@nanonets/graft 0.3.2 → 0.4.0

package/dist/ask/ask.d.ts

@@ -34,6 +34,10 @@ export interface AskOptions {
     /** Inline the source at each `path:Lx-Ly` hit, sliced from `dir`. Turns the
      * pack from a locator into a retriever so the agent needn't re-open the file. */
     source?: boolean;
+    /** Re-rank lexical hits by graph connectivity (personalized PageRank over the
+     * wiring edges), demoting same-word collisions and rescuing strongly-connected
+     * neighbours the query didn't name. On by default; set false for pure lexical. */
+    graphRank?: boolean;
 }
 /** Answer a query from the graft/ graph at `dir`. Deterministic, $0. */
 export declare function ask(dir: string, query: string, opts?: AskOptions): AskResult;

package/dist/ask/ask.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ask.d.ts","sourceRoot":"","sources":["../../src/ask/ask.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAA2B,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAE3E,MAAM,WAAW,MAAM;IACrB,IAAI,EAAE,SAAS,GAAG,QAAQ,GAAG,QAAQ,GAAG,QAAQ,CAAC;IACjD,KAAK,EAAE,MAAM,CAAC;IACd,oEAAoE;IACpE,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd;;qFAEiF;IACjF,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAMD,MAAM,WAAW,SAAS;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,YAAY,GAAG,SAAS,GAAG,OAAO,CAAC;IACzC,kEAAkE;IAClE,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd;;sFAEkF;IAClF,KAAK,CAAC,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,aAAa,EAAE,MAAM,CAAA;KAAE,CAAC;CAClD;AAmMD,MAAM,WAAW,UAAU;IACzB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;qFACiF;IACjF,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAwED,wEAAwE;AACxE,wBAAgB,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,GAAE,UAAe,GAAG,SAAS,CAoBhF;AAOD,sEAAsE;AACtE,wBAAgB,SAAS,CAAC,CAAC,EAAE,SAAS,GAAG,MAAM,CAwB9C"}
+{"version":3,"file":"ask.d.ts","sourceRoot":"","sources":["../../src/ask/ask.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAA2B,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAG3E,MAAM,WAAW,MAAM;IACrB,IAAI,EAAE,SAAS,GAAG,QAAQ,GAAG,QAAQ,GAAG,QAAQ,CAAC;IACjD,KAAK,EAAE,MAAM,CAAC;IACd,oEAAoE;IACpE,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd;;qFAEiF;IACjF,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAMD,MAAM,WAAW,SAAS;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,YAAY,GAAG,SAAS,GAAG,OAAO,CAAC;IACzC,kEAAkE;IAClE,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd;;sFAEkF;IAClF,KAAK,CAAC,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,aAAa,EAAE,MAAM,CAAA;KAAE,CAAC;CAClD;AAwUD,MAAM,WAAW,UAAU;IACzB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;qFACiF;IACjF,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB;;sFAEkF;IAClF,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAwED,wEAAwE;AACxE,wBAAgB,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,GAAE,UAAe,GAAG,SAAS,CAqBhF;AAOD,sEAAsE;AACtE,wBAAgB,SAAS,CAAC,CAAC,EAAE,SAAS,GAAG,MAAM,CAwB9C"}

