@mycelish/cli 0.2.7 → 0.3.0

package/dist/core/marketplace.test.js

@@ -6,14 +6,19 @@ import * as fs from "node:fs/promises";
 vi.mock("node:fs/promises");
 vi.mock("./marketplace-registry.js", () => ({
     loadMarketplaceRegistry: vi.fn().mockResolvedValue({
-        skillsmp: { type: "remote", enabled: true },
-        openskills: { type: "remote", enabled: true },
         "claude-plugins": { type: "local", enabled: true },
         "mcp-registry": { type: "remote", enabled: true },
         "anthropic-skills": { type: "remote", enabled: true },
-        clawhub: { type: "remote", enabled: true },
     }),
 }));
+vi.mock("./manifest-state.js", () => {
+    let stored = null;
+    return {
+        loadStateManifest: vi.fn(async () => stored),
+        saveStateManifest: vi.fn(async (_dir, manifest) => { stored = manifest; }),
+        __resetStore: () => { stored = null; },
+    };
+});
 vi.mock("./mcp-registry.js", () => ({
     searchRegistry: vi.fn().mockResolvedValue([
         { name: "test-mcp", command: "test-mcp", description: "A test MCP" },
@@ -39,10 +44,9 @@ beforeEach(() => {
 });
 describe("searchMarketplace", () => {
     it("searches enabled sources and returns results", async () => {
-        // npm search for openskills
         mockFetch.mockResolvedValue({
             ok: true,
-            json: async () => ({ objects: [{ package: { name: "openskills", description: "desc", version: "1.0.0" } }] }),
+            json: async () => ({ servers: [{ server: { name: "test-mcp", description: "desc", version: "1.0.0" } }] }),
         });
         mockFs.readFile.mockRejectedValue(new Error("ENOENT"));
         const results = await searchMarketplace("test");
@@ -54,34 +58,12 @@ describe("searchMarketplace", () => {
         const results = await searchMarketplace("test");
         expect(Array.isArray(results)).toBe(true);
     });
-    it("filters empty results", async () => {
-        // SkillsMP returns empty (no API key)
-        const results = await searchMarketplace("test", "skillsmp");
+    it("filters empty results for unknown source", async () => {
+        const results = await searchMarketplace("test", "nonexistent-source");
         expect(results).toEqual([]);
     });
 });
 describe("installFromMarketplace", () => {
-    it("returns error for skillsmp (no API key)", async () => {
-        const result = await installFromMarketplace({
-            name: "test-skill",
-            description: "desc",
-            source: "skillsmp",
-            type: "skill",
-        });
-        expect(result.success).toBe(false);
-        expect(result.error).toContain("API key");
-    });
-    it("installs from openskills", async () => {
-        mockFs.mkdir.mockResolvedValue(undefined);
-        mockFs.writeFile.mockResolvedValue(undefined);
-        const result = await installFromMarketplace({
-            name: "openskill-test",
-            description: "Open skill",
-            source: "openskills",
-            type: "skill",
-        });
-        expect(result.success).toBe(true);
-    });
     it("symlinks claude plugins", async () => {
         mockFs.mkdir.mockResolvedValue(undefined);
         mockFs.symlink.mockResolvedValue(undefined);
@@ -119,20 +101,91 @@ describe("installFromMarketplace", () => {
         expect(result.success).toBe(true);
         expect(result.path).toContain("canvas-design");
     });
-    it("installs from clawhub", async () => {
-        mockFetch.mockResolvedValue({
+});
+describe("manifest registration on install", () => {
+    it("registers skill in manifest after successful install", async () => {
+        mockFetch.mockResolvedValueOnce({
+            ok: true,
+            text: async () => "# Skill\nBody",
+        });
+        mockFs.mkdir.mockResolvedValue(undefined);
+        mockFs.writeFile.mockResolvedValue(undefined);
+        const { saveStateManifest } = await import("./manifest-state.js");
+        await installFromMarketplace({
+            name: "canvas-test",
+            description: "Anthropic skill",
+            source: "anthropic-skills",
