@nairon-ai/aegis 0.6.0 → 0.6.2

package/dist-node/server/app.js

@@ -1,7 +1,7 @@
 import { Hono } from "hono";
 import { startImplementationRun, startPlanRun } from "../agent/client.js";
 import { pickupReadyBugs, scanReadyBugs } from "../core/pickup.js";
-import { listRunSnapshots } from "../core/runs.js";
+import { listRunSnapshots, recoverStaleRuns } from "../core/runs.js";
 import { GitHubClient } from "../integrations/github.js";
 import { LinearClient } from "../integrations/linear.js";
 import { parseAegisCommand, parseTelegramUpdate, sendTelegramMessage, } from "../integrations/telegram.js";
@@ -10,6 +10,8 @@ import { configFromBindings } from "../shared/config.js";
 import { formatReadyDecisionLine } from "../shared/format.js";
 import { runFromItem } from "../shared/run-state.js";
 import { sourceFor } from "../sources/index.js";
+const DEFAULT_PLAN_TIMEOUT_MINUTES = 12;
+const DEFAULT_STALE_RUN_MINUTES = 20;
 export function createAegisApp(options = {}) {
     const app = new Hono();
     app.get("/", (c) => {
@@ -34,6 +36,9 @@ export function createAegisApp(options = {}) {
     });
     app.post("/api/pickup", async (c) => {
         const config = { ...configFromBindings(c.env), workerUrl: new URL(c.req.url).origin };
+        const recovered = await recoverStaleRuns(config, {
+            olderThanMinutes: staleRunMinutes(c.env),
+        });
         const decisions = await pickupReadyBugs({
             config,
             startRun: async (item, run, decision) => {
@@ -41,6 +46,7 @@ export function createAegisApp(options = {}) {
             },
         });
         return c.json({
+            recovered: recovered.filter((result) => result.status === "blocked"),
             count: decisions.length,
             decisions: decisions.map((decision) => ({
                 source: decision.item.source,
@@ -60,6 +66,13 @@ export function createAegisApp(options = {}) {
         const all = c.req.query("all") === "true";
         return c.json({ runs: await listRunSnapshots(config, { all }) });
     });
+    app.post("/api/runs/recover", async (c) => {
+        const config = { ...configFromBindings(c.env), workerUrl: new URL(c.req.url).origin };
+        const results = await recoverStaleRuns(config, {
+            olderThanMinutes: staleRunMinutes(c.env),
+        });
+        return c.json({ results });
+    });
     app.get("/api/runs/:id/peek", async (c) => {
         if (!options.peekSandbox)
             return c.json({ error: "sandbox peek is not available" }, 501);
@@ -143,6 +156,11 @@ export function createAegisApp(options = {}) {
 }
 export async function scheduledPickup(_controller, env, ctx, callAgent) {
     const config = configFromBindings(env);
+    const recovered = await recoverStaleRuns(config, { olderThanMinutes: staleRunMinutes(env) });
+    const blocked = recovered.filter((result) => result.status === "blocked");
+    if (blocked.length) {
+        console.log(`[aegis] recovered ${blocked.length} stale run(s)`);
+    }
     const decisions = await pickupReadyBugs({
         config,
         startRun: async (item, run, decision) => {
@@ -167,12 +185,28 @@ async function handleCommand(env, command, item, callAgent, ctx) {
 async function startPlanSafely(env, item, run, decision, workerUrl, callAgent, ctx) {
     const baseConfig = configFromBindings(env);
     const config = { ...baseConfig, workerUrl: baseConfig.workerUrl ?? workerUrl };
+    const abortController = new AbortController();
+    const timeoutMinutes = planTimeoutMinutes(env);
     try {
-        await startPlanRun({ config, item, run, decision, callAgent, env, ctx });
+        await withTimeout(startPlanRun({
+            config,
+            item,
+            run,
+            decision,
+            callAgent,
+            env,
+            ctx,
+            signal: abortController.signal,
+        }), timeoutMinutes * 60_000, () => abortController.abort());
     }
     catch (error) {
-        const message = error instanceof Error ? error.message : String(error);
+        const message = error instanceof Error && error.name === "AegisTimeoutError"
+            ? `Timed out after ${timeoutMinutes} minutes while waiting for the RCA.`
+            : error instanceof Error
+                ? error.message
+                : String(error);
         await sourceFor(config, item.source).markBlocked(item, `Aegis failed to run: ${message}`);
+        await sendTelegramMessage(config, `Aegis stopped ${item.identifier}: ${message}\n\nRun: ${run.id}\nTicket: ${item.url}`);
     }
 }
 async function pickupFromWebhook(env, origin, callAgent, ctx) {
@@ -228,6 +262,38 @@ async function stopRun(env, runId, item) {
     const resolved = item ?? (await resolveItemFromRunId(config, runId));
     await sourceFor(config, resolved.source).markBlocked(resolved, `Aegis run ${runId} was stopped.`);
 }
+async function withTimeout(promise, timeoutMs, onTimeout) {
+    let timeout;
+    try {
+        return await Promise.race([
+            promise,
+            new Promise((_resolve, reject) => {
+                timeout = setTimeout(() => {
+                    onTimeout();
+                    const error = new Error("Aegis run timed out");
+                    error.name = "AegisTimeoutError";
+                    reject(error);
+                }, timeoutMs);
+            }),
+        ]);
+    }
+    finally {
+        if (timeout)
+            clearTimeout(timeout);
+    }
+}
+function planTimeoutMinutes(env) {
+    return parsePositiveInteger(env.AEGIS_PLAN_TIMEOUT_MINUTES, DEFAULT_PLAN_TIMEOUT_MINUTES);
+}
+function staleRunMinutes(env) {
+    return parsePositiveInteger(env.AEGIS_STALE_RUN_MINUTES, DEFAULT_STALE_RUN_MINUTES);
+}
+function parsePositiveInteger(value, fallback) {
+    if (!value)
+        return fallback;
+    const parsed = Number.parseInt(value, 10);
+    return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;
+}
 async function resolveItemFromRunId(config, runId) {
     const match = runId.match(/^gh-.+-(\d+)$/);
     if (match) {

