@natlibfi/melinda-rest-api-commons 2.2.0-alpha.19 → 2.2.0-alpha.21

package/dist/mongo.js

@@ -438,13 +438,26 @@ async function _default(MONGO_URI, collection) {
     }); // njsscan-ignore: node_nosqli_injection
 
     if (result) {
-      return {
-        contentType: result.contentType,
-        readStream: gridFSBucket.openDownloadStreamByName(clean)
-      };
+      const {
+        operationSettings
+      } = result;
+
+      if (operationSettings.prio === false && operationSettings.noStream === false) {
+        return {
+          contentType: result.contentType,
+          readStream: gridFSBucket.openDownloadStreamByName(clean)
+        };
+      }
+
+      logger.debug(`OperationSetting for ${correlationId}: ${JSON.stringify(operationSettings)}`);
+      throw new _melindaCommons.Error(_httpStatus.default.BAD_REQUEST, {
+        message: `Content is only available for streamBulk jobs. ${correlationId} is not a streamBulk job.`
+      });
     }
 
-    throw new _melindaCommons.Error(_httpStatus.default.NOT_FOUND);
+    throw new _melindaCommons.Error(_httpStatus.default.NOT_FOUND, {
+      message: `Job ${correlationId} not found.`
+    });
   }
 
   async function removeContent(params) {
@@ -570,7 +583,7 @@ async function _default(MONGO_URI, collection) {
     errorMessage = undefined,
     errorStatus = undefined
   }) {
-    const errorString = errorMessage || errorStatus ? `, Error message: '${errorMessage || ''}', Error status: '${errorStatus || ''}'` : '';
+    const errorString = errorMessage || errorStatus ? `, Error message: '${JSON.stringify(errorMessage) || ''}', Error status: '${errorStatus || ''}'` : '';
     logger.info(`Setting queue-item state ${state} for ${correlationId}${errorString} to ${collection}`);
     const stateInQueueItemStates = Object.values(_constants.QUEUE_ITEM_STATE).indexOf(state) > -1;
     const stateInQueueItemStatesValidator = Object.values(_constants.QUEUE_ITEM_STATE.VALIDATOR).indexOf(state) > -1;

package/dist/mongo.js.map

@@ -1 +1 @@
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@licstart  The following is the entire license notice for the JavaScript code in this file.\n*\n* Shared modules for microservices of Melinda rest api batch import system\n*\n* Copyright (C) 2020-2021 University Of Helsinki (The National Library Of Finland)\n*\n* This file is part of melinda-rest-api-commons\n*\n* melinda-rest-api-commons program is free software: you can redistribute it and/or modify\n* it under the terms of the GNU Affero General Public License as\n* published by the Free Software Foundation, either version 3 of the\n* License, or (at your option) any later version.\n*\n* melinda-rest-api-commons is distributed in the hope that it will be useful,\n* but WITHOUT ANY WARRANTY; without even the implied warranty of\n* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\n* GNU Affero General Public License for more details.\n*\n* You should have received a copy of the GNU Affero General Public License\n* along with this program.  If not, see <http://www.gnu.org/licenses/>.\n*\n* @licend  The above is the entire license notice\n* for the JavaScript code in this file.\n*\n*/\n\nimport {MongoClient, GridFSBucket, MongoDriverError} from 'mongodb';\nimport {createLogger} from '@natlibfi/melinda-backend-commons';\nimport {Error as ApiError} from '@natlibfi/melinda-commons';\nimport {QUEUE_ITEM_STATE, IMPORT_JOB_STATE, OPERATIONS} from './constants';\nimport {logError} from './utils.js';\nimport moment from 'moment';\nimport httpStatus from 'http-status';\nimport sanitize from 'mongo-sanitize';\n//import isDeepStrictEqual from 'util';\n\n/* QueueItem:\n{\n  \"correlationId\":\"FOO\",\n  \"cataloger\":\"xxx0000\",\n  \"oCatalogerIn\":\"xxx0000\"\n  \"operation\":\"UPDATE\",\n  \"operations\":[\"UPDATE\", \"CREATE\"]\n  \"contentType\":\"application/json\",\n  \"recordLoadParams\": {\n    \"pActiveLibrary\": \"XXX00\",\n    \"pInputFile\": \"filename.seq\",\n    \"pRejectFile\": \"filename.rej\",\n    \"pLogFile\": \"filename.syslog\",\n    \"pOldNew\": \"NEW\"\n  },\n  \"queueItemState\":\"PENDING_QUEUING\",\n  \"importJobState\": {\n    \"CREATE\": \"EMPTY\",\n    \"UPDATE\": \"EMPTY\"\n  },\n  blobSize: 1,\n  records: [],\n  errorMessage: '',\n  errorStatus: '',\n  \"creationTime\":\"2020-01-01T00:00:00.000Z\",\n  \"modificationTime\":\"2020-01-01T00:00:01.000Z\",\n}\n*/\n\nexport default async function (MONGO_URI, collection) {\n  const logger = createLogger();\n\n  // Connect to mongo (MONGO)\n  const client = await MongoClient.connect(MONGO_URI, {useNewUrlParser: true, useUnifiedTopology: true});\n  const db = client.db('rest-api');\n  const gridFSBucket = new GridFSBucket(db, {bucketName: collection});\n\n  return {createPrio, createBulk, checkAndSetState, checkAndSetImportJobState, query, queryById, remove, readContent, removeContent, getOne, getStream, setState, setImportJobState, pushIds, pushMessages, setOperation, setOperations, addBlobSize, setBlobSize};\n\n  async function createPrio({correlationId, cataloger, oCatalogerIn, operation, operationSettings}) {\n    const time = moment().toDate();\n    const newQueueItem = {\n      correlationId,\n      cataloger,\n      operation,\n      operations: [operation],\n      oCatalogerIn,\n      operationSettings: {\n        prio: true,\n        ...operationSettings\n      },\n      queueItemState: QUEUE_ITEM_STATE.VALIDATOR.PENDING_VALIDATION,\n      blobSize: 1,\n      importJobState: {\n        CREATE: IMPORT_JOB_STATE.EMPTY,\n        UPDATE: IMPORT_JOB_STATE.EMPTY\n      },\n      records: [],\n      errorMessage: '',\n      errorStatus: '',\n      creationTime: time,\n      modificationTime: time\n    };\n    try {\n      const result = await db.collection(collection).insertOne(newQueueItem);\n      if (result.acknowledged) {\n        logger.info(`New PRIO queue item for ${operation} ${correlationId} has been made in ${collection}`);\n        return;\n      }\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n    } catch (error) {\n      logError(error);\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n    }\n  }\n\n  async function createBulk({correlationId, cataloger, oCatalogerIn, operation, contentType, recordLoadParams, stream, operationSettings}) {\n    const time = moment().toDate();\n    const newQueueItem = {\n      correlationId,\n      cataloger,\n      oCatalogerIn,\n      operation,\n      operations: [operation],\n      operationSettings: {\n        prio: false,\n        ...operationSettings\n      },\n      contentType,\n      recordLoadParams,\n      queueItemState: stream ? QUEUE_ITEM_STATE.VALIDATOR.UPLOADING : QUEUE_ITEM_STATE.VALIDATOR.WAITING_FOR_RECORDS,\n      blobSize: 0,\n      importJobState: {\n        CREATE: IMPORT_JOB_STATE.EMPTY,\n        UPDATE: IMPORT_JOB_STATE.EMPTY\n      },\n      records: [],\n      errorMessage: '',\n      errorStatus: '',\n      creationTime: time,\n      modificationTime: time\n    };\n\n    // eslint-disable-next-line functional/no-conditional-statement\n    if (stream) {\n      try {\n        // No await here, promises later\n        db.collection(collection).insertOne(newQueueItem);\n        logger.info(`New BULK queue item for ${operation} ${correlationId} has been made in ${collection}!`);\n        return new Promise((resolve, reject) => {\n          const outputStream = gridFSBucket.openUploadStream(correlationId);\n\n          stream\n            .on('error', reject)\n            .on('data', chunk => outputStream.write(chunk))\n            .on('end', () => outputStream.end(undefined, undefined, () => {\n              resolve(correlationId);\n            }));\n        });\n      } catch (error) {\n        logError(error);\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n      }\n    }\n\n    logger.debug(`No stream`);\n    // eslint-disable-next-line functional/no-conditional-statement\n    if (!stream) {\n      try {\n        const result = await db.collection(collection).insertOne(newQueueItem);\n        if (result.acknowledged) {\n          logger.info(`New noStream BULK queue item for ${operation} ${correlationId} has been made in ${collection}`);\n          return {correlationId, queueItemState: QUEUE_ITEM_STATE.VALIDATOR.WAITING_FOR_RECORDS};\n        }\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n      } catch (error) {\n        logError(error);\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n      }\n    }\n  }\n\n  // Check state that the queueItem has not waited too long and set state\n  async function checkAndSetState({correlationId, state, errorMessage = undefined, errorStatus = undefined}) {\n    // checkTimeOut returns true, if queueItem is fresher than 1 minute and it's state is not ABORT/ERROR\n    // otherwise it sets queueItem to state ABORT (408, 'Timeout')\n    const timeOut = await checkTimeOut({correlationId});\n    if (timeOut) {\n      return setState({correlationId, state, errorMessage, errorStatus});\n    }\n    return false;\n  }\n\n  // Check state that the queueItem has not waited too long and set state\n  async function checkAndSetImportJobState({correlationId, operation, importJobState, errorMessage = '', errorStatus = ''}) {\n    // checkTimeOut returns true, if queueItem is fresher than 1 minute and it's state is not ABORT/ERROR\n    // otherwise it sets queueItem to state ABORT (408, 'Timeout')\n    logger.debug(`${correlationId}, ${importJobState}, ${operation}`);\n    const timeOut = await checkTimeOut({correlationId, operation, importJobState});\n    if (timeOut) {\n      return setImportJobState({correlationId, operation, importJobState, errorMessage, errorStatus});\n    }\n    return false;\n  }\n\n  async function query(params, showParams = {}) {\n    const {showOperations = 0, showOperationSettings = 0, showRecordLoadParams = 0, showImportJobState = 0} = showParams;\n    const {limit = 1000, skip = 0, ...rest} = params;\n    const result = await db.collection(collection).find(rest, {projection: {\n      _id: 0,\n      operations: showOperations,\n      operationSettings: showOperationSettings,\n      recordLoadParams: showRecordLoadParams,\n      importJobState: showImportJobState\n    }})\n      .limit(parseInt(limit, 10))\n      .skip(parseInt(skip, 10))\n      .toArray();\n    logger.debug(`Query result: ${result.length > 0 ? 'Found!' : 'Not found!'}`);\n    return result;\n  }\n\n  async function queryById({correlationId, checkModTime = false}) {\n    const result = await db.collection(collection).findOne({correlationId});\n    if (checkModTime) {\n      const timeOut = await checkTimeOut({correlationId});\n      if (timeOut) {\n        return queryById({correlationId});\n      }\n      return result;\n    }\n\n    return result;\n  }\n\n  // Check that if the item has waited too long\n  // If the last modification time for the queueItem is older than 1 minute\n  // set state to ABORT and return false, otherwise return true\n  // If the state is already ABORT or ERROR return false\n\n  async function checkTimeOut({correlationId}) {\n    const {modificationTime, queueitemState: oldState, importJobState} = await db.collection(collection).findOne({correlationId});\n\n    // should we check for DONE too?