@nanonets/graft 0.9.1 → 0.10.1

package/dist/graph/queries/kotlin.scm

@@ -0,0 +1,43 @@
+; Classes
+(class_declaration
+  (type_identifier) @name) @definition.class
+
+; Objects
+(object_declaration
+  (type_identifier) @name) @definition.class
+
+; Functions (top-level and member)
+(function_declaration
+  (simple_identifier) @name) @definition.function
+
+; Properties
+(property_declaration
+  (variable_declaration
+    (simple_identifier) @name)) @definition.constant
+
+; Enum entries
+(enum_entry
+  (simple_identifier) @name) @definition.constant
+
+; Type aliases
+(type_alias
+  (type_identifier) @name) @definition.type
+
+; Companion objects (only named ones)
+(companion_object
+  (type_identifier) @name) @definition.class
+
+; Function calls
+(call_expression
+  (simple_identifier) @name) @reference.call
+
+; Method calls via navigation
+(call_expression
+  (navigation_expression
+    (navigation_suffix
+      (simple_identifier) @name))) @reference.call
+
+; Constructor invocations (class references)
+(constructor_invocation
+  (user_type
+    (type_identifier) @name)) @reference.class

package/dist/graph/queries/php.scm

@@ -0,0 +1,40 @@
+(namespace_definition
+  name: (namespace_name) @name) @definition.module
+
+(interface_declaration
+  name: (name) @name) @definition.interface
+
+(trait_declaration
+  name: (name) @name) @definition.interface
+
+(class_declaration
+  name: (name) @name) @definition.class
+
+(class_interface_clause [(name) (qualified_name)] @name) @reference.implementation
+
+(property_declaration
+  (property_element (variable_name (name) @name))) @definition.field
+
+(function_definition
+  name: (name) @name) @definition.function
+
+(method_declaration
+  name: (name) @name) @definition.function
+
+(object_creation_expression
+  [
+    (qualified_name (name) @name)
+    (variable_name (name) @name)
+  ]) @reference.class
+
+(function_call_expression
+  function: [
+    (qualified_name (name) @name)
+    (variable_name (name)) @name
+  ]) @reference.call
+
+(scoped_call_expression
+  name: (name) @name) @reference.call
+
+(member_call_expression
+  name: (name) @name) @reference.call

package/dist/graph/queries/ruby.scm

@@ -0,0 +1,65 @@
+; Method definitions
+
+(
+  (comment)* @doc
+  .
+  [
+    (method
+      name: (_) @name) @definition.method
+    (singleton_method
+      name: (_) @name) @definition.method
+  ]
+  (#strip! @doc "^#\\s*")
+  (#select-adjacent! @doc @definition.method)
+)
+
+(alias
+  name: (_) @name) @definition.method
+
+(setter
+  (identifier) @ignore)
+
+; Class definitions
+
+(
+  (comment)* @doc
+  .
+  [
+    (class
+      name: [
+        (constant) @name
+        (scope_resolution
+          name: (_) @name)
+      ]) @definition.class
+    (singleton_class
+      value: [
+        (constant) @name
+        (scope_resolution
+          name: (_) @name)
+      ]) @definition.class
+  ]
+  (#strip! @doc "^#\\s*")
+  (#select-adjacent! @doc @definition.class)
+)
+
+; Module definitions
+
+(
+  (module
+    name: [
+      (constant) @name
+      (scope_resolution
+        name: (_) @name)
+    ]) @definition.module
+)
+
+; Calls
+; NB: only explicit call nodes — the upstream tags.scm also tags bare
+; [(identifier)(constant)] as @reference.call gated by (#is-not? local), but that
+; predicate needs the paired @local.* captures (from locals.scm, which graft does
+; not load) to mean anything. Without them it's a no-op, so bare *variable reads*
+; that share a name with a same-file/unique method become bogus `calls` edges
+; (resolve.ts can't tell a var read from a zero-arg call). Dropped for precision —
+; consistent with every other breadth-tier query (all use explicit call nodes).
+
+(call method: (identifier) @name) @reference.call

