@namzu/sdk 0.6.0 → 1.1.0

package/dist/runtime/query/__tests__/prompt.test.js

@@ -22,14 +22,63 @@ describe('PromptBuilder runtime context', () => {
                 label: 'test runtime',
                 outputDirectory: 'outputs/',
                 outputFileMarker: 'OUTPUT_FILE: <filename> - <description>',
-                notes: ['Mirror generated files after the turn.'],
+                notes: ['Register generated files after the turn.'],
             },
         }).build('full', '/tmp/work');
         expect(prompt).toContain('Runtime: test runtime');
         expect(prompt).toContain('Working directory: /tmp/work');
         expect(prompt).toContain('Output directory: outputs/');
         expect(prompt).toContain('OUTPUT_FILE: <filename> - <description>');
-        expect(prompt).toContain('Mirror generated files after the turn.');
+        expect(prompt).toContain('Register generated files after the turn.');
+    });
+    it('discloses available skills even when the host supplies a systemPrompt', () => {
+        const prompt = new PromptBuilder({
+            systemPrompt: 'You are a project assistant.',
+            tools: makeToolRegistry(),
+            skills: [
+                {
+                    metadata: {
+                        name: 'delivery-briefing',
+                        description: 'Draft and edit delivery briefings from grounded inputs.',
+                    },
+                    dirPath: '/repo/.agents/skills/delivery-briefing',
+                },
+            ],
+        }).build('full', '/tmp/work');
+        expect(prompt).toContain('You are a project assistant.');
+        expect(prompt).toContain('## Available Skills');
+        expect(prompt).toContain('<available_skills>');
+        expect(prompt).toContain('delivery-briefing');
+        expect(prompt).toContain('Draft and edit delivery briefings');
+        expect(prompt).toContain('<location>/repo/.agents/skills/delivery-briefing/SKILL.md</location>');
+        expect(prompt).toContain('The following block is a manifest');
+        expect(prompt).not.toContain('## Loaded Skills');
+    });
+    it('includes loaded skill bodies with systemPrompt while preserving the metadata catalogue', () => {
+        const prompt = new PromptBuilder({
+            systemPrompt: 'You are a cowork supervisor.',
+            tools: makeToolRegistry(),
+            skills: [
+                {
+                    metadata: {
+                        name: 'structured-file-authoring',
+                        description: 'Create structured files with bounded edit chunks.',
+                        license: 'MIT',
+                        compatibility: 'Requires file tools',
+                        allowedTools: 'read write edit',
+                    },
+                    body: 'Use skeleton-first writes and bounded edit chunks.',
+                    dirPath: '/repo/.agents/skills/structured-file-authoring',
+                },
+            ],
+        }).build('full', '/tmp/work');
+        expect(prompt).toContain('## Available Skills');
+        expect(prompt).toContain('<license>MIT</license>');
+        expect(prompt).toContain('<compatibility>Requires file tools</compatibility>');
+        expect(prompt).toContain('<allowed_tools>read write edit</allowed_tools>');
+        expect(prompt).toContain('read the SKILL.md at its <location> before writing code');
+        expect(prompt).toContain('## Loaded Skills');
+        expect(prompt).toContain('Use skeleton-first writes');
     });
 });
 //# sourceMappingURL=prompt.test.js.map

package/dist/runtime/query/__tests__/prompt.test.js.map

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package/dist/runtime/query/__tests__/stream-recovery.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=stream-recovery.test.d.ts.map

package/dist/runtime/query/__tests__/stream-recovery.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"stream-recovery.test.d.ts","sourceRoot":"","sources":["../../../../src/runtime/query/__tests__/stream-recovery.test.ts"],"names":[],"mappings":""}

