@nanonets/graft 0.12.1 → 0.15.0

package/dist/graph/scopes.js.map

@@ -1 +1 @@
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package/dist/graph/source-files.d.ts

@@ -15,7 +15,12 @@ export declare function unsupportedExtensions(exts: string[]): string[];
  * none of which ever see a CLI flag) behaves identically to the build that
  * saved those choices.
  */
-export declare function listSourceFiles(root: string, outDir: string, repoFiles?: string[]): string[];
+/** Keep only files whose repo-relative path is at or under one of `onlyDirs`.
+ * No-op when `onlyDirs` is empty/absent. The whitelist is carried in the graph
+ * itself (the fingerprint records it at build time), never in the source repo,
+ * so a build and the query-path freshness probe read the identical set. */
+export declare function filterByOnlyDirs(files: string[], root: string, onlyDirs?: ReadonlySet<string>): string[];
+export declare function listSourceFiles(root: string, outDir: string, repoFiles?: string[], onlyDirs?: ReadonlySet<string>): string[];
 export interface SourceStat {
     /** Absolute path. */
     abs: string;
@@ -31,5 +36,5 @@ export interface SourceStat {
  * both the freshness probe and the extraction cache. Files that vanish between
  * the walk and the stat are dropped (same fail-soft posture as `walkDir`).
  */
-export declare function listSourceStats(root: string, outDir: string, repoFiles?: string[]): SourceStat[];
+export declare function listSourceStats(root: string, outDir: string, repoFiles?: string[], onlyDirs?: ReadonlySet<string>): SourceStat[];
 //# sourceMappingURL=source-files.d.ts.map

package/dist/graph/source-files.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"source-files.d.ts","sourceRoot":"","sources":["../../src/graph/source-files.ts"],"names":[],"mappings":"AAiBA;mFACmF;AACnF,wBAAgB,mBAAmB,IAAI,MAAM,EAAE,CAE9C;AAQD;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAG9D;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,MAAM,EACd,SAAS,GAAE,MAAM,EAEf,GACD,MAAM,EAAE,CASV;AAED,MAAM,WAAW,UAAU;IACzB,qBAAqB;IACrB,GAAG,EAAE,MAAM,CAAC;IACZ;;oEAEgE;IAChE,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,GAAG,UAAU,EAAE,CAYhG"}
+{"version":3,"file":"source-files.d.ts","sourceRoot":"","sources":["../../src/graph/source-files.ts"],"names":[],"mappings":"AAiBA;mFACmF;AACnF,wBAAgB,mBAAmB,IAAI,MAAM,EAAE,CAE9C;AAQD;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAG9D;AAED;;;;;;;GAOG;AACH;;;2EAG2E;AAC3E,wBAAgB,gBAAgB,CAC9B,KAAK,EAAE,MAAM,EAAE,EACf,IAAI,EAAE,MAAM,EACZ,QAAQ,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,GAC7B,MAAM,EAAE,CAMV;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,MAAM,EACd,SAAS,GAAE,MAAM,EAGf,EACF,QAAQ,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,GAC7B,MAAM,EAAE,CAaV;AAED,MAAM,WAAW,UAAU;IACzB,qBAAqB;IACrB,GAAG,EAAE,MAAM,CAAC;IACZ;;oEAEgE;IAChE,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,MAAM,EACd,SAAS,CAAC,EAAE,MAAM,EAAE,EACpB,QAAQ,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,GAC7B,UAAU,EAAE,CAYd"}