package/dist-node/server/app.js.map

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package/dist-node/shared/types.d.ts

@@ -57,6 +57,11 @@ export type RunSnapshot = {
 export type SandboxPeekResult = {
     runId: string;
     checkedAt: string;
+    status: {
+        exitCode: number;
+        stdout: string;
+        stderr: string;
+    };
     workspace: {
         exitCode: number;
         stdout: string;
@@ -187,6 +192,8 @@ export type Bindings = {
     AUTOMATION_MODE?: AutomationMode;
     CONTEXT_PROFILE?: ContextProfile;
     MAX_CONCURRENT_RUNS?: string;
+    AEGIS_PLAN_TIMEOUT_MINUTES?: string;
+    AEGIS_STALE_RUN_MINUTES?: string;
     READY_LABEL?: string;
     BUG_LABEL?: string;
     IN_PROGRESS_LABEL?: string;

package/dist-node/shared/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/shared/types.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAEnD,MAAM,MAAM,UAAU,GAAG,QAAQ,GAAG,QAAQ,CAAC;AAE7C,MAAM,MAAM,cAAc,GAAG,YAAY,GAAG,eAAe,CAAC;AAE5D,MAAM,MAAM,cAAc,GAAG,SAAS,GAAG,YAAY,CAAC;AAEtD,MAAM,MAAM,eAAe,GAAG,eAAe,GAAG,gBAAgB,CAAC;AAEjE,MAAM,MAAM,cAAc,GACvB,OAAO,GACP,YAAY,GACZ,SAAS,GACT,UAAU,GACV,mBAAmB,GACnB,cAAc,GACd,WAAW,GACX,SAAS,GACT,QAAQ,GACR,WAAW,CAAC;AAEf,MAAM,MAAM,SAAS,GAAG,KAAK,GAAG,QAAQ,GAAG,MAAM,CAAC;AAElD,MAAM,MAAM,QAAQ,GAAG;IACtB,MAAM,EAAE,UAAU,CAAC;IACnB,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,MAAM,CAAC,EAAE,MAAM,CAAC;CAChB,CAAC;AAEF,MAAM,MAAM,iBAAiB,GAC1B;IACA,KAAK,EAAE,IAAI,CAAC;IACZ,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,SAAS,CAAC;IAChB,oBAAoB,EAAE,OAAO,CAAC;CAC7B,GACD;IACA,KAAK,EAAE,KAAK,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;CAChB,CAAC;AAEL,MAAM,MAAM,OAAO,GAAG;IACrB,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,UAAU,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,cAAc,CAAC;IACvB,IAAI,EAAE,cAAc,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,WAAW,CAAC,EAAE,MAAM,CAAC;CACrB,CAAC;AAEF,MAAM,MAAM,WAAW,GAAG;IACzB,GAAG,EAAE,OAAO,CAAC;IACb,IAAI,EAAE,QAAQ,CAAC;IACf,aAAa,EAAE,MAAM,CAAC;CACtB,CAAC;AAEF,MAAM,MAAM,iBAAiB,GAAG;IAC/B,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE;QACP,QAAQ,EAAE,MAAM,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;KACf,CAAC;IACF,SAAS,EAAE;QACV,QAAQ,EAAE,MAAM,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;KACf,CAAC;IACF,GAAG,EAAE;QACJ,QAAQ,EAAE,MAAM,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;KACf,CAAC;IACF,SAAS,EAAE;QACV,QAAQ,EAAE,MAAM,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