npm - @nac3/forge-cli - Versions diffs - 1.0.76 → 1.0.77 - Mend

@nac3/forge-cli 1.0.76 → 1.0.77

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Files changed (14) hide show

package/dist/semantic_graph/data_model.d.ts.map +1 -1
package/dist/semantic_graph/data_model.js +63 -4
package/dist/semantic_graph/data_model.js.map +1 -1
package/dist/semantic_graph/derive.d.ts +1 -0
package/dist/semantic_graph/derive.d.ts.map +1 -1
package/dist/semantic_graph/derive.js +24 -6
package/dist/semantic_graph/derive.js.map +1 -1
package/dist/semantic_graph/store.d.ts +14 -6
package/dist/semantic_graph/store.d.ts.map +1 -1
package/dist/semantic_graph/store.js +23 -7
package/dist/semantic_graph/store.js.map +1 -1
package/dist/version.d.ts +1 -1
package/dist/version.js +1 -1
package/package.json +1 -1

package/dist/semantic_graph/data_model.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"data_model.d.ts","sourceRoot":"","sources":["../../src/semantic_graph/data_model.ts"],"names":[],"mappings":"AA4BA,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAuBvD,MAAM,WAAW,SAAS;IACxB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE;QAAE,YAAY,EAAE,MAAM,CAAC;QAAC,cAAc,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,OAAO,CAAA;KAAE,CAAC;CAC1E;AAED,UAAU,MAAM;IACd,IAAI,EAAE,MAAM,CAAC;IACb,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,IAAI,EAAE,MAAM,EAAE,CAAC;CAChB;AAuED,qEAAqE;AACrE,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAwCnE;AAED,mEAAmE;AACnE,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAmCxE;AAED,iDAAiD;AACjD,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAsBtE;AAED,kEAAkE;AAClE,wBAAgB,sBAAsB,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAgBzE;AAmBD,8EAA8E;AAC9E,wBAAsB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,CAAC,CAkE9E"}