package/dist/ask/ask.js

@@ -18,6 +18,7 @@ import { join, resolve } from "node:path";
 import matter from "gray-matter";
 import { contextDirFor } from "../context/node-file.js";
 import { readGraph, wiringPath } from "../graph/write.js";
+import { personalizedPageRank } from "./graphrank.js";
 /** Max source lines to inline per hit — a definition longer than this is
  * truncated with a marker, so one giant function can't blow up the pack. */
 const MAX_SPAN_LINES = 80;
@@ -78,13 +79,51 @@ function loadCorpus(outDir) {
     }
     return { concepts, graph: readGraph(wiringPath(outDir)) };
 }
-/** Score a document's token counts against the query counts (name field pre-weighted by caller). */
-function score(query, doc) {
+/** Score a document's token counts against the query counts (name field
+ * pre-weighted by caller). Each shared term is weighted by its inverse document
+ * frequency (`idf`), so a word that appears in many nodes — "overlay" across a
+ * whole widget subsystem, or a repeated word in a pasted issue body — counts for
+ * far less than a rare, discriminating identifier ("scrolling"). Without idf,
+ * pure term-frequency lets an incidental common word dominate the ranking; this
+ * is the lexical half of the keyword-collision fix (graph-rank is the other). */
+function score(query, doc, idf) {
     let s = 0;
     for (const [t, qn] of query) {
         const dn = doc.get(t);
         if (dn)
-            s += qn * dn;
+            s += qn * dn * (idf.get(t) ?? 1);
+    }
+    return s;
+}
+/** Inverse document frequency over the scored corpus. `df` counts how many
+ * documents (concept nodes + symbol nodes) contain each token; N is the corpus
+ * size. `log(1 + N/(1+df))` is the smoothed standard form: monotonically
+ * decreasing in df, always positive, ~0 extra weight for a token in every doc. */
+function computeIdf(docBags) {
+    const n = docBags.length;
+    const df = new Map();
+    for (const bag of docBags)
+        for (const t of bag)
+            df.set(t, (df.get(t) ?? 0) + 1);
+    const idf = new Map();
+    for (const [t, d] of df)
+        idf.set(t, Math.log(1 + n / (1 + d)));
+    return idf;
+}
+/** BM25 term score for a document field, used for the (potentially large) body
+ * field. Unlike raw term-frequency, BM25 saturates repeated occurrences (`k1`)
+ * and normalizes by document length (`b`, against the corpus-average length
+ * `avgdl`), so a big definition — a sprawling test class — can't outrank a
+ * tight, on-point function merely by containing more words. Standard params. */
+function bm25(query, doc, idf, dl, avgdl) {
+    const k1 = 1.2;
+    const b = 0.75;
+    const norm = k1 * (1 - b + (b * dl) / (avgdl || 1));
+    let s = 0;
+    for (const t of query.keys()) {
+        const tf = doc.get(t);
+        if (tf)
+            s += (idf.get(t) ?? 1) * ((tf * (k1 + 1)) / (tf + norm));
     }
     return s;
 }
@@ -158,15 +197,57 @@ function structural(query, graph, limit) {
     };
 }
 // ── Lexical rank ─────────────────────────────────────────────────────────────
-function lexical(query, corpus, limit) {
-    const q = counts(tokenize(query));
-    const scored = [];
-    for (const c of corpus.concepts) {
-        const nameScore = score(q, counts(tokenize(c.name))) * 3;
-        const bodyScore = score(q, counts(tokenize(c.text)));
-        const total = nameScore + bodyScore;
+/** How much a node's graph-centrality (0..1) can lift its blended score. A
+ * lexically-perfect node scores 1.0 on the lexical axis; a graph weight of 0.5
+ * lets connectivity reorder near-ties and separate a connected hit from an
+ * isolated same-word collision, without letting structure override a clear
+ * lexical winner. */
+const GRAPH_WEIGHT = 0.5;
+/** A node the query never word-matched is pulled into the results only if the
+ * walk gives it at least this share of the top node's mass — i.e. it is
+ * genuinely central to the matched cluster, not incidentally reachable. This is
+ * what surfaces the config/helper a task depends on but didn't name. */
+const RESCUE_FLOOR = 0.15;
+function lexical(query, corpus, limit, graphRank) {
+    // Binary query terms: a word repeated in a pasted issue body counts once, so a
+    // ranty description can't linearly amplify an incidental word.
+    const q = new Map([...counts(tokenize(query)).keys()].map((t) => [t, 1]));
+    const graph = corpus.graph;
+    // ── Pass 1: tokenize every scored field once, and collect per-document token
+    // bags so IDF can down-weight words that occur across the whole corpus. ──
+    const conceptDocs = corpus.concepts.map((c) => ({
+        c,
+        name: counts(tokenize(c.name)),
+        body: counts(tokenize(c.text)),
+    }));
+    // Symbols AND file nodes are scored: a symbol's body_text is its definition;
+    // a file's body_text is the module-level residual (imports/constants not in
+    // any symbol). Including files closes the recall gap where a gold file's only
+    // query-relevant text lives outside every function/class.
+    const symbolDocs = (graph?.nodes ?? []).map((n) => ({
+        n,
+        name: counts(tokenize(n.name)),
+        path: counts(tokenize(n.path)),
+        // The body (indexed at build) joins the signature + summary as the low-weight