;KACf,CAAC;CACF,CAAC;AAEF,MAAM,MAAM,MAAM,GAAG;IACpB,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,UAAU,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;CAChB,CAAC;AAEF,MAAM,MAAM,YAAY,GAAG,MAAM,GAAG,WAAW,CAAC;AAEhD,MAAM,MAAM,eAAe,GAAG;IAC7B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,YAAY,CAAC;IACtB,IAAI,EAAE,cAAc,CAAC;IACrB,cAAc,EAAE,cAAc,CAAC;IAC/B,IAAI,EAAE,QAAQ,CAAC;IACf,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE;QACZ,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,YAAY,CAAC,EAAE,MAAM,CAAC;QACtB,kBAAkB,EAAE,MAAM,CAAC;KAC3B,CAAC;IACF,QAAQ,CAAC,EAAE;QACV,UAAU,EAAE,MAAM,CAAC;QACnB,UAAU,EAAE,MAAM,CAAC;KACnB,CAAC;CACF,CAAC;AAEF,MAAM,MAAM,eAAe,GAAG;IAC7B,OAAO,EAAE,mBAAmB,GAAG,YAAY,GAAG,SAAS,CAAC;IACxD,UAAU,EAAE,KAAK,GAAG,QAAQ,GAAG,MAAM,CAAC;IACtC,IAAI,EAAE,SAAS,CAAC;IAChB,gBAAgB,EAAE,MAAM,CAAC;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,gBAAgB,EAAE,OAAO,CAAC;CAC1B,CAAC;AAEF,MAAM,MAAM,yBAAyB,GAAG;IACvC,OAAO,EAAE,aAAa,GAAG,SAAS,GAAG,YAAY,CAAC;IAClD,UAAU,EAAE,KAAK,GAAG,QAAQ,GAAG,MAAM,CAAC;IACtC,IAAI,EAAE,SAAS,CAAC;IAChB,gBAAgB,EAAE,MAAM,CAAC;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF,MAAM,MAAM,WAAW,GAAG;IACzB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,EAAE,cAAc,CAAC;IAC/B,cAAc,EAAE,cAAc,CAAC;IAC/B,iBAAiB,EAAE,MAAM,CAAC;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,eAAe,EAAE,MAAM,CAAC;IACxB,cAAc,EAAE,MAAM,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,2BAA2B,EAAE,MAAM,EAAE,CAAC;IACtC,0BAA0B,EAAE,MAAM,EAAE,CAAC;IACrC,MAAM,CAAC,EAAE;QACR,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,KAAK,CAAC,EAAE,MAAM,CAAC;KACf,CAAC;IACF,MAAM,CAAC,EAAE;QACR,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,eAAe,EAAE,MAAM,CAAC;QACxB,oBAAoB,EAAE,MAAM,CAAC;QAC7B,mBAAmB,CAAC,EAAE,MAAM,CAAC;QAC7B,iBAAiB,CAAC,EAAE,MAAM,CAAC;QAC3B,QAAQ,EAAE,MAAM,CAAC;QACjB,UAAU,CAAC,EAAE,MAAM,CAAC;KACpB,CAAC;IACF,QAAQ,CAAC,EAAE;QACV,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,aAAa,CAAC,EAAE,MAAM,CAAC;KACvB,CAAC;IACF,UAAU,CAAC,EAAE;QACZ,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,YAAY,CAAC,EAAE,MAAM,CAAC;QACtB,kBAAkB,EAAE,MAAM,CAAC;KAC3B,CAAC;IACF,eAAe,EAAE,eAAe,CAAC;I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package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@nairon-ai/aegis",
-	"version": "0.6.0",
+	"version": "0.6.2",
 	"description": "Self-hosted AFK bug-fixing agent for GitHub Issues and Linear",
 	"type": "module",
 	"repository": {

