@namzu/cli 26.3.0 → 27.0.0

package/CHANGELOG.md

@@ -1,5 +1,219 @@
 # @namzu/cli
 
+## 27.0.0
+
+### Major Changes
+
+- 518b0d3: Every turn the CLI starts keeps its newest 10 checkpoints instead of all of
+  them. That covers interactive turns, `namzu run`, resumed and drained turns,
+  and delegated child sessions. A turn takes a checkpoint every iteration plus
+  one per tool review, and nothing set a limit, so a long session kept every
+  one. On one machine that came to 19,014 checkpoint files and 6.33 GB.
+
+  **What changes for you.** Only the newest 10 checkpoint documents of each turn
+  stay in `<session-id>/checkpoints/`, and `namzu drain` reports at most that
+  many per turn. A checkpoint whose decision is still outstanding is never
+  pruned. Resuming is unaffected, because every resume reads the checkpoint it
+  was handed or the newest one. If you inspect intermediate checkpoints by hand,
+  copy them out while the turn is still going.
+
+- b064cea: **The OS sandbox is now off by default.** Shell commands and file tools run
+  on the host under the permission system, the way other coding agents run
+  them: each shell command goes through your permission rules and mode, and a
+  file tool's path outside the working directory and the added directories is
+  shown to you as an approval request (`Outside the working directory: <path>`)
+  instead of being refused. It is asked every time — `auto`, `--yolo`, `plan`
+  (for a read) and an earlier "allow all tools for this session" included —
+  while `strict` and a `deny` rule still refuse it. **A headless turn refuses it**: pass the
+  directory with `--add-dir` (or `additionalDirectories`) when an unattended run
+  needs it. Each answer is an audit record.
+
+  **To keep the previous behaviour** (every command confined), write
+  `sandbox.enabled: true` in `namzu.config.json` or `~/.namzu/config.yaml`. The
+  sandbox is also on, without that line, when `sandbox.requireIsolation` names a
+  control or `sandbox.workspace` is `ephemeral`. `sandbox.enabled: false` keeps
+  working as before.
+
+  With the sandbox on, a `bash` call may set `dangerously_disable_sandbox: true`
+  to run one command on the host. It is asked about every time, `auto` and
+  `--yolo` included (`plan` and `strict` refuse it); it is refused when nobody can
+  be asked, unless `sandbox.allowUnattendedEscape: true`; `sandbox.allowEscape:
+false` refuses it always. Each approval or refusal is an audit record.
+
+  `/add-dir` of a directory outside the working directory now asks before adding
+  it, deciding after links are followed (a link inside that points outside is
+  asked about under the path it leads to, and that canonical path is what is
+  added). A directory inside the working directory is no longer added: the tools
+  already reach it. The system prompt states where tools run and how to reach past that, and
+  on WSL where the Windows drives are and how to start a Windows program.
+
+- 7cac6dc: `#note` and `/memory add` now save a typed memory file instead of appending a bullet to `<project>/.namzu/MEMORY.md`.
+
+  What changes for you:
+
+  - **Where a note goes.** `#note <text>` and `/memory add <text>` write `<name>.md` (type `project`; `/memory add --type user|feedback|project|reference <text>` picks another) into the project's stored memory — `<NAMZU_HOME>/projects/<slug>/memory/` by default — the same files the model's `save_memory`, `search_memory` and `read_memory` use. The terminal names the file. `/memory --user add <text>` is unchanged and still appends to `~/.namzu/MEMORY.md`. To keep writing a note into the curated project file, edit `<project>/.namzu/MEMORY.md` directly; it is still read into every turn.
+  - **Old notes are copied only when you ask, and your file is never changed.** The project's curated `MEMORY.md` is not rewritten, at launch or ever: nothing can tell a bullet `#note` appended from one you wrote. When it holds top-level bullets, the launch says how many, once per curated file, and `/memory import-notes` copies every top-level bullet (its first line) into a typed `project` memory, skipping any already stored — by an earlier import, a `#note` with the same text, or a copy you archived — so running it twice creates no duplicates. The bullets stay curated text in every turn until you delete them from the file yourself.
+  - **A one-time move of the JSON store on first launch.** An earlier JSON memory store (`index.json` + `content/`) in the same directory is imported with its ids and renamed `*.migrated`; the launch says so. A record too large for a memory file (over 256 KiB) is not imported and is named, with the retired file that still holds it.