package/dist/semantic_graph/data_model.js CHANGED Viewed

@@ -55,13 +55,46 @@ const SQL_NOISE = new Set([
     'foreign', 'references', 'create', 'index', 'unique', 'constraint', 'order',
     'group', 'limit', 'exists', 'temporary',
 ]);
+/* System databases whose CREATE TABLE dumps are the DBMS's own catalog,
+ * not the app's data model. A mysqldump of `mysql` / a pg dump of
+ * pg_catalog drags these in and pollutes the graph (Pablo 2026-07-10:
+ * rpaosdeapligem showed 13 junk datamodel nodes -- slave_*, *_priv,
+ * general_log...). We drop a table when its schema is one of these
+ * (tracked via USE / schema-qualifier) OR its name is a distinctive
+ * system-catalog name (backstop for dumps that use neither). */
+const SYSTEM_SCHEMAS = new Set([
+    'mysql', 'information_schema', 'performance_schema', 'sys', 'pg_catalog',
+]);
+/* Distinctive MySQL/MariaDB system-catalog tables -- names that are
+ * unmistakably the server's own (never a plausible domain entity), so
+ * safe to deny by name even without a schema qualifier. Ambiguous
+ * short names (event, user, db, servers, func) are intentionally NOT
+ * here -- those are only dropped when their schema is a system one, to
+ * avoid nuking a real domain table that happens to share the name. */
+const SYSTEM_CATALOG_TABLES = new Set([
+    'general_log', 'slow_log', 'columns_priv', 'tables_priv', 'procs_priv',
+    'proxies_priv', 'roles_mapping', 'role_edges', 'global_grants',
+    'default_roles', 'password_history', 'slave_master_info',
+    'slave_relay_log_info', 'slave_worker_info', 'gtid_executed',
+    'gtid_slave_pos', 'replication_group_members', 'innodb_table_stats',
+    'innodb_index_stats', 'table_stats', 'index_stats', 'column_stats',
+    'help_topic', 'help_category', 'help_keyword', 'help_relation',
+    'time_zone', 'time_zone_name', 'time_zone_transition',
+    'time_zone_transition_type', 'time_zone_leap_second', 'ndb_binlog_index',
+    'transaction_registry',
+]);
+function isSystemCatalogName(name) {
+    return SYSTEM_CATALOG_TABLES.has(String(name || '').trim().toLowerCase());
+}
 function isPlausibleEntityName(name) {
     const n = String(name || '').trim();
     if (n.length < 2)
         return false;
     if (!/^[A-Za-z_][A-Za-z0-9_]*$/.test(n))
         return false;
-    return !SQL_NOISE.has(n.toLowerCase());
+    if (SQL_NOISE.has(n.toLowerCase()))
+        return false;
+    return !isSystemCatalogName(n);
 }
 async function walkSchemaFiles(root) {
     const out = [];
@@ -93,11 +126,37 @@ async function walkSchemaFiles(root) {
 /** Extract CREATE TABLE statements (name + columns + references). */
 export function extractSqlTables(src, rel) {
     const out = [];
-    const re = /create\s+table\s+(?:if\s+not\s+exists\s+)?[`"\[]?(?:[\w]+\.)?([\w]+)[`"\]]?\s*\(([\s\S]*?)\)\s*;/gi;
+    /* Track `USE <db>;` so a table declared after `USE mysql;` is known to
+     * belong to a system schema even though its CREATE TABLE is unqualified
+     * (that is exactly how mysqldump emits the `mysql` catalog). */
+    const useMarkers = [];
+    for (const um of src.matchAll(/\buse\s+[`"'\[]?([\w]+)[`"'\]]?\s*;/gi)) {
+        useMarkers.push({ idx: um.index ?? 0, db: (um[1] || '').toLowerCase() });
+    }
+    const schemaAt = (pos, explicit) => {
+        if (explicit)
+            return explicit.toLowerCase();
+        let cur = '';
+        for (const mk of useMarkers) {
+            if (mk.idx < pos)
+                cur = mk.db;
+            else
+                break;
+        }
+        return cur;
+    };
+    /* Capture the optional schema qualifier (group 1) so mysql.general_log is
+     * rejected by schema too, not only by name. */
+    const re = /create\s+table\s+(?:if\s+not\s+exists\s+)?(?:[`"\[]?([\w]+)[`"\]]?\.)?[`"\[]?([\w]+)[`"\]]?\s*\(([\s\S]*?)\)\s*;/gi;
     let m;
     while ((m = re.exec(src)) !== null) {
-        const name = m[1];
-        const body = m[2] || '';
+        const name = m[2];
+        const body = m[3] || '';
+        /* Skip anything under a DBMS system schema (its catalog, not the app). */
+        if (SYSTEM_SCHEMAS.has(schemaAt(m.index ?? 0, m[1])))
+            continue;
+        if (isSystemCatalogName(name))
+            continue;
         const fields = [];
         const refs = new Set();
         for (const rawLine of body.split(',')) {

package/dist/semantic_graph/data_model.js.map CHANGED Viewed

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package/dist/semantic_graph/derive.d.ts CHANGED Viewed

@@ -47,5 +47,6 @@ export declare function regenerateAndPersist(opts: {
     fetchImpl?: typeof fetch;
 }): Promise<DerivedGraph['stats'] & {
     pruned: number;
+    prune_skipped?: boolean;
 }>;
 //# sourceMappingURL=derive.d.ts.map