package/src/agent/client.ts

@@ -17,6 +17,7 @@ export type BugFixAgentCaller = <T>(
 	context: AgentRunContext,
 	env?: Bindings,
 	ctx?: ExecutionContext,
+	signal?: AbortSignal,
 ) => Promise<T>;
 
 export async function startPlanRun(params: {
@@ -27,6 +28,7 @@ export async function startPlanRun(params: {
 	callAgent?: BugFixAgentCaller;
 	env?: Bindings;
 	ctx?: ExecutionContext;
+	signal?: AbortSignal;
 }): Promise<void> {
 	const result = await callBugFixAgent<AgentPlanResult>(
 		params.config,
@@ -39,6 +41,7 @@ export async function startPlanRun(params: {
 		params.callAgent,
 		params.env,
 		params.ctx,
+		params.signal,
 	);
 
 	const source = sourceFor(params.config, params.item.source);
@@ -66,6 +69,7 @@ export async function startImplementationRun(params: {
 	callAgent?: BugFixAgentCaller;
 	env?: Bindings;
 	ctx?: ExecutionContext;
+	signal?: AbortSignal;
 }): Promise<void> {
 	const context = await buildAgentContext({
 		config: params.config,
@@ -80,6 +84,7 @@ export async function startImplementationRun(params: {
 		params.callAgent,
 		params.env,
 		params.ctx,
+		params.signal,
 	);
 	const source = sourceFor(params.config, params.item.source);
 
@@ -145,8 +150,9 @@ async function callBugFixAgent<T>(
 	callAgent?: BugFixAgentCaller,
 	env?: Bindings,
 	ctx?: ExecutionContext,
+	signal?: AbortSignal,
 ): Promise<T> {
-	if (callAgent) return await callAgent<T>(context, env, ctx);
+	if (callAgent) return await callAgent<T>(context, env, ctx, signal);
 
 	if (!config.workerUrl) {
 		throw new Error("AEGIS_WORKER_URL is required so the Worker can invoke its Flue agent");
@@ -155,6 +161,7 @@ async function callBugFixAgent<T>(
 		method: "POST",
 		headers: { "Content-Type": "application/json" },
 		body: JSON.stringify(context),
+		signal,
 	});
 	if (!response.ok) {
 		const text = await response.text();

package/src/cli/commands/peek.ts

@@ -35,6 +35,7 @@ export async function runPeek(run: string): Promise<void> {
 	const result = (await response.json()) as SandboxPeekResult;
 	consola.log(`\n  Run: ${result.runId}`);
 	consola.log(`  Checked: ${result.checkedAt}`);
+	printSection("Aegis Status", result.status);
 	printSection("Workspace", result.workspace);
 	printSection("Git", result.git);
 	printSection("Processes", result.processes);