+  - **The prompt.** Every turn carries a `## Stored memories (index)` section — one line per memory you or the model saved, at most 200, your `feedback` and `user` memories first. What the session memory promoter (or `compaction.consolidate`) writes after a turn is searchable but not listed, so a turn's record does not change the next turn's system prompt — and the curated sections are renamed `## Curated memory (all projects)` and `## Curated memory (this project)` (they were `## Durable memory` and `## Project memory`). Anything that matched those headings in a captured prompt must match the new ones.
+  - **`/memory show`** lists stored memories' index lines before the curated files, and what turns recorded on their own in a separate `Recorded by turns (N)` section, so those records are visible even though the prompt's index leaves them out.
+  - **Note names are short.** A note's file is named after its first words, at most 32 characters, so its index line keeps room for the note itself.
+
+  Nothing in the CLI's library exports changed.
+
+- 3e7a97b: The CLI moves to the SDK's session → turn → message model and to one state
+  layout under `NAMZU_HOME` (default `~/.namzu`). Conversations, checkpoints,
+  memory and resident state written by 26.x are **not read** by this version.
+
+  **Before you upgrade.**
+
+  - **Run `namzu drain` on 26.x** until it reports nothing parked. A turn still
+    parked on a decision or a provider wait when you upgrade cannot be resumed.
+  - **Export any conversation you want to keep** with
+    `namzu history --session <id> > conversation.json` on 26.x (with no
+    `--session`, the latest one in the folder); it prints the messages as JSON.
+    There is no migration: nothing is imported, so nothing is lost silently or
+    brought back half-read.
+
+  ## What changes for you
+
+  - **Where state lives.** Each working directory gets
+    `~/.namzu/projects/<slug>/`, where the slug is the directory's canonical
+    path with every character outside `[A-Za-z0-9]` replaced by `-`. A session is
+    `<session-id>.jsonl` there, with its child sessions, checkpoints, tasks,
+    feedback, goals, tool-result spills and file-history snapshots under
+    `<session-id>/`. Memory moves to `projects/<slug>/memory/`, resident state to
+    `projects/<slug>/residents/`, and git worktrees to
+    `projects/<slug>/worktrees/`. `~/.namzu/index.sqlite` is an index rebuilt
+    from the logs whenever it is missing or out of date; deleting it loses
+    nothing. The CLI still never writes into the working directory; `.namzu/`
+    there is read only, for the agents, skills, commands, plugins and
+    `MEMORY.md` you put in it.
+  - **Old state is left alone and reported.** `namzu state` now prints report
+    `version: 2` with a `legacy` category: the old top-level `state/`,
+    `sessions/`, `titles.json`, `desktop-sessions.json`, `delegation-history/`,
+    `checkpoints/`, `tenants/`, `goals/`, `feedback/`, `learning/`,
+    `residents/`, `worktrees/` and `memory/`, and every `projects/<uuid>/`
+    directory. It lists their paths and sizes and never opens, moves or deletes
+    them; remove them yourself once you have exported what you need. A new
+    `projects/<slug>/` is never reported as legacy.
+  - **One turn at a time per session.** A session has at most one active turn.
+    `namzu run` and `namzu run-stream` against a session whose turn is still
+    running, paused or interrupted now exit **75** (EX_TEMPFAIL) and name that
+    turn: on stderr for `run`, as an NDJSON
+    `{"kind":"error","code":"turn_in_progress",…}` event for `run-stream`. 75
+    keeps its existing meaning for a provider pause too; a wrapper that already
+    retries later on 75 needs no change. In the TUI the refusal offers
+    `/resume` or the new **`/abandon`**, which closes the paused turn so the next
+    prompt can start.
+  - **A rate limit on the first request pauses the turn.** A provider rate
+    limit or outage on a turn's first request used to fail it (`namzu run`
+    exit 1) with nothing to continue; it now pauses it at a checkpoint like the
+    same fault later in the turn: `namzu run` exits 75 naming the checkpoint,
+    `--wait-for-provider` waits and resumes it, and `/resume` or `namzu drain`
+    continues it.
+  - **`/agents runs` is now `/agents batches`**, with no alias. `/agents runs`
+    prints the unknown-subcommand usage.
+  - **NDJSON gains ids.** `run-stream`'s `done` and `usage` events carry
+    `sessionId` and `turnId`, and a `paused` event names its `turnId` instead
+    of a run id.
+  - **Hooks.** The events `run_start`, `run_end` and `run_interrupt` are
+    `turn_start`, `turn_end` and `turn_interrupt`; a config that names an old
+    event is refused at load with a message naming the new one. A hook's stdin
+    carries `turn_id` (not `run_id`) and, on `subagent_stop`,
+    `parent_session_id` and `parent_turn_id` (not `parent_run_id`); its
+    environment carries `NAMZU_TURN_ID` (not `NAMZU_RUN_ID`). `session_id` and
+    `NAMZU_SESSION_ID` are always set. `session_start` and `session_end` hooks
+    receive no turn id: the CLI no longer invents one for them.
