@nairon-ai/aegis 0.4.3 → 0.4.5

package/README.md

@@ -68,11 +68,13 @@ If you see `No ready bugs found`, check `MONITORED_REPO`, exact label names, iss
 
 During `setup`, choose one:
 
-- `One-click GitHub App`: recommended. Aegis opens a browser page, creates the app, asks you to install it on the repo, then saves the credentials.
+- `One-click GitHub App`: recommended. Aegis opens a browser page, creates the app, asks you to install it on the repo, then saves the credentials. If you rerun setup later, Aegis reuses the existing app instead of creating another one.
 - `GitHub token`: quick local test if you already know how to create fine-grained GitHub tokens.
 - `Paste existing GitHub App credentials`: only if you already made an app manually.
 
-Aegis auto-detects `git remote origin` when you run setup inside your product repo, so it normally will not ask which repo to monitor. If no GitHub origin exists, it asks for `owner/repo` or a full GitHub URL like `https://github.com/KeyLead-Team/keylead`.
+Aegis auto-detects `git remote origin` and origin's default branch when you run setup inside your product repo, so it normally will not ask which repo or base branch to use. If no GitHub origin exists, it asks for `owner/repo` or a full GitHub URL like `https://github.com/KeyLead-Team/keylead`.
+
+If you connect Linear, Aegis fetches your Linear teams after you paste the API key and lets you choose by name, for example `Engineering (ENG)`. You do not need to hunt for Linear UUIDs manually.
 
 ### Deployed AFK Mode
 

package/dist-node/cli/commands/setup.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/setup.ts"],"names":[],"mappings":"AAmBA,eAAO,MAAM,YAAY,qDAKvB,CAAC;AAEH,wBAAsB,cAAc,IAAI,OAAO,CAAC,IAAI,CAAC,CAoCpD"}
+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/setup.ts"],"names":[],"mappings":"AAyBA,eAAO,MAAM,YAAY,qDAKvB,CAAC;AAEH,wBAAsB,cAAc,IAAI,OAAO,CAAC,IAAI,CAAC,CAoCpD"}

