@nairon-ai/aegis 0.4.5 → 0.4.7

package/README.md

@@ -68,12 +68,14 @@ If you see `No ready bugs found`, check `MONITORED_REPO`, exact label names, iss
 
 During `setup`, choose one:
 
-- `One-click GitHub App`: recommended. Aegis opens a browser page, creates the app, asks you to install it on the repo, then saves the credentials. If you rerun setup later, Aegis reuses the existing app instead of creating another one.
+- `One-click GitHub App`: recommended. Aegis opens a browser page, creates the app, asks you to install it on the repo, then saves the credentials. If you rerun setup later, Aegis reuses the saved app instead of creating another one. If it finds an installed Aegis app without local credentials, it helps you recover it by generating a new GitHub App private key.
 - `GitHub token`: quick local test if you already know how to create fine-grained GitHub tokens.
 - `Paste existing GitHub App credentials`: only if you already made an app manually.
 
 Aegis auto-detects `git remote origin` and origin's default branch when you run setup inside your product repo, so it normally will not ask which repo or base branch to use. If no GitHub origin exists, it asks for `owner/repo` or a full GitHub URL like `https://github.com/KeyLead-Team/keylead`.
 
+GitHub App credentials are saved in `.aegis/.env` and backed up for your Mac user under `~/.aegis/github-apps/`, so future setup runs reuse the same app automatically. GitHub only requires a new private-key download if those local credentials were never saved or were deleted.
+
 If you connect Linear, Aegis fetches your Linear teams after you paste the API key and lets you choose by name, for example `Engineering (ENG)`. You do not need to hunt for Linear UUIDs manually.
 
 ### Deployed AFK Mode
@@ -181,7 +183,8 @@ To fully stop using Aegis:
 2. Uninstall the Aegis GitHub App from the repo, or revoke the GitHub token.
 3. Delete Aegis webhooks from GitHub, Linear, and Telegram if configured.
 4. Remove local config: `rm -rf .aegis`.
-5. Optionally remove Aegis-only labels: `aegis:in-progress`, `aegis:needs-info`, `aegis:blocked`, `aegis:pr-opened`.
+5. Remove cached GitHub App credentials if you used the app flow: `rm -f ~/.aegis/github-apps/YOUR-ORG-YOUR-REPO.env`.
+6. Optionally remove Aegis-only labels: `aegis:in-progress`, `aegis:needs-info`, `aegis:blocked`, `aegis:pr-opened`.
 
 ## How Pickup Works
 

package/dist-node/cli/commands/disconnect.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"disconnect.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/disconnect.ts"],"names":[],"mappings":"AAKA,eAAO,MAAM,iBAAiB,qDAQ5B,CAAC;AAEH,wBAAgB,kBAAkB,IAAI,IAAI,CA2DzC"}

package/dist-node/cli/commands/disconnect.js

@@ -1,5 +1,6 @@
 import { defineCommand } from "citty";
 import { consola } from "consola";
+import { getGitHubAppCacheFile } from "../github-app-cache.js";
 import { loadConfig } from "../state.js";
 export const disconnectCommand = defineCommand({
     meta: {
@@ -47,6 +48,10 @@ export function runDisconnectGuide() {
     consola.log("");
     consola.log("4. Remove local config from this repo");
     consola.log("   rm -rf .aegis");
+    if (config.monitoredRepo) {
+        consola.log("   Remove this user's cached GitHub App credentials too:");
+        consola.log(`   rm -f ${getGitHubAppCacheFile(config.monitoredRepo)}`);
+    }
     consola.log("   If you installed Aegis as a dev dependency:");
     consola.log("   npm remove @nairon-ai/aegis");
     consola.log("");

package/dist-node/cli/commands/disconnect.js.map

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package/dist-node/cli/commands/setup.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/setup.ts"],"names":[],"mappings":"AAsCA,eAAO,MAAM,YAAY,qDAKvB,CAAC;AAEH,wBAAsB,cAAc,IAAI,OAAO,CAAC,IAAI,CAAC,CAoCpD"}

