@nanonets/graft 0.8.0 → 0.8.2

package/dist/context/node-file.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"node-file.d.ts","sourceRoot":"","sources":["../../src/context/node-file.ts"],"names":[],"mappings":"AA8BA,uFAAuF;AACvF,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,iDAAiD;AACjD,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,sDAAsD;AACtD,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,4EAA4E;IAC5E,IAAI,EAAE,MAAM,CAAC;IACb,oDAAoD;IACpD,OAAO,EAAE,MAAM,CAAC;IAChB,iFAAiF;IACjF,OAAO,EAAE,SAAS,EAAE,CAAC;IACrB,mEAAmE;IACnE,aAAa,EAAE,MAAM,CAAC;IACtB,sBAAsB;IACtB,KAAK,EAAE,QAAQ,EAAE,CAAC;IAClB,4EAA4E;IAC5E,KAAK,EAAE,MAAM,CAAC;CACf;AAED,4DAA4D;AAC5D,MAAM,WAAW,QAAQ;IACvB,OAAO,EAAE,MAAM,CAAC;IAChB,4FAA4F;IAC5F,KAAK,EAAE,MAAM,CAAC;IACd,iFAAiF;IACjF,UAAU,EAAE,MAAM,CAAC;IACnB,qFAAqF;IACrF,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,yEAAyE;IACzE,KAAK,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QAAC,aAAa,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CACtG;AAED,eAAO,MAAM,gBAAgB,IAAI,CAAC;AAIlC,gFAAgF;AAChF,eAAO,MAAM,SAAS,WAAW,CAAC;AAElC,yEAAyE;AACzE,wBAAgB,OAAO,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAK5C;AAED,oEAAoE;AACpE,wBAAgB,aAAa,CAAC,OAAO,EAAE,SAAS,EAAE,GAAG,MAAM,CAM1D;AAED;;4DAE4D;AAC5D,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,MAAM,CAGrE;AAiBD;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,IAAI,CAevE;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,IAAI,CAiBvE;AAsBD,2DAA2D;AAC3D,wBAAgB,cAAc,CAAC,IAAI,EAAE,WAAW,GAAG,MAAM,CAexD;AAaD;;;GAGG;AACH,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,WAAW,GAAG,MAAM,CAWhE;AAED,2FAA2F;AAC3F,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,SAAS,EAAE,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;IACtB,KAAK,EAAE,QAAQ,EAAE,CAAC;CACnB;AAED,kFAAkF;AAClF,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,UAAU,EAAE,CAgBnD;AAED,gFAAgF;AAChF,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAO1D;AAED,kCAAkC;AAClC,wBAAgB,UAAU,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAG1D;AAED,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,QAAQ,GAAG,IAAI,CAGnE;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,GAAG,SAAS,CAQ9D"}