package/dist/runtime/query/__tests__/stream-recovery.test.js

@@ -0,0 +1,126 @@
+import { mkdtemp, rm } from 'node:fs/promises';
+import { tmpdir } from 'node:os';
+import { join } from 'node:path';
+import { afterEach, describe, expect, it, vi } from 'vitest';
+import { z } from 'zod';
+import { ToolRegistry } from '../../../registry/tool/execute.js';
+import { createUserMessage } from '../../../types/message/index.js';
+import { drainQuery } from '../index.js';
+const ZERO_USAGE = {
+    promptTokens: 0,
+    completionTokens: 0,
+    totalTokens: 0,
+    cachedTokens: 0,
+    cacheWriteTokens: 0,
+};
+class IdleDuringToolInputProvider {
+    id = 'idle-during-tool-input';
+    name = 'Idle During Tool Input Provider';
+    calls = 0;
+    async *chatStream() {
+        this.calls += 1;
+        if (this.calls === 1) {
+            yield {
+                id: 'msg_1',
+                delta: {
+                    toolCalls: [
+                        {
+                            index: 0,
+                            id: 'toolu_write_1',
+                            type: 'function',
+                            function: { name: 'write_file' },
+                        },
+                    ],
+                },
+            };
+            yield {
+                id: 'msg_1',
+                delta: {
+                    toolCalls: [
+                        {
+                            index: 0,
+                            id: 'toolu_write_1',
+                            function: {
+                                arguments: '{"path":"/tmp/out.md","content":"partial',
+                            },
+                        },
+                    ],
+                },
+            };
+            throw new Error('Anthropic stream idle for 90s');
+        }
+        yield {
+            id: 'msg_2',
+            delta: { content: 'Recovered after retry guidance.' },
+        };
+        yield {
+            id: 'msg_2',
+            delta: {},
+            finishReason: 'stop',
+            usage: ZERO_USAGE,
+        };
+    }
+}
+describe('query stream recovery', () => {
+    let workdirs = [];
+    afterEach(async () => {
+        await Promise.all(workdirs.map((dir) => rm(dir, { recursive: true, force: true })));
+        workdirs = [];
+    });
+    it('turns an idle stream with partial tool JSON into retryable tool feedback', async () => {
+        const provider = new IdleDuringToolInputProvider();
+        const actualWrite = vi.fn(async () => ({ success: true, output: 'should not run' }));
+        const tools = new ToolRegistry();
+        tools.register({
+            name: 'write_file',
+            description: 'write a file',
+            inputSchema: z.object({
+                path: z.string(),
+                content: z.string(),
+            }),
+            execute: actualWrite,
+        });
+        const workingDirectory = await mkdtemp(join(tmpdir(), 'namzu-stream-recovery-'));
+        workdirs.push(workingDirectory);
+        const events = [];
+        const run = await drainQuery({
+            provider,
+            tools,
+            runConfig: {
+                model: 'mock-model',
+                timeoutMs: 5_000,
+                tokenBudget: 100_000,
+                maxIterations: 3,
+                maxResponseTokens: 256,
+            },
+            agentId: 'agent_test',
+            agentName: 'Test Agent',
+            messages: [createUserMessage('write the file')],
+            workingDirectory,
+            sessionId: 'ses_stream_recovery',
+            threadId: 'thd_stream_recovery',
+            projectId: 'prj_stream_recovery',
+            tenantId: 'tnt_stream_recovery',
+        }, (event) => {
+            events.push(event);
+        });
+        expect(run.status).toBe('completed');
+        expect(run.result).toBe('Recovered after retry guidance.');
+        expect(provider.calls).toBe(2);
+        expect(actualWrite).not.toHaveBeenCalled();
+        expect(events.some((event) => event.type === 'run_failed')).toBe(false);
+        expect(events.some((event) => event.type === 'tool_input_completed' &&
+            event.inputTruncated === true &&
+            JSON.stringify(event.input) === '{}')).toBe(true);
+        expect(JSON.stringify(events)).not.toContain('__namzuTruncated');
+        const completedTool = events.find((event) => event.type === 'tool_completed' && event.toolUseId === 'toolu_write_1');
+        expect(completedTool).toMatchObject({
+            type: 'tool_completed',
+            toolName: 'write_file',
+            isError: true,
+        });
+        expect(completedTool?.type === 'tool_completed' ? completedTool.result : '').toContain('call was cut off');
+        expect(completedTool?.type === 'tool_completed' ? completedTool.result : '').toContain('extend it with edit using insertLine');
+    });
+});
+//# sourceMappingURL=stream-recovery.test.js.map

package/dist/runtime/query/__tests__/stream-recovery.test.js.map

@@ -0,0 +1 @@
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package/dist/runtime/query/continuation.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Synthetic user prompt injected by the iteration loop when a turn
+ * ends with `stop_reason: max_tokens` AND no tool_use. Mirrors
+ * Claude.ai's "Continue" affordance: the loop pushes this message
+ * back into the conversation and fires another iteration, letting
+ * the model pick up where it was cut off.
+ *
+ * The exact string is the marker used by `resolveResult` (in
+ * `manager/run/persistence.ts`) to detect auto-continuation
+ * boundaries: when walking the message tail it skips user messages
+ * that match this constant verbatim, so the run's `result` field
+ * concatenates the full multi-turn assistant output instead of only
+ * surfacing the trailing continuation chunk.
+ */
+export declare const AUTO_CONTINUATION_USER_MESSAGE = "Continue exactly where you left off. Do not repeat content you already wrote \u2014 pick up at the next token.";
+//# sourceMappingURL=continuation.d.ts.map

