@nanonets/graft 0.7.1 → 0.8.1

package/dist/cli.js

@@ -12,14 +12,18 @@ import { Graft } from "./engine.js";
 import { resolveConfig } from "./ai/providers.js";
 import { formatCheckReport } from "./context/check.js";
 import { formatGraphCheckReport } from "./graph/check.js";
-import { runInit } from "./claude/init.js";
+import { buildGraphIfMissing, runInit } from "./claude/init.js";
 import { runHostsInit } from "./hosts/init.js";
 import { hostIds } from "./hosts/registry.js";
 import { contextDirFor } from "./context/node-file.js";
 import { loadGraphCached } from "./graph/load.js";
+import { ensureFreshChildren, ensureFreshGraph, refreshNote } from "./graph/refresh.js";
 import { isWorkspaceBuildRoot, readWorkspace } from "./graph/workspace.js";
 import { runWorkspaceAsk, runWorkspaceBuild, runWorkspaceCallers, runWorkspaceCheck, runWorkspaceGrep, runWorkspaceMap, } from "./graph/workspace-cli.js";
 import { formatInitEpilogue } from "./cli-epilogue.js";
+import { planInit, selectedWrites } from "./hosts/plan.js";
+import { formatNonInteractiveHelp, formatPlan, runPicker } from "./cli-picker.js";
+import { homedir } from "node:os";
 import { formatUpgradeReport, formatVersionReport, getNpmViewVersion, readCurrentVersion, runUpgrade } from "./cli-meta.js";
 const program = new Command();
 const currentVersion = readCurrentVersion(import.meta.url);
@@ -44,6 +48,27 @@ function cliConfig() {
     };
 }
 const engineFrom = () => new Graft(cliConfig());
+/**
+ * Bring the graph up to date with the working tree before a query answers from it
+ * — the same gate the MCP tools run (see `graph/refresh.ts`). Cheap when nothing
+ * moved; a structural, $0 rebuild when it did. The note goes to stderr so `--json`
+ * stdout stays machine-readable.
+ */
+async function refreshBefore(dir, opts) {
+    const globalDir = program.opts().dir;
+    const root = resolve(dir);
+    const disabled = opts.refresh === false;
+    const ws = readWorkspace(root, globalDir);
+    const r = ws
+        ? await ensureFreshChildren(root, ws.children, { contextDir: globalDir, disabled })
+        : await ensureFreshGraph(root, { contextDir: globalDir, disabled });
+    const note = refreshNote(r);
+    if (note)
+        console.error(note);
+}
+/** Attached to every query command: `--no-refresh` answers from the graph exactly
+ * as it is on disk, no rebuild. */
+const NO_REFRESH_FLAG = ["--no-refresh", "skip the freshness check — answer from the graph as-is"];
 program
     .command("version")
     .description("Print the installed version and the latest published on npm")
@@ -68,6 +93,7 @@ program
     .option("--deep", "run the LLM pass: concept nodes (graft/*.md) + per-symbol summary/crux")
     .option("-e, --extensions <exts...>", 'code extensions to include (e.g. ".ts" ".py")')
     .option("-j, --concurrency <n>", "files summarized in parallel during --deep (default 5)")
+    .option("--no-reuse", "re-parse every file instead of replaying unchanged ones from the extraction cache")
     .action(async (dir, opts) => {
     const concurrency = opts.concurrency ? Math.max(1, Number(opts.concurrency)) : undefined;
     if (opts.concurrency && !Number.isFinite(concurrency)) {
@@ -119,10 +145,12 @@ program
     const g = await engine.graph(dir, {
         llm: deep,
         concurrency,
+        reuse: opts.reuse,
         onProgress: ({ phase, index, total, file }) => process.stderr.write(`\r${phase === "enrich" ? "summarizing" : "parsing"} ${index + 1}/${total}: ${file.slice(0, 50).padEnd(50)}`),
     });
     process.stderr.write("\n");
     console.log(`✓ wiring: ${g.nodes} nodes (${fmt(g.byKind)}), ${g.edges} edges, ${g.cards} cards [${g.languages.join(", ")}]`);
+    console.log(`  parsed: ${g.parsed} of ${g.files} files (${g.reused} replayed from cache)`);
     if (deep) {
         const m = g.meaning;
         console.log(`  meaning: ${m.computed} computed, ${m.cached} cached, ${m.stale} stale, ${m.pending} pending`);
@@ -143,7 +171,9 @@ program
     .option("--full", "with --source: inline whole definition spans instead of the default ≤8-line crux excerpts")