\n    if ([QUEUE_ITEM_STATE.ABORT, QUEUE_ITEM_STATE.ERROR, QUEUE_ITEM_STATE.DONE].includes(oldState)) {\n      logger.silly(`${correlationId} has already state: ${oldState}`);\n      return false;\n    }\n\n    const timeoutTime = moment(modificationTime).add(1, 'm');\n    logger.silly(`timeOut @ ${timeoutTime}`);\n\n    if (timeoutTime.isBefore()) {\n      const finalImportJobStates = [IMPORT_JOB_STATE.ABORT, IMPORT_JOB_STATE.DONE, IMPORT_JOB_STATE.EMPTY, IMPORT_JOB_STATE.ERROR];\n      if (!finalImportJobStates.includes(importJobState.CREATE)) { // eslint-disable-line\n        await setImportJobState({correlationId, operation: 'CREATE', importJobState: IMPORT_JOB_STATE.ABORT});\n      }\n\n      if (!finalImportJobStates.includes(importJobState.UPDATE)) { // eslint-disable-line\n        await setImportJobState({correlationId, operation: 'UPDATE', importJobState: IMPORT_JOB_STATE.ABORT});\n      }\n\n      await setState({correlationId, state: QUEUE_ITEM_STATE.ABORT, errorStatus: httpStatus.REQUEST_TIMEOUT, errorMessage: `Timeout in ${oldState}`});\n\n      return false;\n    }\n\n    return true;\n  }\n\n  async function remove(params) {\n    logger.silly(`${JSON.stringify(params)}`);\n    logger.info(`Removing from Mongo (${collection}) id: ${params.correlationId}`);\n    const clean = sanitize(params.correlationId);\n    logger.silly(`mongo/remove: clean: ${JSON.stringify(clean)}`);\n\n    try {\n      //const metadataResult = await getFileMetadata({filename: clean});\n      //logger.debug(`mongo/remove: metadataResult: ${JSON.stringify(metadataResult)}`);\n      const noContent = await removeContent(params);\n      if (noContent) {\n        await db.collection(collection).deleteOne({correlationId: clean});\n        return true;\n      }\n    } catch (err) {\n      if (err instanceof MongoDriverError) {\n        if (err.message.indexOf('File not found for id') !== -1) {\n          logger.silly(`mongo/remove: File not found, removing queueItem ${JSON.stringify(clean)} from ${collection}`);\n          await db.collection(collection).deleteOne({correlationId: clean});\n          return true;\n        }\n        logger.error(err.message);\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR, err.message);\n      }\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR, err.message);\n    }\n  }\n\n  async function readContent(correlationId) {\n    logger.info(`Reading content from mongo for id: ${correlationId} in ${collection}`);\n    const clean = sanitize(correlationId);\n    const result = await db.collection(collection).findOne({correlationId: clean}); // njsscan-ignore: node_nosqli_injection\n\n    if (result) {\n      return {\n        contentType: result.contentType,\n        readStream: gridFSBucket.openDownloadStreamByName(clean)\n      };\n    }\n\n    throw new ApiError(httpStatus.NOT_FOUND);\n  }\n\n  async function removeContent(params) {\n    logger.info(`Removing content from mongo for id: ${params.correlationId} in ${collection}`);\n    const clean = sanitize(params.correlationId);\n\n    const result = await db.collection(collection).findOne({correlationId: clean}); // njsscan-ignore: node_nosqli_injection\n    logger.silly(`mongo/removeContent: result ${JSON.stringify(result)}`);\n\n    if (result) {\n      await gridFSBucket.delete(clean);\n      return true;\n    }\n\n    return true;\n  }\n\n  // eslint-disable-next-line max-statements\n  function getOne({queueItemState, importJobState = undefined}) {\n\n    logger.silly(`queueItemState: ${queueItemState}, importJobState: ${JSON.stringify(importJobState)}`);\n    const cleanQueueItemState = queueItemState ? {queueItemState: sanitize(queueItemState)} : undefined;\n\n    try {\n\n      // Just queueItemState\n      if (queueItemState && importJobState === undefined) {\n        logger.silly(`Checking DB ${collection} for just ${JSON.stringify(cleanQueueItemState.queueItemState)}`);\n        return db.collection(collection).findOne({...cleanQueueItemState});\n      }\n\n      // importJobState\n      if (importJobState && queueItemState === undefined) {\n        logger.silly(`Checking DB ${collection} for ${JSON.stringify(importJobState)}`);\n        return db.collection(collection).findOne({...importJobState});\n      }\n\n      // importJobState and queueItemState\n      if (importJobState && queueItemState) {\n        logger.silly(`Checking DB ${collection} for ${queueItemState} and ${JSON.stringify(importJobState)}`);\n        return db.collection(collection).findOne({...cleanQueueItemState, ...importJobState});\n      }\n\n      logger.debug(`getOne not working!