package/dist-node/cli/commands/setup.js

@@ -1,8 +1,9 @@
-import { execFileSync } from "node:child_process";
-import { existsSync, readFileSync } from "node:fs";
+import { execFileSync, spawn } from "node:child_process";
+import { existsSync, readFileSync, readdirSync, statSync } from "node:fs";
 import { resolve } from "node:path";
 import { defineCommand } from "citty";
 import { consola } from "consola";
+import { restoreGitHubAppCache, saveGitHubAppCache } from "../github-app-cache.js";
 import { runGitHubAppFlow } from "../github-app-flow.js";
 import { resolveEnvFileForWrite } from "../paths.js";
 import { detectSetupState, printState, saveConfig } from "../state.js";
@@ -106,11 +107,22 @@ async function setupGitHub(config) {
     if (hasGitHubAppConfig(config)) {
         consola.info(`Using existing GitHub App installation ${config.githubInstallationId}. Rerun disconnect if you want to remove it.`);
         config.githubToken = undefined;
+        saveGitHubAppCache(config);
     }
     else if (config.githubToken) {
         consola.info("Using existing GitHub token from .aegis config.");
     }
+    else if (restoreGitHubAppCache(config)) {
+        consola.info("Restored GitHub App credentials from this user's Aegis cache.");
+        saveConfig(config);
+    }
     else {
+        const installedApps = detectInstalledAegisApps(config.monitoredRepo);
+        if (installedApps.length > 0) {
+            await setupDetectedGitHubApp(config, installedApps);
+        }
+    }
+    if (!hasGitHubAppConfig(config) && !config.githubToken) {
         const method = await promptSelect("Auth method:", [
             { label: "One-click GitHub App (recommended)", value: "app-flow" },
             { label: "GitHub token (quick local test)", value: "token" },
@@ -181,6 +193,7 @@ async function setupGitHubAppFlow(config) {
         config.githubWebhookSecret = app.webhookSecret;
         config.githubToken = undefined;
         saveConfig(config);
+        saveGitHubAppCache(config);
         consola.success(`Saved GitHub App credentials to ${resolveEnvFileForWrite()}.`);
     }
     catch (error) {
@@ -196,26 +209,166 @@ async function setupGitHubAppManual(config) {
         "If that sounds unfamiliar, cancel and rerun setup with the one-click GitHub App option.",
     ]);
     config.githubAppId = await promptText("GitHub App ID:", config.githubAppId);
-    const keyPath = await promptText("Path to GitHub App private key .pem:", undefined);
-    if (keyPath) {
-        const resolved = resolve(keyPath.replace(/^~/, process.env.HOME ?? "~"));
-        if (existsSync(resolved)) {
-            config.githubAppPrivateKey = Buffer.from(readFileSync(resolved, "utf-8")).toString("base64");
-            consola.success("Loaded private key");
-        }
-        else {
-            consola.warn(`File not found: ${resolved}`);
+    await promptGitHubAppPrivateKey(config);
+    config.githubInstallationId = await promptText("GitHub App installation ID:", config.githubInstallationId);
+    config.githubToken = undefined;
+}
+async function setupDetectedGitHubApp(config, installedApps) {
+    const installationId = installedApps.length === 1
+        ? installedApps[0].installationId
+        : await promptSelect("Existing Aegis GitHub App:", installedApps.map((app) => ({
+            label: `${app.slug} (installation ${app.installationId})`,
+            value: app.installationId,
+        })));
+    const selected = installedApps.find((app) => app.installationId === installationId);
+    if (!selected)
+        return;
+    printStep("Existing Aegis GitHub App found", [
+        `Found ${selected.slug} installed on this GitHub org.`,
+        "GitHub does not let Aegis read an old private key back.",
+        "To reuse this app, Aegis will help you generate one new private key.",
+        "If you would rather create a fresh app, answer no.",
+    ]);
+    const useExisting = await promptConfirm("Reuse this installed GitHub App?", true);
+    if (!useExisting)
+        return;
+    config.githubAppId = selected.appId;
+    config.githubInstallationId = selected.installationId;
+    config.githubToken = undefined;
+    await promptGitHubAppPrivateKey(config, selected.settingsUrl);
+    saveConfig(config);
+    saveGitHubAppCache(config);
+    consola.success(`Saved existing GitHub App credentials to ${resolveEnvFileForWrite()}.`);
+}
+async function promptGitHubAppPrivateKey(config, settingsUrl) {
+    printStep("GitHub App private key", [
+        settingsUrl ? `Opening: ${settingsUrl}` : "Open the GitHub App settings page.",
+        "Click Generate a private key.",
+        "Aegis will watch Downloads/Desktop and load the downloaded .pem automatically.",
+        "GitHub only gives private keys at creation/download time; Aegis cannot fetch old keys.",
+    ]);
+    const startedAt = Date.now();
+    if (settingsUrl)