package/dist-node/cli/commands/setup.js

@@ -44,8 +44,8 @@ export async function runSetupWizard() {
     }
     catch (error) {
         if (error instanceof SetupCancelledError) {
-            consola.log("\nSetup cancelled. No config changes were saved.");
-            consola.log("If you already installed a GitHub App in the browser, uninstall it from GitHub if you do not want Aegis connected.");
+            consola.log("\nSetup cancelled before the final save.");
+            consola.log("If GitHub App credentials were created in the browser, Aegis saved them immediately so rerun setup can reuse them.");
             process.exitCode = 130;
             return;
         }
@@ -75,11 +75,27 @@ async function setupRepo(config) {
         ]);
         config.monitoredRepo = normalizeGitHubRepo(await promptText("Repo to monitor:", undefined));
     }
-    printStep("Step 2: choose the base branch", [
-        "This is the branch Aegis will open PRs against.",
-        "Most repos use main. If your repo uses master, develop, or staging, enter that.",
-    ]);
-    config.baseBranch = await promptText("Base branch:", config.baseBranch ?? detectCurrentBranch());
+    const detectedBaseBranch = detectOriginDefaultBranch();
+    if (detectedBaseBranch) {
+        config.baseBranch = detectedBaseBranch;
+        printStep("Step 2: base branch Aegis will target", [
+            `Using ${detectedBaseBranch} from origin's default branch.`,
+            "Aegis will open PRs against this branch.",
+        ]);
+    }
+    else if (config.baseBranch) {
+        printStep("Step 2: base branch Aegis will target", [
+            `Using ${config.baseBranch} from existing .aegis config.`,
+            "Aegis will open PRs against this branch.",
+        ]);
+    }
+    else {
+        config.baseBranch = "main";
+        printStep("Step 2: base branch Aegis will target", [
+            "Could not detect origin's default branch.",
+            "Using main. If your repo uses a different default branch, edit BASE_BRANCH in .aegis/.env after setup.",
+        ]);
+    }
 }
 async function setupGitHub(config) {
     printStep("Step 3: give Aegis GitHub access", [
@@ -87,59 +103,29 @@ async function setupGitHub(config) {
         "If you are unsure, choose the one-click GitHub App. It opens GitHub in your browser and avoids manual tokens.",
         "Use a GitHub token only if you already know how to create fine-grained tokens.",
     ]);
-    const method = await promptSelect("Auth method:", [
-        { label: "One-click GitHub App (recommended)", value: "app-flow" },
-        { label: "GitHub token (quick local test)", value: "token" },
-        { label: "Paste existing GitHub App credentials", value: "app-manual" },
-    ]);
-    if (method === "token") {
-        printStep("Create a fine-grained GitHub token", [
-            "Open: https://github.com/settings/personal-access-tokens/new",
-            "Token name: Aegis",
-            "Repository access: Only select repositories, then choose the repo from Step 1.",
-            "Repository permissions: Contents read/write, Issues read/write, Pull requests read/write.",
-            "Metadata stays read-only automatically.",
-            "Click Generate token, then paste the token here. It usually starts with github_pat_.",
-            "Keep it secret. Aegis saves it to .aegis/.env, which should not be committed.",
+    if (hasGitHubAppConfig(config)) {
+        consola.info(`Using existing GitHub App installation ${config.githubInstallationId}. Rerun disconnect if you want to remove it.`);
+        config.githubToken = undefined;
+    }
+    else if (config.githubToken) {
+        consola.info("Using existing GitHub token from .aegis config.");
+    }
+    else {
+        const method = await promptSelect("Auth method:", [
+            { label: "One-click GitHub App (recommended)", value: "app-flow" },
+            { label: "GitHub token (quick local test)", value: "token" },
+            { label: "Paste existing GitHub App credentials", value: "app-manual" },
         ]);
-        config.githubToken = await promptText("Paste GitHub token:", config.githubToken);
-        config.githubAppId = undefined;
-        config.githubAppPrivateKey = undefined;
-        config.githubInstallationId = undefined;
-    }
-    else if (method === "app-flow") {
-        if (!config.monitoredRepo) {
-            consola.warn("Set the monitored repo first.");
-            return;
+        if (method === "token") {
+            await setupGitHubToken(config);
         }
-        printStep("Create the GitHub App in your browser", [
-            "Aegis will open a local setup page.",
-            "Click Create GitHub App.",
-            "Then click Install and choose Only select repositories.",
-            "Select the repo from Step 1, then approve the install.",
-            "When GitHub sends you back, this CLI saves the credentials automatically.",