`);\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR, 'Missing parameters, cannot get queueItem');\n\n    } catch (error) {\n      logError(error);\n    }\n  }\n\n  function getStream(correlationId) {\n    logger.info(`Forming stream from mongo for ${correlationId} in ${collection}`);\n    const clean = sanitize(correlationId);\n    try {\n      // Return content stream\n      return gridFSBucket.openDownloadStreamByName(clean);\n    } catch (error) {\n      logError(error);\n    }\n  }\n\n  async function pushIds({correlationId, handledIds, rejectedIds}) {\n    logger.verbose(`Push ids (${handledIds.length}) and rejectedIds (${rejectedIds.length}) ${correlationId} to ${collection}`);\n    logger.debug(`ids (${handledIds.length}): ${JSON.stringify(handledIds)}, rejectedIds ${rejectedIds.length}: ${JSON.stringify(rejectedIds)}`);\n    const clean = sanitize(correlationId);\n    await db.collection(collection).updateOne({\n      correlationId: clean\n    }, {\n      $set: {\n        modificationTime: moment().toDate()\n      },\n      $push: {\n        handledIds: {$each: handledIds},\n        rejectedIds: {$each: rejectedIds}\n      }\n    });\n  }\n\n  async function pushMessages({correlationId, messages, messageField = 'messages'}) {\n    logger.verbose(`Push messages (${messages.length}) to ${messageField} ${correlationId} to ${collection}`);\n    logger.silly(`Messages (${messages.length}): ${JSON.stringify(messages)}}`);\n    const clean = sanitize(correlationId);\n    const cleanMessageField = sanitize(messageField);\n    await db.collection(collection).updateOne({\n      correlationId: clean\n    }, {\n      $set: {\n        modificationTime: moment().toDate()\n      },\n      $push: {\n        [cleanMessageField]: {$each: messages}\n      }\n    });\n  }\n\n  function setState({correlationId, state, errorMessage = undefined, errorStatus = undefined}) {\n    const errorString = errorMessage || errorStatus ? `, Error message: '${errorMessage || ''}', Error status: '${errorStatus || ''}'` : '';\n    logger.info(`Setting queue-item state ${state} for ${correlationId}${errorString} to ${collection}`);\n\n    const stateInQueueItemStates = Object.values(QUEUE_ITEM_STATE).indexOf(state) > -1;\n    const stateInQueueItemStatesValidator = Object.values(QUEUE_ITEM_STATE.VALIDATOR).indexOf(state) > -1;\n    const stateInQueueItemStatesImporter = Object.values(QUEUE_ITEM_STATE.IMPORTER).indexOf(state) > -1;\n    if (!stateInQueueItemStates && !stateInQueueItemStatesValidator && !stateInQueueItemStatesImporter) {\n      throw new ApiError(httpStatus.BAD_REQUEST, 'Trying to set invalid state');\n    }\n\n    const clean = sanitize(correlationId);\n    const updateValues = {\n      queueItemState: state,\n      modificationTime: moment().toDate(),\n      errorMessage,\n      errorStatus\n    };\n\n    // Do not update value that are undefined\n    // eslint-disable-next-line functional/immutable-data\n    Object.keys(updateValues).forEach(key => updateValues[key] === undefined && delete updateValues[key]);\n\n    return db.collection(collection)\n      .findOneAndUpdate(\n        {correlationId: clean},\n        {$set: updateValues},\n        {projection: {_id: 0}, returnNewDocument: true}\n      );\n  }\n\n  function setImportJobState({correlationId, operation, importJobState}) {\n\n    // should this also get importJobState as previously created object? {}\n    logger.info(`Setting queue-item importJobState: {${operation}: ${importJobState}} for ${correlationId}`);\n    const cleanCorrelationId = sanitize(correlationId);\n    const cleanImportJobState = sanitize(importJobState);\n\n    if (!(operation in OPERATIONS)) {\n      throw new ApiError('400', 'Invalid operation for import job state');\n    }\n\n    if (!(cleanImportJobState in IMPORT_JOB_STATE)) {\n      throw new ApiError('400', 'Invalid import job state');\n    }\n\n    const newJobState = operation === OPERATIONS.CREATE ? {'importJobState.CREATE': cleanImportJobState} : {'importJobState.UPDATE': cleanImportJobState};\n    return db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        ...newJobState,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n  }\n\n  async function setOperation({correlationId, operation}) {\n    const newOperation = operation;\n    const {operation: oldOperation} = await db.collection(collection).findOne({correlationId});\n    logger.info(`Setting queue-item operation from ${oldOperation} to ${newOperation} for ${correlationId} to ${collection}`);\n    const cleanCorrelationId = sanitize(correlationId);\n    const cleanNewOperation = sanitize(newOperation);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        operation: cleanNewOperation,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    return result.ok;\n    // logger.debug(JSON.stringify(result));\n  }\n\n  async function setOperations({correlationId, addOperation, removeOperation = undefined}) {\n    const cleanCorrelationId = sanitize(correlationId);\n\n    const queueItem = await db.collection(collection).findOne({correlationId: cleanCorrelationId});\n    logger.silly(`We found a queueItem: ${JSON.stringify(queueItem)}`);\n\n    const oldOperations = queueItem.operations;\n\n    logger.info(`Setting queue-item operations from ${JSON.stringify(oldOperations)} by adding ${addOperation} and removing ${removeOperation} for ${correlationId} to ${collection}`);\n\n    const operationsAfterRemove = oldOperations.filter(operation => operation !== removeOperation);\n    const operationsAfterRemoveAndAdd = operationsAfterRemove.includes(addOperation) ? operationsAfterRemove : [...operationsAfterRemove, addOperation];\n\n    logger.silly(`operationsAfterRemove: ${operationsAfterRemove}`);\n    logger.silly(`operationAfterRemoveAndAdd: ${operationsAfterRemoveAndAdd}`);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        operations: operationsAfterRemoveAndAdd,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    return result.ok;\n    // logger.debug(JSON.stringify(result));\n  }\n\n  async function addBlobSize({correlationId}) {\n    const cleanCorrelationId = sanitize(correlationId);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId,\n      queueItemState: QUEUE_ITEM_STATE.VALIDATOR.WAITING_FOR_RECORDS\n    }, {\n      $inc: {\n        blobSize: 1\n      },\n      $set: {\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    logger.verbose(`AddBlobSizeResult in mongo: ${JSON.stringify(result)}`);\n    return result;\n  }\n\n  async function setBlobSize({correlationId, blobSize}) {\n    const cleanCorrelationId = sanitize(correlationId);\n    const cleanBlobSize = sanitize(blobSize);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        blobSize: cleanBlobSize,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    logger.verbose(`SetBlobSizeResult in mongo: ${JSON.stringify(result)}`);\n    return result;\n  }\n\n}\n"],"file":"mongo.js"}
