@nanonets/graft 0.19.0 → 0.20.0

package/dist/brain/push.js

@@ -104,7 +104,12 @@ export async function fetchExpectedRepo(link, fetchImpl = fetch) {
         const body = (await res.json());
         if (!body.repo?.slug)
             return null;
-        return { slug: body.repo.slug, status: String(body.repo.status ?? ""), brainName: String(body.brain_name ?? "") };
+        return {
+            slug: body.repo.slug,
+            status: String(body.repo.status ?? ""),
+            brainName: String(body.brain_name ?? ""),
+            earlyUpload: body.early_upload === true,
+        };
     }
     catch {
         return null;
@@ -114,6 +119,78 @@ export async function fetchExpectedRepo(link, fetchImpl = fetch) {
 export function sameRepo(a, b) {
     return a.trim().toLowerCase() === b.trim().toLowerCase();
 }
+/** How many of the newest pull requests and commits the early upload carries —
+ * what Trail's quick CLAUDE.md pass reads, and no more. */
+export const EARLY_THREADS = 30;
+export const EARLY_COMMITS = 80;
+/**
+ * The early upload: the instruction files, the newest pull requests and the
+ * newest commits, read before the rest of the history.
+ *
+ * Reading the history is most of a push's wait — up to 200 pull requests at two
+ * GitHub calls each — and Trail's first CLAUDE.md suggestions need none of it
+ * beyond the newest few. Sent first, they start while the full read is still
+ * going here, and the full upload that follows mines as before.
+ *
+ * Returns the threads it read, so the full read reuses them instead of asking
+ * GitHub twice. Null when there is nothing worth sending early.
+ */
+export async function buildEarlyDigest(root, opts = {}) {
+    const slug = repoSlugFromGit(root);
+    if (!slug)
+        return null;
+    const fetchImpl = opts.fetchImpl ?? fetch;
+    const token = githubToken();
+    // Oldest first, like the full read, so the newest are the tail.
+    const commits = readCommits(root).slice(-EARLY_COMMITS);
+    if (commits.length === 0)
+        return null;
+    let threads = [];
+    if (token) {
+        try {
+            threads = await readThreads(slug.owner, slug.name, token, fetchImpl, undefined, EARLY_THREADS);
+        }
+        catch {
+            threads = [];
+        }
+    }
+    const digest = buildDigest({
+        owner: slug.owner,
+        name: slug.name,
+        headSha: git(root, ["rev-parse", "HEAD"]) ?? "",
+        defaultBranch: currentBranch(root),
+        isPrivate: await isPrivate(slug.owner, slug.name, token, fetchImpl),
+        commits,
+        threads,
+        symbols: [],
+        sources: budgetSources(readAgentInstructions(root)),
+        autoApprove: true,
+    });
+    return { digest, threads };
+}
+/** Send the early upload. Best-effort: false on any failure, and the full
+ * upload still does everything. */
+export async function pushEarlyDigest(link, digest, fetchImpl = fetch) {
+    const url = `${baseUrlFor(link)}/api/public/brains/${encodeURIComponent(link.brainId)}/repo?stage=early`;
+    try {
+        const res = await fetchImpl(url, {
+            method: "POST",
+            headers: {
+                authorization: `Bearer ${link.token}`,
+                "content-type": "application/json",
+                accept: "application/json",
+            },
+            body: JSON.stringify(digest),
+            signal: AbortSignal.timeout(15_000),
+        });
+        if (!res.ok)
+            return false;
+        return (await res.json()).early === true;
+    }
+    catch {
+        return false;
+    }
+}
 /** Build the digest for the checkout at `root`. Reads nothing but text. */
 export async function buildLocalDigest(root, graph, opts = {}) {
     const slug = repoSlugFromGit(root);
@@ -131,7 +208,8 @@ export async function buildLocalDigest(root, graph, opts = {}) {
     let warning;
     if (token) {
         try {
-            threads = await readThreads(slug.owner, slug.name, token, fetchImpl);
+            const known = new Map((opts.knownThreads ?? []).map((t) => [t.number, t]));
+            threads = await readThreads(slug.owner, slug.name, token, fetchImpl, undefined, undefined, known);
         }
         catch {
             warning = "could not read pull-request discussion; mining commits and repo files only";

package/dist/brain/push.js.map

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package/dist/brain/signup.js