package/dist/graph/source-files.js

@@ -10,7 +10,7 @@ import { statSync } from "node:fs";
 import { resolve } from "node:path";
 import { walkDir } from "../ingest/fs.js";
 import { relPosix } from "../util/paths.js";
-import { readFollowSubmodules, readIncludeDirs } from "../util/state.js";
+import { readFollowNestedRepos, readFollowSubmodules, readIncludeDirs } from "../util/state.js";
 import { languageOf, depthExtensions } from "./extract.js";
 import { genericLangOf, genericExtensions } from "./generic.js";
 import { containerLangOf, containerExtensions } from "./container.js";
@@ -41,23 +41,36 @@ export function unsupportedExtensions(exts) {
  * none of which ever see a CLI flag) behaves identically to the build that
  * saved those choices.
  */
+/** Keep only files whose repo-relative path is at or under one of `onlyDirs`.
+ * No-op when `onlyDirs` is empty/absent. The whitelist is carried in the graph
+ * itself (the fingerprint records it at build time), never in the source repo,
+ * so a build and the query-path freshness probe read the identical set. */
+export function filterByOnlyDirs(files, root, onlyDirs) {
+    if (!onlyDirs || onlyDirs.size === 0)
+        return files;
+    return files.filter((abs) => {
+        const rel = relPosix(root, abs);
+        return [...onlyDirs].some((d) => rel === d || rel.startsWith(`${d}/`));
+    });
+}
 export function listSourceFiles(root, outDir, repoFiles = walkDir(root, readIncludeDirs(resolve(root)), {
     followSubmodules: readFollowSubmodules(resolve(root)),
-})) {
+    followNestedRepos: readFollowNestedRepos(resolve(root)),
+}), onlyDirs) {
     // A file is a source file if a depth-tier grammar (languageOf), a breadth-tier
     // grammar (genericLangOf) or a container (containerLangOf) claims its extension.
     // All three must agree here or `build` and `check` would enumerate different sets.
-    return repoFiles.filter((f) => !f.startsWith(outDir) &&
-        (languageOf(f) !== null || genericLangOf(f) !== null || containerLangOf(f) !== null));
+    return filterByOnlyDirs(repoFiles.filter((f) => !f.startsWith(outDir) &&
+        (languageOf(f) !== null || genericLangOf(f) !== null || containerLangOf(f) !== null)), root, onlyDirs);
 }
 /**
  * {@link listSourceFiles} plus each file's `(size, mtimeMs)` — the currency of
  * both the freshness probe and the extraction cache. Files that vanish between
  * the walk and the stat are dropped (same fail-soft posture as `walkDir`).
  */
-export function listSourceStats(root, outDir, repoFiles) {
+export function listSourceStats(root, outDir, repoFiles, onlyDirs) {
     const out = [];
-    for (const abs of listSourceFiles(root, outDir, repoFiles)) {
+    for (const abs of listSourceFiles(root, outDir, repoFiles, onlyDirs)) {
         let s;
         try {
             s = statSync(abs);