+            type: "skill",
+        });
+        expect(saveStateManifest).toHaveBeenCalledWith(expect.any(String), expect.objectContaining({
+            skills: expect.objectContaining({
+                "canvas-test": expect.objectContaining({ state: "enabled", source: "anthropic-skills" }),
+            }),
+        }));
+    });
+    it("registers MCP registry entries with version in manifest", async () => {
+        mockFs.appendFile.mockResolvedValue(undefined);
+        const { saveStateManifest } = await import("./manifest-state.js");
+        vi.mocked(saveStateManifest).mockClear();
+        await installFromMarketplace({
+            name: "test-mcp",
+            description: "A test MCP",
+            source: "mcp-registry",
+            type: "mcp",
+        });
+        expect(saveStateManifest).toHaveBeenCalled();
+    });
+});
+describe("dynamic GitHub marketplace", () => {
+    it("searches GitHub repo sources not in KNOWN_SEARCHERS", async () => {
+        const { loadMarketplaceRegistry } = await import("./marketplace-registry.js");
+        vi.mocked(loadMarketplaceRegistry).mockResolvedValueOnce({
+            "my-github-mp": {
+                type: "remote",
+                enabled: true,
+                url: "https://github.com/bytemines/sherpai",
+            },
+        });
+        // GitHub tree API response
+        mockFetch.mockResolvedValueOnce({
+            ok: true,
+            json: async () => ({
+                tree: [
+                    { path: "skills/cool-skill/SKILL.md", type: "blob" },
+                    { path: "agents/helper.md", type: "blob" },
+                ],
+            }),
+        });
+        const results = await searchMarketplace("cool");
+        // Results are now flat MarketplaceEntry[] after deduplication
+        const skillEntry = results.find(e => e.name === "cool-skill");
+        expect(skillEntry).toBeDefined();
+        expect(skillEntry.source).toBe("my-github-mp");
+        expect(skillEntry.type).toBe("skill");
+    });
+    it("installs from dynamic GitHub marketplace", async () => {
+        const { loadMarketplaceRegistry } = await import("./marketplace-registry.js");
+        vi.mocked(loadMarketplaceRegistry).mockResolvedValueOnce({
+            "my-github-mp": {
+                type: "remote",
+                enabled: true,
+                url: "https://github.com/bytemines/sherpai",
+            },
+        });
+        mockFetch.mockResolvedValueOnce({
             ok: true,
-            text: async () => "# Skill content",
+            text: async () => "# My Skill\n\nContent here",
         });
         mockFs.mkdir.mockResolvedValue(undefined);
         mockFs.writeFile.mockResolvedValue(undefined);
         const result = await installFromMarketplace({
-            name: "git-workflows",
-            description: "Git workflows",
-            source: "clawhub",
+            name: "my-skill",
+            description: "A skill",
+            source: "my-github-mp",
             type: "skill",
         });
         expect(result.success).toBe(true);
+        expect(result.path).toContain("my-skill");
     });
 });
 describe("listInstalledPlugins", () => {
@@ -158,15 +211,13 @@ describe("listInstalledPlugins", () => {
         expect(result[0].source).toBe("claude-plugins");
         expect(result[1].name).toBe("superpowers");
     });
-    it("reads v1 format (plain array) as fallback", async () => {
+    it("returns empty for non-v2 format", async () => {
         const v1Data = [
             { name: "plugin1", description: "Plugin 1", version: "1.0.0" },
         ];
         mockFs.readFile.mockResolvedValue(JSON.stringify(v1Data));
         const result = await listInstalledPlugins();
-        expect(result).toHaveLength(1);
-        expect(result[0].name).toBe("plugin1");
-        expect(result[0].type).toBe("plugin");
+        expect(result).toHaveLength(0);
     });
     it("returns empty array when file does not exist", async () => {
         mockFs.readFile.mockRejectedValue(new Error("ENOENT"));