@@ -2,12 +2,12 @@
  * Getting a brain without leaving the terminal.
  *
  * Until now a brain could only begin in the browser. You signed up on Trail, it
- * created the brain, and handed you a `graft init --brain <id>:<token>` line to
+ * created the brain, and handed you a `graft init --trail <id>:<token>` line to
  * paste. That is the right way round when the website is where you already are,
  * and the wrong way round when you are standing in a repository with graft
  * already installed — which is where most people meet graft first.
  *
- * So `graft brain push` on an unlinked repo starts here instead of stopping.
+ * So `graft trail push` on an unlinked repo starts here instead of stopping.
  * Graft opens a listener on loopback, sends the browser to Trail carrying the
  * repository it is standing in and the port to answer on, and waits. Trail does
  * the signing up, makes a brain for that repository, and redirects back to the
@@ -48,7 +48,7 @@ function sameState(got, want) {
 function donePage(ok) {
     const msg = ok
         ? "Your brain is connected. Return to your terminal — the push is already running."
-        : "That handoff did not match this terminal. Run `graft brain push` again.";
+        : "That handoff did not match this terminal. Run `graft trail push` again.";
     return `<!doctype html><meta charset="utf-8"><title>graft</title><body style="font:15px/1.5 system-ui,sans-serif;margin:3rem auto;max-width:32rem;color:#1F2129"><p>${msg}</p><p style="color:#676767">You can close this tab.</p>`;
 }
 /**
@@ -117,7 +117,7 @@ export async function startHandoff() {
         async wait(timeoutMs = HANDOFF_TIMEOUT_MS) {
             let timer;
             const timeout = new Promise((resolve) => {
-                timer = setTimeout(() => resolve({ error: "timed out waiting for the browser — run `graft brain push` again, or use the link above", reason: "timed_out" }), timeoutMs);
+                timer = setTimeout(() => resolve({ error: "timed out waiting for the browser — run `graft trail push` again, or use the link above", reason: "timed_out" }), timeoutMs);
                 // The timer must not hold the process open once the browser has answered.
                 timer.unref?.();
             });

package/dist/brain/watch.d.ts

@@ -1,7 +1,7 @@
 /**
  * Watching a brain being built, from the terminal.
  *
- * `graft brain push` used to end at "it is being mined into rules now — a few
+ * `graft trail push` used to end at "it is being mined into rules now — a few
  * minutes. Watch it finish in your browser." and hand the prompt straight back.
  * That sentence is the last thing this process ever says about the work, and it
  * is said BEFORE the part that actually fails: of the repo brains attempted in

package/dist/claude/init.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/claude/init.ts"],"names":[],"mappings":"AAIA,OAAO,EAAuB,KAAK,WAAW,EAAE,MAAM,2BAA2B,CAAC;AAKlF,OAAO,EAA6B,KAAK,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAElF,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAErD;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG,YAAY,EAAE,CAWzD;AAED;;;;;GAKG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,OAAO,CAarG;AAED,MAAM,WAAW,UAAU;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,8EAA8E;IAC9E,GAAG,EAAE,QAAQ,CAAC;IACd,2EAA2E;IAC3E,MAAM,EAAE,WAAW,EAAE,CAAC;IACtB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,KAAK,EAAE,OAAO,CAAC;CAChB;AAED,wBAAgB,OAAO,CACrB,GAAG,EAAE,MAAM,EACX,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAC;IAAC,UAAU,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAA;CAAO,GACtG,UAAU,CAsCZ"}