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@licstart  The following is the entire license notice for the JavaScript code in this file.\n*\n* Shared modules for microservices of Melinda rest api batch import system\n*\n* Copyright (C) 2020-2021 University Of Helsinki (The National Library Of Finland)\n*\n* This file is part of melinda-rest-api-commons\n*\n* melinda-rest-api-commons program is free software: you can redistribute it and/or modify\n* it under the terms of the GNU Affero General Public License as\n* published by the Free Software Foundation, either version 3 of the\n* License, or (at your option) any later version.\n*\n* melinda-rest-api-commons is distributed in the hope that it will be useful,\n* but WITHOUT ANY WARRANTY; without even the implied warranty of\n* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\n* GNU Affero General Public License for more details.\n*\n* You should have received a copy of the GNU Affero General Public License\n* along with this program.  If not, see <http://www.gnu.org/licenses/>.\n*\n* @licend  The above is the entire license notice\n* for the JavaScript code in this file.\n*\n*/\n\nimport {MongoClient, GridFSBucket, MongoDriverError} from 'mongodb';\nimport {createLogger} from '@natlibfi/melinda-backend-commons';\nimport {Error as ApiError} from '@natlibfi/melinda-commons';\nimport {QUEUE_ITEM_STATE, IMPORT_JOB_STATE, OPERATIONS} from './constants';\nimport {logError} from './utils.js';\nimport moment from 'moment';\nimport httpStatus from 'http-status';\nimport sanitize from 'mongo-sanitize';\n//import isDeepStrictEqual from 'util';\n\n/* QueueItem:\n{\n  \"correlationId\":\"FOO\",\n  \"cataloger\":\"xxx0000\",\n  \"oCatalogerIn\":\"xxx0000\"\n  \"operation\":\"UPDATE\",\n  \"operations\":[\"UPDATE\", \"CREATE\"]\n  \"contentType\":\"application/json\",\n  \"recordLoadParams\": {\n    \"pActiveLibrary\": \"XXX00\",\n    \"pInputFile\": \"filename.seq\",\n    \"pRejectFile\": \"filename.rej\",\n    \"pLogFile\": \"filename.syslog\",\n    \"pOldNew\": \"NEW\"\n  },\n  \"queueItemState\":\"PENDING_QUEUING\",\n  \"importJobState\": {\n    \"CREATE\": \"EMPTY\",\n    \"UPDATE\": \"EMPTY\"\n  },\n  blobSize: 1,\n  records: [],\n  errorMessage: '',\n  errorStatus: '',\n  \"creationTime\":\"2020-01-01T00:00:00.000Z\",\n  \"modificationTime\":\"2020-01-01T00:00:01.000Z\",\n}\n*/\n\nexport default async function (MONGO_URI, collection) {\n  const logger = createLogger();\n\n  // Connect to mongo (MONGO)\n  const client = await MongoClient.connect(MONGO_URI, {useNewUrlParser: true, useUnifiedTopology: true});\n  const db = client.db('rest-api');\n  const gridFSBucket = new GridFSBucket(db, {bucketName: collection});\n\n  return {createPrio, createBulk, checkAndSetState, checkAndSetImportJobState, query, queryById, remove, readContent, removeContent, getOne, getStream, setState, setImportJobState, pushIds, pushMessages, setOperation, setOperations, addBlobSize, setBlobSize};\n\n  async function createPrio({correlationId, cataloger, oCatalogerIn, operation, operationSettings}) {\n    const time = moment().toDate();\n    const newQueueItem = {\n      correlationId,\n      cataloger,\n      operation,\n      operations: [operation],\n      oCatalogerIn,\n      operationSettings: {\n        prio: true,\n        ...operationSettings\n      },\n      queueItemState: QUEUE_ITEM_STATE.VALIDATOR.PENDING_VALIDATION,\n      blobSize: 1,\n      importJobState: {\n        CREATE: IMPORT_JOB_STATE.EMPTY,\n        UPDATE: IMPORT_JOB_STATE.EMPTY\n      },\n      records: [],\n      errorMessage: '',\n      errorStatus: '',\n      creationTime: time,\n      modificationTime: time\n    };\n    try {\n      const result = await db.collection(collection).insertOne(newQueueItem);\n      if (result.acknowledged) {\n        logger.info(`New PRIO queue item for ${operation} ${correlationId} has been made in ${collection}`);\n        return;\n      }\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n    } catch (error) {\n      logError(error);\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n    }\n  }\n\n  async function createBulk({correlationId, cataloger, oCatalogerIn, operation, contentType, recordLoadParams, stream, operationSettings}) {\n    const time = moment().toDate();\n    const newQueueItem = {\n      correlationId,\n      cataloger,\n      oCatalogerIn,\n      operation,\n      operations: [operation],\n      operationSettings: {\n        prio: false,\n        ...operationSettings\n      },\n      contentType,\n      recordLoadParams,\n      queueItemState: stream ? QUEUE_ITEM_STATE.VALIDATOR.UPLOADING : QUEUE_ITEM_STATE.VALIDATOR.WAITING_FOR_RECORDS,\n      blobSize: 0,\n      importJobState: {\n        CREATE: IMPORT_JOB_STATE.EMPTY,\n        UPDATE: IMPORT_JOB_STATE.EMPTY\n      },\n      records: [],\n      errorMessage: '',\n      errorStatus: '',\n      creationTime: time,\n      modificationTime: time\n    };\n\n    // eslint-disable-next-line functional/no-conditional-statement\n    if (stream) {\n      try {\n        // No await here, promises later\n        db.collection(collection).insertOne(newQueueItem);\n        logger.info(`New BULK queue item for ${operation} ${correlationId} has been made in ${collection}!