package/dist/core/marketplace.test.js.map

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package/dist/core/migrator/executor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"executor.d.ts","sourceRoot":"","sources":["../../../src/core/migrator/executor.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EACV,MAAM,EACN,aAAa,EACb,eAAe,EAGhB,MAAM,gBAAgB,CAAC;AAQxB,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,eAAe,CAAC,CAkIpF;AAED,wBAAsB,cAAc,CAClC,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,GAC5B,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,EAAE,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CA+DlD"}
+{"version":3,"file":"executor.d.ts","sourceRoot":"","sources":["../../../src/core/migrator/executor.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EACV,MAAM,EACN,aAAa,EACb,eAAe,EAGhB,MAAM,gBAAgB,CAAC;AAQxB,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,eAAe,CAAC,CA6IpF;AAED,wBAAsB,cAAc,CAClC,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,GAC5B,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,EAAE,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CA8DlD"}

package/dist/core/migrator/executor.js

@@ -50,8 +50,18 @@ export async function executeMigration(plan) {
         const mcpsPath = path.join(MYCELIUM_DIR, "global", "mcps.yaml");
         try {
             await mkdirp(path.join(MYCELIUM_DIR, "global"));
-            await fs.writeFile(mcpsPath, serializeMcpsYaml(plan.mcps), "utf-8");
+            const extractedSecrets = {};
+            await fs.writeFile(mcpsPath, serializeMcpsYaml(plan.mcps, { secretsOut: extractedSecrets }), "utf-8");
             mcpsImported = plan.mcps.length;
+            // Write extracted secrets to .env.local
+            const secretKeys = Object.keys(extractedSecrets);
+            if (secretKeys.length > 0) {
+                const { setupEnvVars, ensureGitignore } = await import("../env-template.js");
+                await setupEnvVars(extractedSecrets);
+                await ensureGitignore();
+                console.warn(`\u26A0 Extracted ${secretKeys.length} secret(s) to ~/.mycelium/.env.local (never commit this file)`);
+                console.warn(`  Keys: ${secretKeys.join(", ")}`);
+            }
             for (const mcp of plan.mcps) {
                 entries.push({
                     name: mcp.name,
@@ -171,7 +181,6 @@ export async function clearMigration(options) {
             path.join(MYCELIUM_DIR, "global", "commands"),
             path.join(MYCELIUM_DIR, "global", "hooks"),
             path.join(MYCELIUM_DIR, "global", "libs"),
-            path.join(MYCELIUM_DIR, "global", "memory"),
         ];
         for (const dir of dirs) {
             try {

package/dist/core/migrator/executor.js.map

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package/dist/core/migrator/manifest.d.ts

@@ -1,7 +1,16 @@
 import type { ScannedMcp, ScannedHook, MigrationManifest } from "@mycelish/core";
 /** Quote a YAML scalar value if it contains special characters */
 export declare function yamlQuote(val: string): string;
-export declare function serializeMcpsYaml(mcps: ScannedMcp[]): string;
+export interface MigrationSecretExtraction {
+    /** Number of secrets extracted */
+    count: number;
+    /** Key names that were extracted */
+    keys: string[];
+}
+export declare function serializeMcpsYaml(mcps: ScannedMcp[], options?: {
+    extractSecrets?: boolean;
+    secretsOut?: Record<string, string>;
+}): string;
 export declare function writeHooksYaml(hooks: ScannedHook[]): Promise<void>;
 export declare function loadManifest(): Promise<MigrationManifest>;
 export declare function saveManifest(manifest: MigrationManifest): Promise<void>;

package/dist/core/migrator/manifest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/migrator/manifest.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EACV,UAAU,EACV,WAAW,EACX,iBAAiB,EAClB,MAAM,gBAAgB,CAAC;AAWxB,kEAAkE;AAClE,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAK7C;AAED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,UAAU,EAAE,GAAG,MAAM,CAoB5D;AAED,wBAAsB,cAAc,CAAC,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAkBxE;AAMD,wBAAsB,YAAY,IAAI,OAAO,CAAC,iBAAiB,CAAC,CAU/D;AAED,wBAAsB,YAAY,CAAC,QAAQ,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAG7E"}
+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/migrator/manifest.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EACV,UAAU,EACV,WAAW,EACX,iBAAiB,EAClB,MAAM,gBAAgB,CAAC;AAYxB,kEAAkE;AAClE,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAK7C;AAED,MAAM,WAAW,yBAAyB;IACxC,kCAAkC;IAClC,KAAK,EAAE,MAAM,CAAC;IACd,oCAAoC;IACpC,IAAI,EAAE,MAAM,EAAE,CAAC;CAChB;AAED,wBAAgB,iBAAiB,CAC/B,IAAI,EAAE,UAAU,EAAE,EAClB,OAAO,CAAC,EAAE;IAAE,cAAc,CAAC,EAAE,OAAO,CAAC;IAAC,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;CAAE,GAC1E,MAAM,CA6BR;AAED,wBAAsB,cAAc,CAAC,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAkBxE;AAMD,wBAAsB,YAAY,IAAI,OAAO,CAAC,iBAAiB,CAAC,CAU/D;AAED,wBAAsB,YAAY,CAAC,QAAQ,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAG7E"}