package/dist/context/node-file.js

@@ -25,6 +25,8 @@ import { readFileSync, writeFileSync, mkdirSync, existsSync, readdirSync, rmSync
 import { join, relative, sep } from "node:path";
 import matter from "gray-matter";
 import { contentHash, normalizeName } from "../util/id.js";
+// Value-only import of a constant; `write.ts` pulls in nothing from here, so no cycle.
+import { GRAPH_DIR } from "../graph/write.js";
 export const MANIFEST_VERSION = 1;
 const GEN_START = "<!-- context:generated:start -->";
 const GEN_END = "<!-- context:generated:end -->";
@@ -54,6 +56,21 @@ export function contextDirFor(root, override) {
         return override;
     return join(root, "graft");
 }
+/**
+ * Trailing `/` off a repo-relative dir path, in linear time.
+ *
+ * The obvious `replace(/\/+$/, "")` is a polynomial-ReDoS shape — `\/+$` can begin
+ * matching at any point inside a run of slashes, so a path ending in many slashes
+ * and then anything else costs O(n²). CodeQL flags it (`js/polynomial-redos`), and
+ * rightly: the input here is a `--dir` value, so it is not attacker-controlled, but
+ * the ambiguity buys nothing and a loop is both faster and plainer.
+ */
+function stripTrailingSlashes(path) {
+    let end = path.length;
+    while (end > 0 && path[end - 1] === "/")
+        end--;
+    return path.slice(0, end);
+}
 /**
  * Make sure the repo's root `.gitignore` ignores the graft output dir. The
  * graph is a local, regenerable cache (like `node_modules`), not a committed
@@ -67,7 +84,7 @@ export function ensureGitignored(root, contextDir) {
     const rel = relative(root, contextDir).split(sep).join("/");
     if (rel === "" || rel.startsWith(".."))
         return; // dir is at/above the repo root — nothing sane to ignore
-    const entry = `${rel.replace(/\/+$/, "")}/`;
+    const entry = `${stripTrailingSlashes(rel)}/`;
     const path = join(root, ".gitignore");
     let current = "";
     try {
@@ -87,6 +104,51 @@ export function ensureGitignored(root, contextDir) {
     }
     catch { /* best-effort — build already succeeded */ }
 }
+/**
+ * Keep the card tree greppable even though it's gitignored, by writing a root
+ * `.ignore` that re-admits it.
+ *
+ * The cards exist so that a `grep <symbol>` lands on a ~150-token card instead of
+ * a whole source file. Making the graph a local cache (and so gitignored) silently
+ * broke that: **ripgrep honours `.gitignore`**, and every ripgrep-backed search
+ * tool inherits the blind spot — verified by a card that names a symbol which
+ * default `rg` will not return and `rg -uu` finds instantly. `.ignore` is read at
+ * higher precedence than `.gitignore`, so re-admitting the tree there restores
+ * search without git ever tracking a byte of it.
+ *
+ * The two negative entries matter as much as the positive one: `.cache/` holds a
+ * multi-MB parse memo and `.graph/` holds `wiring.json`, and dropping either into
+ * every repo-wide search would be worse than the problem being fixed.
+ *
+ * Same contract as {@link ensureGitignored}: idempotent, skips a context dir
+ * outside `root`, and swallows write failures — a build that already succeeded
+ * must not fail over a convenience file.
+ */
+export function ensureSearchable(root, contextDir) {
+    const rel = relative(root, contextDir).split(sep).join("/");
+    if (rel === "" || rel.startsWith(".."))
+        return; // outside the repo — nothing to re-admit
+    const dir = stripTrailingSlashes(rel);
+    const entry = `!${dir}/`;
+    const path = join(root, ".ignore");
+    let current = "";
+    try {
+        current = readFileSync(path, "utf8");
+    }
+    catch { /* no .ignore yet — we create one */ }
+    // Any mention of the negation means a human (or a previous build) has already
+    // had an opinion here; leave it alone rather than append a second copy.
+    if (current.split("\n").some((l) => l.trim() === entry))
+        return;
+    const gap = current === "" ? "" : current.endsWith("\n") ? "\n" : "\n\n";
+    const block = `${gap}# graft's cards are gitignored but should stay greppable: ripgrep reads\n` +
+        `# .ignore before .gitignore, so this re-admits the tree to search only.\n` +
+        `${entry}\n${dir}/${CACHE_DIR}/\n${dir}/${GRAPH_DIR}/\n`;
+    try {
+        writeFileSync(path, current + block);
+    }
+    catch { /* best-effort */ }
+}
 /** Render the generated body (Summary + Related) for a node. */
 function renderGenerated(node) {
     const lines = [`## Summary`, ``, node.summary.trim() || "_(no summary)_", ``];

package/dist/context/node-file.js.map

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package/dist/engine.d.ts

@@ -32,6 +32,8 @@ export interface GraphRunOptions {
     llm?: boolean;
     /** Max files summarized in parallel during the LLM pass. */
     concurrency?: number;
+    /** Replay unchanged files from the extraction cache (default true). */
+    reuse?: boolean;
     onProgress?: GraphBuildOptions["onProgress"];
 }
 export declare class Graft {