package/dist/claude/init.js

@@ -38,7 +38,9 @@ export function buildGraphIfMissing(dir, opts) {
     if (opts.build === false || !opts.cliPath || hasGraftIndex(dir))
         return false;
     try {
-        execFileSync(process.execPath, [opts.cliPath, 'build', '.'], { cwd: dir, stdio: 'inherit', timeout: 300000 });
+        // execArgv carries the loader graft itself was started with (tsx, when run
+        // from source), so the child can run a .ts entry point too.
+        execFileSync(process.execPath, [...process.execArgv, opts.cliPath, 'build', '.'], { cwd: dir, stdio: 'inherit', timeout: 300000 });
         return true;
     }
     catch {

package/dist/claude/init.js.map

@@ -1 +1 @@
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+{"version":3,"file":"init.js","sourceRoot":"","sources":["../../src/claude/init.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,aAAa,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AAC5E,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAClC,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,mBAAmB,EAAoB,MAAM,2BAA2B,CAAC;AAClF,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAC3C,OAAO,EAAE,YAAY,EAAE,WAAW,EAAiB,MAAM,wBAAwB,CAAC;AAClF,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAGjD;;;;GAIG;AACH,MAAM,UAAU,aAAa,CAAC,GAAW;IACvC,MAAM,CAAC,GAAG,CAAC,IAAY,EAAE,IAAY,EAAE,OAA6B,QAAQ,EAAgB,EAAE,CAC5F,CAAC,EAAE,MAAM,EAAE,QAAQ,EAAE,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;IACxE,OAAO;QACL,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,eAAe,CAAC,EAAE,gCAAgC,CAAC;QAC1E,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,SAAS,EAAE,sBAAsB,CAAC,EAAE,iBAAiB,CAAC;QAC7E,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,SAAS,EAAE,iBAAiB,CAAC,EAAE,YAAY,CAAC;QACnE,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,CAAC,EAAE,aAAa,CAAC;QACrE,yEAAyE;QACzE,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,WAAW,CAAC,EAAE,kBAAkB,EAAE,KAAK,CAAC;KACrD,CAAC;AACJ,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,mBAAmB,CAAC,GAAW,EAAE,IAA2C;IAC1F,2EAA2E;IAC3E,4EAA4E;IAC5E,oEAAoE;IACpE,IAAI,IAAI,CAAC,KAAK,KAAK,KAAK,IAAI,CAAC,IAAI,CAAC,OAAO,IAAI,aAAa,CAAC,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IAC9E,IAAI,CAAC;QACH,2EAA2E;QAC3E,4DAA4D;QAC5D,YAAY,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC,GAAG,OAAO,CAAC,QAAQ,EAAE,IAAI,CAAC,OAAO,EAAE,OAAO,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,SAAS,EAAE,OAAO,EAAE,MAAM,EAAE,CAAC,CAAC;QACnI,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAcD,MAAM,UAAU,OAAO,CACrB,GAAW,EACX,OAAqG,EAAE;IAEvG,6EAA6E;IAC7E,MAAM,CAAC,QAAQ,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,CAAC,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IAE9F,SAAS,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEpD,MAAM,YAAY,GAAG,QAAQ,CAAC;IAC9B,IAAI,QAAQ,GAAwB,EAAE,CAAC;IACvC,IAAI,CAAC;QAAC,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,YAAY,EAAE,MAAM,CAAC,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAC,gCAAgC,CAAC,CAAC;IAC7G,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,kBAAkB,CAAC,QAAQ,EAAE,EAAE,UAAU,EAAE,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC;IAC3F,aAAa,CAAC,YAAY,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;IAEpE,MAAM,EAAE,GAAG,UAAU,CAAC;IACtB,MAAM,EAAE,GAAG,KAAK,CAAC;IACjB,MAAM,QAAQ,GAAG,aAAa,EAAE,CAAC,CAAC,kEAAkE;IACpG,aAAa,CAAC,EAAE,EAAE,cAAc,CAAC,QAAQ,CAAC,CAAC,CAAC;IAAC,SAAS,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IAClE,aAAa,CAAC,EAAE,EAAE,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC;IAAC,SAAS,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IAE7D,mFAAmF;IACnF,mFAAmF;IACnF,MAAM,SAAS,GAAG,KAAK,CAAC;IACxB,SAAS,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACnD,aAAa,CAAC,SAAS,EAAE,aAAa,EAAE,CAAC,CAAC;IAE1C,0EAA0E;IAC1E,qFAAqF;IACrF,2EAA2E;IAC3E,MAAM,GAAG,GAAG,YAAY,CAAC,QAAQ,EAAE,SAAS,EAAE,YAAY,EAAE,WAAW,EAAE,CAAC,CAAC;IAE3E,+EAA+E;IAC/E,gFAAgF;IAChF,8EAA8E;IAC9E,gFAAgF;IAChF,cAAc;IACd,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,mBAAmB,CAAC,IAAI,CAAC,IAAI,IAAI,OAAO,EAAE,CAAC,CAAC;IAExF,MAAM,KAAK,GAAG,mBAAmB,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IAC7C,OAAO,EAAE,YAAY,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAC;AAC3F,CAAC"}