+        openBrowser(settingsUrl);
+    const detected = settingsUrl ? await waitForDownloadedPem(startedAt) : undefined;
+    if (detected) {
+        loadPrivateKey(config, detected);
+        consola.success(`Loaded private key from ${detected}`);
+    }
+    if (!config.githubAppPrivateKey) {
+        const keyPath = await promptText("Path to GitHub App private key .pem:", undefined);
+        if (keyPath) {
+            const resolved = resolve(keyPath.replace(/^~/, process.env.HOME ?? "~"));
+            if (existsSync(resolved)) {
+                loadPrivateKey(config, resolved);
+                consola.success("Loaded private key");
+            }
+            else {
+                consola.warn(`File not found: ${resolved}`);
+            }
         }
     }
     if (!config.githubAppPrivateKey) {
         config.githubAppPrivateKey = Buffer.from(await promptText("Paste GitHub App private key PEM:", config.githubAppPrivateKey)).toString("base64");
     }
-    config.githubInstallationId = await promptText("GitHub App installation ID:", config.githubInstallationId);
-    config.githubToken = undefined;
+}
+async function waitForDownloadedPem(startedAt) {
+    consola.info("Waiting up to 2 minutes for a new .pem file in Downloads or Desktop...");
+    for (let attempt = 0; attempt < 120; attempt += 1) {
+        const candidates = findRecentPemFiles(startedAt - 5_000);
+        if (candidates.length === 1)
+            return candidates[0].path;
+        if (candidates.length > 1) {
+            return await promptSelect("Downloaded private key:", candidates.map((file) => ({
+                label: file.path,
+                value: file.path,
+            })));
+        }
+        await sleep(1000);
+    }
+    consola.warn("No new .pem file detected.");
+    return undefined;
+}
+function findRecentPemFiles(sinceMs) {
+    const home = process.env.HOME;
+    if (!home)
+        return [];
+    const dirs = [resolve(home, "Downloads"), resolve(home, "Desktop")];
+    const files = [];
+    for (const dir of dirs) {
+        try {
+            for (const entry of readdirSync(dir)) {
+                if (!entry.toLowerCase().endsWith(".pem"))
+                    continue;
+                const path = resolve(dir, entry);
+                const stat = statSync(path);
+                if (stat.isFile() && stat.mtimeMs >= sinceMs) {
+                    files.push({ path, mtimeMs: stat.mtimeMs });
+                }
+            }
+        }
+        catch {
+            // Ignore missing/unreadable directories.
+        }
+    }
+    return files.sort((a, b) => b.mtimeMs - a.mtimeMs).slice(0, 5);
+}
+function loadPrivateKey(config, path) {
+    config.githubAppPrivateKey = Buffer.from(readFileSync(path, "utf-8")).toString("base64");
+}
+function sleep(ms) {
+    return new Promise((resolveSleep) => setTimeout(resolveSleep, ms));
 }
 function hasGitHubAppConfig(config) {
     return Boolean(config.githubAppId && config.githubAppPrivateKey && config.githubInstallationId);
 }
+function detectInstalledAegisApps(monitoredRepo) {
+    if (!monitoredRepo)
+        return [];
+    const [owner, repo] = monitoredRepo.split("/");
+    if (!owner || !repo)
+        return [];
+    const payload = runGhApi([
+        "api",
+        `orgs/${owner}/installations`,
+    ]);
+    const installations = payload?.installations ?? [];
+    const repoSlug = slugify(repo);
+    const ownerSlug = slugify(owner);
+    const aegisApps = installations
+        .filter((installation) => installation.app_slug?.startsWith("aegis"))
+        .map((installation) => ({
+        appId: String(installation.app_id),
+        installationId: String(installation.id),
+        slug: installation.app_slug,
+        settingsUrl: `https://github.com/organizations/${owner}/settings/apps/${installation.app_slug}`,
+    }));
+    const repoMatches = aegisApps.filter((app) => app.slug.includes(repoSlug) || app.slug.includes(`${ownerSlug}-${repoSlug}`));
+    return repoMatches.length > 0 ? repoMatches : aegisApps;
+}
+function runGhApi(args) {
+    try {
+        return JSON.parse(execFileSync("gh", args, {
+            encoding: "utf-8",
+            stdio: ["ignore", "pipe", "ignore"],
+        }));
+    }
+    catch {
+        return undefined;
+    }
+}
+function openBrowser(url) {
+    const command = process.platform === "darwin" ? "open" : process.platform === "win32" ? "cmd" : "xdg-open";
+    const args = process.platform === "win32" ? ["/c", "start", "", url] : [url];
+    const child = spawn(command, args, { detached: true, stdio: "ignore" });
+    child.unref();
+}
+function slugify(value) {
+    return value
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, "-")
+        .replace(/^-|-$/g, "");
+}
 async function setupLinear(config) {
     printStep("Step 4: optional Linear connection", [
         "Use this only if your team tracks bugs in Linear.",