package/dist/graph/source-files.js.map

@@ -1 +1 @@
-{"version":3,"file":"source-files.js","sourceRoot":"","sources":["../../src/graph/source-files.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AACH,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACnC,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAC5C,OAAO,EAAE,oBAAoB,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACzE,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAC;AAChE,OAAO,EAAE,eAAe,EAAE,mBAAmB,EAAE,MAAM,gBAAgB,CAAC;AAEtE;mFACmF;AACnF,MAAM,UAAU,mBAAmB;IACjC,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,eAAe,EAAE,EAAE,GAAG,iBAAiB,EAAE,EAAE,GAAG,mBAAmB,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;AACvG,CAAC;AAED,6EAA6E;AAC7E,SAAS,OAAO,CAAC,CAAS;IACxB,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IACjC,OAAO,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;AACzC,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,IAAc;IAClD,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,mBAAmB,EAAE,CAAC,CAAC;IACjD,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AACxD,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAC7B,IAAY,EACZ,MAAc,EACd,YAAsB,OAAO,CAAC,IAAI,EAAE,eAAe,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,EAAE;IAClE,gBAAgB,EAAE,oBAAoB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;CACtD,CAAC;IAEF,+EAA+E;IAC/E,iFAAiF;IACjF,mFAAmF;IACnF,OAAO,SAAS,CAAC,MAAM,CACrB,CAAC,CAAC,EAAE,EAAE,CACJ,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,CAAC;QACrB,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,IAAI,IAAI,aAAa,CAAC,CAAC,CAAC,KAAK,IAAI,IAAI,eAAe,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,CACvF,CAAC;AACJ,CAAC;AAaD;;;;GAIG;AACH,MAAM,UAAU,eAAe,CAAC,IAAY,EAAE,MAAc,EAAE,SAAoB;IAChF,MAAM,GAAG,GAAiB,EAAE,CAAC;IAC7B,KAAK,MAAM,GAAG,IAAI,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,CAAC;QAC3D,IAAI,CAAoC,CAAC;QACzC,IAAI,CAAC;YACH,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QACpB,CAAC;QAAC,MAAM,CAAC;YACP,SAAS;QACX,CAAC;QACD,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;IAChF,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC"}
+{"version":3,"file":"source-files.js","sourceRoot":"","sources":["../../src/graph/source-files.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AACH,OAAO,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACnC,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAC5C,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAChG,OAAO,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAC;AAChE,OAAO,EAAE,eAAe,EAAE,mBAAmB,EAAE,MAAM,gBAAgB,CAAC;AAEtE;mFACmF;AACnF,MAAM,UAAU,mBAAmB;IACjC,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,eAAe,EAAE,EAAE,GAAG,iBAAiB,EAAE,EAAE,GAAG,mBAAmB,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;AACvG,CAAC;AAED,6EAA6E;AAC7E,SAAS,OAAO,CAAC,CAAS;IACxB,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;IACjC,OAAO,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC;AACzC,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,IAAc;IAClD,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,mBAAmB,EAAE,CAAC,CAAC;IACjD,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AACxD,CAAC;AAED;;;;;;;GAOG;AACH;;;2EAG2E;AAC3E,MAAM,UAAU,gBAAgB,CAC9B,KAAe,EACf,IAAY,EACZ,QAA8B;IAE9B,IAAI,CAAC,QAAQ,IAAI,QAAQ,CAAC,IAAI,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IACnD,OAAO,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE;QAC1B,MAAM,GAAG,GAAG,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;QAChC,OAAO,CAAC,GAAG,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,CAAC,IAAI,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IACzE,CAAC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,UAAU,eAAe,CAC7B,IAAY,EACZ,MAAc,EACd,YAAsB,OAAO,CAAC,IAAI,EAAE,eAAe,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,EAAE;IAClE,gBAAgB,EAAE,oBAAoB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IACrD,iBAAiB,EAAE,qBAAqB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;CACxD,CAAC,EACF,QAA8B;IAE9B,+EAA+E;IAC/E,iFAAiF;IACjF,mFAAmF;IACnF,OAAO,gBAAgB,CACrB,SAAS,CAAC,MAAM,CACd,CAAC,CAAC,EAAE,EAAE,CACJ,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,CAAC;QACrB,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,IAAI,IAAI,aAAa,CAAC,CAAC,CAAC,KAAK,IAAI,IAAI,eAAe,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,CACvF,EACD,IAAI,EACJ,QAAQ,CACT,CAAC;AACJ,CAAC;AAaD;;;;GAIG;AACH,MAAM,UAAU,eAAe,CAC7B,IAAY,EACZ,MAAc,EACd,SAAoB,EACpB,QAA8B;IAE9B,MAAM,GAAG,GAAiB,EAAE,CAAC;IAC7B,KAAK,MAAM,GAAG,IAAI,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,QAAQ,CAAC,EAAE,CAAC;QACrE,IAAI,CAAoC,CAAC;QACzC,IAAI,CAAC;YACH,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QACpB,CAAC;QAAC,MAAM,CAAC;YACP,SAAS;QACX,CAAC;QACD,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;IAChF,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC"}