package/dist/engine.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../src/engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AACH,OAAO,EAAiB,KAAK,YAAY,EAAuB,MAAM,mBAAmB,CAAC;AAM1F,OAAO,EAAgB,eAAe,EAAE,KAAK,aAAa,EAAE,KAAK,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACzG,OAAO,EAAgB,KAAK,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACpE,OAAO,EAAc,KAAK,iBAAiB,EAAE,KAAK,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAC7F,OAAO,EAAc,KAAK,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACrE,OAAO,EAAO,KAAK,SAAS,EAAE,MAAM,cAAc,CAAC;AAEnD,OAAO,EAAE,eAAe,EAAE,CAAC;AAC3B,YAAY,EAAE,WAAW,EAAE,aAAa,EAAE,WAAW,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,SAAS,EAAE,CAAC;AAEvG,MAAM,WAAW,WAAW;IAC1B,oEAAoE;IACpE,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,yCAAyC;IACzC,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,aAAa,KAAK,IAAI,CAAC;CAC5C;AAED,MAAM,WAAW,eAAe;IAC9B,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,eAAe;IAC9B,8EAA8E;IAC9E,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,4DAA4D;IAC5D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,iBAAiB,CAAC,YAAY,CAAC,CAAC;CAC9C;AAED,qBAAa,KAAK;IAChB,OAAO,CAAC,GAAG,CAAiB;gBAEhB,MAAM,GAAE,YAAiB;IAIrC,0DAA0D;IACpD,IAAI,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,WAAgB,GAAG,OAAO,CAAC,WAAW,CAAC;IAWrE,wFAAwF;IACxF,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,eAAoB,GAAG,WAAW;IAI3D,wFAAwF;IACxF,UAAU,CAAC,GAAG,EAAE,MAAM,GAAG,gBAAgB;IAIzC;;;;OAIG;IACH,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,eAAoB,GAAG,OAAO,CAAC,gBAAgB,CAAC;IASzE;;;;OAIG;IACH,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,GAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,OAAO,CAAC;QAAC,IAAI,CAAC,EAAE,OAAO,CAAC;QAAC,EAAE,CAAC,EAAE,MAAM,CAAA;KAAO,GAAG,SAAS;IAUxH,OAAO,CAAC,UAAU,CAAC,CAAY;IAE/B,oFAAoF;IACpF,OAAO,CAAC,SAAS;IAmBjB,OAAO,CAAC,WAAW;IAInB,iEAAiE;IACjE,OAAO,CAAC,cAAc;IAItB,OAAO,CAAC,UAAU;IAIlB,kEAAkE;IAClE,OAAO,CAAC,UAAU;CAKnB"}
+{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../src/engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AACH,OAAO,EAAiB,KAAK,YAAY,EAAuB,MAAM,mBAAmB,CAAC;AAM1F,OAAO,EAAgB,eAAe,EAAE,KAAK,aAAa,EAAE,KAAK,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACzG,OAAO,EAAgB,KAAK,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACpE,OAAO,EAAc,KAAK,iBAAiB,EAAE,KAAK,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAC7F,OAAO,EAAc,KAAK,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACrE,OAAO,EAAO,KAAK,SAAS,EAAE,MAAM,cAAc,CAAC;AAEnD,OAAO,EAAE,eAAe,EAAE,CAAC;AAC3B,YAAY,EAAE,WAAW,EAAE,aAAa,EAAE,WAAW,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,SAAS,EAAE,CAAC;AAEvG,MAAM,WAAW,WAAW;IAC1B,oEAAoE;IACpE,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,yCAAyC;IACzC,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,aAAa,KAAK,IAAI,CAAC;CAC5C;AAED,MAAM,WAAW,eAAe;IAC9B,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,eAAe;IAC9B,8EAA8E;IAC9E,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,4DAA4D;IAC5D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,uEAAuE;IACvE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,iBAAiB,CAAC,YAAY,CAAC,CAAC;CAC9C;AAED,qBAAa,KAAK;IAChB,OAAO,CAAC,GAAG,CAAiB;gBAEhB,MAAM,GAAE,YAAiB;IAIrC,0DAA0D;IACpD,IAAI,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,WAAgB,GAAG,OAAO,CAAC,WAAW,CAAC;IAWrE,wFAAwF;IACxF,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,eAAoB,GAAG,WAAW;IAI3D,wFAAwF;IACxF,UAAU,CAAC,GAAG,EAAE,MAAM,GAAG,gBAAgB;IAIzC;;;;OAIG;IACH,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,eAAoB,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAUzE;;;;OAIG;IACH,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,GAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,OAAO,CAAC;QAAC,IAAI,CAAC,EAAE,OAAO,CAAC;QAAC,EAAE,CAAC,EAAE,MAAM,CAAA;KAAO,GAAG,SAAS;IAUxH,OAAO,CAAC,UAAU,CAAC,CAAY;IAE/B,oFAAoF;IACpF,OAAO,CAAC,SAAS;IAmBjB,OAAO,CAAC,WAAW;IAInB,iEAAiE;IACjE,OAAO,CAAC,cAAc;IAItB,OAAO,CAAC,UAAU;IAIlB,kEAAkE;IAClE,OAAO,CAAC,UAAU;CAKnB"}

package/dist/engine.js

@@ -55,6 +55,7 @@ export class Graft {
             contextDir: this.cfg.contextDir,
             summarizer: opts.llm ? this.cruxSummarizer() : undefined,
             concurrency: opts.concurrency,
+            reuse: opts.reuse,
             onProgress: opts.onProgress,
         });
     }

package/dist/engine.js.map

@@ -1 +1 @@
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package/dist/graph/build.d.ts