package/dist/semantic_graph/derive.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"derive.d.ts","sourceRoot":"","sources":["../../src/semantic_graph/derive.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AA+JvD;;wDAEwD;AACxD,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,CAchE;AA+CD,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE;QAAE,YAAY,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,aAAa,EAAE,MAAM,CAAC;QAAC,eAAe,EAAE,MAAM,CAAC;QAAC,YAAY,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,cAAc,EAAE,MAAM,CAAC;QAAC,gBAAgB,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,OAAO,CAAA;KAAE,CAAC;CAChN;AAuDD;;;;;;;;;sCASsC;AACtC,wBAAsB,eAAe,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CA2F/E;AAoBD;sDACsD;AACtD,wBAAsB,kBAAkB,CAAC,IAAI,EAAE;IAC7C,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,OAAO,KAAK,CAAC;CAC1B,GAAG,OAAO,CAAC,YAAY,CAAC,CAyPxB;AAED;;qDAEqD;AACrD,wBAAsB,oBAAoB,CAAC,IAAI,EAAE;IAC/C,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,OAAO,KAAK,CAAC;CAC1B,GAAG,OAAO,CAAC,YAAY,CAAC,OAAO,CAAC,GAAG;IAAE,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,~~CAYtD~~"}
1	+ {"version":3,"file":"derive.d.ts","sourceRoot":"","sources":["../../src/semantic_graph/derive.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AA+JvD;;wDAEwD;AACxD,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,CAchE;AA+CD,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,KAAK,EAAE;QAAE,YAAY,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,aAAa,EAAE,MAAM,CAAC;QAAC,eAAe,EAAE,MAAM,CAAC;QAAC,YAAY,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,cAAc,EAAE,MAAM,CAAC;QAAC,gBAAgB,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,OAAO,CAAA;KAAE,CAAC;CAChN;AAuDD;;;;;;;;;sCASsC;AACtC,wBAAsB,eAAe,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CA2F/E;AAoBD;sDACsD;AACtD,wBAAsB,kBAAkB,CAAC,IAAI,EAAE;IAC7C,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,OAAO,KAAK,CAAC;CAC1B,GAAG,OAAO,CAAC,YAAY,CAAC,CAyPxB;AAED;;qDAEqD;AACrD,wBAAsB,oBAAoB,CAAC,IAAI,EAAE;IAC/C,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,OAAO,KAAK,CAAC;CAC1B,GAAG,OAAO,CAAC,YAAY,CAAC,OAAO,CAAC,GAAG;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,aAAa,CAAC,EAAE,OAAO,CAAA;CAAE,CAAC,CA6B/E"}

package/dist/semantic_graph/derive.js CHANGED Viewed

@@ -19,7 +19,7 @@
 import { promises as fs } from 'node:fs';
 import path from 'node:path';
 import { ingestFromPackageJson } from '../chat/semantic_graph_ingest.js';
-import { upsertNodes, upsertEdges, pruneDanglingEdges, pruneStaleDerivedNodes } from './store.js';
+import { upsertNodes, upsertEdges, pruneDanglingEdges, pruneStaleDerivedNodes, countDerivedNodes } from './store.js';
 import { extractImportSpecifiersAst } from './ast_extract.js';
 import { extractPythonImports } from './py_imports.js';
 import { extractLangImports } from './lang_imports.js';
@@ -783,13 +783,31 @@ export async function regenerateAndPersist(opts) {
         await upsertNodes(opts.project_slug, g.nodes);
     if (g.edges.length > 0)
         await upsertEdges(opts.project_slug, g.edges);
-    /* self-heal: drop auto-derived module./lib. nodes the fresh scan no
-     * longer produced (e.g. a stale module.__pycache__). Only when the
-     * scan actually found nodes, so a transient empty scan never wipes. */
-    if (g.nodes.length > 0) {
+    /* self-heal: drop auto-derived module./lib./tool./datamodel. nodes the
+     * fresh scan no longer produced (e.g. a stale module.__pycache__). Guarded
+     * against a PARTIAL scan (Pablo 2026-07-10): the `g.nodes.length > 0` check
+     * only catches a fully-empty scan, but a Windows subtree lock / fs error
+     * yields a SMALL partial scan that would wipe the rest. So we also refuse to
+     * prune when the fresh derived-node count collapsed vs. what is stored --
+     * upsert is additive (safe); only the prune is destructive, so skipping it
+     * loses nothing and self-heals on the next healthy derive. */
+    const freshDerived = g.nodes.filter((n) => n.id.startsWith('module.') || n.id.startsWith('lib.')
+        || n.id.startsWith('tool.') || n.id.startsWith('datamodel.')).length;
+    const storedDerived = await countDerivedNodes(opts.project_slug).catch(() => 0);
+    const collapsed = storedDerived >= 20 && freshDerived < storedDerived * 0.5;
+    let pruneSkipped = false;
+    if (g.nodes.length > 0 && !collapsed) {
         await pruneStaleDerivedNodes(opts.project_slug, g.nodes.map((n) => n.id));
     }
+    else if (collapsed) {
+        pruneSkipped = true;
+        try {
+            console.error('[graph-regen] partial scan suspected (fresh=' + freshDerived
+                + ' vs stored=' + storedDerived + '); skipping prune to protect the graph');
+        }
+        catch { /* */ }
+    }
     const pruned = await pruneDanglingEdges(opts.project_slug);
-    return { ...g.stats, pruned: pruned.removed };
+    return { ...g.stats, pruned: pruned.removed, prune_skipped: pruneSkipped };
 }
 //# sourceMappingURL=derive.js.map

package/dist/semantic_graph/derive.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/semantic_graph/store.d.ts CHANGED Viewed