package/dist/runtime/query/continuation.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"continuation.d.ts","sourceRoot":"","sources":["../../../src/runtime/query/continuation.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AACH,eAAO,MAAM,8BAA8B,mHACiE,CAAA"}

package/dist/runtime/query/continuation.js

@@ -0,0 +1,16 @@
+/**
+ * Synthetic user prompt injected by the iteration loop when a turn
+ * ends with `stop_reason: max_tokens` AND no tool_use. Mirrors
+ * Claude.ai's "Continue" affordance: the loop pushes this message
+ * back into the conversation and fires another iteration, letting
+ * the model pick up where it was cut off.
+ *
+ * The exact string is the marker used by `resolveResult` (in
+ * `manager/run/persistence.ts`) to detect auto-continuation
+ * boundaries: when walking the message tail it skips user messages
+ * that match this constant verbatim, so the run's `result` field
+ * concatenates the full multi-turn assistant output instead of only
+ * surfacing the trailing continuation chunk.
+ */
+export const AUTO_CONTINUATION_USER_MESSAGE = 'Continue exactly where you left off. Do not repeat content you already wrote — pick up at the next token.';
+//# sourceMappingURL=continuation.js.map

package/dist/runtime/query/continuation.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"continuation.js","sourceRoot":"","sources":["../../../src/runtime/query/continuation.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AACH,MAAM,CAAC,MAAM,8BAA8B,GAC1C,2GAA2G,CAAA"}

package/dist/runtime/query/executor.d.ts

@@ -19,6 +19,7 @@ export interface ToolExecutorConfig {
     permissionMode: PermissionMode;
     env: Record<string, string>;
     abortSignal: AbortSignal;
+    allowedTools?: readonly string[];
     sandbox?: Sandbox;
     invocationState?: InvocationState;
     pluginManager?: PluginLifecycleManager;
@@ -37,6 +38,8 @@ export declare class ToolExecutor {
     private log;
     private workingStateManager?;
     private probes;
+    private readonly readPaths;
+    private readonly fileReadTracker;
     constructor(config: ToolExecutorConfig, activityStore: ActivityStore, emitEvent: EmitEvent, log: Logger, probes?: ProbeRegistry);
     setWorkingStateManager(manager: WorkingStateManager): void;
     setSandbox(sandbox: Sandbox): void;