package/dist/graph/queries/rust.scm

@@ -0,0 +1,41 @@
+; Rust tags — standard tree-sitter tags convention (@definition.<kind> + @name + @reference.call).
+; Vendored for graft's generic breadth tier. Predicates like (#strip! ...) are
+; sanitized out at load time by generic.ts.
+
+(function_item (identifier) @name) @definition.function
+
+(function_signature_item (identifier) @name) @definition.function
+
+(struct_item (type_identifier) @name) @definition.struct
+
+(enum_item (type_identifier) @name) @definition.enum
+
+(union_item (type_identifier) @name) @definition.struct
+
+(trait_item (type_identifier) @name) @definition.interface
+
+(type_item (type_identifier) @name) @definition.type
+
+(mod_item (identifier) @name) @definition.module
+
+(macro_definition (identifier) @name) @definition.function
+
+(const_item (identifier) @name) @definition.constant
+
+(static_item (identifier) @name) @definition.constant
+
+; associated functions / methods inside impl blocks are function_item too,
+; already captured above; call sites below:
+
+(call_expression
+  function: [
+    (identifier) @name
+    (field_expression field: (field_identifier) @name)
+    (scoped_identifier name: (identifier) @name)
+  ]) @reference.call
+
+(macro_invocation
+  macro: [
+    (identifier) @name
+    (scoped_identifier name: (identifier) @name)
+  ]) @reference.call

package/dist/graph/queries/scala.scm

@@ -0,0 +1,66 @@
+; Definitions
+
+(package_clause
+  name: (package_identifier) @name) @definition.module
+
+(trait_definition
+  name: (identifier) @name) @definition.interface
+
+(enum_definition
+  name: (identifier) @name) @definition.enum
+
+(simple_enum_case
+  name: (identifier) @name) @definition.class
+
+(full_enum_case
+  name: (identifier) @name) @definition.class
+
+(class_definition
+  name: (identifier) @name) @definition.class
+
+(object_definition
+  name: (identifier) @name) @definition.object
+
+(function_definition
+  name: (identifier) @name) @definition.function
+
+(val_definition
+  pattern: (identifier) @name) @definition.variable
+
+(given_definition
+  name: (identifier) @name) @definition.variable
+
+(var_definition
+  pattern: (identifier) @name) @definition.variable
+
+(val_declaration
+  name: (identifier) @name) @definition.variable
+
+(var_declaration
+  name: (identifier) @name) @definition.variable
+
+(type_definition
+  name: (type_identifier) @name) @definition.type
+
+(class_parameter
+  name: (identifier) @name) @definition.property
+
+; References 
+
+(call_expression
+  (identifier) @name) @reference.call
+
+(instance_expression
+  (type_identifier) @name) @reference.interface
+
+(instance_expression
+  (generic_type
+    (type_identifier) @name)) @reference.interface
+
+(extends_clause
+  (type_identifier) @name) @reference.class
+
+(extends_clause
+  (generic_type
+    (type_identifier) @name)) @reference.class
+

package/dist/graph/queries/solidity.scm

@@ -0,0 +1,43 @@
+;; Method and Function declarations
+(contract_declaration (_
+    (function_definition
+        name: (identifier) @name) @definition.method))
+
+(source_file
+    (function_definition
+        name: (identifier) @name) @definition.function)
+
+;; Contract, struct, enum and interface declarations
+(contract_declaration
+  name: (identifier) @name) @definition.class
+
+(interface_declaration
+  name: (identifier) @name) @definition.interface
+
+(library_declaration
+  name: (identifier) @name) @definition.interface
+
+(struct_declaration name: (identifier) @name) @definition.class
+(enum_declaration name: (identifier) @name) @definition.class
+(event_definition name: (identifier) @name) @definition.class
+
+;; Function calls
+(call_expression (expression (identifier)) @name ) @reference.call
+
+(call_expression
+    (expression (member_expression
+        property: (_) @name ))) @reference.call
+
+;; Log emit
+(emit_statement name: (_) @name) @reference.class
+
+
+;; Inheritance
+
+(inheritance_specifier
+    ancestor: (user_defined_type (_) @name . )) @reference.class
+
+
+;; Imports ( note that unknown is not standardised )
+(import_directive
+  import_name: (_) @name ) @reference.unknown

package/dist/graph/queries/swift.scm

@@ -0,0 +1,51 @@
+(class_declaration
+  name: (type_identifier) @name) @definition.class
+
+(protocol_declaration
+  name: (type_identifier) @name) @definition.interface
+
+(class_declaration
+    (class_body
+        [
+            (function_declaration
+                name: (simple_identifier) @name
+            )
+            (subscript_declaration
+                (parameter (simple_identifier) @name)
+            )
+            (init_declaration "init" @name)
+            (deinit_declaration "deinit" @name)
+        ]
+    )
+) @definition.method
+
+(protocol_declaration
+    (protocol_body
+        [
+            (protocol_function_declaration
+                name: (simple_identifier) @name
+            )
+            (subscript_declaration
+                (parameter (simple_identifier) @name)
+            )
+            (init_declaration "init" @name)
+        ]
+    )
+) @definition.method
+
+(class_declaration
+    (class_body
+        [
+            (property_declaration
+                (pattern (simple_identifier) @name)
+            )
+        ]
+    )
+) @definition.property
+
+(property_declaration
+    (pattern (simple_identifier) @name)
+) @definition.property
+
+(function_declaration
+    name: (simple_identifier) @name) @definition.function