package/dist/core/migrator/manifest.js

@@ -4,6 +4,7 @@
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
 import { readFileIfExists, mkdirp, MYCELIUM_HOME } from "../fs-helpers.js";
+import { isLikelySecret } from "../secret-detector.js";
 const MYCELIUM_DIR = MYCELIUM_HOME;
 const MANIFEST_PATH = path.join(MYCELIUM_DIR, "migration-manifest.json");
 // ============================================================================
@@ -16,7 +17,9 @@ export function yamlQuote(val) {
     }
     return val;
 }
-export function serializeMcpsYaml(mcps) {
+export function serializeMcpsYaml(mcps, options) {
+    const shouldExtract = options?.extractSecrets !== false;
+    const secretsOut = options?.secretsOut ?? {};
     let yaml = "# Mycelium MCP Configuration\n# Auto-generated by migration\n\n";
     for (const mcp of mcps) {
         yaml += `${mcp.name}:\n`;
@@ -30,7 +33,14 @@ export function serializeMcpsYaml(mcps) {
         if (mcp.config.env) {
             yaml += `  env:\n`;
             for (const [key, val] of Object.entries(mcp.config.env)) {
-                yaml += `    ${key}: ${yamlQuote(String(val))}\n`;
+                const strVal = String(val);
+                if (shouldExtract && isLikelySecret(key, strVal)) {
+                    secretsOut[key] = strVal;
+                    yaml += `    ${key}: ${yamlQuote(`\${${key}}`)}\n`;
+                }
+                else {
+                    yaml += `    ${key}: ${yamlQuote(strVal)}\n`;
+                }
             }
         }
         yaml += "\n";

package/dist/core/migrator/manifest.js.map

@@ -1 +1 @@
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package/dist/core/plugin-scanner.test.js

@@ -214,7 +214,6 @@ describe("migrator integration", () => {
             installed: true,
             skills: [],
             mcps: [],
-            memory: [],
             hooks: [],
             components: [
                 { name: "code-reviewer", type: "agent", path: "/p/agent.md", pluginName: "superpowers" },
@@ -236,7 +235,6 @@ describe("migrator integration", () => {
             installed: true,
             skills: [],
             mcps: [],
-            memory: [],
             hooks: [],
             components: [
                 { name: "reviewer", type: "agent", path: "/a/reviewer.md" },
@@ -248,7 +246,6 @@ describe("migrator integration", () => {
             installed: true,
             skills: [],
             mcps: [],
-            memory: [],
             hooks: [],
             components: [
                 { name: "reviewer", type: "agent", path: "/b/reviewer.md" },
@@ -265,7 +262,6 @@ describe("migrator integration", () => {
             installed: true,
             skills: [],
             mcps: [],
-            memory: [],
             hooks: [],
             components: [
                 { name: "brainstorm", type: "agent", path: "/a.md" },

package/dist/core/plugin-scanner.test.js.map

@@ -1 +1 @@
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package/dist/core/plugin-state.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"plugin-state.d.ts","sourceRoot":"","sources":["../../src/core/plugin-state.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAAE,UAAU,EAAmB,MAAM,gBAAgB,CAAC;AAgBlE;;;GAGG;AACH,wBAAsB,kBAAkB,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CA4DpF"}
+{"version":3,"file":"plugin-state.d.ts","sourceRoot":"","sources":["../../src/core/plugin-state.ts"],"names":[],"mappings":"AAaA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAoDjD;;;GAGG;AACH,wBAAsB,kBAAkB,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAsEpF"}