package/src/cli/commands/recover.ts

@@ -0,0 +1,52 @@
+import { defineCommand } from "citty";
+import { consola } from "consola";
+import { recoverStaleRuns } from "../../core/runs.js";
+import { configFromCli } from "../../shared/config.js";
+import { loadConfig } from "../state.js";
+
+const DEFAULT_STALE_RUN_MINUTES = 20;
+
+export const recoverCommand = defineCommand({
+	meta: { name: "recover", description: "Mark stale Aegis runs as blocked" },
+	args: {
+		"older-than-minutes": {
+			type: "string",
+			description: "Only recover runs with no tracker update for this many minutes",
+			default: String(DEFAULT_STALE_RUN_MINUTES),
+		},
+	},
+	async run({ args }) {
+		await runRecover({
+			olderThanMinutes: parsePositiveInteger(
+				String(args["older-than-minutes"] ?? DEFAULT_STALE_RUN_MINUTES),
+				DEFAULT_STALE_RUN_MINUTES,
+			),
+		});
+	},
+});
+
+export async function runRecover(options: { olderThanMinutes: number }): Promise<void> {
+	const config = configFromCli(loadConfig());
+	if (!config.monitoredRepo) {
+		consola.error("MONITORED_REPO is missing. Run `aegis setup` first.");
+		return;
+	}
+
+	consola.start(`Checking for Aegis runs stale for ${options.olderThanMinutes}+ minutes...`);
+	const results = await recoverStaleRuns(config, options);
+	if (!results.length) {
+		consola.info("No active Aegis runs found.");
+		return;
+	}
+
+	for (const result of results) {
+		const line = `${result.runId} ${result.identifier} ${result.status} - ${result.reason}`;
+		if (result.status === "blocked") consola.warn(line);
+		else consola.info(line);
+	}
+}
+
+function parsePositiveInteger(value: string, fallback: number): number {
+	const parsed = Number.parseInt(value, 10);
+	return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;
+}

package/src/cli/index.ts

@@ -9,6 +9,7 @@ import { initCommand } from "./commands/init.js";
 import { logsCommand } from "./commands/logs.js";
 import { peekCommand } from "./commands/peek.js";
 import { pickupCommand } from "./commands/pickup.js";
+import { recoverCommand } from "./commands/recover.js";
 import { runsCommand } from "./commands/runs.js";
 import { setupCommand } from "./commands/setup.js";
 import { statusCommand } from "./commands/status.js";
@@ -28,6 +29,7 @@ const main = defineCommand({
 		runs: runsCommand,
 		peek: peekCommand,
 		logs: logsCommand,
+		recover: recoverCommand,
 		status: statusCommand,
 		deploy: deployCommand,
 		disconnect: disconnectCommand,

package/src/cli/state.ts

@@ -221,6 +221,10 @@ export async function runInteractiveMenu(): Promise<void> {
 		const { runRuns } = await import("./commands/runs.js");
 		await runRuns();
 	}
+	if (choice === "recover") {
+		const { runRecover } = await import("./commands/recover.js");
+		await runRecover({ olderThanMinutes: 20 });
+	}
 	if (choice === "setup") {
 		const { runSetupWizard } = await import("./commands/setup.js");
 		await runSetupWizard();
@@ -247,6 +251,7 @@ async function promptMenuChoice(): Promise<string | undefined> {
 			options: [
 				{ label: "Find ready bugs (dry run)", value: "pickup" },
 				{ label: "View active runs", value: "runs" },
+				{ label: "Recover stale runs", value: "recover" },
 				{ label: "Run setup", value: "setup" },
 				{ label: "View status", value: "status" },
 				{ label: "Deploy worker", value: "deploy" },

package/src/core/runs.ts

@@ -1,7 +1,9 @@
 import { GitHubClient } from "../integrations/github.js";
 import { LinearClient } from "../integrations/linear.js";
+import { sendTelegramMessage } from "../integrations/telegram.js";
 import { runFromItem } from "../shared/run-state.js";
 import type { AegisConfig, RunSnapshot, WorkItem, WorkItemStatus } from "../shared/types.js";
+import { sourceFor } from "../sources/index.js";
 
 const ACTIVE_STATUSES: WorkItemStatus[] = ["claimed", "planning", "implementing"];
 const TRACKED_STATUSES: WorkItemStatus[] = [
@@ -24,6 +26,68 @@ export async function listRunSnapshots(
 	return dedupeSnapshots(snapshots.flat());
 }
 