+  - **`namzu drain`** keeps its flag names and exit codes (0, 1, 64, 77), but
+    `--store` means something else: it was the `runs/` directory a checkpoint
+    store wrote to, and it is now the namzu home (`NAMZU_HOME`, `~/.namzu` by
+    default) whose `projects/` hold the session logs. A `--store` without a
+    `projects/` directory is refused with 64, so a wrapper that still passes its
+    old `runs/` path must pass the home instead. A scope the store does not hold
+    (an unknown session, one under another project or tenant, a child session)
+    is also 64; state that cannot be read is 1. It finds parked turns through
+    the session index, takes each session's lease, and continues the same turn
+    from its checkpoint; a turn whose session lease another worker holds is
+    skipped and reported.
+  - **Delegation history is not carried over.** The history block and
+    `/agents` read finished child sessions from their logs; children recorded by
+    26.x do not appear.
+  - **Checkpoints.** A session keeps each turn's newest 10 checkpoints under
+    `<session-id>/checkpoints/`; one an open decision references is never
+    pruned. `/restore` snapshots are under `<session-id>/file-history/`.
+  - **Crash dumps are gone.** The session log and per-iteration checkpoints hold
+    everything an interrupted turn needs, so no `emergency/` dumps are written.
+    An interactive session that was interrupted closes that turn as interrupted
+    when you send the next prompt.
+  - **A stopped process gives its conversation back.** On SIGTERM, SIGHUP (a
+    closed terminal) or SIGINT, the TUI, `namzu run` and `namzu run-stream`
+    release the conversation's writer lease first, then stop the turn, close
+    the session (tool servers, background jobs, the `session_end` hook) and give
+    the terminal back, and then die of the signal they were sent: a wrapper
+    sees 143, 129 or 130 as before. The turn is left interrupted, so `/abandon`,
+    `/resume`, `namzu drain` or the TUI's next prompt take it at once; before,
+    they were refused as "leased by a live writer" for up to five minutes. A
+    second signal exits immediately. `run-stream` writes
+    `{"kind":"error","code":"terminated",…}` and a final `done` before it exits,
+    and `run` names the session on stderr. SIGKILL still leaves the lease to
+    expire. The message follows where the signal found the turn: a turn that
+    had already ended (the session still closing) is reported as recorded, not
+    interrupted, and `run-stream`'s one `done` is then the turn's own; a
+    `run --wait-for-provider` stopped during its wait says the turn is paused
+    at its checkpoint, and does not resume it.
+
+### Patch Changes
+
+- 96ac3ec: A session never writes generated state into its working directory, and a
+  session started in the home directory no longer reads the same memory file
+  twice.
+
+  Every entry point — `namzu`, `namzu run`, `namzu run-stream`, `namzu drain`
+  and resident runs — keeps its sessions, memory and task state under the
+  application home (`NAMZU_HOME`, else `~/.namzu`), in the working directory's
+  `projects/<slug>/`, and files them under that directory's one Project.
+  `<cwd>/.namzu` is only read, for the agents, skills, commands, plugins and
+  `MEMORY.md` you keep there.
+
+  Started in `$HOME` with no `NAMZU_HOME`, the project's `.namzu/MEMORY.md` and
+  the user's `~/.namzu/MEMORY.md` are one file. It was injected into every
+  prompt twice, under both headings. It is now read once, as the user memory.
+
+- 3641102: The turn-start repository snapshot (`git status` and recent commits, sent on a
+  send's first request) now reaches the model as request-only context after the
+  conversation, not as a system message. On Anthropic, each new send used to
+  change the system prompt and re-read the whole conversation uncached. Now the
+  cached conversation is kept and only the snapshot's own tokens are new.
+
+  What the model reads changes in two ways: the snapshot arrives in a user-role
+  message rather than a system message, and it follows the line
+  `Current step context (runtime-generated; not a new user request):`, which
+  every request-only context message opens with. The snapshot text itself is
+  unchanged.
+
+- Updated dependencies [8805360]
+- Updated dependencies [a729b17]
+- Updated dependencies [9355755]
+- Updated dependencies [755a81a]
+- Updated dependencies [cb1f00c]
+- Updated dependencies [3641102]
+- Updated dependencies [933ba6d]
+- Updated dependencies [3e7a97b]
+- Updated dependencies [a84dc1c]
+- Updated dependencies [b064cea]
+- Updated dependencies [9238347]
+- Updated dependencies [a14b013]
+- Updated dependencies [3641102]
+- Updated dependencies [3641102]
+- Updated dependencies [3e43fc2]
+  - @namzu/sdk@44.0.0
+  - @namzu/anthropic@6.0.1
+  - @namzu/openrouter@3.0.1
+  - @namzu/zen@2.4.0
+  - @namzu/computer-use@1.4.3
+  - @namzu/ollama@2.2.4
+  - @namzu/openai@4.0.0
+
 ## 26.3.0
 