-        ]);
-        try {
-            const app = await runGitHubAppFlow({
-                monitoredRepo: config.monitoredRepo,
-                workerUrl: config.workerUrl,
-            });
-            config.githubAppId = app.appId;
-            config.githubAppPrivateKey = Buffer.from(app.privateKey, "utf-8").toString("base64");
-            config.githubInstallationId = app.installationId;
-            config.githubWebhookSecret = app.webhookSecret;
-            config.githubToken = undefined;
-            consola.success("Saved GitHub App credentials from GitHub.");
+        else if (method === "app-flow") {
+            await setupGitHubAppFlow(config);
         }
-        catch (error) {
-            consola.warn(error instanceof Error ? error.message : String(error));
-            consola.info("Falling back to manual GitHub App credentials.");
+        else {
             await setupGitHubAppManual(config);
         }
     }
-    else {
-        await setupGitHubAppManual(config);
-    }
     if (config.githubWebhookSecret) {
         consola.info("GitHub webhook secret is already configured.");
         return;
@@ -157,6 +143,52 @@ async function setupGitHub(config) {
         consola.info("Use this same value when you add the GitHub App or repo webhook.");
     }
 }
+async function setupGitHubToken(config) {
+    printStep("Create a fine-grained GitHub token", [
+        "Open: https://github.com/settings/personal-access-tokens/new",
+        "Token name: Aegis",
+        "Repository access: Only select repositories, then choose the repo from Step 1.",
+        "Repository permissions: Contents read/write, Issues read/write, Pull requests read/write.",
+        "Metadata stays read-only automatically.",
+        "Click Generate token, then paste the token here. It usually starts with github_pat_.",
+        "Keep it secret. Aegis saves it to .aegis/.env, which should not be committed.",
+    ]);
+    config.githubToken = await promptText("Paste GitHub token:", config.githubToken);
+    config.githubAppId = undefined;
+    config.githubAppPrivateKey = undefined;
+    config.githubInstallationId = undefined;
+}
+async function setupGitHubAppFlow(config) {
+    if (!config.monitoredRepo) {
+        consola.warn("Set the monitored repo first.");
+        return;
+    }
+    printStep("Create the GitHub App in your browser", [
+        "Aegis will open a local setup page.",
+        "Click Create GitHub App.",
+        "Then click Install and choose Only select repositories.",
+        "Select the repo from Step 1, then approve the install.",
+        "When GitHub sends you back, this CLI saves the credentials automatically.",
+    ]);
+    try {
+        const app = await runGitHubAppFlow({
+            monitoredRepo: config.monitoredRepo,
+            workerUrl: config.workerUrl,
+        });
+        config.githubAppId = app.appId;
+        config.githubAppPrivateKey = Buffer.from(app.privateKey, "utf-8").toString("base64");
+        config.githubInstallationId = app.installationId;
+        config.githubWebhookSecret = app.webhookSecret;
+        config.githubToken = undefined;
+        saveConfig(config);
+        consola.success(`Saved GitHub App credentials to ${resolveEnvFileForWrite()}.`);
+    }
+    catch (error) {
+        consola.warn(error instanceof Error ? error.message : String(error));
+        consola.info("Falling back to manual GitHub App credentials.");
+        await setupGitHubAppManual(config);
+    }
+}
 async function setupGitHubAppManual(config) {
     printStep("Paste existing GitHub App credentials", [
         "Use this only if you already created a GitHub App manually.",
@@ -181,6 +213,9 @@ async function setupGitHubAppManual(config) {
     config.githubInstallationId = await promptText("GitHub App installation ID:", config.githubInstallationId);
     config.githubToken = undefined;
 }
+function hasGitHubAppConfig(config) {
+    return Boolean(config.githubAppId && config.githubAppPrivateKey && config.githubInstallationId);
+}
 async function setupLinear(config) {
     printStep("Step 4: optional Linear connection", [
         "Use this only if your team tracks bugs in Linear.",
@@ -195,6 +230,7 @@ async function setupLinear(config) {
         "Aegis uses it to read ready bug tickets and comment with status updates.",
     ]);
     config.linearApiKey = await promptText("Linear API key:", config.linearApiKey);
+    await setupLinearTeam(config);
     printStep("Linear webhook secret", [
         "This protects Linear webhook calls after deploy.",
         "Choose yes and Aegis will generate one.",
@@ -203,12 +239,6 @@ async function setupLinear(config) {
     config.linearWebhookSecret = generateSecret
         ? crypto.randomUUID()
         : await promptText("Linear webhook signing secret:", config.linearWebhookSecret);
-    printStep("Linear team/project", [