+export type StaleRunRecovery = {
+	runId: string;
+	identifier: string;
+	source: WorkItem["source"];
+	status: "blocked" | "still-active";
+	ageMinutes?: number;
+	reason: string;
+};
+
+export async function recoverStaleRuns(
+	config: AegisConfig,
+	options: { olderThanMinutes: number },
+): Promise<StaleRunRecovery[]> {
+	const activeRuns = await listRunSnapshots(config);
+	const now = Date.now();
+	const results: StaleRunRecovery[] = [];
+
+	for (const snapshot of activeRuns) {
+		const updatedAt = snapshot.item.updatedAt ? Date.parse(snapshot.item.updatedAt) : Number.NaN;
+		if (!Number.isFinite(updatedAt)) {
+			results.push({
+				runId: snapshot.run.id,
+				identifier: snapshot.item.identifier,
+				source: snapshot.item.source,
+				status: "still-active",
+				reason: "No tracker updatedAt timestamp available.",
+			});
+			continue;
+		}
+
+		const ageMinutes = Math.floor((now - updatedAt) / 60_000);
+		if (ageMinutes < options.olderThanMinutes) {
+			results.push({
+				runId: snapshot.run.id,
+				identifier: snapshot.item.identifier,
+				source: snapshot.item.source,
+				status: "still-active",
+				ageMinutes,
+				reason: `Updated ${ageMinutes} minute(s) ago.`,
+			});
+			continue;
+		}
+
+		const message = staleRunMessage(snapshot.run.id, options.olderThanMinutes);
+		await sourceFor(config, snapshot.item.source).markBlocked(snapshot.item, message);
+		await sendTelegramMessage(
+			config,
+			`Aegis stopped ${snapshot.item.identifier}: it did not finish an RCA within ${options.olderThanMinutes} minutes.\n\nRun: ${snapshot.run.id}\nTicket: ${snapshot.item.url}`,
+		);
+		results.push({
+			runId: snapshot.run.id,
+			identifier: snapshot.item.identifier,
+			source: snapshot.item.source,
+			status: "blocked",
+			ageMinutes,
+			reason: `No RCA was posted within ${options.olderThanMinutes} minute(s).`,
+		});
+	}
+
+	return results;
+}
+
 async function listRunSnapshotsForStatus(
 	config: AegisConfig,
 	status: WorkItemStatus,
@@ -88,3 +152,20 @@ function linearStatusNameForStatus(
 	if (status === "blocked" || status === "failed") return config.linear?.blockedStatusName;
 	return undefined;
 }
+
+function staleRunMessage(runId: string, olderThanMinutes: number): string {
+	return `Aegis stopped this run because it did not finish an RCA within ${olderThanMinutes} minutes.
+
+Run: \`${runId}\`
+
+What this means:
+- Aegis claimed the ticket and started the sandbox.
+- It did not post a root-cause analysis or approval summary in time.
+- The safest action is to retry after checking logs.
+
+Useful commands:
+- \`aegis peek ${runId}\`
+- \`aegis logs ${runId}\`
+
+To retry, move this ticket back to the ready status/label.`;
+}

package/src/server/app.ts

@@ -2,7 +2,7 @@ import { Hono } from "hono";
 import { startImplementationRun, startPlanRun } from "../agent/client.js";
 import type { BugFixAgentCaller } from "../agent/client.js";
 import { pickupReadyBugs, scanReadyBugs } from "../core/pickup.js";
-import { listRunSnapshots } from "../core/runs.js";
+import { listRunSnapshots, recoverStaleRuns } from "../core/runs.js";
 import { GitHubClient } from "../integrations/github.js";
 import { LinearClient } from "../integrations/linear.js";
 import {
@@ -29,6 +29,9 @@ type AegisAppOptions = {
 	peekSandbox?: (runId: string, env: Bindings) => Promise<SandboxPeekResult>;
 };
 
+const DEFAULT_PLAN_TIMEOUT_MINUTES = 12;
+const DEFAULT_STALE_RUN_MINUTES = 20;
+
 export function createAegisApp(options: AegisAppOptions = {}) {
 	const app = new Hono<HonoBindings>();
 
@@ -56,6 +59,9 @@ export function createAegisApp(options: AegisAppOptions = {}) {
 
 	app.post("/api/pickup", async (c) => {
 		const config = { ...configFromBindings(c.env), workerUrl: new URL(c.req.url).origin };
+		const recovered = await recoverStaleRuns(config, {
+			olderThanMinutes: staleRunMinutes(c.env),
+		});
 		const decisions = await pickupReadyBugs({
 			config,
 			startRun: async (item, run, decision) => {
@@ -70,6 +76,7 @@ export function createAegisApp(options: AegisAppOptions = {}) {
 			},
 		});
 		return c.json({
+			recovered: recovered.filter((result) => result.status === "blocked"),
 			count: decisions.length,
 			decisions: decisions.map((decision) => ({
 				source: decision.item.source,
@@ -92,6 +99,14 @@ export function createAegisApp(options: AegisAppOptions = {}) {
 		return c.json({ runs: await listRunSnapshots(config, { all }) });
 	});
 