package/dist/cli.js

@@ -19,8 +19,10 @@ import { hostIds } from "./hosts/registry.js";
 import { parseBrainArg, connectBrain, pullBrain, brainStatus } from "./brain/connect.js";
 import { rulesForPointers } from "./brain/attach.js";
 import { clearLink } from "./brain/link.js";
-import { buildLocalDigest, fetchExpectedRepo, pushDigest, repoSlugFromGit, sameRepo } from "./brain/push.js";
+import { buildEarlyDigest, buildLocalDigest, fetchExpectedRepo, pushDigest, pushEarlyDigest, repoSlugFromGit, sameRepo, } from "./brain/push.js";
 import { readLink, writeLink } from "./brain/link.js";
+import { withLegacyNames } from "./legacy-args.js";
+import { applyChanges, fetchAcceptedChanges, markApplied } from "./brain/claude-md.js";
 import { watchBuild } from "./brain/watch.js";
 import { openBrowser, signupUrl, startHandoff } from "./brain/signup.js";
 import { contextDirFor } from "./context/node-file.js";
@@ -41,7 +43,7 @@ import { patchBuildConfig } from "./util/state.js";
 import { normalizePathPrefix } from "./util/paths.js";
 import { latestSession, formatSessionStats, sessionInputRate } from "./claude/session-metrics.js";
 import { setInputRate } from "./context/savings.js";
-import { formatUpdateNudge, maybeRefreshInBackground, readUpdateCache, refreshUpdateCache, writeStamp } from "./upkeep.js";
+import { formatUpdateNudge, maybeRefreshInBackground, readUpdateCache, refreshUpdateCache, wiredHostIds, writeStamp } from "./upkeep.js";
 import { errorCode, filesBucket, durationBucket, formatDebug, formatStatus, firstRunNotice, isTrackedCommand, langsValue, offReason, maybeFlushInBackground, patchState, runFlush, track, trackFirstRunIfNew, } from "./telemetry/index.js";
 const program = new Command();
 const currentVersion = readCurrentVersion(import.meta.url);
@@ -817,8 +819,15 @@ program
     .option("--dry-run", "print every file init would touch, then exit without writing")
     .option("-y, --yes", "skip the picker and wire every detected agent (the pre-0.8 default)")
     .option("--no-global", "skip writes outside this repo (the ~/.codex/ config + hooks)")
-    .option("--brain <handoff>", "attach a Trail brain: <brainId>:<token> (or a bare brain id with GRAFT_BRAIN_TOKEN set)")
-    .action(async (dir, opts) => {
+    .option("--trail <handoff>", "attach a Trail: <brainId>:<token> (or a bare id with GRAFT_BRAIN_TOKEN set)")
+    .action((dir, opts) => runInitCommand(dir, opts));
+/**
+ * `graft init`. Also run by `graft trail push` on a repo graft has not been set
+ * up in — the Trail pages start people at push, and a trail whose rules no
+ * coding agent reads is only half set up. `epilogue: false` leaves out the
+ * closing banner when push is going to keep talking.
+ */
+async function runInitCommand(dir, opts, how = {}) {
     if (opts.listAgents) {
         for (const id of [...hostIds(), "claude"])
             console.log(id);
@@ -827,10 +836,10 @@ program
     // Parsed before anything is written: a mistyped handoff should cost the user
     // an error, not a half-wired repo they have to `graft uninstall` out of.
     let brainLink;
-    if (opts.brain) {
-        const parsed = parseBrainArg(opts.brain);
+    if (opts.trail) {
+        const parsed = parseBrainArg(opts.trail);
         if ("error" in parsed) {
-            console.error(`✗ --brain: ${parsed.error}`);
+            console.error(`✗ --trail: ${parsed.error}`);
             process.exitCode = 1;
             return;
         }
@@ -919,7 +928,7 @@ program
         wireTarget(target, ids, { home, cliPath, plan, opts, wantClaude });
     }
     // The brain comes last, after the graph exists: its rules are anchored to
-    // symbols, and `graft brain status` can only report how many of them resolve