package/dist-node/cli/commands/setup.js.map

@@ -1 +1 @@
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package/dist-node/cli/github-app-cache.d.ts

@@ -0,0 +1,5 @@
+import type { AegisCliConfig } from "../shared/types.js";
+export declare function restoreGitHubAppCache(config: AegisCliConfig): boolean;
+export declare function saveGitHubAppCache(config: AegisCliConfig): void;
+export declare function getGitHubAppCacheFile(monitoredRepo: string): string;
+//# sourceMappingURL=github-app-cache.d.ts.map

package/dist-node/cli/github-app-cache.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"github-app-cache.d.ts","sourceRoot":"","sources":["../../src/cli/github-app-cache.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AASzD,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,cAAc,GAAG,OAAO,CAUrE;AAED,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,cAAc,GAAG,IAAI,CAa/D;AA6BD,wBAAgB,qBAAqB,CAAC,aAAa,EAAE,MAAM,GAAG,MAAM,CAGnE"}

package/dist-node/cli/github-app-cache.js

@@ -0,0 +1,70 @@
+import { chmodSync, existsSync, mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { dirname, resolve } from "node:path";
+export function restoreGitHubAppCache(config) {
+    if (!config.monitoredRepo || hasGitHubAppConfig(config))
+        return false;
+    const cached = readGitHubAppCache(config.monitoredRepo);
+    if (!cached)
+        return false;
+    config.githubAppId = cached.appId;
+    config.githubAppPrivateKey = cached.privateKey;
+    config.githubInstallationId = cached.installationId;
+    config.githubWebhookSecret ??= cached.webhookSecret;
+    config.githubToken = undefined;
+    return true;
+}
+export function saveGitHubAppCache(config) {
+    if (!config.monitoredRepo || !hasGitHubAppConfig(config))
+        return;
+    const file = getGitHubAppCacheFile(config.monitoredRepo);
+    const lines = [
+        "# Aegis GitHub App cache. Do not share this file.",
+        `GITHUB_APP_ID=${config.githubAppId}`,
+        `GITHUB_APP_PRIVATE_KEY=${config.githubAppPrivateKey}`,
+        `GITHUB_INSTALLATION_ID=${config.githubInstallationId}`,
+        config.githubWebhookSecret ? `GITHUB_WEBHOOK_SECRET=${config.githubWebhookSecret}` : undefined,
+    ].filter(Boolean);
+    mkdirSync(dirname(file), { recursive: true });
+    writeFileSync(file, `${lines.join("\n")}\n`, { mode: 0o600 });
+    chmodSync(file, 0o600);
+}
+function readGitHubAppCache(monitoredRepo) {
+    const file = getGitHubAppCacheFile(monitoredRepo);
+    if (!existsSync(file))
+        return undefined;
+    const values = new Map();
+    for (const line of readFileSync(file, "utf-8").split("\n")) {
+        const trimmed = line.trim();
+        if (!trimmed || trimmed.startsWith("#"))
+            continue;
+        const idx = trimmed.indexOf("=");
+        if (idx === -1)
+            continue;
+        values.set(trimmed.slice(0, idx), trimmed.slice(idx + 1));
+    }
+    const appId = values.get("GITHUB_APP_ID");
+    const privateKey = values.get("GITHUB_APP_PRIVATE_KEY");
+    const installationId = values.get("GITHUB_INSTALLATION_ID");
+    if (!appId || !privateKey || !installationId)
+        return undefined;
+    return {
+        appId,
+        privateKey,
+        installationId,
+        webhookSecret: values.get("GITHUB_WEBHOOK_SECRET"),
+    };
+}
+function hasGitHubAppConfig(config) {
+    return Boolean(config.githubAppId && config.githubAppPrivateKey && config.githubInstallationId);
+}
+export function getGitHubAppCacheFile(monitoredRepo) {
+    const home = process.env.HOME ?? process.cwd();
+    return resolve(home, ".aegis", "github-apps", `${slugify(monitoredRepo)}.env`);
+}
+function slugify(value) {
+    return value
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, "-")
+        .replace(/^-|-$/g, "");
+}
+//# sourceMappingURL=github-app-cache.js.map

package/dist-node/cli/github-app-cache.js.map

@@ -0,0 +1 @@
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package/docs/SETUP.md

