@nahisaho/musubix-mcp-server 1.2.0 → 1.3.1

package/dist/tools/ontology-tools.js

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+/**
+ * MCP Ontology Tools - Consistency Validation
+ *
+ * @packageDocumentation
+ * @module tools/ontology-tools
+ * @traceability REQ-INT-003
+ */
+/**
+ * Consistency Validate Tool
+ *
+ * Validates knowledge graph consistency using OWL constraints.
+ */
+export const consistencyValidateTool = {
+    name: 'consistency_validate',
+    description: `Validate knowledge graph consistency using OWL constraints.
+
+Checks for:
+- Duplicate triples (exact and semantic)
+- Circular dependencies
+- Disjoint class violations
+- Functional property violations
+- Inverse functional property violations
+- Asymmetric property violations
+- Irreflexive property violations
+
+Use this tool to ensure data quality before adding to knowledge graph.`,
+    inputSchema: {
+        type: 'object',
+        properties: {
+            triples: {
+                type: 'array',
+                description: 'Array of triples to validate. Each triple has subject, predicate, object.',
+                items: {
+                    type: 'object',
+                    properties: {
+                        subject: { type: 'string', description: 'Subject URI or identifier' },
+                        predicate: { type: 'string', description: 'Predicate URI or identifier' },
+                        object: { type: 'string', description: 'Object URI, identifier, or literal value' },
+                    },
+                    required: ['subject', 'predicate', 'object'],
+                },
+            },
+            checkTypes: {
+                type: 'array',
+                description: 'Types of checks to perform. Default: all checks.',
+                items: {
+                    type: 'string',
+                    enum: ['duplicate', 'circular', 'disjoint', 'functional', 'inverse-functional', 'asymmetric', 'irreflexive'],
+                },
+            },
+            existingTriples: {
+                type: 'array',
+                description: 'Optional existing triples to check against.',
+                items: {
+                    type: 'object',
+                    properties: {
+                        subject: { type: 'string' },
+                        predicate: { type: 'string' },
+                        object: { type: 'string' },
+                    },
+                    required: ['subject', 'predicate', 'object'],
+                },
+            },
+        },
+        required: ['triples'],
+    },
+    handler: async (args) => {
+        const { triples, checkTypes, existingTriples = [] } = args;
+        try {
+            // Perform validation
+            const result = validateConsistency(triples, existingTriples, checkTypes);
+            const content = {
+                type: 'text',
+                text: formatValidationResult(result),
+            };
+            return {
+                content: [content],
+                isError: false,
+            };
+        }
+        catch (error) {
+            const content = {
+                type: 'text',
+                text: `Error during validation: ${error instanceof Error ? error.message : String(error)}`,
+            };
+            return {
+                content: [content],
+                isError: true,
+            };
+        }
+    },
+};
+/**
+ * Validate Triple Tool
+ *
+ * Validate a single triple before adding to knowledge graph.
+ */
+export const validateTripleTool = {
+    name: 'validate_triple',
+    description: `Validate a single triple before adding to knowledge graph.
+
+Quick validation for individual data entries. Returns pass/fail with details.`,
+    inputSchema: {
+        type: 'object',
+        properties: {
+            subject: {
+                type: 'string',
+                description: 'Subject URI or identifier',
+            },
+            predicate: {
+                type: 'string',
+                description: 'Predicate URI or identifier',
+            },
+            object: {
+                type: 'string',
+                description: 'Object URI, identifier, or literal value',
+            },
+            context: {
+                type: 'array',
+                description: 'Optional context triples to check against',
+                items: {
+                    type: 'object',
+                    properties: {
+                        subject: { type: 'string' },
+                        predicate: { type: 'string' },
+                        object: { type: 'string' },
+                    },
+                },
+            },
+        },
+        required: ['subject', 'predicate', 'object'],
+    },
+    handler: async (args) => {
+        const { subject, predicate, object, context = [] } = args;
+        const triple = { subject, predicate, object };
+        const result = validateSingleTriple(triple, context);
+        const content = {
+            type: 'text',
+            text: formatSingleValidation(triple, result),
+        };
+        return {
+            content: [content],
+            isError: false,
+        };
+    },
+};
+/**
+ * Check Circular Dependencies Tool
+ */
+export const checkCircularTool = {
+    name: 'check_circular',
+    description: `Check for circular dependencies in relationships.
+
+Detects cycles in dependency graphs that could cause infinite loops or inconsistencies.`,
+    inputSchema: {