 ### Minor Changes

package/README.md

@@ -112,27 +112,30 @@ once in PowerShell or Git Bash using the Node installation that owns Namzu.
 For a custom global prefix, include `--prefix "<existing-prefix>"`. Restart
 Namzu afterward; the updated CLI includes the corrected npm launcher.
 
-Generated CLI state now lives below the application home: `~/.namzu` by
-default, or the existing real directory named by `NAMZU_HOME`. New directories
-inside the same checkout share one Project, keyed by its canonical root; a
-standalone directory is its own project. Worktrees and nested repositories
-remain separate. Existing central bindings for individual subdirectories keep
-their own histories. Bash, Write and Edit still use the selected working
-directory while transcripts, runs, memory and tasks live centrally. A local
-`.namzu` holds authored `commands`, `plugins`, `skills` and `MEMORY.md`.
-Older project-local runtime and global `cli.json` pointers are inventory data;
-the CLI does not automatically adopt or migrate them. See
-[Project and session state](../../docs/cli/project-state.md) for identity and
-compatibility details.
-
-`namzu state` inventories the current workspace's legacy `.namzu` tree and the
-resolved application-home tree without loading either config cascade or
-changing either tree. It reports authored/configuration/runtime/control bytes, canonical
-sessions and runs, raw checkpoint and emergency-save files, attachment pairs,
-privacy boundaries, and project binding health. JSON and YAML use the global
-`--format` flag. The snapshot is best-effort and unlocked: origin-only sessions
-are candidates for investigation, never an automatic deletion claim, and the
-command does not repair, move, chmod, or delete anything.
+Generated CLI state lives below the application home: `~/.namzu` by default,
+or the existing real directory named by `NAMZU_HOME`. Each working directory
+gets `projects/<slug>/`, where the slug is its canonical path with every
+character outside `[A-Za-z0-9]` replaced by `-`; a project id is minted once
+into `projects/<slug>/project.json`. A session is one append-only log,
+`projects/<slug>/<session-id>.jsonl`, with its child sessions, checkpoints,
+tasks and file-history snapshots under `<session-id>/`; memory, resident state
+and worktrees are under `projects/<slug>/` too. `~/.namzu/index.sqlite` is an
+index rebuilt from the logs, so deleting it loses nothing. Bash, Write and
+Edit still use the selected working directory, and nothing generated is
+written there: a local `.namzu` holds only the `agents`, `commands`,
+`plugins`, `skills` and `MEMORY.md` you author. See
+[Session storage](../../docs/cli/session-storage.md) for the layout and
+[Project and session state](../../docs/cli/project-state.md) for identity.
+
+`namzu state` inventories the application-home tree without loading a config
+cascade or changing anything. It reports authored/configuration/runtime/control
+bytes, sessions and turns, checkpoint files, attachment pairs, privacy
+boundaries and project health, and a `legacy` category (report `version: 2`)
+listing state an earlier CLI wrote — the old top-level `sessions/`, `state/`,
+`checkpoints/` and similar directories, and every `projects/<uuid>/` — which
+this version never reads. JSON and YAML use the global `--format` flag. The
+snapshot is best-effort and unlocked, and the command does not repair, move,
+chmod, or delete anything.
 