+	app.post("/api/runs/recover", async (c) => {
+		const config = { ...configFromBindings(c.env), workerUrl: new URL(c.req.url).origin };
+		const results = await recoverStaleRuns(config, {
+			olderThanMinutes: staleRunMinutes(c.env),
+		});
+		return c.json({ results });
+	});
+
 	app.get("/api/runs/:id/peek", async (c) => {
 		if (!options.peekSandbox) return c.json({ error: "sandbox peek is not available" }, 501);
 		return c.json(await options.peekSandbox(c.req.param("id"), c.env));
@@ -220,6 +235,11 @@ export async function scheduledPickup(
 	callAgent?: BugFixAgentCaller,
 ): Promise<void> {
 	const config = configFromBindings(env);
+	const recovered = await recoverStaleRuns(config, { olderThanMinutes: staleRunMinutes(env) });
+	const blocked = recovered.filter((result) => result.status === "blocked");
+	if (blocked.length) {
+		console.log(`[aegis] recovered ${blocked.length} stale run(s)`);
+	}
 	const decisions = await pickupReadyBugs({
 		config,
 		startRun: async (item, run, decision) => {
@@ -260,11 +280,35 @@ async function startPlanSafely(
 ): Promise<void> {
 	const baseConfig = configFromBindings(env);
 	const config = { ...baseConfig, workerUrl: baseConfig.workerUrl ?? workerUrl };
+	const abortController = new AbortController();
+	const timeoutMinutes = planTimeoutMinutes(env);
 	try {
-		await startPlanRun({ config, item, run, decision, callAgent, env, ctx });
+		await withTimeout(
+			startPlanRun({
+				config,
+				item,
+				run,
+				decision,
+				callAgent,
+				env,
+				ctx,
+				signal: abortController.signal,
+			}),
+			timeoutMinutes * 60_000,
+			() => abortController.abort(),
+		);
 	} catch (error) {
-		const message = error instanceof Error ? error.message : String(error);
+		const message =
+			error instanceof Error && error.name === "AegisTimeoutError"
+				? `Timed out after ${timeoutMinutes} minutes while waiting for the RCA.`
+				: error instanceof Error
+					? error.message
+					: String(error);
 		await sourceFor(config, item.source).markBlocked(item, `Aegis failed to run: ${message}`);
+		await sendTelegramMessage(
+			config,
+			`Aegis stopped ${item.identifier}: ${message}\n\nRun: ${run.id}\nTicket: ${item.url}`,
+		);
 	}
 }
 
@@ -344,6 +388,43 @@ async function stopRun(env: Bindings, runId: string, item?: WorkItem): Promise<v
 	await sourceFor(config, resolved.source).markBlocked(resolved, `Aegis run ${runId} was stopped.`);
 }
 
+async function withTimeout<T>(
+	promise: Promise<T>,
+	timeoutMs: number,
+	onTimeout: () => void,
+): Promise<T> {
+	let timeout: ReturnType<typeof setTimeout> | undefined;
+	try {
+		return await Promise.race([
+			promise,
+			new Promise<never>((_resolve, reject) => {
+				timeout = setTimeout(() => {
+					onTimeout();
+					const error = new Error("Aegis run timed out");
+					error.name = "AegisTimeoutError";
+					reject(error);
+				}, timeoutMs);
+			}),
+		]);
+	} finally {
+		if (timeout) clearTimeout(timeout);
+	}
+}
+
+function planTimeoutMinutes(env: Bindings): number {
+	return parsePositiveInteger(env.AEGIS_PLAN_TIMEOUT_MINUTES, DEFAULT_PLAN_TIMEOUT_MINUTES);
+}
+
+function staleRunMinutes(env: Bindings): number {
+	return parsePositiveInteger(env.AEGIS_STALE_RUN_MINUTES, DEFAULT_STALE_RUN_MINUTES);
+}
+
+function parsePositiveInteger(value: string | undefined, fallback: number): number {
+	if (!value) return fallback;
+	const parsed = Number.parseInt(value, 10);
+	return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;
+}
+
 async function resolveItemFromRunId(
 	config: ReturnType<typeof configFromBindings>,
 	runId: string,