package/dist/graph/traverse-cli.d.ts

@@ -16,8 +16,18 @@ export interface CallersCliOptions {
  * surfaces walk the same edges via the same `resolveSymbol` / `edgeWalk` core. */
 export declare function headerOf(n: NodeV1): string;
 /** `showDepth` is set for multi-hop walks (depth > 1), matching the old
- * `graft impact` output which tagged every hit with its BFS depth. */
-export declare function hitLine(direction: Direction, hit: EdgeHit, showDepth: boolean): string;
+ * `graft impact` output which tagged every hit with its BFS depth.
+ *
+ * `quote`, when given, is the call site itself — the line inside the hit where it
+ * references the symbol. An edge that says "total calls add" is a claim; the line
+ * under it is the evidence, and it saves opening the file to check.
+ */
+export declare function hitLine(direction: Direction, hit: EdgeHit, showDepth: boolean, quote?: Quote): string;
+/** A quoted source line: where the edge actually happens. */
+interface Quote {
+    n: number;
+    text: string;
+}
 /** Tokens-saved baseline for a callers/callees walk: the files of the matched
  * symbols plus every resolved edge endpoint, read whole — the files you'd open
  * to trace these edges by hand. Shared by the CLI and the MCP tool so both
@@ -41,4 +51,5 @@ export declare function looseNoteFor(direction: Direction, name: string, candida
  * unknown — both are caller-facing mistakes, not recoverable states.
  */
 export declare function runCallersCommand(query: string, dir: string, opts: CallersCliOptions): void;
+export {};
 //# sourceMappingURL=traverse-cli.d.ts.map

package/dist/graph/traverse-cli.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"traverse-cli.d.ts","sourceRoot":"","sources":["../../src/graph/traverse-cli.ts"],"names":[],"mappings":"AAeA,OAAO,EAA2B,KAAK,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAE9E,OAAO,EAA2B,KAAK,SAAS,EAAE,KAAK,OAAO,EAAE,MAAM,eAAe,CAAC;AACtF,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,YAAY,CAAC;AAElD,MAAM,WAAW,iBAAiB;IAChC,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,uEAAuE;IACvE,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,gFAAgF;IAChF,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,oFAAoF;IACpF,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAKD;;kFAEkF;AAClF,wBAAgB,QAAQ,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAE1C;AAED;sEACsE;AACtE,wBAAgB,OAAO,CAAC,SAAS,EAAE,SAAS,EAAE,GAAG,EAAE,OAAO,EAAE,SAAS,EAAE,OAAO,GAAG,MAAM,CAKtF;AAED;;;sCAGsC;AACtC,wBAAgB,cAAc,CAC5B,KAAK,EAAE,OAAO,EACd,OAAO,EAAE;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,OAAO,EAAE,CAAA;CAAE,EAAE,GAC7C,OAAO,GAAG,SAAS,CAOrB;AAED;;;;;;mFAMmF;AACnF,wBAAgB,YAAY,CAAC,SAAS,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,GAAG,MAAM,CAQ/F;AAiDD;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,GAAG,IAAI,CA0E3F"}
+{"version":3,"file":"traverse-cli.d.ts","sourceRoot":"","sources":["../../src/graph/traverse-cli.ts"],"names":[],"mappings":"AAgBA,OAAO,EAA2B,KAAK,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAE9E,OAAO,EAA2B,KAAK,SAAS,EAAE,KAAK,OAAO,EAAE,MAAM,eAAe,CAAC;AACtF,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,YAAY,CAAC;AAElD,MAAM,WAAW,iBAAiB;IAChC,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,uEAAuE;IACvE,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,gFAAgF;IAChF,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,oFAAoF;IACpF,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAKD;;kFAEkF;AAClF,wBAAgB,QAAQ,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAE1C;AAED;;;;;;GAMG;AACH,wBAAgB,OAAO,CAAC,SAAS,EAAE,SAAS,EAAE,GAAG,EAAE,OAAO,EAAE,SAAS,EAAE,OAAO,EAAE,KAAK,CAAC,EAAE,KAAK,GAAG,MAAM,CAMrG;AAED,6DAA6D;AAC7D,UAAU,KAAK;IACb,CAAC,EAAE,MAAM,CAAC;IACV,IAAI,EAAE,MAAM,CAAC;CACd;AAkBD;;;sCAGsC;AACtC,wBAAgB,cAAc,CAC5B,KAAK,EAAE,OAAO,EACd,OAAO,EAAE;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,OAAO,EAAE,CAAA;CAAE,EAAE,GAC7C,OAAO,GAAG,SAAS,CAOrB;AAED;;;;;;mFAMmF;AACnF,wBAAgB,YAAY,CAAC,SAAS,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,GAAG,MAAM,CAQ/F;AAiDD;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,iBAAiB,GAAG,IAAI,CA4E3F"}