+        // body field, so a term that appears only in the code — not the name/signature
+        // — still makes the node findable. IDF (from these same bags) keeps a word
+        // common across many bodies from dominating.
+        body: counts(tokenize(`${n.signature ?? ""} ${n.summary ?? ""} ${n.body_text ?? ""}`)),
+    }));
+    const docBags = [];
+    for (const d of conceptDocs)
+        docBags.push(new Set([...d.name.keys(), ...d.body.keys()]));
+    for (const d of symbolDocs)
+        docBags.push(new Set([...d.name.keys(), ...d.path.keys(), ...d.body.keys()]));
+    const idf = computeIdf(docBags);
+    // ── Concepts (prose nodes; not in the wiring graph) ──
+    const conceptHits = [];
+    let maxConcept = 0;
+    for (const { c, name, body } of conceptDocs) {
+        const total = score(q, name, idf) * 3 + score(q, body, idf);
         if (total > 0) {
-            scored.push({
+            maxConcept = Math.max(maxConcept, total);
+            conceptHits.push({
                 kind: "concept",
                 title: c.name || c.slug,
                 pointer: c.sources.join(", ") || c.slug,
@@ -176,23 +257,65 @@ function lexical(query, corpus, limit) {
             });
         }
     }
-    for (const n of corpus.graph?.nodes ?? []) {
-        if (n.kind === "file")
-            continue;
-        const nameScore = score(q, counts(tokenize(n.name))) * 3;
-        const pathScore = score(q, counts(tokenize(n.path))) * 2;
-        const bodyScore = score(q, counts(tokenize(`${n.signature ?? ""} ${n.summary ?? ""}`)));
-        const total = nameScore + pathScore + bodyScore;
+    // ── Symbols (wiring graph): lexical score per node, keyed by id ──
+    const byId = new Map((graph?.nodes ?? []).map((n) => [n.id, n]));
+    const bodyLen = (m) => {
+        let s = 0;
+        for (const v of m.values())
+            s += v;
+        return s;
+    };
+    const avgBodyLen = symbolDocs.length
+        ? symbolDocs.reduce((a, d) => a + bodyLen(d.body), 0) / symbolDocs.length
+        : 0;
+    const lex = new Map(); // node id → lexical score (>0 only)
+    let maxLex = 0;
+    for (const { n, name, path, body } of symbolDocs) {
+        // Name and path are short identifiers → plain idf-weighted overlap; the body
+        // is length-normalized via BM25 so long definitions don't win on bulk.
+        const total = score(q, name, idf) * 3 +
+            score(q, path, idf) * 2 +
+            bm25(q, body, idf, bodyLen(body), avgBodyLen);
         if (total > 0) {
-            scored.push({
-                kind: "symbol",
-                title: `${n.name} · ${n.kind}`,
-                pointer: `${n.path}:${n.span}`,
-                snippet: n.summary?.split("\n")[0].trim() ?? n.signature ?? "",
-                score: total,
-            });
+            lex.set(n.id, total);
+            maxLex = Math.max(maxLex, total);
         }
     }
+    // ── Graph-rank: let connectivity to the matched set reorder and rescue ──
+    const pr = graphRank && graph && lex.size > 0
+        ? personalizedPageRank(graph, lex)
+        : new Map();
+    // Candidate symbols = everything the query word-matched, plus nodes the walk
+    // found strongly central even without a word match (RESCUE_FLOOR).
+    const candidates = new Set(lex.keys());
+    for (const [id, p] of pr)
+        if (p >= RESCUE_FLOOR)
+            candidates.add(id);
+    const symbolHits = [];
+    for (const id of candidates) {
+        const n = byId.get(id);
+        if (!n)
+            continue;
+        const lexN = maxLex > 0 ? (lex.get(id) ?? 0) / maxLex : 0;
+        const blended = lexN + GRAPH_WEIGHT * (pr.get(id) ?? 0);
+        if (blended <= 0)
+            continue;
+        symbolHits.push({
+            kind: "symbol",
+            title: `${n.name} · ${n.kind}`,
+            // A file node points at the whole file (locator, no span) so `--source`
+            // never inlines an entire file; symbol nodes keep their exact span.
+            pointer: n.kind === "file" ? n.path : `${n.path}:${n.span}`,
+            snippet: n.summary?.split("\n")[0].trim() ?? n.signature ?? "",
+            score: blended,
+        });
+    }
+    // Concepts and symbols live on comparable 0..~1.5 scales so they merge fairly:
+    // concept scores are normalized to their own max, symbol scores are the
+    // lexical-normalized + graph-weighted blend.
+    for (const h of conceptHits)
+        h.score = maxConcept > 0 ? h.score / maxConcept : 0;
+    const scored = [...conceptHits, ...symbolHits];
     scored.sort((a, b) => b.score - a.score || a.title.localeCompare(b.title));
     return {
         query,
@@ -282,13 +405,14 @@ export function ask(dir, query, opts = {}) {
     const outDir = contextDirFor(root, opts.contextDir);
     const limit = opts.limit ?? 8;
     const corpus = loadCorpus(outDir);
+    const graphRank = opts.graphRank ?? true;
     let result;
     if (corpus.graph) {
         const s = structural(query, corpus.graph, limit);
-        result = s ?? lexical(query, corpus, limit);
+        result = s ?? lexical(query, corpus, limit, graphRank);
     }
     else {
-        result = lexical(query, corpus, limit);
+        result = lexical(query, corpus, limit, graphRank);
     }
     if (opts.source) {
         inlineSource(root, result.hits);