@@ -1,9 +1,18 @@
 import { type EnrichStats } from "./enrich.js";
 import type { Kind, Relation } from "./types.js";
 import type { CruxSummarizer } from "../ai/crux.js";
+export { listSourceFiles } from "./source-files.js";
 export interface GraphBuildOptions {
     /** Override the output dir (default: `<root>/.context`). */
     contextDir?: string;
+    /** Replay unchanged files from the extraction cache instead of re-parsing them
+     * (default true). False forces a cold parse of the whole repo. */
+    reuse?: boolean;
+    /** Write only what a query reads — the graph, the `ask` sidecar, the freshness
+     * record — and skip the markdown projections and the `.gitignore` touch. Set by
+     * the pre-query refresh (`graph/refresh.ts`); an explicit `graft build` never
+     * sets it. See the write block in {@link buildGraph} for why the split exists. */
+    graphOnly?: boolean;
     /** Run the Tier-2 LLM meaning pass. Absent → Tier-1 only (cache is still preserved). */
     summarizer?: CruxSummarizer;
     /** Max files summarized in parallel during the Tier-2 pass. Default is set in enrich. */
@@ -21,6 +30,10 @@ export interface GraphBuildResult {
     /** Per-file wiring cards written (Tier-2 passive surface). */
     cards: number;
     files: number;
+    /** Files re-parsed this run (the rest were replayed from the extraction cache). */
+    parsed: number;
+    /** Files replayed from the extraction cache. */
+    reused: number;
     nodes: number;
     edges: number;
     byKind: Record<Kind, number>;
@@ -29,7 +42,5 @@ export interface GraphBuildResult {
     meaning: EnrichStats;
     errors: string[];
 }
-/** The source files a graph build parses: supported languages, minus the output dir. */
-export declare function listSourceFiles(root: string, outDir: string): string[];
 export declare function buildGraph(dir: string, opts?: GraphBuildOptions): Promise<GraphBuildResult>;
 //# sourceMappingURL=build.d.ts.map

package/dist/graph/build.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../src/graph/build.ts"],"names":[],"mappings":"AAeA,OAAO,EAAe,KAAK,WAAW,EAAE,MAAM,aAAa,CAAC;AAK5D,OAAO,KAAK,EAAW,IAAI,EAAU,QAAQ,EAAW,MAAM,YAAY,CAAC;AAC3E,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AA2BpD,MAAM,WAAW,iBAAiB;IAChC,4DAA4D;IAC5D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,wFAAwF;IACxF,UAAU,CAAC,EAAE,cAAc,CAAC;IAC5B,yFAAyF;IACzF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE;QAClB,KAAK,EAAE,OAAO,GAAG,QAAQ,CAAC;QAC1B,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,IAAI,EAAE,MAAM,CAAC;KACd,KAAK,IAAI,CAAC;CACZ;AAED,MAAM,WAAW,gBAAgB;IAC/B,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,8DAA8D;IAC9D,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAC7B,UAAU,EAAE,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACrC,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,OAAO,EAAE,WAAW,CAAC;IACrB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAED,wFAAwF;AACxF,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,CAEtE;AAsBD,wBAAsB,UAAU,CAC9B,GAAG,EAAE,MAAM,EACX,IAAI,GAAE,iBAAsB,GAC3B,OAAO,CAAC,gBAAgB,CAAC,CA+G3B"}
+{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../src/graph/build.ts"],"names":[],"mappings":"AA8BA,OAAO,EAAe,KAAK,WAAW,EAAE,MAAM,aAAa,CAAC;AAK5D,OAAO,KAAK,EAAW,IAAI,EAAU,QAAQ,EAAW,MAAM,YAAY,CAAC;AAC3E,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAEpD,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AA2BpD,MAAM,WAAW,iBAAiB;IAChC,4DAA4D;IAC5D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB;sEACkE;IAClE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB;;;sFAGkF;IAClF,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,wFAAwF;IACxF,UAAU,CAAC,EAAE,cAAc,CAAC;IAC5B,yFAAyF;IACzF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE;QAClB,KAAK,EAAE,OAAO,GAAG,QAAQ,CAAC;QAC1B,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,IAAI,EAAE,MAAM,CAAC;KACd,KAAK,IAAI,CAAC;CACZ;AAED,MAAM,WAAW,gBAAgB;IAC/B,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,8DAA8D;IAC9D,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,mFAAmF;IACnF,MAAM,EAAE,MAAM,CAAC;IACf,gDAAgD;IAChD,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAC7B,UAAU,EAAE,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACrC,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,OAAO,EAAE,WAAW,CAAC;IACrB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAsBD,wBAAsB,UAAU,CAC9B,GAAG,EAAE,MAAM,EACX,IAAI,GAAE,iBAAsB,GAC3B,OAAO,CAAC,gBAAgB,CAAC,CA4L3B"}