`);\n        return new Promise((resolve, reject) => {\n          const outputStream = gridFSBucket.openUploadStream(correlationId);\n\n          stream\n            .on('error', reject)\n            .on('data', chunk => outputStream.write(chunk))\n            .on('end', () => outputStream.end(undefined, undefined, () => {\n              resolve(correlationId);\n            }));\n        });\n      } catch (error) {\n        logError(error);\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n      }\n    }\n\n    logger.debug(`No stream`);\n    // eslint-disable-next-line functional/no-conditional-statement\n    if (!stream) {\n      try {\n        const result = await db.collection(collection).insertOne(newQueueItem);\n        if (result.acknowledged) {\n          logger.info(`New noStream BULK queue item for ${operation} ${correlationId} has been made in ${collection}`);\n          return {correlationId, queueItemState: QUEUE_ITEM_STATE.VALIDATOR.WAITING_FOR_RECORDS};\n        }\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n      } catch (error) {\n        logError(error);\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR);\n      }\n    }\n  }\n\n  // Check state that the queueItem has not waited too long and set state\n  async function checkAndSetState({correlationId, state, errorMessage = undefined, errorStatus = undefined}) {\n    // checkTimeOut returns true, if queueItem is fresher than 1 minute and it's state is not ABORT/ERROR\n    // otherwise it sets queueItem to state ABORT (408, 'Timeout')\n    const timeOut = await checkTimeOut({correlationId});\n    if (timeOut) {\n      return setState({correlationId, state, errorMessage, errorStatus});\n    }\n    return false;\n  }\n\n  // Check state that the queueItem has not waited too long and set state\n  async function checkAndSetImportJobState({correlationId, operation, importJobState, errorMessage = '', errorStatus = ''}) {\n    // checkTimeOut returns true, if queueItem is fresher than 1 minute and it's state is not ABORT/ERROR\n    // otherwise it sets queueItem to state ABORT (408, 'Timeout')\n    logger.debug(`${correlationId}, ${importJobState}, ${operation}`);\n    const timeOut = await checkTimeOut({correlationId, operation, importJobState});\n    if (timeOut) {\n      return setImportJobState({correlationId, operation, importJobState, errorMessage, errorStatus});\n    }\n    return false;\n  }\n\n  async function query(params, showParams = {}) {\n    const {showOperations = 0, showOperationSettings = 0, showRecordLoadParams = 0, showImportJobState = 0} = showParams;\n    const {limit = 1000, skip = 0, ...rest} = params;\n    const result = await db.collection(collection).find(rest, {projection: {\n      _id: 0,\n      operations: showOperations,\n      operationSettings: showOperationSettings,\n      recordLoadParams: showRecordLoadParams,\n      importJobState: showImportJobState\n    }})\n      .limit(parseInt(limit, 10))\n      .skip(parseInt(skip, 10))\n      .toArray();\n    logger.debug(`Query result: ${result.length > 0 ? 'Found!' : 'Not found!'}`);\n    return result;\n  }\n\n  async function queryById({correlationId, checkModTime = false}) {\n    const result = await db.collection(collection).findOne({correlationId});\n    if (checkModTime) {\n      const timeOut = await checkTimeOut({correlationId});\n      if (timeOut) {\n        return queryById({correlationId});\n      }\n      return result;\n    }\n\n    return result;\n  }\n\n  // Check that if the item has waited too long\n  // If the last modification time for the queueItem is older than 1 minute\n  // set state to ABORT and return false, otherwise return true\n  // If the state is already ABORT or ERROR return false\n\n  async function checkTimeOut({correlationId}) {\n    const {modificationTime, queueitemState: oldState, importJobState} = await db.collection(collection).findOne({correlationId});\n\n    // should we check for DONE too?\n    if ([QUEUE_ITEM_STATE.ABORT, QUEUE_ITEM_STATE.ERROR, QUEUE_ITEM_STATE.DONE].includes(oldState)) {\n      logger.silly(`${correlationId} has already state: ${oldState}`);\n      return false;\n    }\n\n    const timeoutTime = moment(modificationTime).add(1, 'm');\n    logger.silly(`timeOut @ ${timeoutTime}`);\n\n    if (timeoutTime.isBefore()) {\n      const finalImportJobStates = [IMPORT_JOB_STATE.ABORT, IMPORT_JOB_STATE.DONE, IMPORT_JOB_STATE.EMPTY, IMPORT_JOB_STATE.ERROR];\n      if (!finalImportJobStates.includes(importJobState.CREATE)) { // eslint-disable-line\n        await setImportJobState({correlationId, operation: 'CREATE', importJobState: IMPORT_JOB_STATE.ABORT});\n      }\n\n      if (!finalImportJobStates.includes(importJobState.UPDATE)) { // eslint-disable-line\n        await setImportJobState({correlationId, operation: 'UPDATE', importJobState: IMPORT_JOB_STATE.ABORT});\n      }\n\n      await setState({correlationId, state: QUEUE_ITEM_STATE.ABORT, errorStatus: httpStatus.REQUEST_TIMEOUT, errorMessage: `Timeout in ${oldState}`});\n\n      return false;\n    }\n\n    return true;\n  }\n\n  async function remove(params) {\n    logger.silly(`${JSON.stringify(params)}`);\n    logger.info(`Removing from Mongo (${collection}) id: ${params.correlationId}`);\n    const clean = sanitize(params.correlationId);\n    logger.silly(`mongo/remove: clean: ${JSON.stringify(clean)}`);\n\n    try {\n      //const metadataResult = await getFileMetadata({filename: clean});\n      //logger.debug(`mongo/remove: metadataResult: ${JSON.stringify(metadataResult)}`);\n      const noContent = await removeContent(params);\n      if (noContent) {\n        await db.collection(collection).deleteOne({correlationId: clean});\n        return true;\n      }\n    } catch (err) {\n      if (err instanceof MongoDriverError) {\n        if (err.message.indexOf('File not found for id') !