 Desktop control is separate from attaching a clipboard image. Ctrl+V/Alt+V
 adds an image to the current prompt; the TUI's `computer_use` tool lets the
@@ -202,7 +205,7 @@ provider/model flags work with `run-stream`.
 The picker lists each service's supported models from the provider catalogue;
 an explicit model selection is saved using the existing preferences flow.
 Go requests carry the actual Namzu conversation ID in `x-opencode-session`,
-stable across turns and resumed runs. Delegated work shares its invoking
+stable across turns and resumed turns. Delegated work shares its invoking
 conversation's upstream session; switching conversations changes that ID.
 
 Bare `/help` opens the session's complete command vocabulary as a keyboard
@@ -324,16 +327,25 @@ session. In particular, `sandbox yes` describes the local runtime provider that
 will execute tools; it is independent of the optional-package installation row
 reported by `namzu doctor`.
 
-The coding session defaults that provider to the canonical working directory.
+Tools run on the host under the permission system by default: each shell
+command goes through the permission rules and mode, and a file tool's path
+outside the working directory is an approval request rather than a refusal —
+asked every time (`strict` refuses it, `plan` asks only for a read), and
+refused when nobody can be asked (add the directory with `--add-dir` instead). The OS sandbox is opt-in with `sandbox.enabled: true`; a sandboxed `bash` call
+may ask to run one command outside it, and that request is put to you every
+time (`plan` and `strict` refuse it), and refused when nobody can be asked. See
+`docs/cli/tool-boundary.md`.
+
+With the sandbox on, the provider defaults to the canonical working directory.
 Each turn owns and tears down a fresh sandbox handle, while the caller-owned
 project files survive and remain visible to later turns and delegated agents.
-Set `sandbox.workspace` to `ephemeral` only when a disposable per-run tree is
+Set `sandbox.workspace` to `ephemeral` only when a disposable per-turn tree is
 the intended behavior; `/status` reports which mode is active.
 
-The default sandbox exposes Bash as a foreground, serialized operation. It does
-not advertise the background-job tool or a `run_in_background` input that the
-sandbox cannot preserve. Use delegated agents for independent concurrent work;
-turning the sandbox off restores the host background-job capability.
+A sandbox that cannot start a detached process exposes Bash as a foreground,
+serialized operation and refuses `run_in_background`. Use delegated agents for
+independent concurrent work; host execution keeps the background-job
+capability.
 
 Ctrl+L clears only the rendered terminal transcript while idle. It preserves
 model context, durable conversation history and copy/export targets; an active
@@ -344,8 +356,8 @@ Bare `/export` opens a destination chooser for the complete verified Markdown
 conversation. Copy to clipboard sends one bounded terminal request and reports
 that the request may be ignored by terminal policy; Save to file opens a
 prefilled filename editor and never overwrites an existing file. `/export <path>`
-remains the direct file shortcut. Both routes read the durable turn/run
-evidence rather than reconstructing source from the painted transcript.
+remains the direct file shortcut. Both routes read the session log rather than
+reconstructing source from the painted transcript.
 