package/dist/graph/build.js

@@ -6,18 +6,29 @@
  *   2. Parse each with tree-sitter and emit one NodeV1 per definition.
  *   3. Write a sorted graph.json.
  * Edges (M2) and LLM summary/crux (M3) layer onto this without changing it.
+ *
+ * Step 2 is memoized per file (`extract-cache.ts`): a file whose bytes haven't
+ * moved replays its last parse instead of re-running tree-sitter, so a rebuild
+ * costs ~the files that changed. Everything after extraction still runs over the
+ * whole node set, so an incremental build's output is byte-identical to a cold
+ * one — the invariant `test/graph-incremental.test.ts` pins down.
  */
 import { readFileSync } from "node:fs";
 import { basename, dirname, relative, resolve, sep } from "node:path";
 import { walkDir } from "../ingest/fs.js";
-import { contextDirFor, ensureGitignored } from "../context/node-file.js";
+import { contextDirFor, ensureGitignored, ensureSearchable } from "../context/node-file.js";
 import { extractFile, languageOf } from "./extract.js";
+import { contentHash } from "../util/id.js";
+import { emptyExtractCache, readExtractCache, writeExtractCache, } from "./extract-cache.js";
+import { writeFingerprint } from "./fingerprint.js";
+import { listSourceStats } from "./source-files.js";
 import { resolveEdges } from "./resolve.js";
 import { enrichGraph } from "./enrich.js";
 import { readGraph, writeGraph, wiringPath } from "./write.js";
 import { writeCards, writeIndex, writeCovers } from "./cards.js";
 import { writeAskIndex } from "../ask/index-file.js";
 import { discoverScopes, scopeOf } from "./scopes.js";
+export { listSourceFiles } from "./source-files.js";
 /** Minimum non-file node count for a discovered sub-scope to stand on its own
  * (over-split guard 3). A scope with fewer nodes than this is folded into the
  * root scope — node counts aren't known until after the graph is assembled,
@@ -45,10 +56,6 @@ function applyMinSubstanceGuard(scopes, nodes) {
     }
     return kept;
 }
-/** The source files a graph build parses: supported languages, minus the output dir. */
-export function listSourceFiles(root, outDir) {
-    return walkDir(root).filter((f) => !f.startsWith(outDir) && languageOf(f) !== null);
-}
 /** Every Go module in the repo: each `go.mod`'s declared `module` path and the repo
  * directory it lives in (posix, `.` for the root). Found anywhere in the tree, so a
  * monorepo whose module is in a subdir (e.g. `backend/go.mod`) resolves too. Lets edge
@@ -74,36 +81,85 @@ function readGoModules(root) {
 export async function buildGraph(dir, opts = {}) {
     const root = resolve(dir);
     const outDir = contextDirFor(root, opts.contextDir);
-    const files = listSourceFiles(root, outDir);
+    const files = listSourceStats(root, outDir);
     const discoveredScopes = discoverScopes(root);
     const nodes = [];
     const rawEdges = [];
     const sources = new Map();
     const langs = new Set();
     const errors = [];
-    files.forEach((file, i) => {
-        const rel = relative(root, file);
+    // Tier-1 memo: unchanged files replay their last parse. `entries` is rebuilt
+    // from scratch each run and keyed only by files currently on disk, so deletions
+    // fall out of both the cache and the fingerprint with no separate pruning pass.
+    const priorExtract = opts.reuse === false ? emptyExtractCache() : readExtractCache(outDir);
+    const entries = {};
+    let parsed = 0;
+    let reused = 0;
+    files.forEach((f, i) => {
+        const rel = f.rel;
         opts.onProgress?.({ phase: "parse", index: i, total: files.length, file: rel });
-        const lang = languageOf(file);
+        const lang = languageOf(f.abs);
+        const cached = priorExtract.files[rel];
+        // Every file is read and hashed, every build — only the *parse* is memoized.
+        // The tempting optimization is to trust the probe's `(size, mtimeMs)` and skip
+        // the read too, but then `graft build` inherits the probe's blind spot: on a
+        // filesystem with coarse mtime granularity, a same-length edit inside the same
+        // second is invisible, so `graft check` reports drift (it always re-hashes) and
+        // the `graft build` it tells you to run refuses to repair it — forever. A stat
+        // may decide whether a *query* bothers rebuilding; it may not decide what the
+        // rebuild itself looks at. Reading is ~0.05ms/file against the ~4.6ms parse
+        // this still skips.
         let source;
         try {
-            source = readFileSync(file, "utf8");
+            source = readFileSync(f.abs, "utf8");
         }
         catch (err) {
-            errors.push(`${rel}: ${err instanceof Error ? err.message : String(err)}`);
+            const message = `${rel}: ${err instanceof Error ? err.message : String(err)}`;
+            errors.push(message);
+            // Record it anyway (with the stat we do have) so the freshness probe's
+            // fast path doesn't report this file as new on every single query.
+            entries[rel] = { size: f.size, mtimeMs: f.mtimeMs, hash: "", nodes: [], rawEdges: [], error: message };
             return;
         }
+        const hash = contentHash(source);
+        if (cached && hash === cached.hash) {
+            entries[rel] = { ...cached, size: f.size, mtimeMs: f.mtimeMs };
+            sources.set(rel, source);