@@ -153,7 +153,8 @@ Important answers:
 
 - `Repo to monitor`: Aegis detects `git remote origin` when you run setup inside your product repo, so this is normally automatic. If no GitHub origin exists, paste `acme/web-app` / `https://github.com/acme/web-app`.
 - `Base branch`: Aegis detects origin's default branch automatically. If detection fails, it uses `main`; edit `BASE_BRANCH` in `.aegis/.env` only if your repo uses something else.
-- GitHub auth: use `One-click GitHub App` unless you already know how to create a fine-grained GitHub token. If setup already saved a GitHub App, Aegis reuses it on reruns.
+- GitHub auth: use `One-click GitHub App` unless you already know how to create a fine-grained GitHub token. If setup already saved a GitHub App, Aegis reuses it on reruns. If GitHub has an installed Aegis app but local credentials are missing, setup detects it and asks you to generate a new app private key so it can recover the existing app.
+- GitHub App reuse: Aegis saves app credentials in `.aegis/.env` and backs them up for your Mac user under `~/.aegis/github-apps/`. Future setup runs restore them automatically.
 - Linear team: after you paste the Linear API key, Aegis fetches your teams and lets you choose by name. You do not need to copy the Linear team UUID manually.
 - `GitHub webhook secret`: generate one and keep it in `.aegis/.env`
 - `Automation mode`: start with `plan-first`

package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@nairon-ai/aegis",
-	"version": "0.4.5",
+	"version": "0.4.7",
 	"description": "Self-hosted AFK bug-fixing agent for GitHub Issues and Linear",
 	"type": "module",
 	"repository": {

package/src/cli/commands/disconnect.ts

@@ -1,5 +1,6 @@
 import { defineCommand } from "citty";
 import { consola } from "consola";
+import { getGitHubAppCacheFile } from "../github-app-cache.js";
 import { loadConfig } from "../state.js";
 
 export const disconnectCommand = defineCommand({
@@ -58,6 +59,10 @@ export function runDisconnectGuide(): void {
 
 	consola.log("4. Remove local config from this repo");
 	consola.log("   rm -rf .aegis");
+	if (config.monitoredRepo) {
+		consola.log("   Remove this user's cached GitHub App credentials too:");
+		consola.log(`   rm -f ${getGitHubAppCacheFile(config.monitoredRepo)}`);
+	}
 	consola.log("   If you installed Aegis as a dev dependency:");
 	consola.log("   npm remove @nairon-ai/aegis");
 	consola.log("");

package/src/cli/commands/setup.ts

@@ -1,9 +1,10 @@
-import { execFileSync } from "node:child_process";
-import { existsSync, readFileSync } from "node:fs";
+import { execFileSync, spawn } from "node:child_process";
+import { existsSync, readFileSync, readdirSync, statSync } from "node:fs";
 import { resolve } from "node:path";
 import { defineCommand } from "citty";
 import { consola } from "consola";
 import type { AegisCliConfig } from "../../shared/types.js";
+import { restoreGitHubAppCache, saveGitHubAppCache } from "../github-app-cache.js";
 import { runGitHubAppFlow } from "../github-app-flow.js";
 import { resolveEnvFileForWrite } from "../paths.js";
 import { detectSetupState, printState, saveConfig } from "../state.js";
@@ -16,6 +17,18 @@ type LinearTeam = {
 	key: string;
 };
 