 Repository policy stays live for the whole session. The CLI starts with the
 applicable `AGENTS.md` chain, discovers nested instruction files after
@@ -360,7 +372,7 @@ both scopes. Project plugins are not read before the project trust gate, and
 plugin paths are canonicalized against the trusted project or user-home root;
 links that leave that scope and symlinked manifests are refused. Plugin
 settings cannot be activated by an environment-selected profile. The
-same plugin hooks and skills reach interactive turns, headless runs, durable
+same plugin hooks and skills reach interactive turns, headless turns, durable
 resumes, and ACP sessions; session shutdown settles live work before unloading
 them.
 
@@ -368,13 +380,16 @@ them.
 
 ```bash
 namzu run "fix the failing test" --format json
-namzu run-stream "refactor the parser" | jq -c 'select(.type == "tool_call")'
+namzu run-stream "refactor the parser" | jq -c 'select(.kind == "tool-start")'
 ```
 
 `run` prints a result; `run-stream` emits one structured event per line as the
-run happens, so a script can act on a tool call before the run is over. Both
+turn happens, so a script can act on a tool call before the turn is over. Both
 take `--verbose`/`--quiet`, and both write logs to stderr so stdout stays a
-clean protocol stream.
+clean protocol stream. A session has one active turn at a time: either command
+aimed at a session whose turn is still running or paused exits 75 and names
+that turn. See [Exit codes](../../docs/cli/run-exit-codes.md) and
+[`run-stream`](../../docs/cli/run-stream.md).
 
 Recoverable provider stops are explicit `paused` events carrying their
 checkpoint and any structured retry guidance. The interactive transcript shows

package/dist/bin.js

@@ -3,14 +3,21 @@ import { fileURLToPath } from 'node:url';
 import { runCli } from './cli.js';
 import { EXIT_INTERNAL_ERROR } from './exit-codes.js';
 import { resumeInvocation } from './resume-invocation.js';
+import { terminationInProgress } from './termination.js';
 // Preserve source loaders and alternate installations when the public command differs.
 const entrypoint = fileURLToPath(import.meta.url);
 runCli({
     argv: process.argv,
     resumeCommand: resumeInvocation(entrypoint),
 }).then((code) => {
+    // A command stopped by a signal can return while its handler is still
+    // giving the conversation back; the handler ends the process.
+    if (terminationInProgress() !== null)
+        return;
     process.exit(code);
 }, (err) => {
+    if (terminationInProgress() !== null)
+        return;
     process.stderr.write(`Fatal: ${err instanceof Error ? (err.stack ?? err.message) : String(err)}\n`);
     process.exit(EXIT_INTERNAL_ERROR);
 });

package/dist/bin.js.map

@@ -1 +1 @@
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+{"version":3,"file":"bin.js","sourceRoot":"","sources":["../src/bin.ts"],"names":[],"mappings":";AAEA,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAExC,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA;AACjC,OAAO,EAAE,mBAAmB,EAAE,MAAM,iBAAiB,CAAA;AACrD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAA;AACzD,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAA;AAExD,uFAAuF;AACvF,MAAM,UAAU,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;AACjD,MAAM,CAAC;IACN,IAAI,EAAE,OAAO,CAAC,IAAI;IAClB,aAAa,EAAE,gBAAgB,CAAC,UAAU,CAAC;CAC3C,CAAC,CAAC,IAAI,CACN,CAAC,IAAI,EAAE,EAAE;IACR,sEAAsE;IACtE,8DAA8D;IAC9D,IAAI,qBAAqB,EAAE,KAAK,IAAI;QAAE,OAAM;IAC5C,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;AACnB,CAAC,EACD,CAAC,GAAG,EAAE,EAAE;IACP,IAAI,qBAAqB,EAAE,KAAK,IAAI;QAAE,OAAM;IAC5C,OAAO,CAAC,MAAM,CAAC,KAAK,CACnB,UAAU,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,IAAI,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAC7E,CAAA;IACD,OAAO,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAA;AAClC,CAAC,CACD,CAAA"}

