /** Generate embeddings for text (returns normalized vectors) */
+    embed(texts: string[]): Promise<number[][]>;
+    /** Rerank documents by relevance to query */
+    rerank(query: string, documents: string[]): Promise<number[]>;
+    /** Generate query expansions */
+    expandQuery(query: string, intent?: string): Promise<string[]>;
+    /** Generate HyDE document */
+    generateHyde(query: string, intent?: string): Promise<string>;
+    /** Get embedding dimension */
+    embeddingDim(): number;
+    /** Close/release resources */
+    close(): Promise<void>;
+}
+//# sourceMappingURL=types.d.ts.map

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package/dist/types.js

@@ -0,0 +1,3 @@
+// ─── Core Types ───────────────────────────────────────────────────────
+export {};
+//# sourceMappingURL=types.js.map

package/dist/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../src/types.ts"],"names":[],"mappings":"AAAA,yEAAyE"}

package/package.json

@@ -0,0 +1,58 @@
+{
+  "name": "@naveenadi/mnemonic",
+  "version": "0.1.0",
+  "description": "On-device hybrid search for markdown knowledge bases. BM25 + vector + LLM reranking with link graphs, time decay, and HyDE. Designed for pi coding agent.",
+  "type": "module",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "bin": {
+    "mne": "bin/mne"
+  },
+  "files": [
+    "bin/",
+    "dist/",
+    "SKILL.md",
+    "pi-extension/"
+  ],
+  "scripts": {
+    "build": "tsc -p tsconfig.build.json",
+    "dev": "tsx src/cli/index.ts",
+    "test": "vitest run",
+    "test:watch": "vitest",
+    "prepublishOnly": "npm run build"
+  },
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.29.0",
+    "better-sqlite3": "^12.10.0",
+    "fast-glob": "^3.3.3",
+    "node-llama-cpp": "^3.18.1",
+    "picomatch": "^4.0.4",
+    "sqlite-vec": "^0.1.9",
+    "yaml": "^2.9.0",
+    "zod": "^4.2.1"
+  },
+  "optionalDependencies": {
+    "sqlite-vec-darwin-arm64": "^0.1.9"
+  },
+  "peerDependencies": {
+    "typescript": "^5.9.0"
+  },
+  "engines": {
+    "node": ">=22.0.0"
+  },
+  "keywords": [
+    "search",
+    "markdown",
+    "knowledge-base",
+    "vector-search",
+    "bm25",
+    "rag",
+    "mcp",
+    "local-ai",
+    "semantic-search"
+  ],
+  "license": "MIT",
+  "devDependencies": {
+    "@types/node": "^22.19.21"
+  }
+}