     .option("--in <path>", "narrow to nodes under this path prefix, filtered before scoring (segment-aware, like scopeOf)")
     .option("--json", "output the result as JSON")
+    .option(...NO_REFRESH_FLAG)
     .action(async (query, dir, opts) => {
+    await refreshBefore(dir, opts);
     const askGlobalDir = program.opts().dir;
     if (readWorkspace(resolve(dir), askGlobalDir)) {
         runWorkspaceAsk(resolve(dir), askGlobalDir, query, {
@@ -175,7 +205,9 @@ program
     .argument("<file>", "repo-relative path (or unique basename) of the file")
     .argument("[dir]", "repository root", ".")
     .option("--json", "output the result as JSON")
+    .option(...NO_REFRESH_FLAG)
     .action(async (file, dir, opts) => {
+    await refreshBefore(dir, opts);
     const { skeleton, formatSkeleton } = await import("./ask/ask.js");
     const globalOpts = program.opts();
     const r = skeleton(dir, file, { contextDir: globalOpts.dir });
@@ -268,19 +300,23 @@ program
 });
 program
     .command("callers")
-    .description("Who calls/references a symbol ($0, no LLM). --direction out gives callees (what it calls); --depth N walks transitively for full blast radius")
+    .description("Who calls/references a symbol ($0, no LLM). --direction out gives callees (what it calls); --depth N (or all) walks transitively for full blast radius")
     .argument("<symbol>", "bare name, qualified (Class.method), or package-qualified (pkg.Fn)")
     .argument("[dir]", "repository root", ".")
     .option("--direction <in|out>", 'edge direction: "in" = callers (default), "out" = callees')
-    .option("-d, --depth <n>", "walk transitively up to N hops for blast radius (default 1)")
+    .option("-d, --depth <n>", 'walk transitively up to N hops for blast radius, or "all" for the full connected closure (default 1)')
     .option("--in <path>", "narrow matches to nodes whose path contains this substring")
     .option("--json", "output as JSON")
+    .option(...NO_REFRESH_FLAG)
     .action(async (symbol, dir, opts) => {
+    await refreshBefore(dir, opts);
     const globalOpts = program.opts();
     if (!opts.json && readWorkspace(resolve(dir), globalOpts.dir)) {
         runWorkspaceCallers(resolve(dir), globalOpts.dir, symbol, {
             direction: opts.direction === "out" ? "out" : "in",
-            depth: opts.depth ? Number(opts.depth) : undefined,
+            depth: opts.depth
+                ? (/^(all|full|max)$/i.test(opts.depth) ? Number.POSITIVE_INFINITY : Number(opts.depth))
+                : undefined,
             in: opts.in,
         });
         return;
@@ -303,7 +339,9 @@ program
     .option("--fixed", "treat pattern as a literal string, not a regex")
     .option("--in <path>", "narrow to files whose path contains this substring")
     .option("--json", "output as JSON")
+    .option(...NO_REFRESH_FLAG)
     .action(async (pattern, dir, opts) => {
+    await refreshBefore(dir, opts);
     const globalOpts = program.opts();
     if (readWorkspace(resolve(dir), globalOpts.dir)) {
         runWorkspaceGrep(resolve(dir), globalOpts.dir, pattern, {
@@ -326,6 +364,7 @@ program
     .argument("[dir]", "repository root", ".")
     .option("--max-dirs <n>", "max directory entries shown, rest counted into dropped (default 16)")
     .option("--json", "output as JSON")
+    .option(...NO_REFRESH_FLAG)
     .action(async (dir, opts) => {
     const root = resolve(dir);
     const globalOpts = program.opts();
@@ -339,6 +378,7 @@ program
         }
         maxDirsW = n;
     }
+    await refreshBefore(dir, opts); // after arg validation: a bad flag shouldn't cost a rebuild
     if (!opts.json && readWorkspace(root, globalOpts.dir)) {
         runWorkspaceMap(root, globalOpts.dir, { maxDirs: maxDirsW });
         return;
@@ -369,7 +409,10 @@ program
     .option("--list-agents", "list known agent ids and exit")
     .option("--no-mcp", "skip MCP server registration for other agents")
     .option("--no-hooks", "skip hook installation for other agents")
-    .action((dir, opts) => {