package/dist/checkpoints/store.d.ts

@@ -6,7 +6,7 @@
  * Not git. A checkpoint is taken by the tool wrapper immediately before an
  * `edit` or `write` runs, whatever the repository's state, and it records
  * absence too, so a file the model created is removed on restore. Kept per
- * session under the project's private state and dropped when the session
+ * session in its `<session-id>/file-history/` directory and dropped when the session
  * closes: a checkpoint outlives a turn, not a session — the conversation
  * can be forked and resumed, and its files are the working tree's.
  */
@@ -30,18 +30,31 @@ export interface RestoreReport {
 /** Files larger than this are not snapshotted; the transcript says so. */
 export declare const CHECKPOINT_MAX_BYTES: number;
 export declare class FileCheckpointStore {
-    /** Where blobs go, e.g. `<state>/checkpoints/<sessionId>`. */
+    /**
+     * Where blobs go: the session's `file-history/` (`SessionPaths.fileHistory`).
+     * A function is read at each turn's first snapshot, so a store that
+     * outlives a conversation switch (`/resume`, `/new`) writes into the
+     * conversation the turn belongs to, not the one the process started in.
+     */
     private readonly root;
     /** Only files under here are checkpointed. */
     private readonly cwd;
     private readonly turns;
     private current;
     private readonly skipped;
+    /** Every `file-history/` a blob was written under, so closing drops them all. */
+    private readonly roots;
     constructor(
-    /** Where blobs go, e.g. `<state>/checkpoints/<sessionId>`. */
-    root: string, 
+    /**
+     * Where blobs go: the session's `file-history/` (`SessionPaths.fileHistory`).
+     * A function is read at each turn's first snapshot, so a store that
+     * outlives a conversation switch (`/resume`, `/new`) writes into the
+     * conversation the turn belongs to, not the one the process started in.
+     */
+    root: string | (() => string), 
     /** Only files under here are checkpointed. */
     cwd: string);
+    private currentRoot;
     /** The next tool write belongs to this turn. Returns its index. */
     beginTurn(label: string): number;
     /** Whether a host path is one this store would checkpoint. */

package/dist/checkpoints/store.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"store.d.ts","sourceRoot":"","sources":["../../src/checkpoints/store.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAGH,OAAO,EAAgD,GAAG,EAAE,MAAM,WAAW,CAAA;AAE7E,MAAM,WAAW,cAAc;IAC9B,yCAAyC;IACzC,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAA;IACtB,uDAAuD;IACvD,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAA;IACtB,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAA;IAC1B,+DAA+D;IAC/D,QAAQ,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,CAAA;CACjC;AAiBD,MAAM,WAAW,aAAa;IAC7B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAA;IACrB,oDAAoD;IACpD,QAAQ,CAAC,QAAQ,EAAE,SAAS,MAAM,EAAE,CAAA;IACpC,gEAAgE;IAChE,QAAQ,CAAC,OAAO,EAAE,SAAS,MAAM,EAAE,CAAA;CACnC;AAED,0EAA0E;AAC1E,eAAO,MAAM,oBAAoB,QAAkB,CAAA;AAGnD,qBAAa,mBAAmB;IAS9B;;;;;OAKG;IACH,OAAO,CAAC,QAAQ,CAAC,IAAI;IACrB,8CAA8C;IAC9C,OAAO,CAAC,QAAQ,CAAC,GAAG;IAhBrB,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAa;IACnC,OAAO,CAAC,OAAO,CAAkB;IACjC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAoB;IAE5C,iFAAiF;IACjF,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAoB;;IAGzC;;;;;OAKG;IACc,IAAI,EAAE,MAAM,GAAG,CAAC,MAAM,MAAM,CAAC;IAC9C,8CAA8C;IAC7B,GAAG,EAAE,MAAM;IAG7B,OAAO,CAAC,WAAW;IAInB,mEAAmE;IACnE,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM;IAYhC,8DAA8D;IAC9D,MAAM,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO;IAKjC;;;;OAIG;IACG,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,GAAG,SAAS,GAAG,SAAS,GAAG,WAAW,CAAC;IA6B3F,4CAA4C;IAC5C,IAAI,IAAI,SAAS,cAAc,EAAE;IAWjC,oFAAoF;IACpF,YAAY,IAAI,SAAS,MAAM,EAAE;IAIjC;;;;OAIG;IACG,OAAO,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,CAAC;IAiCpD,4CAA4C;IACtC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAM5B,+EAA+E;IAC/E,OAAO,CAAC,iBAAiB;CAIzB;AAOD,+CAA+C;AAC/C,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,SAAS,cAAc,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,CAYvF;AAED,gCAAgC;AAChC,wBAAgB,aAAa,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,CAMxE;AAED,OAAO,EAAE,GAAG,IAAI,cAAc,EAAE,CAAA"}