-        "Team ID is required so Aegis knows which Linear team to watch.",
-        "Project ID is optional. Leave it blank to watch the whole team.",
-    ]);
-    config.linearTeamId = await promptText("Linear team ID:", config.linearTeamId);
-    config.linearProjectId = await promptText("Linear project ID (optional):", config.linearProjectId);
     printStep("Linear statuses and labels", [
         "These names must match your Linear workflow.",
         "If your team uses the default names, press Enter through these prompts.",
@@ -219,6 +249,66 @@ async function setupLinear(config) {
     config.linearBlockedStatus = await promptText("Linear blocked status name:", config.linearBlockedStatus ?? "Blocked");
     config.linearBugLabel = await promptText("Linear bug label:", config.linearBugLabel ?? "bug");
 }
+async function setupLinearTeam(config) {
+    if (!config.linearApiKey)
+        return;
+    printStep("Linear team/project", [
+        "Aegis will fetch your Linear teams so you can pick one by name.",
+        "Project ID is optional. Leave it blank to watch the whole team.",
+    ]);
+    try {
+        const teams = await fetchLinearTeams(config.linearApiKey);
+        if (teams.length === 0) {
+            consola.warn("No Linear teams were returned for this API key.");
+            config.linearTeamId = await promptText("Linear team ID:", config.linearTeamId);
+        }
+        else if (teams.length === 1) {
+            const team = teams[0];
+            config.linearTeamId = team.id;
+            consola.info(`Using Linear team ${formatLinearTeam(team)}.`);
+        }
+        else {
+            config.linearTeamId = await promptSelect("Linear team:", teams.map((team) => ({
+                label: formatLinearTeam(team),
+                value: team.id,
+            })), config.linearTeamId);
+        }
+    }
+    catch (error) {
+        consola.warn(`Could not fetch Linear teams: ${error instanceof Error ? error.message : String(error)}`);
+        consola.info("Falling back to manual Linear team ID.");
+        config.linearTeamId = await promptText("Linear team ID:", config.linearTeamId);
+    }
+    config.linearProjectId = await promptText("Linear project ID (optional, blank = whole team):", config.linearProjectId);
+}
+async function fetchLinearTeams(apiKey) {
+    const result = await linearGraphql(apiKey, `query Teams {
+			teams {
+				nodes { id name key }
+			}
+		}`);
+    return result.teams.nodes.sort((a, b) => a.name.localeCompare(b.name));
+}
+async function linearGraphql(apiKey, query) {
+    const response = await fetch("https://api.linear.app/graphql", {
+        method: "POST",
+        headers: {
+            Authorization: apiKey,
+            "Content-Type": "application/json",
+        },
+        body: JSON.stringify({ query }),
+    });
+    const payload = (await response.json());
+    if (!response.ok || payload.errors?.length) {
+        throw new Error(`Linear API failed: ${response.status} ${payload.errors?.map((error) => error.message).join("; ") ?? ""}`);
+    }
+    if (!payload.data)
+        throw new Error("Linear API returned no data.");
+    return payload.data;
+}
+function formatLinearTeam(team) {
+    return `${team.name} (${team.key})`;
+}
 async function setupAutomation(config) {
     printStep("Step 5: GitHub labels Aegis should watch", [
         "Aegis only picks up open issues with both labels.",
@@ -364,17 +454,44 @@ function detectOriginGitHubRepo() {
         return undefined;
     }
 }
-function detectCurrentBranch() {
+function detectOriginDefaultBranch() {
+    const localRemoteHead = runGit([
+        "symbolic-ref",
+        "--quiet",
+        "--short",
+        "refs/remotes/origin/HEAD",
+    ]);
+    if (localRemoteHead?.startsWith("origin/")) {
+        return localRemoteHead.replace("origin/", "");
+    }
+    const remoteDetails = runGit(["remote", "show", "origin"]);
+    const remoteHead = remoteDetails?.match(/HEAD branch:\s*(.+)/)?.[1]?.trim();
+    if (remoteHead)
+        return remoteHead;
     try {
         const branch = readFileSync(".git/HEAD", "utf-8").trim();
         if (branch.startsWith("ref: refs/heads/")) {
-            return branch.replace("ref: refs/heads/", "");
+            const currentBranch = branch.replace("ref: refs/heads/", "");
+            if (["main", "master", "develop", "development", "staging"].includes(currentBranch)) {
+                return currentBranch;
+            }
         }
     }
     catch {
-        // Ignore and fall back to the normal default.
+        // Ignore and fall back below.
+    }
+    return undefined;
+}
+function runGit(args) {
+    try {
+        return execFileSync("git", args, {
+            encoding: "utf-8",
+            stdio: ["ignore", "pipe", "ignore"],
+        }).trim();
+    }
+    catch {
+        return undefined;
     }
-    return "main";
 }
 function printStep(title, lines) {
     consola.log(`\n${title}`);