+    // symbols, and `graft trail status` can only report how many of them resolve
     // once there is a graph to resolve them against.
     if (brainLink) {
         const res = await connectBrain(repo, brainLink, { home, ids });
@@ -938,15 +947,16 @@ program
     const graphs = (children.length ? children.map((c) => join(repo, c)) : [repo])
         .map((d) => loadGraphCached(contextDirFor(d, children.length ? undefined : globalDir)))
         .filter((g) => g !== null);
-    console.error("\n" +
-        formatInitEpilogue({
-            graphBuilt: graphs.length > 0,
-            nodes: graphs.reduce((n, g) => n + g.meta.nodeCount, 0),
-            edges: graphs.reduce((n, g) => n + g.meta.edgeCount, 0),
-        }));
+    if (how.epilogue !== false)
+        console.error("\n" +
+            formatInitEpilogue({
+                graphBuilt: graphs.length > 0,
+                nodes: graphs.reduce((n, g) => n + g.meta.nodeCount, 0),
+                edges: graphs.reduce((n, g) => n + g.meta.edgeCount, 0),
+            }));
     // Sorted so `claude,cursor` and `cursor,claude` aggregate as one value.
     track("init_completed", { agents: [...ids].sort().join(","), consent: consent === undefined ? "unasked" : String(consent) }, { repo });
-});
+}
 /** One repo's worth of `init` writes — the parent, then each workspace child. */
 function wireTarget(repo, ids, ctx) {
     const { home, cliPath, plan, wantClaude, opts } = ctx;
@@ -1078,9 +1088,10 @@ program
         ? `\n⚠ ${bad.length} file(s) could not be parsed and were left as-is — see above.`
         : "\n✓ graft fully removed. `graft init` re-wires from scratch.");
 });
+// `graft trail …` still works: see legacy-args.ts.
 const brain = program
-    .command("brain")
-    .description("The Trail brain attached to this repo: the rules mined from its own history");
+    .command("trail")
+    .description("The Trail attached to this repo: the rules mined from its own history");
 /**
  * Get this repo a brain from the terminal, by sending the user through signup
  * in their browser and catching the handoff on loopback.
@@ -1106,7 +1117,7 @@ async function signUpForBrain(repo, slug) {
     // A non-interactive shell has nobody to click anything, so waiting five
     // minutes for a browser that will never come is worse than saying so now.
     if (!process.stderr.isTTY) {
-        console.error("· not a terminal — open that link, then run `graft brain connect <brainId>:<token>` here");
+        console.error("· not a terminal — open that link, then run `graft trail connect <brainId>:<token>` here");
         // Its own outcome, not a timeout: nothing here could have opened a browser,
         // so folding the two together would read as people abandoning signup when
         // it is only a remote shell doing what it has to.
@@ -1151,7 +1162,7 @@ brain
         // read the repo yet. Saying "0 rules" without saying why reads as a
         // failure, and the next step is the whole point.
         console.error("✓ attached this repo to the brain — it has no rules yet");
-        console.error("· run `graft brain push` to read this repository into it");
+        console.error("· run `graft trail push` to read this repository into it");
         return;
     }
     console.error(`✓ pulled ${res.ruleCount} rule(s) from ${parsed.brainId}`);
@@ -1166,7 +1177,7 @@ brain
     const repo = resolve(dir);
     const res = await pullBrain(repo, { home: homedir() });
     if (!res) {
-        console.error("· no brain attached — run `graft brain connect <brainId>:<token>`");
+        console.error("· no brain attached — run `graft trail connect <brainId>:<token>`");
         return;
     }
     if (res.warning) {