+type InstalledGitHubApp = {
+	appId: string;
+	installationId: string;
+	slug: string;
+	settingsUrl: string;
+};
+
+type PemFile = {
+	path: string;
+	mtimeMs: number;
+};
+
 class SetupCancelledError extends Error {
 	constructor() {
 		super("Setup cancelled.");
@@ -123,9 +136,20 @@ async function setupGitHub(config: AegisCliConfig): Promise<void> {
 			`Using existing GitHub App installation ${config.githubInstallationId}. Rerun disconnect if you want to remove it.`,
 		);
 		config.githubToken = undefined;
+		saveGitHubAppCache(config);
 	} else if (config.githubToken) {
 		consola.info("Using existing GitHub token from .aegis config.");
+	} else if (restoreGitHubAppCache(config)) {
+		consola.info("Restored GitHub App credentials from this user's Aegis cache.");
+		saveConfig(config);
 	} else {
+		const installedApps = detectInstalledAegisApps(config.monitoredRepo);
+		if (installedApps.length > 0) {
+			await setupDetectedGitHubApp(config, installedApps);
+		}
+	}
+
+	if (!hasGitHubAppConfig(config) && !config.githubToken) {
 		const method = await promptSelect("Auth method:", [
 			{ label: "One-click GitHub App (recommended)", value: "app-flow" },
 			{ label: "GitHub token (quick local test)", value: "token" },
@@ -202,6 +226,7 @@ async function setupGitHubAppFlow(config: AegisCliConfig): Promise<void> {
 		config.githubWebhookSecret = app.webhookSecret;
 		config.githubToken = undefined;
 		saveConfig(config);
+		saveGitHubAppCache(config);
 		consola.success(`Saved GitHub App credentials to ${resolveEnvFileForWrite()}.`);
 	} catch (error) {
 		consola.warn(error instanceof Error ? error.message : String(error));
@@ -217,14 +242,76 @@ async function setupGitHubAppManual(config: AegisCliConfig): Promise<void> {
 		"If that sounds unfamiliar, cancel and rerun setup with the one-click GitHub App option.",
 	]);
 	config.githubAppId = await promptText("GitHub App ID:", config.githubAppId);
-	const keyPath = await promptText("Path to GitHub App private key .pem:", undefined);
-	if (keyPath) {
-		const resolved = resolve(keyPath.replace(/^~/, process.env.HOME ?? "~"));
-		if (existsSync(resolved)) {
-			config.githubAppPrivateKey = Buffer.from(readFileSync(resolved, "utf-8")).toString("base64");
-			consola.success("Loaded private key");
-		} else {
-			consola.warn(`File not found: ${resolved}`);
+	await promptGitHubAppPrivateKey(config);
+	config.githubInstallationId = await promptText(
+		"GitHub App installation ID:",
+		config.githubInstallationId,
+	);
+	config.githubToken = undefined;
+}
+
+async function setupDetectedGitHubApp(
+	config: AegisCliConfig,
+	installedApps: InstalledGitHubApp[],
+): Promise<void> {
+	const installationId =
+		installedApps.length === 1
+			? installedApps[0].installationId
+			: await promptSelect(
+					"Existing Aegis GitHub App:",
+					installedApps.map((app) => ({
+						label: `${app.slug} (installation ${app.installationId})`,
+						value: app.installationId,
+					})),
+				);
+	const selected = installedApps.find((app) => app.installationId === installationId);
+	if (!selected) return;
+
+	printStep("Existing Aegis GitHub App found", [
+		`Found ${selected.slug} installed on this GitHub org.`,
+		"GitHub does not let Aegis read an old private key back.",
+		"To reuse this app, Aegis will help you generate one new private key.",
+		"If you would rather create a fresh app, answer no.",
+	]);
+	const useExisting = await promptConfirm("Reuse this installed GitHub App?", true);
+	if (!useExisting) return;
+
+	config.githubAppId = selected.appId;
+	config.githubInstallationId = selected.installationId;
+	config.githubToken = undefined;
+	await promptGitHubAppPrivateKey(config, selected.settingsUrl);
+	saveConfig(config);
+	saveGitHubAppCache(config);
+	consola.success(`Saved existing GitHub App credentials to ${resolveEnvFileForWrite()}.`);
+}
+
+async function promptGitHubAppPrivateKey(
+	config: AegisCliConfig,
+	settingsUrl?: string,
+): Promise<void> {
+	printStep("GitHub App private key", [
+		settingsUrl ? `Opening: ${settingsUrl}` : "Open the GitHub App settings page.",
+		"Click Generate a private key.",
+		"Aegis will watch Downloads/Desktop and load the downloaded .pem automatically.",
+		"GitHub only gives private keys at creation/download time; Aegis cannot fetch old keys.",
+	]);
+	const startedAt = Date.now();
+	if (settingsUrl) openBrowser(settingsUrl);
+	const detected = settingsUrl ? await waitForDownloadedPem(startedAt) : undefined;
+	if (detected) {
+		loadPrivateKey(config, detected);
+		consola.success(`Loaded private key from ${detected}`);
+	}
+	if (!config.githubAppPrivateKey) {
+		const keyPath = await promptText("Path to GitHub App private key .pem:", undefined);
+		if (keyPath) {
+			const resolved = resolve(keyPath.replace(/^~/, process.env.HOME ?? "~"));
+			if (existsSync(resolved)) {
+				loadPrivateKey(config, resolved);
+				consola.success("Loaded private key");
+			} else {
+				consola.warn(`File not found: ${resolved}`);
+			}
 		}
 	}
 	if (!config.githubAppPrivateKey) {
@@ -232,17 +319,122 @@ async function setupGitHubAppManual(config: AegisCliConfig): Promise<void> {
 			await promptText("Paste GitHub App private key PEM:", config.githubAppPrivateKey),
 		).toString("base64");
 	}
-	config.githubInstallationId = await promptText(
-		"GitHub App installation ID:",
-		config.githubInstallationId,
-	);
-	config.githubToken = undefined;
+}
+
+async function waitForDownloadedPem(startedAt: number): Promise<string | undefined> {
+	consola.info("Waiting up to 2 minutes for a new .pem file in Downloads or Desktop...");
+	for (let attempt = 0; attempt < 120; attempt += 1) {
+		const candidates = findRecentPemFiles(startedAt - 5_000);
+		if (candidates.length === 1) return candidates[0].path;
+		if (candidates.length > 1) {
+			return await promptSelect(
+				"Downloaded private key:",
+				candidates.map((file) => ({
+					label: file.path,
+					value: file.path,
+				})),
+			);
+		}
+		await sleep(1000);
+	}
+	consola.warn("No new .pem file detected.");
+	return undefined;
+}
+
+function findRecentPemFiles(sinceMs: number): PemFile[] {
+	const home = process.env.HOME;
+	if (!home) return [];
+	const dirs = [resolve(home, "Downloads"), resolve(home, "Desktop")];
+	const files: PemFile[] = [];
+	for (const dir of dirs) {
+		try {
+			for (const entry of readdirSync(dir)) {
+				if (!entry.toLowerCase().endsWith(".pem")) continue;
+				const path = resolve(dir, entry);
+				const stat = statSync(path);
+				if (stat.isFile() && stat.mtimeMs >= sinceMs) {
+					files.push({ path, mtimeMs: stat.mtimeMs });
+				}
+			}
+		} catch {
+			// Ignore missing/unreadable directories.
+		}
+	}
+	return files.sort((a, b) => b.mtimeMs - a.mtimeMs).slice(0, 5);
+}
+
+function loadPrivateKey(config: AegisCliConfig, path: string): void {
+	config.githubAppPrivateKey = Buffer.from(readFileSync(path, "utf-8")).toString("base64");
+}
+
+function sleep(ms: number): Promise<void> {
+	return new Promise((resolveSleep) => setTimeout(resolveSleep, ms));
 }
 