package/dist/ask/ask.js.map

@@ -1 +1 @@
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package/dist/ask/graphrank.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Graph-rank re-ranking for `graft ask` — the fix for lexical keyword-collision.
+ *
+ * Pure term-overlap ranking treats every node independently, so a node that
+ * merely shares a word with the query (a window "overlay" widget) can outrank
+ * the node the query is actually about (a scroll-"overlay" config) purely on
+ * word count. The graph knows better: the right node is the one wired into the
+ * cluster of code the query touches.
+ *
+ * This module runs personalized PageRank (random-walk-with-restart) over the
+ * wiring graph, seeded by the lexical scores. Mass concentrates on nodes that
+ * are edge-connected to the matched set; a lexically-matched but structurally
+ * isolated node keeps only its own restart mass and sinks. "Lexical proposes,
+ * graph disposes." Deterministic, $0, no embeddings — a lexical-seed →
+ * graph-rank pipeline, the established alternative to vector search for code.
+ */
+import type { GraphV1 } from "../graph/types.js";
+export interface PageRankOptions {
+    /** Restart probability — the mass that teleports back to the seed set each
+     * step. Higher keeps the walk closer to the seeds. 0.25 is the standard value. */
+    alpha?: number;
+    /** Power-iteration count. 25 is plenty to converge on graphs this size. */
+    iters?: number;
+}
+/**
+ * Personalized PageRank over the wiring graph.
+ *
+ * `seeds` maps node id → restart weight (a node's lexical score; only positive
+ * weights matter). The graph is treated as UNDIRECTED — for "understand this
+ * area" a callee is as relevant as a caller. Returns a score per node
+ * normalized so the top node is 1; nodes untouched by the walk are absent.
+ *
+ * Edges whose endpoints aren't both real nodes (e.g. an unresolved import
+ * module string) are ignored, so only genuine symbol-to-symbol wiring counts.
+ */
+export declare function personalizedPageRank(graph: GraphV1, seeds: Map<string, number>, opts?: PageRankOptions): Map<string, number>;
+//# sourceMappingURL=graphrank.d.ts.map

package/dist/ask/graphrank.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"graphrank.d.ts","sourceRoot":"","sources":["../../src/ask/graphrank.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AACH,OAAO,KAAK,EAAE,OAAO,EAAY,MAAM,mBAAmB,CAAC;AAgB3D,MAAM,WAAW,eAAe;IAC9B;sFACkF;IAClF,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,2EAA2E;IAC3E,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,oBAAoB,CAClC,KAAK,EAAE,OAAO,EACd,KAAK,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EAC1B,IAAI,GAAE,eAAoB,GACzB,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAqDrB"}