+        type: 'object',
+        properties: {
+            relationships: {
+                type: 'array',
+                description: 'Array of relationships to check for cycles',
+                items: {
+                    type: 'object',
+                    properties: {
+                        from: { type: 'string', description: 'Source node' },
+                        to: { type: 'string', description: 'Target node' },
+                        type: { type: 'string', description: 'Relationship type (optional)' },
+                    },
+                    required: ['from', 'to'],
+                },
+            },
+        },
+        required: ['relationships'],
+    },
+    handler: async (args) => {
+        const { relationships } = args;
+        const cycles = findCycles(relationships);
+        const content = {
+            type: 'text',
+            text: formatCycleResult(cycles),
+        };
+        return {
+            content: [content],
+            isError: false,
+        };
+    },
+};
+// ============= Helper Functions =============
+/**
+ * Validate consistency of triples
+ */
+function validateConsistency(triples, existingTriples, checkTypes) {
+    const violations = [];
+    const allTriples = [...existingTriples, ...triples];
+    const checks = checkTypes || ['duplicate', 'circular', 'disjoint', 'functional', 'inverse-functional', 'asymmetric', 'irreflexive'];
+    // Check for duplicates
+    if (checks.includes('duplicate')) {
+        const duplicates = findDuplicates(triples, existingTriples);
+        violations.push(...duplicates);
+    }
+    // Check for circular dependencies
+    if (checks.includes('circular')) {
+        const circular = findCircularViolations(allTriples);
+        violations.push(...circular);
+    }
+    // Check functional properties
+    if (checks.includes('functional')) {
+        const functionalViolations = checkFunctionalProperties(allTriples);
+        violations.push(...functionalViolations);
+    }
+    // Count errors and warnings
+    const errors = violations.filter(v => v.severity === 'error').length;
+    const warnings = violations.filter(v => v.severity === 'warning').length;
+    return {
+        valid: errors === 0,
+        violations,
+        statistics: {
+            totalTriples: triples.length,
+            checkedConstraints: checks.length,
+            errors,
+            warnings,
+        },
+    };
+}
+/**
+ * Validate a single triple
+ */
+function validateSingleTriple(triple, context) {
+    const issues = [];
+    // Check if duplicate
+    for (const existing of context) {
+        if (existing.subject === triple.subject &&
+            existing.predicate === triple.predicate &&
+            existing.object === triple.object) {
+            issues.push('Duplicate: Exact same triple already exists');
+        }
+    }
+    // Check for self-reference (simple irreflexive check)
+    if (triple.subject === triple.object && triple.predicate.includes('parent')) {
+        issues.push('Irreflexive violation: Entity cannot be its own parent');
+    }
+    return {
+        valid: issues.length === 0,
+        issues,
+    };
+}
+/**
+ * Find duplicate triples
+ */
+function findDuplicates(newTriples, existingTriples) {
+    const violations = [];
+    const seen = new Set();
+    // Add existing triples to seen set
+    for (const t of existingTriples) {
+        seen.add(`${t.subject}|${t.predicate}|${t.object}`);
+    }
+    // Check new triples
+    for (const t of newTriples) {
+        const key = `${t.subject}|${t.predicate}|${t.object}`;
+        if (seen.has(key)) {
+            violations.push({
+                type: 'duplicate-triple',
+                severity: 'error',
+                message: `Duplicate triple detected`,
+                affectedTriples: [t],
+                suggestion: 'Remove or update the existing triple instead',
+            });
+        }
+        else {
+            seen.add(key);
+        }
+    }
+    return violations;
+}
+/**
+ * Find circular dependency violations
+ */
+function findCircularViolations(triples) {
+    const violations = [];
+    // Build adjacency graph
+    const graph = new Map();
+    for (const t of triples) {
+        if (!graph.has(t.subject)) {
+            graph.set(t.subject, []);
+        }
+        graph.get(t.subject).push(t.object);
+    }
+    // DFS for cycle detection
+    const visited = new Set();
+    const inStack = new Set();
+    function dfs(node, path) {
+        if (inStack.has(node)) {
+            return path;
+        }
+        if (visited.has(node)) {
+            return null;
+        }
+        visited.add(node);
+        inStack.add(node);
+        const neighbors = graph.get(node) || [];
+        for (const neighbor of neighbors) {
+            const cycle = dfs(neighbor, [...path, node]);
+            if (cycle) {
+                return cycle;
+            }
+        }
+        inStack.delete(node);
+        return null;
+    }
+    for (const node of graph.keys()) {
+        if (!visited.has(node)) {
+            const cycle = dfs(node, []);
+            if (cycle) {
+                violations.push({
+                    type: 'circular-dependency',
+                    severity: 'error',
+                    message: `Circular dependency detected: ${cycle.join(' → ')} → ${node}`,
+                    affectedTriples: triples.filter(t => cycle.includes(t.subject) || cycle.includes(t.object)),