package/dist/graph/resolve.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"resolve.d.ts","sourceRoot":"","sources":["../../src/graph/resolve.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,MAAM,EAAQ,MAAM,EAAY,MAAM,YAAY,CAAC;AACjE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAI5C;;sDAEsD;AACtD,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,WAAW,cAAc;IAC7B;;6FAEyF;IACzF,SAAS,CAAC,EAAE,QAAQ,EAAE,CAAC;CACxB;AAED,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,EAAE,EACf,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,GAAE,cAAmB,GACxB,MAAM,EAAE,CAuFV"}
+{"version":3,"file":"resolve.d.ts","sourceRoot":"","sources":["../../src/graph/resolve.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,MAAM,EAAQ,MAAM,EAAY,MAAM,YAAY,CAAC;AACjE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAI5C;;sDAEsD;AACtD,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,WAAW,cAAc;IAC7B;;6FAEyF;IACzF,SAAS,CAAC,EAAE,QAAQ,EAAE,CAAC;CACxB;AAED,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,EAAE,EACf,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,GAAE,cAAmB,GACxB,MAAM,EAAE,CAmIV"}

package/dist/graph/resolve.js

@@ -2,7 +2,7 @@
  * Resolve {@link RawEdge} intents into concrete {@link EdgeV1} edges by matching
  * names/specifiers against the whole-repo node index.
  *
- * Confidence mirrors the SCIP/Graphify model:
+ * Confidence is a two-tier provenance model:
  *   - `extracted`: the target is certain — a match within the same file, an
  *     import specifier, or a structural containment.
  *   - `inferred`: a bare function target was resolved by a unique name match
@@ -24,6 +24,11 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
     const ownerMethod = new Map();
     // Go package resolution: dir (posix) → its `.go` file node ids, for import mapping.
     const goFilesByDir = new Map();
+    // Java package resolution: a file's package-path suffix (`com/acme/Foo.java`) → its
+    // file node ids. A Java import names a type by its fully-qualified name, which by
+    // language convention mirrors the directory path under whatever source root the
+    // project uses (`src/main/java/`, `src/`, …) — so the suffix is the portable key.
+    const javaFilesBySuffix = new Map();
     const hasGoModules = !!opts.goModules?.length;
     for (const n of nodes) {
         if (n.kind === "file") {
@@ -31,6 +36,14 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
                 const dir = posix.dirname(toPosixPath(n.path));
                 push(goFilesByDir, dir, n.id);
             }
+            if (n.path.endsWith(".java")) {
+                // Index every directory-boundary suffix, since the source root is unknown:
+                // `src/main/java/com/acme/Foo.java` is reachable as `com/acme/Foo.java`,
+                // `acme/Foo.java`, and so on. The import's own FQN picks the right depth.
+                const parts = toPosixPath(n.path).split("/");
+                for (let i = 0; i < parts.length; i++)
+                    push(javaFilesBySuffix, parts.slice(i).join("/"), n.id);
+            }
             continue;
         }
         push(globalName, n.name, n);
@@ -73,7 +86,9 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
         else if (e.relation === "imports" && e.specifier) {
             const target = hasGoModules && e.file.endsWith(".go")
                 ? resolveGoImport(e.specifier, opts.goModules, goFilesByDir)
-                : resolveImport(e.specifier, e.file, byId);
+                : e.file.endsWith(".java")
+                    ? resolveJavaImport(e.specifier, javaFilesBySuffix)
+                    : resolveImport(e.specifier, e.file, byId);
             add(e.source, target, "imports", "extracted");
         }
         else if (e.relation === "extends" || e.relation === "implements") {
@@ -82,31 +97,62 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
             // an unresolved base is usually an external/imported type — keep the name.
             add(e.source, hit?.id ?? e.name, e.relation, hit?.confidence ?? "inferred");
         }
-        else if (e.relation === "references" && e.name && e.specifier) {
-            // A named import gives both halves needed for sound resolution: the module
-            // it came from and the exported name. Resolve inside that file only, so a
-            // same-named symbol elsewhere in the repo cannot become a false edge.
-            const targetFile = resolveImport(e.specifier, e.file, byId);
-            if (!byId.has(targetFile))
-                continue; // external or unresolved module
-            const candidates = perFileName.get(targetFile)?.get(e.name) ?? [];
-            if (candidates.length === 1)