 function hasGitHubAppConfig(config: AegisCliConfig): boolean {
 	return Boolean(config.githubAppId && config.githubAppPrivateKey && config.githubInstallationId);
 }
 
+function detectInstalledAegisApps(monitoredRepo: string | undefined): InstalledGitHubApp[] {
+	if (!monitoredRepo) return [];
+	const [owner, repo] = monitoredRepo.split("/");
+	if (!owner || !repo) return [];
+
+	const payload = runGhApi<{ installations?: GitHubInstallation[] }>([
+		"api",
+		`orgs/${owner}/installations`,
+	]);
+	const installations = payload?.installations ?? [];
+	const repoSlug = slugify(repo);
+	const ownerSlug = slugify(owner);
+	const aegisApps = installations
+		.filter((installation) => installation.app_slug?.startsWith("aegis"))
+		.map((installation) => ({
+			appId: String(installation.app_id),
+			installationId: String(installation.id),
+			slug: installation.app_slug,
+			settingsUrl: `https://github.com/organizations/${owner}/settings/apps/${installation.app_slug}`,
+		}));
+	const repoMatches = aegisApps.filter(
+		(app) => app.slug.includes(repoSlug) || app.slug.includes(`${ownerSlug}-${repoSlug}`),
+	);
+	return repoMatches.length > 0 ? repoMatches : aegisApps;
+}
+
+type GitHubInstallation = {
+	id: number;
+	app_id: number;
+	app_slug: string;
+};
+
+function runGhApi<T>(args: string[]): T | undefined {
+	try {
+		return JSON.parse(
+			execFileSync("gh", args, {
+				encoding: "utf-8",
+				stdio: ["ignore", "pipe", "ignore"],
+			}),
+		) as T;
+	} catch {
+		return undefined;
+	}
+}
+
+function openBrowser(url: string): void {
+	const command =
+		process.platform === "darwin" ? "open" : process.platform === "win32" ? "cmd" : "xdg-open";
+	const args = process.platform === "win32" ? ["/c", "start", "", url] : [url];
+	const child = spawn(command, args, { detached: true, stdio: "ignore" });
+	child.unref();
+}
+
+function slugify(value: string): string {
+	return value
+		.toLowerCase()
+		.replace(/[^a-z0-9]+/g, "-")
+		.replace(/^-|-$/g, "");
+}
+
 async function setupLinear(config: AegisCliConfig): Promise<void> {
 	printStep("Step 4: optional Linear connection", [
 		"Use this only if your team tracks bugs in Linear.",