+    .option("--dry-run", "print every file init would touch, then exit without writing")
+    .option("-y, --yes", "skip the picker and wire every detected agent (the pre-0.8 default)")
+    .option("--no-global", "skip writes outside this repo (the ~/.codex/ config + hooks)")
+    .action(async (dir, opts) => {
     if (opts.listAgents) {
         for (const id of [...hostIds(), "claude"])
             console.log(id);
@@ -385,9 +428,46 @@ program
             process.exit(1);
         }
     }
-    const wantClaude = !explicit || explicit.includes("claude");
+    // Which agents to wire, decided before anything is written. Explicit flags
+    // win; otherwise prompt on a TTY, and on a pipe write nothing rather than
+    // guessing (pre-0.8 this silently wired every agent the machine had ever
+    // installed — see --yes to get that back).
+    const home = homedir();
+    const plan = planInit(repo, { home });
+    const detectedIds = plan.filter((p) => p.detected).map((p) => p.id);
+    const noAgents = opts.agents === false;
+    let ids;
+    if (explicit)
+        ids = explicit;
+    else if (opts.allAgents)
+        ids = plan.map((p) => p.id);
+    else if (noAgents)
+        ids = ["claude"];
+    else if (opts.yes || opts.dryRun)
+        ids = detectedIds;
+    else if (process.stdin.isTTY && process.stderr.isTTY) {
+        const picked = await runPicker(plan, repo, home);
+        if (picked === null) {
+            console.error("· cancelled — nothing written");
+            return;
+        }
+        ids = picked;
+    }
+    else {
+        console.error(formatNonInteractiveHelp(detectedIds));
+        return;
+    }
+    if (opts.dryRun) {
+        console.error(formatPlan(plan, ids, repo, home));
+        return;
+    }
+    if (ids.length === 0) {
+        console.error("· no agents selected — nothing written");
+        return;
+    }
+    const wantClaude = ids.includes("claude");
+    const cliPath = fileURLToPath(import.meta.url);
     if (wantClaude) {
-        const cliPath = fileURLToPath(import.meta.url);
         const res = runInit(repo, { build: opts.build, cliPath });
         console.error(`✓ wrote ${res.settingsPath}`);
         for (const s of res.shims)
@@ -403,22 +483,33 @@ program
         for (const w of res.warnings)
             console.error(`⚠ ${w}`);
     }
-    const skipOthers = opts.agents === false;
-    if (!skipOthers) {
+    // `ids` is already resolved, so hosts init is always driven by an explicit
+    // list — never by its own detection fallback.
+    const others = ids.filter((id) => id !== "claude");
+    if (others.length > 0) {
         const r = runHostsInit(repo, {
-            agents: explicit?.filter((id) => id !== "claude"),
-            all: opts.allAgents,
+            agents: others,
+            home,
             mcp: opts.mcp,
             hooks: opts.hooks,
+            global: opts.global,
         });
         for (const w of r.written)
             console.error(`✓ ${w.id}: ${w.path} (${w.action})`);
-        if (!explicit && !opts.allAgents && r.written.length === 0)
-            console.error("· no other agents detected (see --list-agents / --all-agents)");
         for (const m of r.mcp)
             console.error(`✓ mcp ${m.id}: ${m.path} (${m.action})`);
         for (const h of r.hooks)
             console.error(`✓ hook ${h.id}: ${h.path} (${h.action})`);
+        // Only worth saying when there was actually something out-of-repo to skip.
+        if (opts.global === false && selectedWrites(plan, ids).some((w) => w.scope === "global"))
+            console.error("· skipped out-of-repo writes (--no-global)");
+    }
+    // Every host's wiring points at graft/, so the graph is built whatever was
+    // selected — not only when Claude Code is in the list (runInit does its own).
+    if (!wantClaude) {
+        console.error(buildGraphIfMissing(repo, { build: opts.build, cliPath })
+            ? "✓ built the graph (graft build)"
+            : "· skipped graph build");
     }
     const globalOpts = program.opts();
     const outDir = contextDirFor(repo, globalOpts.dir);