package/dist/runtime/query/executor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"executor.d.ts","sourceRoot":"","sources":["../../../src/runtime/query/executor.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACtE,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAGvE,OAAO,EAAE,KAAK,aAAa,EAAiC,MAAM,yBAAyB,CAAA;AAC3F,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,gCAAgC,CAAA;AACnE,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AACrD,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,iCAAiC,CAAA;AACtE,OAAO,EAAE,KAAK,OAAO,EAAoC,MAAM,8BAA8B,CAAA;AAC7F,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAA;AAErE,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,+BAA+B,CAAA;AAC3E,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,0BAA0B,CAAA;AACxD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,8BAA8B,CAAA;AAC3D,OAAO,KAAK,EAGX,oBAAoB,EAEpB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,uBAAuB,CAAA;AAGnD,MAAM,MAAM,SAAS,GAAG,CAAC,KAAK,EAAE,QAAQ,KAAK,OAAO,CAAC,IAAI,CAAC,CAAA;AAE1D,MAAM,WAAW,kBAAkB;IAClC,KAAK,EAAE,oBAAoB,CAAA;IAC3B,KAAK,EAAE,KAAK,CAAA;IACZ,gBAAgB,EAAE,MAAM,CAAA;IACxB,cAAc,EAAE,cAAc,CAAA;IAC9B,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IAC3B,WAAW,EAAE,WAAW,CAAA;IACxB,YAAY,CAAC,EAAE,SAAS,MAAM,EAAE,CAAA;IAChC,OAAO,CAAC,EAAE,OAAO,CAAA;IACjB,eAAe,CAAC,EAAE,eAAe,CAAA;IACjC,aAAa,CAAC,EAAE,sBAAsB,CAAA;CACtC;AAOD,MAAM,WAAW,kBAAkB;IAClC,QAAQ,EAAE,OAAO,EAAE,CAAA;IACnB,OAAO,EAAE,KAAK,CAAC;QAAE,UAAU,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC,CAAA;CACtD;AAED,qBAAa,YAAY;IACxB,OAAO,CAAC,MAAM,CAAoB;IAClC,OAAO,CAAC,aAAa,CAAe;IACpC,OAAO,CAAC,SAAS,CAAW;IAC5B,OAAO,CAAC,GAAG,CAAQ;IACnB,OAAO,CAAC,mBAAmB,CAAC,CAAqB;IACjD,OAAO,CAAC,MAAM,CAAe;IAC7B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAyB;IACnD,OAAO,CAAC,QAAQ,CAAC,eAAe,CAK/B;gBAGA,MAAM,EAAE,kBAAkB,EAC1B,aAAa,EAAE,aAAa,EAC5B,SAAS,EAAE,SAAS,EACpB,GAAG,EAAE,MAAM,EACX,MAAM,GAAE,aAAoC;IAS7C,sBAAsB,CAAC,OAAO,EAAE,mBAAmB,GAAG,IAAI;IAI1D,UAAU,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI;IAI5B,YAAY,CAAC,QAAQ,EAAE,sBAAsB,GAAG,OAAO,CAAC,kBAAkB,CAAC;IAkDjF,OAAO,CAAC,gBAAgB;YAoBV,aAAa;YAkMb,cAAc;IAU5B,OAAO,CAAC,uBAAuB;YAuCjB,eAAe;YAmCf,0BAA0B;IAuCxC,OAAO,CAAC,aAAa;CAiBrB"}

package/dist/runtime/query/executor.js

@@ -11,6 +11,13 @@ export class ToolExecutor {
     log;
     workingStateManager;
     probes;
+    readPaths = new Set();
+    fileReadTracker = {
+        recordRead: (key) => {
+            this.readPaths.add(key);
+        },
+        hasRead: (key) => this.readPaths.has(key),
+    };
     constructor(config, activityStore, emitEvent, log, probes = defaultProbeRegistry) {
         this.config = config;
         this.activityStore = activityStore;
@@ -34,8 +41,39 @@ export class ToolExecutor {
             toolCount: toolCalls.length,
             tools: toolCalls.map((tc) => tc.function.name),
         });
-        const toolContext = this.buildToolContext();
-        const results = await Promise.all(toolCalls.map((toolCall) => this.executeSingle(toolCall, toolContext)));
+        // One context per call so each execution can see its own
+        // `toolUseId`. The base context is built once; we spread + add
+        // per-call to keep allocations cheap.
+        const baseContext = this.buildToolContext();
+        // Respect each tool's `concurrencySafe` flag. Read-only tools
+        // (ls/grep/glob/…) run in parallel; tools that mutate shared state
+        // (edit/write/append/bash — `concurrencySafe: false`) are serialized in
+        // a single chain, so e.g. several `edit` calls to the SAME file in one
+        // turn apply one-after-another instead of racing read→modify→write
+        // (which let the last writer clobber the rest). Results are written by
+        // index to preserve the original tool-call order.
+        const results = new Array(toolCalls.length);
+        const parallel = [];
+        let serial = Promise.resolve();
+        toolCalls.forEach((toolCall, i) => {
+            const ctx = { ...baseContext, toolUseId: toolCall.id };
+            const run = async () => {
+                results[i] = await this.executeSingle(toolCall, ctx);
+            };
+            let input = {};
+            try {
+                input = JSON.parse(toolCall.function.arguments || '{}');
+            }
+            catch {
+                // non-JSON args → treat as unsafe (serialize), the conservative path
+            }
+            const safe = this.config.tools.get(toolCall.function.name)?.isConcurrencySafe?.(input) === true;
+            if (safe)
+                parallel.push(run());
+            else
+                serial = serial.then(run);
+        });
+        await Promise.all([...parallel, serial]);
         const messages = results.map((r) => createToolMessage(r.output, r.toolCallId));
         return { messages, results };
     }
@@ -53,11 +91,32 @@ export class ToolExecutor {
             },
             invocationState: this.config.invocationState,
             toolRegistry: this.config.tools,
+            allowedTools: this.config.allowedTools,
             sandbox: this.config.sandbox,
+            fileReadTracker: this.fileReadTracker,
         };
     }
     async executeSingle(toolCall, toolContext) {
         const toolName = toolCall.function.name;
+        if (toolCall.metadata?.inputTruncated === true) {
+            const message = truncatedToolInputMessage(toolName);
+            await this.emitEvent({
+                type: 'tool_executing',
+                runId: this.config.runId,
+                toolUseId: toolCall.id,
+                toolName,
+                input: {},
+            });
+            await this.emitEvent({
+                type: 'tool_completed',
+                runId: this.config.runId,
+                toolUseId: toolCall.id,
+                toolName,
+                result: message,
+                isError: true,
+            });
+            return { toolCallId: toolCall.id, output: message };
+        }
         let input;
         try {
             input = JSON.parse(toolCall.function.arguments);
@@ -166,7 +225,7 @@ export class ToolExecutor {
         const durationMs = Date.now() - startMs;
         const rawOutput = result.success
             ? result.output
-            : `Error: ${result.error ?? 'Tool execution failed'}`;
+            : formatFailedToolOutput(result.output, result.error);
         let output = result.success ? this.maybeCompress(toolName, rawOutput) : rawOutput;
         const postOverride = await this.runPostToolHook(toolName, input, result);
         if (postOverride !== null) {
@@ -324,4 +383,13 @@ export class ToolExecutor {
         return compressed;
     }
 }
+function formatFailedToolOutput(output, error) {
+    const errorText = `Error: ${error ?? 'Tool execution failed'}`;
+    if (!output || output.trim().length === 0)
+        return errorText;
+    return `${output}\n\n${errorText}`;
+}
+function truncatedToolInputMessage(toolName) {
+    return `Error: Tool "${toolName}" call was cut off while the model was streaming JSON arguments. The tool was NOT executed. Retry with a much shorter input. Self-budget any content/newStr payload under 12000 characters before calling file tools. For long files, create a short opening with write, then extend it with edit using insertLine: "end" in bounded section chunks; for delegated work, pass a shared workspace filename/reference instead of embedding the content in the tool call.`;
+}
 //# sourceMappingURL=executor.js.map