package/dist/graph/traverse-cli.js

@@ -12,6 +12,7 @@
  * tool (`src/mcp/tools.ts`), so both surfaces render identical reports.
  */
 import { resolve } from "node:path";
+import { fileReader, referenceLine, wordRe } from "../blast/evidence.js";
 import { contextDirFor } from "../context/node-file.js";
 import { withSavings, savingsFor } from "../context/savings.js";
 import { loadGraphCached } from "./load.js";
@@ -25,12 +26,30 @@ export function headerOf(n) {
     return `${n.name} · ${n.kind} · ${n.path}:${n.span}`;
 }
 /** `showDepth` is set for multi-hop walks (depth > 1), matching the old
- * `graft impact` output which tagged every hit with its BFS depth. */
-export function hitLine(direction, hit, showDepth) {
+ * `graft impact` output which tagged every hit with its BFS depth.
+ *
+ * `quote`, when given, is the call site itself — the line inside the hit where it
+ * references the symbol. An edge that says "total calls add" is a claim; the line
+ * under it is the evidence, and it saves opening the file to check.
+ */
+export function hitLine(direction, hit, showDepth, quote) {
     const arrow = ARROW[direction];
     const depthTag = showDepth ? ` [depth ${hit.depth}]` : "";
     const label = hit.node ? `${hit.node.name} (${hit.node.path}:${hit.node.span})` : `${hit.id} (unresolved import)`;
-    return `  ${hit.relation} ${arrow} ${label}${depthTag}`;
+    const line = `  ${hit.relation} ${arrow} ${label}${depthTag}`;
+    return quote ? `${line}\n      ${quote.n}: ${quote.text.trim()}` : line;
+}
+/**
+ * The call site for one hit, or nothing.
+ *
+ * Only for a resolved hit whose span we can read: an unresolved import has no
+ * file, and a hit at depth 2+ references something in between rather than the
+ * symbol asked about, so quoting it would point at the wrong line.
+ */
+function quoteFor(hit, name, read) {
+    if (!hit.node || hit.depth > 1)
+        return undefined;
+    return referenceLine(hit.node.path, hit.node.span, [wordRe(name)], read) ?? undefined;
 }
 /** Tokens-saved baseline for a callers/callees walk: the files of the matched
  * symbols plus every resolved edge endpoint, read whole — the files you'd open
@@ -152,13 +171,15 @@ export function runCallersCommand(query, dir, opts) {
         return;
     }
     const lines = [];
+    // One reader for the whole walk: several hits usually live in the same file.
+    const read = fileReader(root);
     for (const { symbol, hits } of results) {
         lines.push(headerOf(symbol));
         if (hits.length === 0)
             lines.push(looseNoteFor(direction, symbol.name, matches.length));
         else
             for (const h of hits)
-                lines.push(hitLine(direction, h, showDepth));
+                lines.push(hitLine(direction, h, showDepth, quoteFor(h, symbol.name, read)));
         lines.push("");
     }
     const body = lines.join("\n").replace(/\n+$/, "\n");

package/dist/graph/traverse-cli.js.map

@@ -1 +1 @@
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package/dist/graph/workspace-cli.d.ts

@@ -15,6 +15,8 @@ export interface WorkspaceBuildOptions {
     includeDirs?: string[];
     /** An explicit CLI submodule choice to persist into every child repo. */
     followSubmodules?: boolean;
+    /** An explicit CLI nested-clone choice to persist into every child repo. */
+    followNestedRepos?: boolean;
 }
 /** Build every git child into its own committable `graft/`, then replace the
  * parent's `graft/` with `workspace.json`. Prints the one-time split warning