package/dist/cli.js.map

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package/dist/context/check.d.ts

@@ -16,6 +16,27 @@ export interface CheckOptions {
     extensions?: string[];
 }
 export declare function checkContext(dir: string, opts?: CheckOptions): CheckResult;
+/** A cheap, query-time staleness signal (unlike {@link checkContext}, which
+ * re-hashes every file for CI). */
+export interface FreshnessResult {
+    /** Recorded source files that are no longer on disk. */
+    missing: number;
+    /** Total source files the manifest recorded. */
+    total: number;
+}
+/**
+ * How many recorded source files have vanished from disk — an existence-only
+ * check (stat, never a read or a hash), safe to call on a hot path like session
+ * start. This catches the common "index built on a different tree" case: a
+ * branch switch, a `git checkout` to an older commit, an unpulled move — states
+ * where graft would otherwise confidently point at files that aren't there and
+ * send the agent chasing them. Returns null when there's no graph at all.
+ */
+export declare function indexFreshness(dir: string, opts?: CheckOptions): FreshnessResult | null;
+/** One-line staleness banner for orientation/query output, or null when the
+ * index is fresh (or absent). Terse on purpose — it rides atop the orientation
+ * the agent reads first, so it must earn its tokens. */
+export declare function staleBanner(f: FreshnessResult | null): string | null;
 /** Render a check result as a human-readable report. */
 export declare function formatCheckReport(r: CheckResult): string;
 //# sourceMappingURL=check.d.ts.map

package/dist/context/check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAqBA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,OAAO,CAAC;IACZ,+DAA+D;IAC/D,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChE,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,WAAW,CAsE9E;AAED,wDAAwD;AACxD,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAyBxD"}
+{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAqBA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,OAAO,CAAC;IACZ,+DAA+D;IAC/D,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChE,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,WAAW,CAsE9E;AAED;mCACmC;AACnC,MAAM,WAAW,eAAe;IAC9B,wDAAwD;IACxD,OAAO,EAAE,MAAM,CAAC;IAChB,gDAAgD;IAChD,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,eAAe,GAAG,IAAI,CAU3F;AAED;;wDAEwD;AACxD,wBAAgB,WAAW,CAAC,CAAC,EAAE,eAAe,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAOpE;AAED,wDAAwD;AACxD,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAyBxD"}