package/dist/runtime/query/executor.js.map

@@ -1 +1 @@
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package/dist/runtime/query/index.d.ts

@@ -3,6 +3,7 @@ import type { PathBuilder } from '../../session/workspace/path-builder.js';
 import type { AdvisoryConfig } from '../../types/advisory/index.js';
 import type { AgentRuntimeContext, RuntimeToolOverrides } from '../../types/agent/base.js';
 import type { AgentContextLevel } from '../../types/agent/factory.js';
+import type { WorkingMemoryProvider } from '../../types/agent/working-memory.js';
 import { type CheckpointId, type ResumeHandler } from '../../types/hitl/index.js';
 import type { RunId, SessionId, TenantId } from '../../types/ids/index.js';
 import type { InvocationState } from '../../types/invocation/index.js';
@@ -74,6 +75,14 @@ export interface QueryParams {
     taskRouter?: TaskRouterConfig;
     advisory?: AdvisoryConfig;
     compactionConfig?: CompactionConfig;
+    /**
+     * Optional neutral working-memory seam. When set, the iteration loop
+     * re-renders the provider's string into a single pinned leading system
+     * message every turn (the primacy-edge, compaction-preserved slot).
+     * Absent ⇒ `refreshWorkingMemory` early-returns and the run path is
+     * byte-identical.
+     */
+    workingMemoryProvider?: WorkingMemoryProvider;
     agentBus?: import('../../bus/index.js').AgentBus;
     verificationGate?: VerificationGateConfig;
     pluginManager?: import('../../plugin/lifecycle.js').PluginLifecycleManager;

package/dist/runtime/query/index.d.ts.map

@@ -1 +1 @@
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package/dist/runtime/query/index.js