package/src/cli/github-app-cache.ts

@@ -0,0 +1,76 @@
+import { chmodSync, existsSync, mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { dirname, resolve } from "node:path";
+import type { AegisCliConfig } from "../shared/types.js";
+
+type CachedGitHubApp = {
+	appId: string;
+	privateKey: string;
+	installationId: string;
+	webhookSecret?: string;
+};
+
+export function restoreGitHubAppCache(config: AegisCliConfig): boolean {
+	if (!config.monitoredRepo || hasGitHubAppConfig(config)) return false;
+	const cached = readGitHubAppCache(config.monitoredRepo);
+	if (!cached) return false;
+	config.githubAppId = cached.appId;
+	config.githubAppPrivateKey = cached.privateKey;
+	config.githubInstallationId = cached.installationId;
+	config.githubWebhookSecret ??= cached.webhookSecret;
+	config.githubToken = undefined;
+	return true;
+}
+
+export function saveGitHubAppCache(config: AegisCliConfig): void {
+	if (!config.monitoredRepo || !hasGitHubAppConfig(config)) return;
+	const file = getGitHubAppCacheFile(config.monitoredRepo);
+	const lines = [
+		"# Aegis GitHub App cache. Do not share this file.",
+		`GITHUB_APP_ID=${config.githubAppId}`,
+		`GITHUB_APP_PRIVATE_KEY=${config.githubAppPrivateKey}`,
+		`GITHUB_INSTALLATION_ID=${config.githubInstallationId}`,
+		config.githubWebhookSecret ? `GITHUB_WEBHOOK_SECRET=${config.githubWebhookSecret}` : undefined,
+	].filter(Boolean);
+	mkdirSync(dirname(file), { recursive: true });
+	writeFileSync(file, `${lines.join("\n")}\n`, { mode: 0o600 });
+	chmodSync(file, 0o600);
+}
+
+function readGitHubAppCache(monitoredRepo: string): CachedGitHubApp | undefined {
+	const file = getGitHubAppCacheFile(monitoredRepo);
+	if (!existsSync(file)) return undefined;
+	const values = new Map<string, string>();
+	for (const line of readFileSync(file, "utf-8").split("\n")) {
+		const trimmed = line.trim();
+		if (!trimmed || trimmed.startsWith("#")) continue;
+		const idx = trimmed.indexOf("=");
+		if (idx === -1) continue;
+		values.set(trimmed.slice(0, idx), trimmed.slice(idx + 1));
+	}
+	const appId = values.get("GITHUB_APP_ID");
+	const privateKey = values.get("GITHUB_APP_PRIVATE_KEY");
+	const installationId = values.get("GITHUB_INSTALLATION_ID");
+	if (!appId || !privateKey || !installationId) return undefined;
+	return {
+		appId,
+		privateKey,
+		installationId,
+		webhookSecret: values.get("GITHUB_WEBHOOK_SECRET"),
+	};
+}
+
+function hasGitHubAppConfig(config: AegisCliConfig): boolean {
+	return Boolean(config.githubAppId && config.githubAppPrivateKey && config.githubInstallationId);
+}
+
+export function getGitHubAppCacheFile(monitoredRepo: string): string {
+	const home = process.env.HOME ?? process.cwd();
+	return resolve(home, ".aegis", "github-apps", `${slugify(monitoredRepo)}.env`);
+}
+
+function slugify(value: string): string {
+	return value
+		.toLowerCase()
+		.replace(/[^a-z0-9]+/g, "-")
+		.replace(/^-|-$/g, "");
+}