package/dist/ask/graphrank.js

@@ -0,0 +1,86 @@
+/**
+ * Edges that carry meaning-flow for the walk. `contains` is deliberately
+ * excluded: a file node contains every symbol defined in it, so walking it
+ * would make every same-file symbol a neighbour and let a file act as a hub
+ * that connects otherwise-unrelated code — the flooding a graph walk must avoid.
+ */
+const WALK_RELATIONS = new Set([
+    "calls",
+    "references",
+    "imports",
+    "implements",
+    "extends",
+]);
+/**
+ * Personalized PageRank over the wiring graph.
+ *
+ * `seeds` maps node id → restart weight (a node's lexical score; only positive
+ * weights matter). The graph is treated as UNDIRECTED — for "understand this
+ * area" a callee is as relevant as a caller. Returns a score per node
+ * normalized so the top node is 1; nodes untouched by the walk are absent.
+ *
+ * Edges whose endpoints aren't both real nodes (e.g. an unresolved import
+ * module string) are ignored, so only genuine symbol-to-symbol wiring counts.
+ */
+export function personalizedPageRank(graph, seeds, opts = {}) {
+    const alpha = opts.alpha ?? 0.25;
+    const iters = opts.iters ?? 25;
+    const ids = new Set(graph.nodes.map((n) => n.id));
+    // Undirected adjacency over walk relations, endpoints restricted to real nodes.
+    const adj = new Map();
+    const link = (a, b) => {
+        (adj.get(a) ?? adj.set(a, []).get(a)).push(b);
+    };
+    for (const e of graph.edges) {
+        if (!WALK_RELATIONS.has(e.relation))
+            continue;
+        if (!ids.has(e.source) || !ids.has(e.target))
+            continue;
+        link(e.source, e.target);
+        link(e.target, e.source);
+    }
+    // Restart distribution: seed weights, restricted to real nodes, normalized.
+    let seedTotal = 0;
+    for (const [id, w] of seeds)
+        if (ids.has(id) && w > 0)
+            seedTotal += w;
+    if (seedTotal <= 0)
+        return new Map();
+    const restart = new Map();
+    for (const [id, w] of seeds)
+        if (ids.has(id) && w > 0)
+            restart.set(id, w / seedTotal);
+    // Power iteration from the restart distribution.
+    let rank = new Map(restart);
+    for (let i = 0; i < iters; i++) {
+        const next = new Map();
+        // Teleport: every step, alpha of the mass returns to the seed set.
+        for (const [id, r] of restart)
+            next.set(id, alpha * r);
+        for (const [id, mass] of rank) {
+            const nbrs = adj.get(id);
+            if (!nbrs || nbrs.length === 0) {
+                // Dangling node: return its mass to the seed set (conserves probability
+                // and keeps it personalized — mass never escapes to the whole graph).
+                for (const [sid, r] of restart)
+                    next.set(sid, (next.get(sid) ?? 0) + (1 - alpha) * mass * r);
+                continue;
+            }
+            const share = ((1 - alpha) * mass) / nbrs.length;
+            for (const nb of nbrs)
+                next.set(nb, (next.get(nb) ?? 0) + share);
+        }
+        rank = next;
+    }
+    let max = 0;
+    for (const v of rank.values())
+        if (v > max)
+            max = v;
+    if (max <= 0)
+        return new Map();
+    const out = new Map();
+    for (const [id, v] of rank)
+        out.set(id, v / max);
+    return out;
+}
+//# sourceMappingURL=graphrank.js.map