package/dist-node/cli/commands/setup.js.map

@@ -1 +1 @@
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package/docs/SETUP.md

@@ -152,8 +152,9 @@ npx @nairon-ai/aegis setup
 Important answers:
 
 - `Repo to monitor`: Aegis detects `git remote origin` when you run setup inside your product repo, so this is normally automatic. If no GitHub origin exists, paste `acme/web-app` / `https://github.com/acme/web-app`.
-- `Base branch`: usually `main`
-- GitHub auth: use `One-click GitHub App` unless you already know how to create a fine-grained GitHub token
+- `Base branch`: Aegis detects origin's default branch automatically. If detection fails, it uses `main`; edit `BASE_BRANCH` in `.aegis/.env` only if your repo uses something else.
+- GitHub auth: use `One-click GitHub App` unless you already know how to create a fine-grained GitHub token. If setup already saved a GitHub App, Aegis reuses it on reruns.
+- Linear team: after you paste the Linear API key, Aegis fetches your teams and lets you choose by name. You do not need to copy the Linear team UUID manually.
 - `GitHub webhook secret`: generate one and keep it in `.aegis/.env`
 - `Automation mode`: start with `plan-first`
 - `Context profile`: start with `minimal`
@@ -326,7 +327,7 @@ Resource types: Issue, Comment
 
 Configure Linear to match the setup wizard:
 
-- Team ID
+- Team selected in setup
 - Optional project ID
 - Ready status, default `Ready to Implement`
 - Bug label, default `bug`

package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@nairon-ai/aegis",
-	"version": "0.4.3",
+	"version": "0.4.5",
 	"description": "Self-hosted AFK bug-fixing agent for GitHub Issues and Linear",
 	"type": "module",
 	"repository": {

package/src/cli/commands/setup.ts

@@ -10,6 +10,12 @@ import { detectSetupState, printState, saveConfig } from "../state.js";
 
 type PromptOptions = NonNullable<Parameters<typeof consola.prompt>[1]>;
 
+type LinearTeam = {
+	id: string;
+	name: string;
+	key: string;
+};
+
 class SetupCancelledError extends Error {
 	constructor() {
 		super("Setup cancelled.");
@@ -51,9 +57,9 @@ export async function runSetupWizard(): Promise<void> {
 		consola.log("");
 	} catch (error) {
 		if (error instanceof SetupCancelledError) {
-			consola.log("\nSetup cancelled. No config changes were saved.");
+			consola.log("\nSetup cancelled before the final save.");
 			consola.log(
-				"If you already installed a GitHub App in the browser, uninstall it from GitHub if you do not want Aegis connected.",
+				"If GitHub App credentials were created in the browser, Aegis saved them immediately so rerun setup can reuse them.",
 			);
 			process.exitCode = 130;
 			return;
@@ -84,11 +90,25 @@ async function setupRepo(config: AegisCliConfig): Promise<void> {
 		config.monitoredRepo = normalizeGitHubRepo(await promptText("Repo to monitor:", undefined));
 	}
 
-	printStep("Step 2: choose the base branch", [
-		"This is the branch Aegis will open PRs against.",
-		"Most repos use main. If your repo uses master, develop, or staging, enter that.",
-	]);
-	config.baseBranch = await promptText("Base branch:", config.baseBranch ?? detectCurrentBranch());
+	const detectedBaseBranch = detectOriginDefaultBranch();
+	if (detectedBaseBranch) {
+		config.baseBranch = detectedBaseBranch;
+		printStep("Step 2: base branch Aegis will target", [
+			`Using ${detectedBaseBranch} from origin's default branch.`,
+			"Aegis will open PRs against this branch.",
+		]);
+	} else if (config.baseBranch) {
+		printStep("Step 2: base branch Aegis will target", [
+			`Using ${config.baseBranch} from existing .aegis config.`,
+			"Aegis will open PRs against this branch.",
+		]);
+	} else {
+		config.baseBranch = "main";
+		printStep("Step 2: base branch Aegis will target", [
+			"Could not detect origin's default branch.",
+			"Using main. If your repo uses a different default branch, edit BASE_BRANCH in .aegis/.env after setup.",
+		]);
+	}
 }
 
 async function setupGitHub(config: AegisCliConfig): Promise<void> {
@@ -97,56 +117,28 @@ async function setupGitHub(config: AegisCliConfig): Promise<void> {
 		"If you are unsure, choose the one-click GitHub App. It opens GitHub in your browser and avoids manual tokens.",
 		"Use a GitHub token only if you already know how to create fine-grained tokens.",
 	]);
-	const method = await promptSelect("Auth method:", [
-		{ label: "One-click GitHub App (recommended)", value: "app-flow" },
-		{ label: "GitHub token (quick local test)", value: "token" },
-		{ label: "Paste existing GitHub App credentials", value: "app-manual" },
-	]);
 