package/dist/graph/workspace-cli.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"workspace-cli.d.ts","sourceRoot":"","sources":["../../src/graph/workspace-cli.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAa/C,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,OAAO,CAAC;IACd,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;qEACiE;IACjE,WAAW,EAAE,YAAY,CAAC;IAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB;;;gEAG4D;IAC5D,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;IACvB,yEAAyE;IACzE,gBAAgB,CAAC,EAAE,OAAO,CAAC;CAC5B;AAED;;kDAEkD;AAClD,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAmChG;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,KAAK,EAAE,MAAM,EACb,IAAI,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,EAAE,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,GACtF,IAAI,CAIN;AAED,wBAAgB,gBAAgB,CAC9B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,OAAO,EAAE,MAAM,EACf,IAAI,EAAE;IAAE,UAAU,CAAC,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,GAC9D,IAAI,CAYN;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,IAAI,EAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,GACzB,IAAI,CAEN;AAED,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAItF;AAED,wBAAgB,mBAAmB,CACjC,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,MAAM,EAAE,MAAM,EACd,IAAI,EAAE;IAAE,SAAS,CAAC,EAAE,SAAS,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,EAAE,CAAC,EAAE,MAAM,CAAA;CAAE,GAC3D,IAAI,CAON"}
+{"version":3,"file":"workspace-cli.d.ts","sourceRoot":"","sources":["../../src/graph/workspace-cli.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAa/C,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,OAAO,CAAC;IACd,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB;qEACiE;IACjE,WAAW,EAAE,YAAY,CAAC;IAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB;;;gEAG4D;IAC5D,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;IACvB,yEAAyE;IACzE,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,4EAA4E;IAC5E,iBAAiB,CAAC,EAAE,OAAO,CAAC;CAC7B;AAED;;kDAEkD;AAClD,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAsChG;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,KAAK,EAAE,MAAM,EACb,IAAI,EAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,EAAE,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,GACtF,IAAI,CAIN;AAED,wBAAgB,gBAAgB,CAC9B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,OAAO,EAAE,MAAM,EACf,IAAI,EAAE;IAAE,UAAU,CAAC,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,GAC9D,IAAI,CAYN;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,IAAI,EAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,GACzB,IAAI,CAEN;AAED,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAItF;AAED,wBAAgB,mBAAmB,CACjC,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GAAG,SAAS,EAC5B,MAAM,EAAE,MAAM,EACd,IAAI,EAAE;IAAE,SAAS,CAAC,EAAE,SAAS,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,EAAE,CAAC,EAAE,MAAM,CAAA;CAAE,GAC3D,IAAI,CAON"}

package/dist/graph/workspace-cli.js

@@ -24,6 +24,9 @@ export async function runWorkspaceBuild(root, opts) {
         if (opts.followSubmodules !== undefined) {
             childConfigPatch.followSubmodules = opts.followSubmodules;
         }
+        if (opts.followNestedRepos !== undefined) {
+            childConfigPatch.followNestedRepos = opts.followNestedRepos;
+        }
         if (Object.keys(childConfigPatch).length > 0) {
             patchBuildConfig(childDir, childConfigPatch);
         }

package/dist/graph/workspace-cli.js.map

@@ -1 +1 @@
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package/dist/graph/workspace.d.ts.map

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package/dist/graph/workspace.js