package/dist/ask/graphrank.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"graphrank.js","sourceRoot":"","sources":["../../src/ask/graphrank.ts"],"names":[],"mappings":"AAkBA;;;;;GAKG;AACH,MAAM,cAAc,GAAG,IAAI,GAAG,CAAW;IACvC,OAAO;IACP,YAAY;IACZ,SAAS;IACT,YAAY;IACZ,SAAS;CACV,CAAC,CAAC;AAUH;;;;;;;;;;GAUG;AACH,MAAM,UAAU,oBAAoB,CAClC,KAAc,EACd,KAA0B,EAC1B,OAAwB,EAAE;IAE1B,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC;IACjC,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,IAAI,EAAE,CAAC;IAE/B,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAElD,gFAAgF;IAChF,MAAM,GAAG,GAAG,IAAI,GAAG,EAAoB,CAAC;IACxC,MAAM,IAAI,GAAG,CAAC,CAAS,EAAE,CAAS,EAAE,EAAE;QACpC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACjD,CAAC,CAAC;IACF,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,KAAK,EAAE,CAAC;QAC5B,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC;YAAE,SAAS;QAC9C,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC;YAAE,SAAS;QACvD,IAAI,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC;QACzB,IAAI,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC;IAC3B,CAAC;IAED,4EAA4E;IAC5E,IAAI,SAAS,GAAG,CAAC,CAAC;IAClB,KAAK,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,KAAK;QAAE,IAAI,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC;YAAE,SAAS,IAAI,CAAC,CAAC;IACtE,IAAI,SAAS,IAAI,CAAC;QAAE,OAAO,IAAI,GAAG,EAAE,CAAC;IACrC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,KAAK,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,KAAK;QACzB,IAAI,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC;YAAE,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,SAAS,CAAC,CAAC;IAE3D,iDAAiD;IACjD,IAAI,IAAI,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,CAAC;IAC5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,EAAE,EAAE,CAAC;QAC/B,MAAM,IAAI,GAAG,IAAI,GAAG,EAAkB,CAAC;QACvC,mEAAmE;QACnE,KAAK,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,OAAO;YAAE,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QACvD,KAAK,MAAM,CAAC,EAAE,EAAE,IAAI,CAAC,IAAI,IAAI,EAAE,CAAC;YAC9B,MAAM,IAAI,GAAG,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YACzB,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAC/B,wEAAwE;gBACxE,sEAAsE;gBACtE,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,OAAO;oBAC5B,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC;gBAC/D,SAAS;YACX,CAAC;YACD,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,GAAG,IAAI,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC;YACjD,KAAK,MAAM,EAAE,IAAI,IAAI;gBAAE,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC;QACnE,CAAC;QACD,IAAI,GAAG,IAAI,CAAC;IACd,CAAC;IAED,IAAI,GAAG,GAAG,CAAC,CAAC;IACZ,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,MAAM,EAAE;QAAE,IAAI,CAAC,GAAG,GAAG;YAAE,GAAG,GAAG,CAAC,CAAC;IACpD,IAAI,GAAG,IAAI,CAAC;QAAE,OAAO,IAAI,GAAG,EAAE,CAAC;IAC/B,MAAM,GAAG,GAAG,IAAI,GAAG,EAAkB,CAAC;IACtC,KAAK,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,IAAI;QAAE,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC;IACjD,OAAO,GAAG,CAAC;AACb,CAAC"}

package/dist/graph/extract.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"extract.d.ts","sourceRoot":"","sources":["../../src/graph/extract.ts"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAQ,MAAM,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAEzD,MAAM,MAAM,QAAQ,GAAG,YAAY,GAAG,KAAK,GAAG,QAAQ,CAAC;AAEvD,uEAAuE;AACvE,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAMxD;AAED;;;GAGG;AACH,MAAM,WAAW,OAAO;IACtB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,QAAQ,EAAE,OAAO,EAAE,CAAC;CACrB;AAkDD,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,GAAG,aAAa,CAkCtF"}
+{"version":3,"file":"extract.d.ts","sourceRoot":"","sources":["../../src/graph/extract.ts"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAQ,MAAM,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAEzD,MAAM,MAAM,QAAQ,GAAG,YAAY,GAAG,KAAK,GAAG,QAAQ,CAAC;AAEvD,uEAAuE;AACvE,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAMxD;AAED;;;GAGG;AACH,MAAM,WAAW,OAAO;IACtB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,QAAQ,EAAE,OAAO,EAAE,CAAC;CACrB;AAmGD,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,GAAG,aAAa,CAqCtF"}