+                    suggestion: 'Break the cycle by removing one of the relationships',
+                });
+                break; // Report one cycle at a time
+            }
+        }
+    }
+    return violations;
+}
+/**
+ * Check functional property violations (one value per subject+predicate)
+ */
+function checkFunctionalProperties(triples) {
+    const violations = [];
+    // Common functional properties
+    const functionalPredicates = ['hasId', 'hasParent', 'hasOwner', 'createdAt', 'modifiedAt'];
+    const subjectPredicateMap = new Map();
+    for (const t of triples) {
+        if (functionalPredicates.some(fp => t.predicate.includes(fp))) {
+            const key = `${t.subject}|${t.predicate}`;
+            if (!subjectPredicateMap.has(key)) {
+                subjectPredicateMap.set(key, []);
+            }
+            subjectPredicateMap.get(key).push(t);
+        }
+    }
+    for (const [_key, tripleList] of subjectPredicateMap) {
+        if (tripleList.length > 1) {
+            violations.push({
+                type: 'functional-property-violation',
+                severity: 'error',
+                message: `Functional property has multiple values`,
+                affectedTriples: tripleList,
+                suggestion: 'Functional properties should have exactly one value per subject',
+            });
+        }
+    }
+    return violations;
+}
+/**
+ * Find cycles in relationships
+ */
+function findCycles(relationships) {
+    const cycles = [];
+    const graph = new Map();
+    for (const rel of relationships) {
+        if (!graph.has(rel.from)) {
+            graph.set(rel.from, []);
+        }
+        graph.get(rel.from).push(rel.to);
+    }
+    const visited = new Set();
+    const recursionStack = new Set();
+    function dfs(node, path) {
+        visited.add(node);
+        recursionStack.add(node);
+        const neighbors = graph.get(node) || [];
+        for (const neighbor of neighbors) {
+            if (!visited.has(neighbor)) {
+                dfs(neighbor, [...path, node]);
+            }
+            else if (recursionStack.has(neighbor)) {
+                // Found cycle
+                const cycleStart = path.indexOf(neighbor);
+                if (cycleStart !== -1) {
+                    cycles.push([...path.slice(cycleStart), node, neighbor]);
+                }
+                else {
+                    cycles.push([...path, node, neighbor]);
+                }
+            }
+        }
+        recursionStack.delete(node);
+    }
+    for (const node of graph.keys()) {
+        if (!visited.has(node)) {
+            dfs(node, []);
+        }
+    }
+    return cycles;
+}
+/**
+ * Format validation result as text
+ */
+function formatValidationResult(result) {
+    const lines = [];
+    lines.push('# Consistency Validation Report');
+    lines.push('');
+    lines.push(`**Status**: ${result.valid ? '✅ VALID' : '❌ INVALID'}`);
+    lines.push('');
+    lines.push('## Statistics');
+    lines.push(`- Total Triples: ${result.statistics.totalTriples}`);
+    lines.push(`- Checked Constraints: ${result.statistics.checkedConstraints}`);
+    lines.push(`- Errors: ${result.statistics.errors}`);
+    lines.push(`- Warnings: ${result.statistics.warnings}`);
+    if (result.violations.length > 0) {
+        lines.push('');
+        lines.push('## Violations');
+        for (const v of result.violations) {
+            const icon = v.severity === 'error' ? '❌' : v.severity === 'warning' ? '⚠️' : 'ℹ️';
+            lines.push(`### ${icon} ${v.type}`);
+            lines.push(`- ${v.message}`);
+            if (v.suggestion) {
+                lines.push(`- Suggestion: ${v.suggestion}`);
+            }
+        }
+    }
+    return lines.join('\n');
+}
+/**
+ * Format single triple validation result
+ */
+function formatSingleValidation(triple, result) {
+    const lines = [];
+    lines.push('# Triple Validation');
+    lines.push('');
+    lines.push('## Triple');
+    lines.push(`- Subject: \`${triple.subject}\``);
+    lines.push(`- Predicate: \`${triple.predicate}\``);
+    lines.push(`- Object: \`${triple.object}\``);
+    lines.push('');
+    lines.push(`**Status**: ${result.valid ? '✅ VALID' : '❌ INVALID'}`);
+    if (result.issues.length > 0) {
+        lines.push('');
+        lines.push('## Issues');
+        for (const issue of result.issues) {
+            lines.push(`- ❌ ${issue}`);
+        }
+    }
+    return lines.join('\n');
+}
+/**
+ * Format cycle detection result
+ */
+function formatCycleResult(cycles) {
+    const lines = [];
+    lines.push('# Circular Dependency Check');
+    lines.push('');
+    if (cycles.length === 0) {
+        lines.push('✅ No circular dependencies detected.');
+    }
+    else {
+        lines.push(`❌ Found ${cycles.length} cycle(s):`);
+        lines.push('');
+        for (let i = 0; i < cycles.length; i++) {
+            lines.push(`### Cycle ${i + 1}`);
+            lines.push(`\`${cycles[i].join(' → ')}\``);
+            lines.push('');
+        }
+        lines.push('## Recommendation');
+        lines.push('Remove one relationship from each cycle to break the circular dependency.');
+    }
+    return lines.join('\n');
+}
+/**
+ * Array of all ontology tools
+ */
+export const ontologyTools = [
+    consistencyValidateTool,
+    validateTripleTool,
+    checkCircularTool,
+];
+/**
+ * Get all ontology tools
+ */
+export function getOntologyTools() {
+    return [...ontologyTools];
+}
+//# sourceMappingURL=ontology-tools.js.map