package/dist/checkpoints/store.js

@@ -6,7 +6,7 @@
  * Not git. A checkpoint is taken by the tool wrapper immediately before an
  * `edit` or `write` runs, whatever the repository's state, and it records
  * absence too, so a file the model created is removed on restore. Kept per
- * session under the project's private state and dropped when the session
+ * session in its `<session-id>/file-history/` directory and dropped when the session
  * closes: a checkpoint outlives a turn, not a session — the conversation
  * can be forked and resumed, and its files are the working tree's.
  */
@@ -21,14 +21,24 @@ export class FileCheckpointStore {
     turns = [];
     current;
     skipped = new Set();
+    /** Every `file-history/` a blob was written under, so closing drops them all. */
+    roots = new Set();
     constructor(
-    /** Where blobs go, e.g. `<state>/checkpoints/<sessionId>`. */
+    /**
+     * Where blobs go: the session's `file-history/` (`SessionPaths.fileHistory`).
+     * A function is read at each turn's first snapshot, so a store that
+     * outlives a conversation switch (`/resume`, `/new`) writes into the
+     * conversation the turn belongs to, not the one the process started in.
+     */
     root, 
     /** Only files under here are checkpointed. */
     cwd) {
         this.root = root;
         this.cwd = cwd;
     }
+    currentRoot() {
+        return typeof this.root === 'function' ? this.root() : this.root;
+    }
     /** The next tool write belongs to this turn. Returns its index. */
     beginTurn(label) {
         const index = this.turns.length + 1;
@@ -74,7 +84,9 @@ export class FileCheckpointStore {
         }
         let blob = null;
         if (content !== null) {
-            const dir = join(this.root, String(turn.index));
+            const dir = turn.dir ?? join(this.currentRoot(), String(turn.index));
+            turn.dir = dir;
+            this.roots.add(dirname(dir));
             await mkdir(dir, { recursive: true });
             blob = join(dir, `${turn.entries.length}.blob`);
             await writeFile(blob, content);
@@ -131,14 +143,17 @@ export class FileCheckpointStore {
         // tree no longer builds on.
         const dropped = this.turns.splice(this.turns.findIndex((t) => t.index === index));
         for (const turn of dropped) {
-            await rm(join(this.root, String(turn.index)), { recursive: true, force: true });
+            if (turn.dir)
+                await rm(turn.dir, { recursive: true, force: true });
         }
         this.current = undefined;
         return { turn: index, restored: [...restored], removed: [...removed] };
     }
     /** Drop every blob. The session is over. */
     async close() {
-        await rm(this.root, { recursive: true, force: true });
+        for (const root of new Set([...this.roots, this.currentRoot()])) {
+            await rm(root, { recursive: true, force: true });
+        }
     }
     /** A write outside any turn — a host command, say — gets a turn of its own. */
     turnForStrayWrite() {

package/dist/checkpoints/store.js.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -183,7 +183,7 @@ export async function runCli(opts) {
         return recoveryCtx;
     };
     // Stopping or inspecting a resident must remain possible with broken config.
-    // Its run action resolves this bridge only after trusting the bound cwd.
+    // Its turn action resolves this bridge only after trusting the bound cwd.
     const getResidentContext = () => bindTrustedProjectContext(getRecoveryContext(), getTrustedContext);
     for (const def of [
         acpCommand,
@@ -260,7 +260,7 @@ export async function runCli(opts) {
                     ...(resolvedCtx.config.sandbox ? { sandbox: resolvedCtx.config.sandbox } : {}),
                     // `!== undefined`, never `??`: an empty list is the operator
                     // switching the screens off, and it is the answer this key
-                    // exists for. A truthiness test would drop it and the run
+                    // exists for. A truthiness test would drop it and the turn
                     // would install the kernel default instead — the opposite
                     // of what was asked for, in the one case the operator was
                     // explicit about.