package/dist/graph/extract.js

@@ -22,6 +22,45 @@ export function languageOf(path) {
         return "python";
     return null;
 }
+/** Max chars of normalized body stored per symbol for search. Large enough that
+ * essentially every real definition is stored whole — only a rare giant function
+ * is clipped — while bounding how much the committed graph can grow. */
+const MAX_BODY_CHARS = 5000;
+/** Cap for a file node's module-level residual (imports, constants, module
+ * docstring — everything not inside a symbol). Higher than the per-symbol cap
+ * because a data-heavy module (constant tables, big config dicts) is legitimate
+ * residual, and it's the recall play — but still bounded. */
+const MAX_FILE_BODY_CHARS = 16000;
+/** The searchable body of a definition: its source text, whitespace-collapsed
+ * so every identifier becomes a token, capped at `max`. Search-only — the agent
+ * still reads verbatim source via `ask --source`, which slices the file from
+ * disk, so nothing here reaches the agent's context. */
+function searchBody(text, max = MAX_BODY_CHARS) {
+    const norm = text.replace(/\s+/g, " ").trim();
+    return norm.length > max ? norm.slice(0, max) : norm;
+}
+/** A file's module-level residual: the lines NOT covered by any symbol span.
+ * Symbol bodies are already indexed on their own nodes, so this captures only
+ * what they miss — top-of-file imports, module constants, module docstrings —
+ * making a file findable by a term that lives outside every function/class.
+ * `symbols` are the file's emitted nodes (with `Lx-Ly` spans); `source` is the
+ * whole file. Far leaner than storing full-file bodies (no symbol duplication). */
+function fileResidual(source, symbols) {
+    const lines = source.split("\n");
+    const covered = new Uint8Array(lines.length + 2);
+    for (const s of symbols) {
+        const m = s.span.match(/^L(\d+)-L(\d+)$/);
+        if (!m)
+            continue;
+        for (let r = Number(m[1]); r <= Number(m[2]) && r < covered.length; r++)
+            covered[r] = 1;
+    }
+    const kept = [];
+    for (let i = 0; i < lines.length; i++)
+        if (!covered[i + 1])
+            kept.push(lines[i]);
+    return searchBody(kept.join(" "), MAX_FILE_BODY_CHARS);
+}
 const TS_KINDS = {
     class_declaration: "class",
     abstract_class_declaration: "class",
@@ -48,9 +87,18 @@ const GRAMMARS = {
     tsx: TypeScript.tsx,
     python: Python,
 };
+/** tree-sitter's string `parse()` fails with "Invalid argument" on any input
+ * ≥ 32 KB, which silently drops large files — often the most important ones (a
+ * 2000-line command module, a core tab implementation). The callback form has
+ * no such limit as long as each returned chunk is under 32 KB, so we always feed
+ * the source in <32 KB slices. Code-unit indexing matches `String.slice`. */
+const PARSE_CHUNK = 16384;
+function parseSource(source) {
+    return parser.parse((index) => source.slice(index, index + PARSE_CHUNK)).rootNode;
+}
 export function extractFile(rel, source, lang) {
     parser.setLanguage(GRAMMARS[lang]);
-    const root = parser.parse(source).rootNode;
+    const root = parseSource(source);
     const nodes = [
         {
             id: rel,
@@ -80,6 +128,9 @@ export function extractFile(rel, source, lang) {
     };
     for (const child of root.namedChildren)
         walk(child, ctx, nodes, rawEdges);
+    // nodes[0] is the file node; the rest are its symbols. Index the module-level
+    // residual on the file node so a term outside every symbol still surfaces it.
+    nodes[0].body_text = fileResidual(source, nodes.slice(1));
     return { nodes, rawEdges };
 }
 function walk(node, ctx, out, edges) {
@@ -96,6 +147,7 @@ function walk(node, ctx, out, edges) {
             exported: ctx.lang === "python" ? !desc.name.startsWith("_") : tsExported(node),
             origin: "ast",
             body_hash: contentHash(desc.hashNode.text),
+            body_text: searchBody(desc.hashNode.text),
             summary_state: "pending",
             summary: null,
             crux: null,

package/dist/graph/extract.js.map

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package/dist/graph/types.d.ts

@@ -33,6 +33,7 @@ export interface NodeV1 {
     origin: "ast";
     body_hash: string;
     chars?: number;
+    body_text?: string;
     summary_state: SummaryState;
     summary: string | null;
     crux: Crux | null;

package/dist/graph/types.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nanonets/graft",
-  "version": "0.3.2",
+  "version": "0.4.0",
   "description": "Build a repo's context graph as a folder of linked markdown files that live in the repo and stay in sync with the code through git.",
   "keywords": [
     "ai",