-	if (method === "token") {
-		printStep("Create a fine-grained GitHub token", [
-			"Open: https://github.com/settings/personal-access-tokens/new",
-			"Token name: Aegis",
-			"Repository access: Only select repositories, then choose the repo from Step 1.",
-			"Repository permissions: Contents read/write, Issues read/write, Pull requests read/write.",
-			"Metadata stays read-only automatically.",
-			"Click Generate token, then paste the token here. It usually starts with github_pat_.",
-			"Keep it secret. Aegis saves it to .aegis/.env, which should not be committed.",
-		]);
-		config.githubToken = await promptText("Paste GitHub token:", config.githubToken);
-		config.githubAppId = undefined;
-		config.githubAppPrivateKey = undefined;
-		config.githubInstallationId = undefined;
-	} else if (method === "app-flow") {
-		if (!config.monitoredRepo) {
-			consola.warn("Set the monitored repo first.");
-			return;
-		}
-		printStep("Create the GitHub App in your browser", [
-			"Aegis will open a local setup page.",
-			"Click Create GitHub App.",
-			"Then click Install and choose Only select repositories.",
-			"Select the repo from Step 1, then approve the install.",
-			"When GitHub sends you back, this CLI saves the credentials automatically.",
+	if (hasGitHubAppConfig(config)) {
+		consola.info(
+			`Using existing GitHub App installation ${config.githubInstallationId}. Rerun disconnect if you want to remove it.`,
+		);
+		config.githubToken = undefined;
+	} else if (config.githubToken) {
+		consola.info("Using existing GitHub token from .aegis config.");
+	} else {
+		const method = await promptSelect("Auth method:", [
+			{ label: "One-click GitHub App (recommended)", value: "app-flow" },
+			{ label: "GitHub token (quick local test)", value: "token" },
+			{ label: "Paste existing GitHub App credentials", value: "app-manual" },
 		]);
-		try {
-			const app = await runGitHubAppFlow({
-				monitoredRepo: config.monitoredRepo,
-				workerUrl: config.workerUrl,
-			});
-			config.githubAppId = app.appId;
-			config.githubAppPrivateKey = Buffer.from(app.privateKey, "utf-8").toString("base64");
-			config.githubInstallationId = app.installationId;
-			config.githubWebhookSecret = app.webhookSecret;
-			config.githubToken = undefined;
-			consola.success("Saved GitHub App credentials from GitHub.");
-		} catch (error) {
-			consola.warn(error instanceof Error ? error.message : String(error));
-			consola.info("Falling back to manual GitHub App credentials.");
+
+		if (method === "token") {
+			await setupGitHubToken(config);
+		} else if (method === "app-flow") {
+			await setupGitHubAppFlow(config);
+		} else {
 			await setupGitHubAppManual(config);
 		}
-	} else {
-		await setupGitHubAppManual(config);
 	}
 
 	if (config.githubWebhookSecret) {
@@ -171,6 +163,53 @@ async function setupGitHub(config: AegisCliConfig): Promise<void> {
 	}
 }
 