== -1) {\n          logger.silly(`mongo/remove: File not found, removing queueItem ${JSON.stringify(clean)} from ${collection}`);\n          await db.collection(collection).deleteOne({correlationId: clean});\n          return true;\n        }\n        logger.error(err.message);\n        throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR, err.message);\n      }\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR, err.message);\n    }\n  }\n\n  async function readContent(correlationId) {\n    logger.info(`Reading content from mongo for id: ${correlationId} in ${collection}`);\n    const clean = sanitize(correlationId);\n    const result = await db.collection(collection).findOne({correlationId: clean}); // njsscan-ignore: node_nosqli_injection\n\n    if (result) {\n      const {operationSettings} = result;\n      if (operationSettings.prio === false && operationSettings.noStream === false) {\n        return {\n          contentType: result.contentType,\n          readStream: gridFSBucket.openDownloadStreamByName(clean)\n        };\n      }\n      logger.debug(`OperationSetting for ${correlationId}: ${JSON.stringify(operationSettings)}`);\n      throw new ApiError(httpStatus.BAD_REQUEST, {message: `Content is only available for streamBulk jobs. ${correlationId} is not a streamBulk job.`});\n    }\n\n    throw new ApiError(httpStatus.NOT_FOUND, {message: `Job ${correlationId} not found.`});\n  }\n\n  async function removeContent(params) {\n    logger.info(`Removing content from mongo for id: ${params.correlationId} in ${collection}`);\n    const clean = sanitize(params.correlationId);\n\n    const result = await db.collection(collection).findOne({correlationId: clean}); // njsscan-ignore: node_nosqli_injection\n    logger.silly(`mongo/removeContent: result ${JSON.stringify(result)}`);\n\n    if (result) {\n      await gridFSBucket.delete(clean);\n      return true;\n    }\n\n    return true;\n  }\n\n  // eslint-disable-next-line max-statements\n  function getOne({queueItemState, importJobState = undefined}) {\n\n    logger.silly(`queueItemState: ${queueItemState}, importJobState: ${JSON.stringify(importJobState)}`);\n    const cleanQueueItemState = queueItemState ? {queueItemState: sanitize(queueItemState)} : undefined;\n\n    try {\n\n      // Just queueItemState\n      if (queueItemState && importJobState === undefined) {\n        logger.silly(`Checking DB ${collection} for just ${JSON.stringify(cleanQueueItemState.queueItemState)}`);\n        return db.collection(collection).findOne({...cleanQueueItemState});\n      }\n\n      // importJobState\n      if (importJobState && queueItemState === undefined) {\n        logger.silly(`Checking DB ${collection} for ${JSON.stringify(importJobState)}`);\n        return db.collection(collection).findOne({...importJobState});\n      }\n\n      // importJobState and queueItemState\n      if (importJobState && queueItemState) {\n        logger.silly(`Checking DB ${collection} for ${queueItemState} and ${JSON.stringify(importJobState)}`);\n        return db.collection(collection).findOne({...cleanQueueItemState, ...importJobState});\n      }\n\n      logger.debug(`getOne not working!`);\n      throw new ApiError(httpStatus.INTERNAL_SERVER_ERROR, 'Missing parameters, cannot get queueItem');\n\n    } catch (error) {\n      logError(error);\n    }\n  }\n\n  function getStream(correlationId) {\n    logger.info(`Forming stream from mongo for ${correlationId} in ${collection}`);\n    const clean = sanitize(correlationId);\n    try {\n      // Return content stream\n      return gridFSBucket.openDownloadStreamByName(clean);\n    } catch (error) {\n      logError(error);\n    }\n  }\n\n  async function pushIds({correlationId, handledIds, rejectedIds}) {\n    logger.verbose(`Push ids (${handledIds.length}) and rejectedIds (${rejectedIds.length}) ${correlationId} to ${collection}`);\n    logger.debug(`ids (${handledIds.length}): ${JSON.stringify(handledIds)}, rejectedIds ${rejectedIds.length}: ${JSON.stringify(rejectedIds)}`);\n    const clean = sanitize(correlationId);\n    await db.collection(collection).updateOne({\n      correlationId: clean\n    }, {\n      $set: {\n        modificationTime: moment().toDate()\n      },\n      $push: {\n        handledIds: {$each: handledIds},\n        rejectedIds: {$each: rejectedIds}\n      }\n    });\n  }\n\n  async function pushMessages({correlationId, messages, messageField = 'messages'}) {\n    logger.verbose(`Push messages (${messages.length}) to ${messageField} ${correlationId} to ${collection}`);\n    logger.silly(`Messages (${messages.length}): ${JSON.stringify(messages)}}`);\n    const clean = sanitize(correlationId);\n    const cleanMessageField = sanitize(messageField);\n    await db.collection(collection).updateOne({\n      correlationId: clean\n    }, {\n      $set: {\n        modificationTime: moment().toDate()\n      },\n      $push: {\n        [cleanMessageField]: {$each: messages}\n      }\n    });\n  }\n\n  function