package/dist/core/plugin-state.js

@@ -1,30 +1,62 @@
-/**
- * Plugin State — merges live cache scan with manifest state at query time.
- *
- * Two sources of truth:
- *   1. Discovery: scanPluginCache() → what components EXIST
- *   2. State: manifest.yaml → what's enabled/disabled
- *
- * This replaces the stale buildPluginMap(migration-manifest.json) approach.
- */
 import * as os from "node:os";
 import * as path from "node:path";
 import { scanPluginCache } from "./plugin-scanner.js";
-import { getDisabledItems } from "./manifest-state.js";
+import { getDisabledItems, loadStateManifest } from "./manifest-state.js";
+import { readFileIfExists, MYCELIUM_HOME } from "./fs-helpers.js";
+import { buildPluginId } from "./plugin-takeover.js";
 const PLUGIN_CACHE_DIR = path.join(os.homedir(), ".claude", "plugins", "cache");
+/**
+ * Get the set of plugin IDs that are currently installed OR actively taken over.
+ */
+async function getActivePluginIds() {
+    const active = new Set();
+    // 1. Installed in Claude Code
+    try {
+        const ipPath = path.join(os.homedir(), ".claude", "plugins", "installed_plugins.json");
+        const raw = await readFileIfExists(ipPath);
+        if (raw) {
+            const data = JSON.parse(raw);
+            if (data.version === 2 && data.plugins) {
+                for (const pluginId of Object.keys(data.plugins)) {
+                    active.add(pluginId);
+                }
+            }
+        }
+    }
+    catch { /* no file */ }
+    // 2. Actively taken over by Mycelium
+    try {
+        const manifest = await loadStateManifest(MYCELIUM_HOME);
+        if (manifest?.takenOverPlugins) {
+            for (const pluginId of Object.keys(manifest.takenOverPlugins)) {
+                active.add(pluginId);
+            }
+        }
+    }
+    catch { /* no manifest */ }
+    return active;
+}
 /**
  * Get live plugin state by scanning the cache and merging with manifest.
  * Returns PluginInfo[] ready for the dashboard API.
  */
 export async function getLivePluginState(projectRoot) {
-    // 1. Scan live cache for discovery
+    // 1. Get active plugin IDs (installed or taken over)
+    const activePluginIds = await getActivePluginIds();
+    // 2. Scan live cache for discovery
     const components = await scanPluginCache(PLUGIN_CACHE_DIR);
-    // 2. Group by plugin name
+    // 3. Group by plugin name, skip plugins not in active set
     const pluginMap = new Map();
     for (const comp of components) {
-        const key = comp.pluginName ?? "unknown";
-        const existing = pluginMap.get(key) ?? {
-            marketplace: comp.marketplace ?? "",
+        const name = comp.pluginName ?? "unknown";
+        const marketplace = comp.marketplace ?? "";
+        const pluginId = buildPluginId(name, marketplace);
+        // Only include plugins that are installed or taken over
+        if (!activePluginIds.has(pluginId))
+            continue;
+        const existing = pluginMap.get(name) ?? {
+            marketplace,
+            pluginId,
             skills: [],
             agents: [],
             commands: [],
@@ -49,11 +81,11 @@ export async function getLivePluginState(projectRoot) {
                 existing.libs.push(comp.name);
                 break;
         }
-        pluginMap.set(key, existing);
+        pluginMap.set(name, existing);
     }
-    // 3. Load state from manifest
+    // 4. Load disabled state from manifest
     const disabledItems = await getDisabledItems(projectRoot);
-    // 4. Merge: components + state → PluginInfo[]
+    // 5. Merge: components + state → PluginInfo[]
     return Array.from(pluginMap.entries()).map(([name, data]) => {
         const allItems = [...data.skills, ...data.agents, ...data.commands, ...data.hooks, ...data.libs];
         const disabledList = allItems.filter(i => disabledItems.has(i));

package/dist/core/plugin-state.js.map

@@ -1 +1 @@
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package/dist/core/plugin-takeover.d.ts

@@ -15,6 +15,13 @@ export interface TakenOverPlugin {
     allSkills: string[];
     enabledSkills: string[];
 }
+/** Parse pluginId "{plugin}@{marketplace}" */
+export declare function parsePluginId(pluginId: string): {
+    plugin: string;
+    marketplace: string;
+};
+/** Build a pluginId from name and marketplace. */
+export declare function buildPluginId(name: string, marketplace: string): string;
 /**
  * Set a plugin's enabled state in ~/.claude/settings.json.
  * Uses read-preserve-write to avoid clobbering other settings.
@@ -47,4 +54,12 @@ export declare function syncPluginSymlinks(manifestDir?: string): Promise<{
     created: string[];
     removed: string[];
 }>;
+/**
+ * Detect and clean up orphaned plugin takeovers — plugins in takenOverPlugins
+ * whose cache no longer exists (e.g. plugin was uninstalled from Claude Code).
+ *
+ * Cleans: manifest entries (skills/agents/commands with pluginOrigin),
+ * takenOverPlugins, enabledPlugins in settings.json, and source files in ~/.mycelium/global/.
+ */
+export declare function cleanOrphanedTakeovers(manifestDir?: string): Promise<string[]>;
 //# sourceMappingURL=plugin-takeover.d.ts.map