+async function setupGitHubToken(config: AegisCliConfig): Promise<void> {
+	printStep("Create a fine-grained GitHub token", [
+		"Open: https://github.com/settings/personal-access-tokens/new",
+		"Token name: Aegis",
+		"Repository access: Only select repositories, then choose the repo from Step 1.",
+		"Repository permissions: Contents read/write, Issues read/write, Pull requests read/write.",
+		"Metadata stays read-only automatically.",
+		"Click Generate token, then paste the token here. It usually starts with github_pat_.",
+		"Keep it secret. Aegis saves it to .aegis/.env, which should not be committed.",
+	]);
+	config.githubToken = await promptText("Paste GitHub token:", config.githubToken);
+	config.githubAppId = undefined;
+	config.githubAppPrivateKey = undefined;
+	config.githubInstallationId = undefined;
+}
+
+async function setupGitHubAppFlow(config: AegisCliConfig): Promise<void> {
+	if (!config.monitoredRepo) {
+		consola.warn("Set the monitored repo first.");
+		return;
+	}
+	printStep("Create the GitHub App in your browser", [
+		"Aegis will open a local setup page.",
+		"Click Create GitHub App.",
+		"Then click Install and choose Only select repositories.",
+		"Select the repo from Step 1, then approve the install.",
+		"When GitHub sends you back, this CLI saves the credentials automatically.",
+	]);
+	try {
+		const app = await runGitHubAppFlow({
+			monitoredRepo: config.monitoredRepo,
+			workerUrl: config.workerUrl,
+		});
+		config.githubAppId = app.appId;
+		config.githubAppPrivateKey = Buffer.from(app.privateKey, "utf-8").toString("base64");
+		config.githubInstallationId = app.installationId;
+		config.githubWebhookSecret = app.webhookSecret;
+		config.githubToken = undefined;
+		saveConfig(config);
+		consola.success(`Saved GitHub App credentials to ${resolveEnvFileForWrite()}.`);
+	} catch (error) {
+		consola.warn(error instanceof Error ? error.message : String(error));
+		consola.info("Falling back to manual GitHub App credentials.");
+		await setupGitHubAppManual(config);
+	}
+}
+
 async function setupGitHubAppManual(config: AegisCliConfig): Promise<void> {
 	printStep("Paste existing GitHub App credentials", [
 		"Use this only if you already created a GitHub App manually.",
@@ -200,6 +239,10 @@ async function setupGitHubAppManual(config: AegisCliConfig): Promise<void> {
 	config.githubToken = undefined;
 }
 
+function hasGitHubAppConfig(config: AegisCliConfig): boolean {
+	return Boolean(config.githubAppId && config.githubAppPrivateKey && config.githubInstallationId);
+}
+
 async function setupLinear(config: AegisCliConfig): Promise<void> {
 	printStep("Step 4: optional Linear connection", [
 		"Use this only if your team tracks bugs in Linear.",
@@ -214,6 +257,8 @@ async function setupLinear(config: AegisCliConfig): Promise<void> {
 		"Aegis uses it to read ready bug tickets and comment with status updates.",
 	]);
 	config.linearApiKey = await promptText("Linear API key:", config.linearApiKey);
+	await setupLinearTeam(config);
+
 	printStep("Linear webhook secret", [
 		"This protects Linear webhook calls after deploy.",
 		"Choose yes and Aegis will generate one.",
@@ -225,15 +270,6 @@ async function setupLinear(config: AegisCliConfig): Promise<void> {
 	config.linearWebhookSecret = generateSecret
 		? crypto.randomUUID()
 		: await promptText("Linear webhook signing secret:", config.linearWebhookSecret);
-	printStep("Linear team/project", [
-		"Team ID is required so Aegis knows which Linear team to watch.",
-		"Project ID is optional. Leave it blank to watch the whole team.",
-	]);
-	config.linearTeamId = await promptText("Linear team ID:", config.linearTeamId);
-	config.linearProjectId = await promptText(
-		"Linear project ID (optional):",
-		config.linearProjectId,
-	);
 	printStep("Linear statuses and labels", [
 		"These names must match your Linear workflow.",
 		"If your team uses the default names, press Enter through these prompts.",
@@ -257,6 +293,84 @@ async function setupLinear(config: AegisCliConfig): Promise<void> {
 	config.linearBugLabel = await promptText("Linear bug label:", config.linearBugLabel ?? "bug");
 }
 