setState({correlationId, state, errorMessage = undefined, errorStatus = undefined}) {\n    const errorString = errorMessage || errorStatus ? `, Error message: '${JSON.stringify(errorMessage) || ''}', Error status: '${errorStatus || ''}'` : '';\n    logger.info(`Setting queue-item state ${state} for ${correlationId}${errorString} to ${collection}`);\n\n    const stateInQueueItemStates = Object.values(QUEUE_ITEM_STATE).indexOf(state) > -1;\n    const stateInQueueItemStatesValidator = Object.values(QUEUE_ITEM_STATE.VALIDATOR).indexOf(state) > -1;\n    const stateInQueueItemStatesImporter = Object.values(QUEUE_ITEM_STATE.IMPORTER).indexOf(state) > -1;\n    if (!stateInQueueItemStates && !stateInQueueItemStatesValidator && !stateInQueueItemStatesImporter) {\n      throw new ApiError(httpStatus.BAD_REQUEST, 'Trying to set invalid state');\n    }\n\n    const clean = sanitize(correlationId);\n    const updateValues = {\n      queueItemState: state,\n      modificationTime: moment().toDate(),\n      errorMessage,\n      errorStatus\n    };\n\n    // Do not update value that are undefined\n    // eslint-disable-next-line functional/immutable-data\n    Object.keys(updateValues).forEach(key => updateValues[key] === undefined && delete updateValues[key]);\n\n    return db.collection(collection)\n      .findOneAndUpdate(\n        {correlationId: clean},\n        {$set: updateValues},\n        {projection: {_id: 0}, returnNewDocument: true}\n      );\n  }\n\n  function setImportJobState({correlationId, operation, importJobState}) {\n\n    // should this also get importJobState as previously created object? {}\n    logger.info(`Setting queue-item importJobState: {${operation}: ${importJobState}} for ${correlationId}`);\n    const cleanCorrelationId = sanitize(correlationId);\n    const cleanImportJobState = sanitize(importJobState);\n\n    if (!(operation in OPERATIONS)) {\n      throw new ApiError('400', 'Invalid operation for import job state');\n    }\n\n    if (!(cleanImportJobState in IMPORT_JOB_STATE)) {\n      throw new ApiError('400', 'Invalid import job state');\n    }\n\n    const newJobState = operation === OPERATIONS.CREATE ? {'importJobState.CREATE': cleanImportJobState} : {'importJobState.UPDATE': cleanImportJobState};\n    return db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        ...newJobState,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n  }\n\n  async function setOperation({correlationId, operation}) {\n    const newOperation = operation;\n    const {operation: oldOperation} = await db.collection(collection).findOne({correlationId});\n    logger.info(`Setting queue-item operation from ${oldOperation} to ${newOperation} for ${correlationId} to ${collection}`);\n    const cleanCorrelationId = sanitize(correlationId);\n    const cleanNewOperation = sanitize(newOperation);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        operation: cleanNewOperation,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    return result.ok;\n    // logger.debug(JSON.stringify(result));\n  }\n\n  async function setOperations({correlationId, addOperation, removeOperation = undefined}) {\n    const cleanCorrelationId = sanitize(correlationId);\n\n    const queueItem = await db.collection(collection).findOne({correlationId: cleanCorrelationId});\n    logger.silly(`We found a queueItem: ${JSON.stringify(queueItem)}`);\n\n    const oldOperations = queueItem.operations;\n\n    logger.info(`Setting queue-item operations from ${JSON.stringify(oldOperations)} by adding ${addOperation} and removing ${removeOperation} for ${correlationId} to ${collection}`);\n\n    const operationsAfterRemove = oldOperations.filter(operation => operation !== removeOperation);\n    const operationsAfterRemoveAndAdd = operationsAfterRemove.includes(addOperation) ? operationsAfterRemove : [...operationsAfterRemove, addOperation];\n\n    logger.silly(`operationsAfterRemove: ${operationsAfterRemove}`);\n    logger.silly(`operationAfterRemoveAndAdd: ${operationsAfterRemoveAndAdd}`);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        operations: operationsAfterRemoveAndAdd,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    return result.ok;\n    // logger.debug(JSON.stringify(result));\n  }\n\n  async function addBlobSize({correlationId}) {\n    const cleanCorrelationId = sanitize(correlationId);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId,\n      queueItemState: QUEUE_ITEM_STATE.VALIDATOR.WAITING_FOR_RECORDS\n    }, {\n      $inc: {\n        blobSize: 1\n      },\n      $set: {\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    logger.verbose(`AddBlobSizeResult in mongo: ${JSON.stringify(result)}`);\n    return result;\n  }\n\n  async function setBlobSize({correlationId, blobSize}) {\n    const cleanCorrelationId = sanitize(correlationId);\n    const cleanBlobSize = sanitize(blobSize);\n\n    const result = await db.collection(collection).findOneAndUpdate({\n      correlationId: cleanCorrelationId\n    }, {\n      $set: {\n        blobSize: cleanBlobSize,\n        modificationTime: moment().toDate()\n      }\n    }, {projection: {_id: 0}, returnNewDocument: true});\n\n    logger.verbose(`SetBlobSizeResult in mongo: ${JSON.stringify(result)}`);\n    return result;\n  }\n\n}\n"],"file":"mongo.js"}

package/package.json

@@ -14,7 +14,7 @@
 		"url": "git@github.com:natlibfi/melinda-rest-api-commons.git"
 	},
 	"license": "AGPL-3.0+",
-	"version": "2.2.0-alpha.19",
+	"version": "2.2.0-alpha.21",
 	"main": "./dist/index.js",
 	"engines": {
 		"node": ">=14"