package/dist/tools/ontology-tools.js.map

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package/dist/tools/pattern-tools.d.ts

@@ -0,0 +1,50 @@
+/**
+ * @fileoverview Pattern-Ontology Integration MCP Tools
+ * @traceability TSK-INT-002
+ */
+import type { Tool, CallToolResult } from '@modelcontextprotocol/sdk/types.js';
+/**
+ * Tool: Learn from code observation
+ */
+export declare const learnPatternTool: Tool;
+/**
+ * Tool: Consolidate learned patterns
+ */
+export declare const consolidatePatternsTool: Tool;
+/**
+ * Tool: Query pattern relationships
+ */
+export declare const queryPatternRelationsTool: Tool;
+/**
+ * Tool: Search patterns
+ */
+export declare const searchPatternsTool: Tool;
+/**
+ * Tool: Get learning statistics
+ */
+export declare const getLearningStatsTool: Tool;
+/**
+ * Tool: Import patterns to knowledge graph
+ */
+export declare const importToKnowledgeGraphTool: Tool;
+/**
+ * Tool: Export knowledge graph
+ */
+export declare const exportKnowledgeGraphTool: Tool;
+/**
+ * All pattern integration tools
+ */
+export declare const patternIntegrationTools: Tool[];
+/**
+ * Get all pattern integration tools
+ */
+export declare function getPatternIntegrationTools(): Tool[];
+/**
+ * Handle pattern integration tool calls
+ */
+export declare function handlePatternIntegrationTool(name: string, args: Record<string, unknown>): Promise<CallToolResult>;
+/**
+ * Reset instances (for testing)
+ */
+export declare function resetPatternIntegration(): void;
+//# sourceMappingURL=pattern-tools.d.ts.map

package/dist/tools/pattern-tools.d.ts.map

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