+            reused++;
+            if (cached.error) {
+                errors.push(cached.error); // this file failed to parse last time too
+                return;
+            }
+            nodes.push(...cached.nodes);
+            rawEdges.push(...cached.rawEdges);
+            langs.add(lang);
+            return;
+        }
+        parsed++;
         try {
             const { nodes: fileNodes, rawEdges: fileEdges } = extractFile(rel, source, lang);
             nodes.push(...fileNodes);
             rawEdges.push(...fileEdges);
             sources.set(rel, source);
             langs.add(lang);
+            entries[rel] = { size: f.size, mtimeMs: f.mtimeMs, hash, nodes: fileNodes, rawEdges: fileEdges };
         }
         catch (err) {
-            errors.push(`${rel}: parse failed — ${err instanceof Error ? err.message : String(err)}`);
+            const message = `${rel}: parse failed — ${err instanceof Error ? err.message : String(err)}`;
+            errors.push(message);
+            entries[rel] = { size: f.size, mtimeMs: f.mtimeMs, hash, nodes: [], rawEdges: [], error: message };
         }
     });
+    // Persist the memo BEFORE enrichment, because `enrichGraph` mutates these very
+    // node objects (summary/crux/summary_state) and the cache must only ever hold
+    // pristine Tier-1 output — otherwise a replayed node would arrive pre-enriched
+    // and a cold build and an incremental build could disagree. The meaning layer
+    // has its own cache (wiring.json itself, keyed on body_hash); this one is
+    // strictly about not re-parsing.
+    writeExtractCache(outDir, {
+        ...emptyExtractCache(),
+        files: entries,
+    });
     const edges = resolveEdges(nodes, rawEdges, { goModules: readGoModules(root) });
     // graph.json is its own Tier-2 cache: fold in the prior meaning layer so an
     // unchanged body is never re-summarized (and a Tier-1-only run never wipes it).
@@ -130,9 +186,6 @@ export async function buildGraph(dir, opts = {}) {
         edges,
     };
     const graphPath = writeGraph(graph, outDir);
-    // The graph is a local, regenerable cache — make sure git ignores it. Runs on
-    // every build (cheap, idempotent), so a fresh clone's first build self-ignores.
-    ensureGitignored(root, outDir);
     // `ask`'s token/IDF sidecar — moves per-query corpus tokenization to build
     // time (~45% of query time on a 32k-node graph, profiled). Lives in the
     // cache dir; `ask` falls back to live tokenization when it's absent/stale.
@@ -150,13 +203,36 @@ export async function buildGraph(dir, opts = {}) {
     catch (err) {
         errors.push(`ask-index: ${err instanceof Error ? err.message : String(err)}`);
     }
+    // The fingerprint claims exactly one thing: "the graph on disk was built from
+    // these source bytes." Nothing about the projections below — which is why it is
+    // safe to write here, and why `graphOnly` builds (the query path, which stops
+    // right after this line) are still recorded as fresh.
+    writeFingerprint(outDir, entries);
     // Tier-2 passive surface: project the nodes into per-file markdown cards, and
     // refresh the INDEX roster. Pure projection — no LLM, no network.
-    const cardStats = writeCards(graph, outDir);
-    writeIndex(outDir, cardStats.files);
-    // Backfill concept nodes with their `covers:` symbol/file:line list (the
-    // OKF↔Wiring link). No-op when there are no concept nodes (a $0 build).
-    writeCovers(graph, outDir);
+    //
+    // Skipped entirely on the query path (`graphOnly`). Retrieval answers from
+    // wiring.json and the ask sidecar; the markdown surface is for humans and for
+    // the agent's own greps, and it is rebuilt by an explicit `graft build` — which
+    // is what the Claude Code `Stop` hook already runs at the end of a turn. Keeping
+    // it off the query path is what makes a refresh cheap, leaves the repo untouched
+    // (`ensureGitignored` writes `.gitignore`, which a read has no business doing),
+    // and means a failure here can never be triggered by a query.
+    let cardStats = { written: 0, pruned: 0, files: [] };
+    if (!opts.graphOnly) {
+        // The graph is a local, regenerable cache — make sure git ignores it. Cheap and
+        // idempotent, so a fresh clone's first build self-ignores.
+        ensureGitignored(root, outDir);
+        // …and that gitignoring it doesn't hide the cards from search: ripgrep honours
+        // .gitignore, so without this the cards can never be grepped, which is the one
+        // way an agent was supposed to stumble onto them.
+        ensureSearchable(root, outDir);
+        cardStats = writeCards(graph, outDir);
+        writeIndex(outDir, cardStats.files);
+        // Backfill concept nodes with their `covers:` symbol/file:line list (the
+        // OKF↔Wiring link). No-op when there are no concept nodes (a $0 build).
+        writeCovers(graph, outDir);
+    }
     const byKind = {};
     for (const n of nodes)
         byKind[n.kind] = (byKind[n.kind] ?? 0) + 1;
@@ -168,6 +244,8 @@ export async function buildGraph(dir, opts = {}) {
         graphPath,
         cards: cardStats.written,
         files: files.length,
+        parsed,
+        reused,
         nodes: nodes.length,
         edges: edges.length,
         byKind,