package/dist/context/check.js

@@ -12,7 +12,7 @@
  *   coverage    a code file exists that no node was built from (new/uningested)
  *   index       a node's frontmatter disagrees with the manifest (hand-edited)
  */
-import { readFileSync } from "node:fs";
+import { existsSync, readFileSync } from "node:fs";
 import { relative, resolve } from "node:path";
 import { walkDir } from "../ingest/fs.js";
 import { contentHash } from "../util/id.js";
@@ -90,6 +90,37 @@ export function checkContext(dir, opts = {}) {
             result.indexDrift.length === 0;
     return result;
 }
+/**
+ * How many recorded source files have vanished from disk — an existence-only
+ * check (stat, never a read or a hash), safe to call on a hot path like session
+ * start. This catches the common "index built on a different tree" case: a
+ * branch switch, a `git checkout` to an older commit, an unpulled move — states
+ * where graft would otherwise confidently point at files that aren't there and
+ * send the agent chasing them. Returns null when there's no graph at all.
+ */
+export function indexFreshness(dir, opts = {}) {
+    const root = resolve(dir);
+    const outDir = contextDirFor(root, opts.contextDir);
+    const manifest = readManifest(outDir);
+    if (!manifest)
+        return null;
+    let missing = 0;
+    for (const ref of manifest.files) {
+        if (!existsSync(resolve(root, ref.path)))
+            missing++;
+    }
+    return { missing, total: manifest.files.length };
+}
+/** One-line staleness banner for orientation/query output, or null when the
+ * index is fresh (or absent). Terse on purpose — it rides atop the orientation
+ * the agent reads first, so it must earn its tokens. */
+export function staleBanner(f) {
+    if (!f || f.missing === 0)
+        return null;
+    return (`⚠ graft's index may be ahead of your working tree: ${f.missing} of ${f.total} indexed ` +
+        `files are not on disk (branch switch or uncommitted move?). If graft names a path that ` +
+        `isn't there, don't chase it — \`graft grep\` the symbol to find where it lives now; run \`graft build\` to refresh.`);
+}
 /** Render a check result as a human-readable report. */
 export function formatCheckReport(r) {
     if (r.missing) {

package/dist/context/check.js.map

@@ -1 +1 @@
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+{"version":3,"file":"check.js","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AACH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACnD,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAC9C,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAC1C,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAC7C,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAiBxE,MAAM,UAAU,YAAY,CAAC,GAAW,EAAE,OAAqB,EAAE;IAC/D,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;IAC1B,MAAM,MAAM,GAAG,aAAa,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;IACpD,MAAM,IAAI,GAAG,IAAI,CAAC,UAAU,IAAI,eAAe,CAAC;IAEhD,MAAM,MAAM,GAAgB;QAC1B,EAAE,EAAE,KAAK;QACT,OAAO,EAAE,KAAK;QACd,YAAY,EAAE,EAAE;QAChB,OAAO,EAAE,EAAE;QACX,QAAQ,EAAE,EAAE;QACZ,UAAU,EAAE,EAAE;KACf,CAAC;IAEF,MAAM,QAAQ,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC;IACtC,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,CAAC,OAAO,GAAG,IAAI,CAAC;QACtB,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,uDAAuD;IACvD,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC,CAAC,aAAa;IACxD,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QACjC,IAAI,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC;YAAE,SAAS;QACtC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;YAAE,SAAS;QAChE,IAAI,CAAC;YACH,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,EAAE,WAAW,CAAC,YAAY,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC;QAC7E,CAAC;QAAC,MAAM,CAAC;YACP,sEAAsE;QACxE,CAAC;IACH,CAAC;IAED,gEAAgE;IAChE,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAU,CAAC;IACnC,KAAK,MAAM,GAAG,IAAI,QAAQ,CAAC,KAAK,EAAE,CAAC;QACjC,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACvB,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAClC,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;YACtB,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAChC,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,CAAC,IAAI,EAAE,CAAC;YAC5B,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,GAAG,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACtF,CAAC;IACH,CAAC;IACD,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC;QAClC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACtD,CAAC;IAED,6EAA6E;IAC7E,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IACtE,MAAM,MAAM,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC;IACjC,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAC;IAC/B,KAAK,MAAM,IAAI,IAAI,MAAM,EAAE,CAAC;QAC1B,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACpB,MAAM,CAAC,GAAG,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACvC,IAAI,CAAC,CAAC,EAAE,CAAC;YACP,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,IAAI,6BAA6B,CAAC,CAAC;QACpE,CAAC;aAAM,IAAI,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC,aAAa,EAAE,CAAC;YAClD,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,IAAI,iCAAiC,CAAC,CAAC;QACxE,CAAC;IACH,CAAC;IACD,KAAK,MAAM,IAAI,IAAI,aAAa,CAAC,IAAI,EAAE,EAAE,CAAC;QACxC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,GAAG,IAAI,qCAAqC,CAAC,CAAC;IAC5F,CAAC;IAED,MAAM,CAAC,EAAE;QACP,MAAM,CAAC,YAAY,CAAC,MAAM,KAAK,CAAC;YAChC,MAAM,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC;YAC3B,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;YAC5B,MAAM,CAAC,UAAU,CAAC,MAAM,KAAK,CAAC,CAAC;IACjC,OAAO,MAAM,CAAC;AAChB,CAAC;AAWD;;;;;;;GAOG;AACH,MAAM,UAAU,cAAc,CAAC,GAAW,EAAE,OAAqB,EAAE;IACjE,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;IAC1B,MAAM,MAAM,GAAG,aAAa,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;IACpD,MAAM,QAAQ,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC;IACtC,IAAI,CAAC,QAAQ;QAAE,OAAO,IAAI,CAAC;IAC3B,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,KAAK,MAAM,GAAG,IAAI,QAAQ,CAAC,KAAK,EAAE,CAAC;QACjC,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;YAAE,OAAO,EAAE,CAAC;IACtD,CAAC;IACD,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;AACnD,CAAC;AAED;;wDAEwD;AACxD,MAAM,UAAU,WAAW,CAAC,CAAyB;IACnD,IAAI,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IACvC,OAAO,CACL,sDAAsD,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,KAAK,WAAW;QACxF,yFAAyF;QACzF,qHAAqH,CACtH,CAAC;AACJ,CAAC;AAED,wDAAwD;AACxD,MAAM,UAAU,iBAAiB,CAAC,CAAc;IAC9C,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC;QACd,OAAO,wFAAwF,CAAC;IAClG,CAAC;IACD,IAAI,CAAC,CAAC,EAAE;QAAE,OAAO,uDAAuD,CAAC;IAEzE,MAAM,KAAK,GAAa,CAAC,oBAAoB,EAAE,EAAE,CAAC,CAAC;IACnD,IAAI,CAAC,CAAC,YAAY,CAAC,MAAM,EAAE,CAAC;QAC1B,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,YAAY,CAAC,MAAM,IAAI,CAAC,CAAC;QAClD,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,YAAY;YAAE,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IACrF,CAAC;IACD,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC;QACrB,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,OAAO,CAAC,MAAM,IAAI,CAAC,CAAC;QAC7C,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO;YAAE,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;IACD,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC;QACtB,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,QAAQ,CAAC,MAAM,IAAI,CAAC,CAAC;QACnD,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,QAAQ;YAAE,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;IACrD,CAAC;IACD,IAAI,CAAC,CAAC,UAAU,CAAC,MAAM,EAAE,CAAC;QACxB,KAAK,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC,UAAU,CAAC,MAAM,IAAI,CAAC,CAAC;QACvD,KAAK,MAAM,CAAC,IA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package/dist/engine.d.ts