@@ -32,6 +32,7 @@ import { callersSavings, headerOf, hitLine, looseNoteFor, } from "./traverse-cli
 import { edgeWalk, resolveSymbol } from "./traverse.js";
 import { wiringPath } from "./write.js";
 import { ask } from "../ask/ask.js";
+import { fileFirstRoundRobin } from "../ask/file-selection.js";
 import { fuseScopes, STRONG_FLOOR, HIGH_FLOOR } from "../ask/fuse.js";
 import { grepGraph } from "../search/grep.js";
 import { formatGrepResult, zeroHitNote } from "../search/grep-cli.js";
@@ -135,6 +136,11 @@ function prefixPointer(child, pointer) {
     })
         .join(", ");
 }
+/** The exact child-relative file owning a lexical symbol hit. File nodes use a
+ * bare path; definition hits append `:Lx-Ly`. */
+function hitFile(pointer) {
+    return pointer.match(/^(.*):L\d+-L\d+$/)?.[1] ?? pointer;
+}
 // STRONG_FLOOR / HIGH_FLOOR (a child federates if its top hit matched a
 // query term in a NAME/PATH field ≥ STRONG_FLOOR, OR its overall name+path+
 // body coverage is broad enough to be real even body-only, ≥ HIGH_FLOOR) are
@@ -192,6 +198,9 @@ export function federateAsk(root, override, query, opts = {}) {
                 full: opts.full,
                 graphRank: opts.graphRank,
                 in: childIn,
+                // The parent owns the final cross-repo ranking. Selecting inside each
+                // child would be undone by fusion and could truncate a hybrid list.
+                fileFirst: false,
             });
         }
         catch {
@@ -238,10 +247,25 @@ export function federateAsk(root, override, query, opts = {}) {
         });
     }
     const fused = fuseScopes(docs);
-    const hits = fused.ranked.slice(0, limit).map((rd) => {
+    const rankedHits = fused.ranked.map((rd) => {
         const { child, hit } = back.get(rd.id);
-        return { ...hit, score: rd.score, scope: rd.scope, pointer: prefixPointer(child, hit.pointer) };
+        const value = {
+            ...hit,
+            score: rd.score,
+            scope: rd.scope,
+            pointer: prefixPointer(child, hit.pointer),
+        };
+        return {
+            // Lexical symbols share a file queue. Concepts and structural neighbours
+            // remain singleton partitions, so this lexical selection layer cannot
+            // reorder `who calls` / `dependencies of` answers.
+            group: hit.kind === "symbol"
+                ? `file:${child}/${hitFile(hit.pointer)}`
+                : `singleton:${child}:${rd.id}`,
+            value,
+        };
     });
+    const hits = fileFirstRoundRobin(rankedHits, limit);
     const alsoMatched = [...fused.alsoMatched, ...gatedOut];
     const note = coverageNote(wg);
     const result = { query, mode: hits.length ? "lexical" : "empty", hits };

package/dist/graph/workspace.js.map

@@ -1 +1 @@
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package/dist/hosts/mcp-config.d.ts

@@ -27,6 +27,18 @@ export declare function serverEntry(opts?: {
     args: string[];
 };
 export declare function mergeJsonKey(id: string, path: string, topKey: string, entry: object): McpWrite;
+/**
+ * Remove the `[mcp_servers.graft]` table from a TOML config, returning the rest.
+ *
+ * Line-based on purpose: a real parse-and-reserialize would reformat the user's
+ * whole file. The table runs from its header to the next `[`-header or EOF, which
+ * is exactly the shape {@link upsertCodexToml} appends. Exported so the writer and
+ * `retract.ts` can never disagree about what "graft's section" means.
+ */
+export declare function stripTomlSection(text: string): {
+    rest: string;
+    found: boolean;
+};
 /**
  * The MCP config files selecting these hosts would touch — pure, no writes.
  * Codex's target is the user-level `~/.codex/config.toml`, so it is scoped

package/dist/hosts/mcp-config.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"mcp-config.d.ts","sourceRoot":"","sources":["../../src/hosts/mcp-config.ts"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,WAAW,CAAC;AAE9C,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,SAAS,GAAG,SAAS,GAAG,WAAW,GAAG,qBAAqB,CAAC;CACrE;AAED,0EAA0E;AAC1E,MAAM,WAAW,SAAU,SAAQ,YAAY;IAC7C,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IACxB,2DAA2D;IAC3D,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,6DAA6D;IAC7D,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AA2BD;;;;;;;GAOG;AACH,wBAAgB,WAAW,CAAC,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GAAG;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,EAAE,CAAA;CAAE,CAIhG;AAYD,wBAAgB,YAAY,CAAC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,QAAQ,CAoB9F;AAKD;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,OAAO,CAAA;CAAE,CAW/E;AA6CD;;;;GAIG;AACH,wBAAgB,UAAU,CACxB,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EAAE,EACb,IAAI,GAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAA;CAAO,GAC3B,SAAS,EAAE,CAkDb;AAED,wBAAgB,kBAAkB,CAChC,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,EAAE,EACb,IAAI,GAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GAC7C,QAAQ,EAAE,CAQZ"}