package/dist/graph/build.js.map

@@ -1 +1 @@
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package/dist/graph/cards.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cards.d.ts","sourceRoot":"","sources":["../../src/graph/cards.ts"],"names":[],"mappings":"AAmBA,OAAO,KAAK,EAAE,OAAO,EAAU,MAAM,YAAY,CAAC;AAMlD,MAAM,WAAW,YAAY;IAC3B,yEAAyE;IACzE,IAAI,EAAE,MAAM,CAAC;IACb,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,YAAY,EAAE,CAAC;CACvB;AA4GD;;;GAGG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,SAAS,CAiCpE;AAED;;;GAGG;AACH,wBAAgB,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,GAAG,IAAI,CAyCtE;AAED,iFAAiF;AACjF,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,2EAA2E;IAC3E,EAAE,EAAE,MAAM,CAAC;CACZ;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAoClE"}

package/dist/graph/cards.js

@@ -165,6 +165,14 @@ export function writeIndex(outDir, files) {
         'filename here, or run `graft ask "<task>"`. Each node carries prose plus exact',
         "`file:line`; open a source file only to edit the named span.",
         "",
+        // Whoever reads this file has already decided to look at graft, so this is the
+        // one place a pointer to the richer surface is welcome rather than noise. Stated
+        // as what exists, not as an instruction — see `mcp/instructions.ts` for why.
+        "The same graph is queryable as MCP tools (`graft_find_code`, `graft_find_all`,",
+        "`graft_trace_calls`, `graft_file_api`, `graft_repo_map`) where a host exposes them, and",
+        "as the `graft` CLI everywhere else. Edges — who calls what — live only in the",
+        "graph, not in these files: `graft callers <symbol>` is the only way to read them.",
+        "",
     ];
     const concepts = readNodes(outDir).sort((a, b) => a.slug.localeCompare(b.slug));
     if (concepts.length) {

package/dist/graph/cards.js.map

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