@@ -32,6 +32,8 @@ export interface GraphRunOptions {
     llm?: boolean;
     /** Max files summarized in parallel during the LLM pass. */
     concurrency?: number;
+    /** Replay unchanged files from the extraction cache (default true). */
+    reuse?: boolean;
     onProgress?: GraphBuildOptions["onProgress"];
 }
 export declare class Graft {

package/dist/engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../src/engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AACH,OAAO,EAAiB,KAAK,YAAY,EAAuB,MAAM,mBAAmB,CAAC;AAM1F,OAAO,EAAgB,eAAe,EAAE,KAAK,aAAa,EAAE,KAAK,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACzG,OAAO,EAAgB,KAAK,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACpE,OAAO,EAAc,KAAK,iBAAiB,EAAE,KAAK,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAC7F,OAAO,EAAc,KAAK,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACrE,OAAO,EAAO,KAAK,SAAS,EAAE,MAAM,cAAc,CAAC;AAEnD,OAAO,EAAE,eAAe,EAAE,CAAC;AAC3B,YAAY,EAAE,WAAW,EAAE,aAAa,EAAE,WAAW,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,SAAS,EAAE,CAAC;AAEvG,MAAM,WAAW,WAAW;IAC1B,oEAAoE;IACpE,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,yCAAyC;IACzC,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,aAAa,KAAK,IAAI,CAAC;CAC5C;AAED,MAAM,WAAW,eAAe;IAC9B,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,eAAe;IAC9B,8EAA8E;IAC9E,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,4DAA4D;IAC5D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,uEAAuE;IACvE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,iBAAiB,CAAC,YAAY,CAAC,CAAC;CAC9C;AAED,qBAAa,KAAK;IAChB,OAAO,CAAC,GAAG,CAAiB;gBAEhB,MAAM,GAAE,YAAiB;IAIrC,0DAA0D;IACpD,IAAI,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,WAAgB,GAAG,OAAO,CAAC,WAAW,CAAC;IAWrE,wFAAwF;IACxF,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,eAAoB,GAAG,WAAW;IAI3D,wFAAwF;IACxF,UAAU,CAAC,GAAG,EAAE,MAAM,GAAG,gBAAgB;IAIzC;;;;OAIG;IACH,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,eAAoB,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAUzE;;;;OAIG;IACH,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,GAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,OAAO,CAAC;QAAC,IAAI,CAAC,EAAE,OAAO,CAAC;QAAC,EAAE,CAAC,EAAE,MAAM,CAAA;KAAO,GAAG,SAAS;IAUxH,OAAO,CAAC,UAAU,CAAC,CAAY;IAE/B,oFAAoF;IACpF,OAAO,CAAC,SAAS;IAmBjB,OAAO,CAAC,WAAW;IAInB,iEAAiE;IACjE,OAAO,CAAC,cAAc;IAItB,OAAO,CAAC,UAAU;IAIlB,kEAAkE;IAClE,OAAO,CAAC,UAAU;CAKnB"}

package/dist/engine.js

@@ -55,6 +55,7 @@ export class Graft {
             contextDir: this.cfg.contextDir,
             summarizer: opts.llm ? this.cruxSummarizer() : undefined,
             concurrency: opts.concurrency,
+            reuse: opts.reuse,
             onProgress: opts.onProgress,
         });
     }

package/dist/engine.js.map

@@ -1 +1 @@
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package/dist/graph/build.d.ts

@@ -1,9 +1,18 @@
 import { type EnrichStats } from "./enrich.js";
 import type { Kind, Relation } from "./types.js";
 import type { CruxSummarizer } from "../ai/crux.js";
+export { listSourceFiles } from "./source-files.js";
 export interface GraphBuildOptions {
     /** Override the output dir (default: `<root>/.context`). */
     contextDir?: string;
+    /** Replay unchanged files from the extraction cache instead of re-parsing them
+     * (default true). False forces a cold parse of the whole repo. */
+    reuse?: boolean;
+    /** Write only what a query reads — the graph, the `ask` sidecar, the freshness
+     * record — and skip the markdown projections and the `.gitignore` touch. Set by
+     * the pre-query refresh (`graph/refresh.ts`); an explicit `graft build` never
+     * sets it. See the write block in {@link buildGraph} for why the split exists. */
+    graphOnly?: boolean;
     /** Run the Tier-2 LLM meaning pass. Absent → Tier-1 only (cache is still preserved). */
     summarizer?: CruxSummarizer;
     /** Max files summarized in parallel during the Tier-2 pass. Default is set in enrich. */
@@ -21,6 +30,10 @@ export interface GraphBuildResult {
     /** Per-file wiring cards written (Tier-2 passive surface). */
     cards: number;
     files: number;
+    /** Files re-parsed this run (the rest were replayed from the extraction cache). */
+    parsed: number;
+    /** Files replayed from the extraction cache. */
+    reused: number;
     nodes: number;
     edges: number;
     byKind: Record<Kind, number>;
@@ -29,7 +42,5 @@ export interface GraphBuildResult {
     meaning: EnrichStats;
     errors: string[];
 }
-/** The source files a graph build parses: supported languages, minus the output dir. */
-export declare function listSourceFiles(root: string, outDir: string): string[];
 export declare function buildGraph(dir: string, opts?: GraphBuildOptions): Promise<GraphBuildResult>;
 //# sourceMappingURL=build.d.ts.map

package/dist/graph/build.d.ts.map

@@ -1 +1 @@
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