@@ -14,6 +14,8 @@ import { RunContextFactory } from './context.js';
 import { EventTranslator } from './events.js';
 import { GuardCoordinator } from './guard.js';
 import { IterationOrchestrator } from './iteration/index.js';
+import { isCompactionMessage } from './iteration/phases/compaction.js';
+import { isWorkingMemoryMessage } from './iteration/phases/working-memory.js';
 import { applyLifecycleHookResults } from './plugin-hooks.js';
 import { PromptBuilder } from './prompt.js';
 import { ResultAssembler } from './result.js';
@@ -64,7 +66,15 @@ export async function* query(params) {
             },
         });
         if (decision.action === 'approve_plan') {
-            return { approved: true };
+            // Optional approve-with-edits channel: the host may attach
+            // feedback to an approval. `PlanApprovalResponse.feedback`
+            // already exists on the type; threading it through lets the
+            // coordinator's approve_plan tool surface the user's edits in
+            // the same tool_result that unblocks the park. Bare approvals
+            // stay byte-identical (`{ approved: true }`).
+            return decision.feedback
+                ? { approved: true, feedback: decision.feedback }
+                : { approved: true };
         }
         if (decision.action === 'reject_plan') {
             return { approved: false, feedback: decision.feedback };
@@ -96,6 +106,7 @@ export async function* query(params) {
             params.tools.register(SearchToolsTool);
         }
     }
+    const effectiveAllowedTools = withDeferredDiscoveryTool(params.tools, params.allowedTools);
     const toolExecutor = ToolingBootstrap.init({
         tools: params.tools,
         runId: ctx.runId,
@@ -103,6 +114,7 @@ export async function* query(params) {
         permissionMode: ctx.permissionMode,
         env: params.runConfig.env ?? {},
         abortSignal: ctx.abortController.signal,
+        allowedTools: effectiveAllowedTools,
         invocationState: params.invocationState,
         pluginManager: params.pluginManager,
     }, ctx.activityStore, eventTranslator.emitEvent, ctx.log);
@@ -117,7 +129,7 @@ export async function* query(params) {
         skills: params.skills,
         basePrompt: params.basePrompt,
         tools: params.tools,
-        allowedTools: params.allowedTools,
+        allowedTools: effectiveAllowedTools,
         runtimeContext: params.runtimeContext,
     });
     const guard = new GuardCoordinator({
@@ -159,13 +171,14 @@ export async function* query(params) {
         provider: params.provider,
         runConfig: params.runConfig,
         tools: params.tools,
-        allowedTools: params.allowedTools,
+        allowedTools: effectiveAllowedTools,
         taskGateway: params.taskGateway,
         taskStore: params.taskStore,
         launchedTasks: params.launchedTasks,
         advisoryCtx,
         compactionConfig: params.compactionConfig,
         workingStateManager,
+        workingMemoryProvider: params.workingMemoryProvider,
         agentBus: params.agentBus,
         verificationGate: verificationGate,
         pluginManager: params.pluginManager,
@@ -199,7 +212,7 @@ export async function* query(params) {
                 skills: params.skills,
                 basePrompt: contextLevel === 'full' ? params.basePrompt : undefined,
                 tools: params.tools,
-                allowedTools: params.allowedTools,
+                allowedTools: effectiveAllowedTools,
                 runtimeContext: params.runtimeContext,
             };
             const segments = params.contextCache
@@ -225,8 +238,18 @@ export async function* query(params) {
                 yield* eventTranslator.drainPending();
                 pushSystemMessages();
                 for (const msg of checkpoint.messages) {
-                    if (msg.role === 'system')
+                    if (msg.role === 'system') {
+                        // Re-push the FRESH static/dynamic floor (done above) but PRESERVE
+                        // the two system messages that carry irreplaceable run state: the
+                        // `[COMPACTED CONTEXT]` summary is the only surviving record of the
+                        // older history a compaction pass deleted, and the working-memory
+                        // slot pins the produced-artifact ledger. Dropping every system
+                        // message on restore silently lost both on resume.
+                        if (isCompactionMessage(msg.content) || isWorkingMemoryMessage(msg.content)) {
+                            ctx.runMgr.pushMessage(msg);
+                        }
                         continue;
+                    }
                     ctx.runMgr.pushMessage(msg);
                 }
             }
@@ -336,4 +359,18 @@ export async function drainQuery(params, listener) {
     }
     return result.value;
 }
+function withDeferredDiscoveryTool(tools, allowedTools) {
+    if (!allowedTools)
+        return undefined;
+    if (allowedTools.includes(SearchToolsTool.name))
+        return allowedTools;
+    const allowedHasDeferred = allowedTools.some((name) => tools.has(name) && tools.getAvailability(name) === 'deferred');
+    if (!allowedHasDeferred)
+        return allowedTools;
+    if (!tools.has(SearchToolsTool.name))
+        return allowedTools;
+    if (tools.getAvailability(SearchToolsTool.name) !== 'active')
+        return allowedTools;
+    return [...allowedTools, SearchToolsTool.name];
+}
 //# sourceMappingURL=index.js.map