-                add(e.source, candidates[0].id, "references", "extracted");
+        else if (e.relation === "references" && e.name) {
+            if (e.specifier) {
+                // A named import gives both halves needed for sound resolution: the module
+                // it came from and the exported name. Resolve inside that file only, so a
+                // same-named symbol elsewhere in the repo cannot become a false edge.
+                const targetFile = resolveImport(e.specifier, e.file, byId);
+                if (!byId.has(targetFile))
+                    continue; // external or unresolved module
+                const candidates = perFileName.get(targetFile)?.get(e.name) ?? [];
+                if (candidates.length === 1)
+                    add(e.source, candidates[0].id, "references", "extracted");
+            }
+            else if (byId.get(e.source)?.origin === "generic") {
+                // Breadth tier: a bare-name structural reference (extends / implements /
+                // object-creation / module alias) the grammar marked but cannot type. Resolve
+                // to a type-like definition, drop-rather-than-guess, never a self-loop. Gated on
+                // generic origin so depth-tier references (which always carry a specifier) are
+                // provably untouched.
+                const refKinds = ["class", "interface", "struct", "enum", "type", "module"];
+                const hit = resolveName(e.name, e.file, refKinds, perFileName, globalName);
+                if (hit && hit.id !== e.source)
+                    add(e.source, hit.id, "references", hit.confidence);
+            }
         }
         else if (e.relation === "calls") {
             if (e.viaMember) {
                 if (!e.recvType)
                     continue;
-                const hit = resolveTypedMember(e.recvType, e.name, e.file, ownerMethod, classParents);
+                const hit = resolveTypedMember(e.recvType, e.name, e.file, ownerMethod, classParents, e.argCount);
                 if (hit === "ambiguous")
                     continue; // drop — never guess past an ambiguous owner
                 if (hit)
                     add(e.source, hit.id, "calls", hit.confidence);
                 // No owner-qualified match means the call is unresolved. A unique bare
-                // method name is not evidence that this receiver has that method.
+                // method name is not evidence that this receiver has that method — a
+                // name-fallback here was measured to HALVE call-edge precision (73%→37%
+                // vs a compiler-grade oracle) for a 3x count inflation, i.e. noise. See #35.
                 continue;
             }
-            const hit = resolveName(e.name, e.file, ["function"], perFileName, globalName);
+            // Three cases, because "a bare call" means something different per tier:
+            //
+            //  - generic (breadth tier): tags.scm captures ALL calls as bare names, since it
+            //    cannot type a receiver. In method-heavy languages those target methods, so
+            //    widen to methods — ONLY here, leaving depth-tier precision untouched (an
+            //    ambiguous function-vs-method name still drops).
+            //  - Java (depth tier): an implicit-`this` call is spelled as a member call in
+            //    extract.ts, so the only bare call reaching here is `new Foo()`, whose target
+            //    is a TYPE. Against the function index every constructor edge would drop.
+            //  - everything else: functions, exactly as before.
+            const srcOrigin = byId.get(e.source)?.origin;
+            const callKinds = srcOrigin === "generic"
+                ? ["function", "method"]
+                : e.file.endsWith(".java")
+                    ? ["class", "struct", "enum", "interface"]
+                    : ["function"];
+            const hit = resolveName(e.name, e.file, callKinds, perFileName, globalName);
             if (hit)
                 add(e.source, hit.id, "calls", hit.confidence); // drop unresolved calls (too noisy)
         }
@@ -146,15 +192,40 @@ function resolveName(name, file, kinds, perFileName, globalName) {
  *   - `null` — the whole chain (recvType + ancestors, breadth-first, depth ≤ 3,
  *     cycle-guarded) had zero candidates at every level.
  */
-function resolveTypedMember(recvType, name, file, ownerMethod, classParents) {
+/**
+ * Narrow an overload set to the candidates a call of `argCount` arguments could
+ * reach. Only Java emits `argCount`/`arity`, so for every other language this is
+ * the identity function and resolution is byte-for-byte what it was.
+ *
+ * Deliberately conservative in both directions:
+ *   - A variadic candidate (`String... xs`) accepts anything from `arity - 1`
+ *     upward, so it is never filtered out by count.
+ *   - A candidate with no recorded arity (a graph built before this field) is
+ *     kept, since absence of data is not evidence of a mismatch.
+ *   - If narrowing leaves nothing, the ORIGINAL set is returned. An empty result
+ *     would silently drop a real edge; handing the full set back lets the existing
+ *     same-file / "ambiguous" logic make the call exactly as before.
+ */
+function narrowByArity(candidates, argCount) {
+    if (argCount === undefined || candidates.length < 2)
+        return candidates;
+    const fits = candidates.filter((c) => {
+        if (c.arity === undefined)
+            return true;
+        return c.variadic ? argCount >= c.arity - 1 : c.arity === argCount;
+    });
+    return fits.length > 0 ? fits : candidates;
+}
+function resolveTypedMember(recvType, name, file, ownerMethod, classParents, argCount) {
     const MAX_DEPTH = 3;
     const visited = new Set([recvType]);
     let frontier = [recvType];
     for (let depth = 0; depth <= MAX_DEPTH && frontier.length; depth++) {
         for (const type of frontier) {
-            const candidates = ownerMethod.get(`${type}.${name}`);
-            if (!candidates || candidates.length === 0)
+            const all = ownerMethod.get(`${type}.${name}`);
+            if (!all || all.length === 0)
                 continue; // try next ancestor
+            const candidates = narrowByArity(all, argCount);
             if (candidates.length === 1) {
                 const c = candidates[0];
                 return { id: c.id, confidence: c.path === file ? "extracted" : "inferred" };
@@ -199,6 +270,41 @@ function resolveImport(spec, file, byId) {
             return c;
     return spec;
 }
+/**
+ * Resolve a Java import's fully-qualified type name to an in-repo file node;
+ * otherwise return the raw specifier (JDK or third-party type).
+ *
+ * Java names a *type*, not a path, and states no source root — `com.acme.Foo` may
+ * live under `src/main/java/`, `src/`, or a module dir. Matching on the path SUFFIX
+ * (`com/acme/Foo.java`) is therefore root-agnostic and needs no build-file parsing,
+ * which is what keeps this deterministic and dependency-free.
+ *
+ * `import static com.acme.Foo.bar` names a member, so when the full name misses, the
+ * last segment is dropped and the enclosing type retried. A wildcard (`com.acme.*`)
+ * names a package rather than one file and is deliberately left unresolved: picking a
+ * representative would invent an edge the source does not state.
+ *
+ * A suffix shared by two files (the same FQN under two source roots, e.g. a
+ * duplicated test tree) is ambiguous, so it stays unresolved rather than guessing.
+ */
+function resolveJavaImport(spec, filesBySuffix) {
+    const hit = (fqn) => {
+        const suffix = `${fqn.split(".").join("/")}.java`;
+        const files = filesBySuffix.get(suffix);
+        return files && files.length === 1 ? files[0] : null;
+    };
+    const direct = hit(spec);
+    if (direct)
+        return direct;
+    // `import static a.b.C.member` → retry as `a.b.C`.
+    const dot = spec.lastIndexOf(".");
+    if (dot > 0) {
+        const enclosing = hit(spec.slice(0, dot));
+        if (enclosing)
+            return enclosing;
+    }
+    return spec;
+}
 /**
  * Resolve a Go import package path to an in-repo file node when it points inside one of
  * the repo's modules; otherwise return the raw specifier (stdlib or third-party package).

package/dist/graph/resolve.js.map

@@ -1 +1 @@
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package/dist/graph/root.d.ts

@@ -0,0 +1,11 @@
+/** True when `dir` is a graft root of either shape — a built repo or a workspace parent. */
+export declare function hasGraftIndex(dir: string): boolean;
+export interface RootResolution {
+    /** Absolute dir to run the command against. */
+    root: string;
+    /** Directory levels walked up; 0 when the start dir was already the root (the common case). */
+    levels: number;
+}
+/** The nearest ancestor of `start` (inclusive) that holds a graft index, else `start`. */
+export declare function nearestGraftRoot(start: string, override?: string): RootResolution;
+//# sourceMappingURL=root.d.ts.map

package/dist/graph/root.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"root.d.ts","sourceRoot":"","sources":["../../src/graph/root.ts"],"names":[],"mappings":"AAqBA,4FAA4F;AAC5F,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAElD;AAED,MAAM,WAAW,cAAc;IAC7B,+CAA+C;IAC/C,IAAI,EAAE,MAAM,CAAC;IACb,+FAA+F;IAC/F,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,0FAA0F;AAC1F,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,cAAc,CAUjF"}