@@ -1216,16 +1227,48 @@ brain
         process.exitCode = 1;
         return;
     }
+    const label = expected?.slug ?? (here ? `${here.owner}/${here.name}` : "this repository");
+    console.error(`· reading ${label} — commit messages, pull-request discussion and the docs in the tree.`);
+    console.error("  No file contents leave this machine.");
+    // The instruction file and the newest pull requests go first, when the brain
+    // takes them: its CLAUDE.md suggestions start from those while the rest of
+    // the history is still being read here. Not awaited — the full read starts
+    // at once, reusing the threads the early one already fetched.
+    let early = Promise.resolve();
+    let knownThreads = [];
+    if (expected?.earlyUpload) {
+        const first = await buildEarlyDigest(repo);
+        if (first) {
+            knownThreads = first.threads;
+            early = pushEarlyDigest(link, first.digest).then((ok) => {
+                if (ok)
+                    console.error("· CLAUDE.md suggestions are on their way in your browser, from the newest pull requests");
+            });
+        }
+    }
+    // A repo graft was never set up in gets `graft init` first — after the early
+    // upload has gone, so the CLAUDE.md suggestions are not held up by the graph
+    // build. Same picker as init: it is how someone agrees to what gets written,
+    // so a non-interactive push only says what to run.
+    if (wiredHostIds(repo).length === 0) {
+        if (process.stdin.isTTY && process.stderr.isTTY) {
+            // Its one line of output lands before the picker, not across it.
+            await early;
+            console.error("· graft is not set up in this repo yet — setting it up first, the same as `graft init`");
+            await runInitCommand(repo, { build: true, mcp: true, hooks: true, statusline: true, global: true }, { epilogue: false });
+        }
+        else {
+            console.error("· graft is not set up in this repo — run `graft init` so your coding agent reads these rules");
+        }
+    }
     // The graph is what symbol anchors are resolved against, so a rule mined
     // here can later go stale on its own. Without one the ingest still works;
     // its rules simply govern the repo rather than a symbol in it.
     const graph = loadGraphCached(contextDirFor(repo, program.opts().dir));
     if (!graph)
         console.error("· no graph yet — run `graft build` first so rules can be anchored to symbols");
-    const label = expected?.slug ?? (here ? `${here.owner}/${here.name}` : "this repository");
-    console.error(`· reading ${label} — commit messages, pull-request discussion and the docs in the tree.`);
-    console.error("  No file contents leave this machine.");
-    const built = await buildLocalDigest(repo, graph, { autoApprove: opts.approve !== false });
+    const built = await buildLocalDigest(repo, graph, { autoApprove: opts.approve !== false, knownThreads });
+    await early;
     if ("error" in built) {
         console.error(`✗ ${built.error}`);
         process.exitCode = 1;
@@ -1274,7 +1317,7 @@ brain
         // A non-zero exit, unlike every other ending here: this is the one case
         // where the work did not produce a brain, and a CI step that ran the push
         // should hear about it the way it hears about any other failure.
-        console.error("  Nothing was lost — the brain is still there. Run `graft brain push` again to retry the read.");
+        console.error("  Nothing was lost — the brain is still there. Run `graft trail push` again to retry the read.");
         process.exitCode = 1;
         return;
     }
@@ -1284,6 +1327,66 @@ brain
     }