@@ -35,15 +35,23 @@ export declare function summarize(project_slug: string): Promise<GraphSummary>;
 export declare function pruneDanglingEdges(project_slug: string): Promise<{
     removed: number;
 }>;
-/** Prune stale auto-DERIVED nodes (module.* / lib.*) that the latest
- *  scan no longer produced -- e.g. an old `module.__pycache__` left over
- *  before the scanner learned to exclude it. Scoped tightly: only
- *  confidence='auto' nodes with a module./lib. id prefix, never the
- *  comp.* watcher nodes nor the chat-declared 'claimed' domain nodes.
- *  `keepIds` is the id set the fresh derive just upserted. */
+/** Prune stale auto-DERIVED nodes (module.* / lib.* / tool.* / datamodel.*)
+ *  that the latest scan no longer produced -- e.g. an old
+ *  `module.__pycache__` left over before the scanner learned to exclude it,
+ *  or `datamodel.general_log` from before the system-catalog denylist
+ *  (Pablo 2026-07-10). Scoped tightly: only confidence='auto' nodes with a
+ *  derived id prefix, never the comp.* watcher nodes nor the chat-declared
+ *  'claimed' domain nodes. `keepIds` is the id set the fresh derive just
+ *  upserted, so anything absent from a NON-empty scan is genuinely stale. */
 export declare function pruneStaleDerivedNodes(project_slug: string, keepIds: Iterable<string>): Promise<{
     removed: number;
 }>;
+/** Count the auto-DERIVED nodes currently stored (module./lib./tool./
+ *  datamodel.). Used as a sanity baseline: if a fresh scan produced far
+ *  fewer than this, it likely PARTIALLY failed (a locked subtree on
+ *  Windows, an fs error) and the self-heal prune must NOT run -- else a
+ *  transient read failure wipes a rich graph (Pablo 2026-07-10). */
+export declare function countDerivedNodes(project_slug: string): Promise<number>;
 /** Wipe both tables for a project (yf graph forget). */
 export declare function forgetGraph(project_slug: string): Promise<void>;
 /** Test seam preserved for compatibility -- the store no longer

package/dist/semantic_graph/store.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"store.d.ts","sourceRoot":"","sources":["../../src/semantic_graph/store.ts"],"names":[],"mappings":"AA2BA,OAAO,EACL,KAAK,SAAS,EAAE,KAAK,SAAS,EAAE,KAAK,YAAY,EACjD,KAAK,aAAa,EACnB,MAAM,YAAY,CAAC;AAiHpB,MAAM,WAAW,iBAAiB;IAAG,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;CAAE;AACzE,MAAM,WAAW,iBAAiB;IAAG,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;CAAE;AAEzE,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAmDtG;AAED,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAgCtG;AAED,MAAM,WAAW,aAAa;IAC5B,mEAAmE;IACnE,IAAI,CAAC,EAAK,MAAM,CAAC;IACjB,KAAK,CAAC,EAAI,aAAa,EAAE,CAAC;IAC1B,KAAK,CAAC,EAAI,MAAM,CAAC;IACjB;4CACwC;IACxC,cAAc,CAAC,EAAE,SAAS,GAAG,MAAM,GAAG,UAAU,CAAC;CAClD;AAID,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,EAAE,CAAC,EAAE,aAAa,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CA2B/F;AAED,wBAAsB,OAAO,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,GAAG,IAAI,CAAC,CAOzF;AAED,wBAAsB,aAAa,CAAC,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAO/F;AAED;;;oEAGoE;AACpE,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAO7E;AAED,wBAAsB,SAAS,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,CAsB3E;AAED;;;;oEAIoE;AACpE,wBAAsB,kBAAkB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAY3F;AAED;;;;;;;6EAO6E;AAC7E,wBAAsB,sBAAsB,CAC1C,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,CAAC,MAAM,CAAC,GAC9C,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAiB9B;AAED;;;;oEAIoE;AACpE,wBAAsB,iBAAiB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAS7E;AAED,wDAAwD;AACxD,wBAAsB,WAAW,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAUrE;AAyCD;;mCAEmC;AACnC,wBAAgB,gBAAgB,IAAI,IAAI,CAAgB"}