+async function setupLinearTeam(config: AegisCliConfig): Promise<void> {
+	if (!config.linearApiKey) return;
+
+	printStep("Linear team/project", [
+		"Aegis will fetch your Linear teams so you can pick one by name.",
+		"Project ID is optional. Leave it blank to watch the whole team.",
+	]);
+
+	try {
+		const teams = await fetchLinearTeams(config.linearApiKey);
+		if (teams.length === 0) {
+			consola.warn("No Linear teams were returned for this API key.");
+			config.linearTeamId = await promptText("Linear team ID:", config.linearTeamId);
+		} else if (teams.length === 1) {
+			const team = teams[0];
+			config.linearTeamId = team.id;
+			consola.info(`Using Linear team ${formatLinearTeam(team)}.`);
+		} else {
+			config.linearTeamId = await promptSelect(
+				"Linear team:",
+				teams.map((team) => ({
+					label: formatLinearTeam(team),
+					value: team.id,
+				})),
+				config.linearTeamId,
+			);
+		}
+	} catch (error) {
+		consola.warn(
+			`Could not fetch Linear teams: ${error instanceof Error ? error.message : String(error)}`,
+		);
+		consola.info("Falling back to manual Linear team ID.");
+		config.linearTeamId = await promptText("Linear team ID:", config.linearTeamId);
+	}
+
+	config.linearProjectId = await promptText(
+		"Linear project ID (optional, blank = whole team):",
+		config.linearProjectId,
+	);
+}
+
+async function fetchLinearTeams(apiKey: string): Promise<LinearTeam[]> {
+	const result = await linearGraphql<{ teams: { nodes: LinearTeam[] } }>(
+		apiKey,
+		`query Teams {
+			teams {
+				nodes { id name key }
+			}
+		}`,
+	);
+	return result.teams.nodes.sort((a, b) => a.name.localeCompare(b.name));
+}
+
+async function linearGraphql<T>(apiKey: string, query: string): Promise<T> {
+	const response = await fetch("https://api.linear.app/graphql", {
+		method: "POST",
+		headers: {
+			Authorization: apiKey,
+			"Content-Type": "application/json",
+		},
+		body: JSON.stringify({ query }),
+	});
+	const payload = (await response.json()) as { data?: T; errors?: Array<{ message: string }> };
+	if (!response.ok || payload.errors?.length) {
+		throw new Error(
+			`Linear API failed: ${response.status} ${
+				payload.errors?.map((error) => error.message).join("; ") ?? ""
+			}`,
+		);
+	}
+	if (!payload.data) throw new Error("Linear API returned no data.");
+	return payload.data;
+}
+
+function formatLinearTeam(team: LinearTeam): string {
+	return `${team.name} (${team.key})`;
+}
+
 async function setupAutomation(config: AegisCliConfig): Promise<void> {
 	printStep("Step 5: GitHub labels Aegis should watch", [
 		"Aegis only picks up open issues with both labels.",
@@ -435,16 +549,44 @@ function detectOriginGitHubRepo(): string | undefined {
 	}
 }
 
-function detectCurrentBranch(): string {
+function detectOriginDefaultBranch(): string | undefined {
+	const localRemoteHead = runGit([
+		"symbolic-ref",
+		"--quiet",
+		"--short",
+		"refs/remotes/origin/HEAD",
+	]);
+	if (localRemoteHead?.startsWith("origin/")) {
+		return localRemoteHead.replace("origin/", "");
+	}
+
+	const remoteDetails = runGit(["remote", "show", "origin"]);
+	const remoteHead = remoteDetails?.match(/HEAD branch:\s*(.+)/)?.[1]?.trim();
+	if (remoteHead) return remoteHead;
+
 	try {
 		const branch = readFileSync(".git/HEAD", "utf-8").trim();
 		if (branch.startsWith("ref: refs/heads/")) {
-			return branch.replace("ref: refs/heads/", "");
+			const currentBranch = branch.replace("ref: refs/heads/", "");
+			if (["main", "master", "develop", "development", "staging"].includes(currentBranch)) {
+				return currentBranch;
+			}
 		}
 	} catch {
-		// Ignore and fall back to the normal default.
+		// Ignore and fall back below.
+	}
+	return undefined;
+}
+
+function runGit(args: string[]): string | undefined {
+	try {
+		return execFileSync("git", args, {
+			encoding: "utf-8",
+			stdio: ["ignore", "pipe", "ignore"],
+		}).trim();
+	} catch {
+		return undefined;
 	}
-	return "main";
 }
 
 function printStep(title: string, lines: string[]): void {