     console.error("· still building after 15 minutes — it has not failed, it is just long. Watch it finish in your browser.");
 });
+const claudeMd = program
+    .command("claude-md")
+    .description("The CLAUDE.md changes this repo's brain suggested and you accepted in Trail");
+claudeMd
+    .command("pull")
+    .description("Write the CLAUDE.md changes you accepted in Trail into this repo's instruction file")
+    .argument("[dir]", "target repo directory", ".")
+    .option("--dry-run", "show what would change without writing the file or telling Trail")
+    .action(async (dir, opts) => {
+    const repo = resolve(dir);
+    const link = readLink(repo);
+    if (!link) {
+        console.error("✗ this repo has no brain attached — run `graft trail push` first");
+        process.exitCode = 1;
+        return;
+    }
+    const pulled = await fetchAcceptedChanges(link);
+    if ("error" in pulled) {
+        console.error(`✗ ${pulled.error}`);
+        process.exitCode = 1;
+        return;
+    }
+    if (pulled.changes.length === 0) {
+        console.error("· nothing accepted yet — accept suggestions on the brain's CLAUDE.md page, then pull again");
+        return;
+    }
+    // The file Trail read, or a new CLAUDE.md when the repo had none.
+    const rel = pulled.path || "CLAUDE.md";
+    const file = join(repo, rel);
+    const { existsSync, readFileSync, writeFileSync } = await import("node:fs");
+    const before = existsSync(file) ? readFileSync(file, "utf8") : "";
+    const result = applyChanges(before, pulled.changes);
+    for (const c of result.written)
+        console.error(`  + ${c.kind === "add" ? "new section" : "edit"} · ${c.heading}`);
+    for (const c of result.present)
+        console.error(`  = already in the file · ${c.heading}`);
+    for (const s of result.skipped)
+        console.error(`  ! skipped · ${s.change.heading} — ${s.why}`);
+    if (opts.dryRun) {
+        console.error(`· dry run: ${result.written.length} change(s) would be written to ${rel}; nothing was written`);
+        return;
+    }
+    if (result.written.length > 0)
+        writeFileSync(file, result.text);
+    // Written now or already there: either way the page should stop listing it.
+    const done = [...result.written, ...result.present].map((c) => c.id);
+    const told = await markApplied(link, done);
+    if (result.written.length > 0) {
+        console.error(`✓ wrote ${result.written.length} change(s) to ${rel} — review and commit it like any other edit`);
+    }
+    else if (result.present.length > 0) {
+        console.error(`✓ ${rel} already has every accepted change`);
+    }
+    if (!told)
+        console.error("⚠ could not tell Trail which changes were written; the page may still list them");
+    if (result.skipped.length > 0) {
+        console.error(`· ${result.skipped.length} change(s) no longer match the local file — edit them on the CLAUDE.md page, or apply them by hand`);
+        process.exitCode = 1;
+    }
+});
 brain
     .command("status")
     .description("Show the attached brain, how many rules are cached, and how many still match the code")
@@ -1303,7 +1406,7 @@ brain
         return;
     }
     if (!link) {
-        console.error("· no brain attached — run `graft brain connect <brainId>:<token>`");
+        console.error("· no brain attached — run `graft trail connect <brainId>:<token>`");
         return;
     }
     console.error(`brain ${link.brainId}`);
@@ -1329,7 +1432,7 @@ brain
     clearLink(resolve(dir));
     console.error(`✓ detached the brain from ${repo}`);
 });
-program.parseAsync().catch((err) => {
+program.parseAsync(withLegacyNames(process.argv)).catch((err) => {
     console.error(err instanceof Error ? err.message : err);
     process.exit(1);
 });