package/dist/semantic_graph/store.js CHANGED Viewed

@@ -307,17 +307,20 @@ export async function pruneDanglingEdges(project_slug) {
         return { removed: r.changes };
     });
 }
-/** Prune stale auto-DERIVED nodes (module.* / lib.*) that the latest
- *  scan no longer produced -- e.g. an old `module.__pycache__` left over
- *  before the scanner learned to exclude it. Scoped tightly: only
- *  confidence='auto' nodes with a module./lib. id prefix, never the
- *  comp.* watcher nodes nor the chat-declared 'claimed' domain nodes.
- *  `keepIds` is the id set the fresh derive just upserted. */
+/** Prune stale auto-DERIVED nodes (module.* / lib.* / tool.* / datamodel.*)
+ *  that the latest scan no longer produced -- e.g. an old
+ *  `module.__pycache__` left over before the scanner learned to exclude it,
+ *  or `datamodel.general_log` from before the system-catalog denylist
+ *  (Pablo 2026-07-10). Scoped tightly: only confidence='auto' nodes with a
+ *  derived id prefix, never the comp.* watcher nodes nor the chat-declared
+ *  'claimed' domain nodes. `keepIds` is the id set the fresh derive just
+ *  upserted, so anything absent from a NON-empty scan is genuinely stale. */
 export async function pruneStaleDerivedNodes(project_slug, keepIds) {
     const keep = new Set(keepIds);
     return withDb(project_slug, (db) => {
         const rows = db.prepare("SELECT id FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ?"
-            + " AND confidence = 'auto' AND (id LIKE 'module.%' OR id LIKE 'lib.%' OR id LIKE 'tool.%')").all(LOCAL_USER_HANDLE, project_slug);
+            + " AND confidence = 'auto' AND (id LIKE 'module.%' OR id LIKE 'lib.%'"
+            + " OR id LIKE 'tool.%' OR id LIKE 'datamodel.%')").all(LOCAL_USER_HANDLE, project_slug);
         const del = db.prepare('DELETE FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ? AND id = ?');
         let removed = 0;
         for (const r of rows) {
@@ -329,6 +332,19 @@ export async function pruneStaleDerivedNodes(project_slug, keepIds) {
         return { removed };
     });
 }
+/** Count the auto-DERIVED nodes currently stored (module./lib./tool./
+ *  datamodel.). Used as a sanity baseline: if a fresh scan produced far
+ *  fewer than this, it likely PARTIALLY failed (a locked subtree on
+ *  Windows, an fs error) and the self-heal prune must NOT run -- else a
+ *  transient read failure wipes a rich graph (Pablo 2026-07-10). */
+export async function countDerivedNodes(project_slug) {
+    return withDb(project_slug, (db) => {
+        const r = db.prepare("SELECT count(*) c FROM semantic_graph_nodes WHERE user_handle = ? AND project_slug = ?"
+            + " AND confidence = 'auto' AND (id LIKE 'module.%' OR id LIKE 'lib.%'"
+            + " OR id LIKE 'tool.%' OR id LIKE 'datamodel.%')").get(LOCAL_USER_HANDLE, project_slug);
+        return r.c;
+    });
+}
 /** Wipe both tables for a project (yf graph forget). */
 export async function forgetGraph(project_slug) {
     try {

package/dist/semantic_graph/store.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/version.d.ts CHANGED Viewed

@@ -2,5 +2,5 @@
  * Yujin Forge CLI version. Kept in sync with package.json by the npm
  * "version" lifecycle (scripts/sync_version.mjs) so the two never drift.
  */
-export declare const VERSION = "1.0.76";
+export declare const VERSION = "1.0.77";
 //# sourceMappingURL=version.d.ts.map

package/dist/version.js CHANGED Viewed

@@ -2,5 +2,5 @@
  * Yujin Forge CLI version. Kept in sync with package.json by the npm
  * "version" lifecycle (scripts/sync_version.mjs) so the two never drift.
  */
-export const VERSION = '1.0.76';
+export const VERSION = '1.0.77';
 //# sourceMappingURL=version.js.map

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@nac3/forge-cli",
-  "version": "1.0.76",
+  "version": "1.0.77",
   "description": "Yujin Forge -- voice-first NAC-3 React development framework. CLI + chat panel + spec ingest + 10-format document reader + voice loop.",
   "license": "SEE LICENSE IN LICENSE",
   "author": "Pablo Kuschnirof <pablo@rpaforce.com>",