package/dist/hosts/mcp-config.js

@@ -83,19 +83,60 @@ export function mergeJsonKey(id, path, topKey, entry) {
     writeFileSync(path, `${JSON.stringify(root, null, 2)}\n`);
     return { id, path, action };
 }
+/** The `[mcp_servers.graft]` table header, as written and as matched. */
+const TOML_HEADER = '[mcp_servers.graft]';
+/**
+ * Remove the `[mcp_servers.graft]` table from a TOML config, returning the rest.
+ *
+ * Line-based on purpose: a real parse-and-reserialize would reformat the user's
+ * whole file. The table runs from its header to the next `[`-header or EOF, which
+ * is exactly the shape {@link upsertCodexToml} appends. Exported so the writer and
+ * `retract.ts` can never disagree about what "graft's section" means.
+ */
+export function stripTomlSection(text) {
+    const lines = text.split('\n');
+    const start = lines.findIndex((l) => l.trim() === TOML_HEADER);
+    if (start === -1)
+        return { rest: text, found: false };
+    let end = start + 1;
+    while (end < lines.length && !lines[end].trimStart().startsWith('['))
+        end++;
+    const rest = [...lines.slice(0, start), ...lines.slice(end)]
+        .join('\n')
+        .replace(/\n{3,}/g, '\n\n')
+        .replace(/^\n+/, '');
+    return { rest, found: true };
+}
+/**
+ * Register graft in a TOML config, replacing any section a previous version left.
+ *
+ * The old behaviour was to skip entirely once the header existed, which froze the
+ * launch command at whatever the first init wrote: a repo wired when graft wasn't
+ * on PATH kept the slow `npx` form forever, and no upgrade could correct it. Strip
+ * and re-append instead, so this converges like every other writer — foreign
+ * tables are untouched either way.
+ */
 function upsertCodexToml(id, path) {
     const existed = existsSync(path);
     const text = existed ? readFileSync(path, 'utf8') : '';
-    if (/^\[mcp_servers\.graft\]$/m.test(text))
-        return { id, path, action: 'unchanged' };
     const { command, args } = serverEntry();
     const argList = args.map((a) => JSON.stringify(a)).join(", ");
-    const section = `[mcp_servers.graft]\ncommand = \"${command}\"\nargs = [${argList}]\n`;
-    const sep = text.length === 0 ? '' : text.endsWith('\n') ? '\n' : '\n\n';
+    const section = `${TOML_HEADER}\ncommand = \"${command}\"\nargs = [${argList}]\n`;
+    const { rest, found } = stripTomlSection(text);
+    // Byte-identical already: don't rewrite the file just to reorder it.
+    if (found && text === appendSection(rest, section))
+        return { id, path, action: 'unchanged' };
     mkdirSync(dirname(path), { recursive: true });
-    writeFileSync(path, `${text}${sep}${section}`);
+    writeFileSync(path, appendSection(rest, section));
     return { id, path, action: existed ? 'updated' : 'created' };
 }
+/** Append a section after exactly one blank line, or at the top of an empty file. */
+function appendSection(text, section) {
+    if (text.trim() === '')
+        return section;
+    const sep = text.endsWith('\n\n') ? '' : text.endsWith('\n') ? '\n' : '\n\n';
+    return `${text}${sep}${section}`;
+}
 function jsonTarget(hostId, id, path, topKey, entry, scope = 'repo') {
     return { hostId, id, path, scope, kind: 'mcp', what: `${topKey}.graft`, format: 'json', topKey, entry };
 }
@@ -126,6 +167,14 @@ export function mcpTargets(repo, ids, opts = {}) {
             case 'kiro':
                 out.push(jsonTarget(id, id, join(repo, '.kiro', 'settings', 'mcp.json'), 'mcpServers', entry));
                 break;
+            case 'grok':
+                // Grok reads MCP from repo-level `.grok/config.toml` (`[mcp_servers.<name>]`),
+                // the same TOML shape Codex uses at ~/.codex/config.toml.
+                out.push({
+                    hostId: id, id: 'grok', path: join(repo, '.grok', 'config.toml'),
+                    scope: 'repo', kind: 'mcp', what: '[mcp_servers.graft]', format: 'toml',
+                });
+                break;
             case 'agents':
                 // Guarded on the CLI actually being installed, so a plan only ever
                 // lists files a real run would touch.