@mycelish/cli 0.1.0 → 0.2.1

package/dist/__tests__/mcp-server.test.d.ts

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+export {};
+//# sourceMappingURL=mcp-server.test.d.ts.map

package/dist/__tests__/mcp-server.test.d.ts.map

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+{"version":3,"file":"mcp-server.test.d.ts","sourceRoot":"","sources":["../../src/__tests__/mcp-server.test.ts"],"names":[],"mappings":""}

package/dist/__tests__/mcp-server.test.js

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+/**
+ * Integration test for the MCP server factory.
+ * Verifies that all tool/resource/prompt registrations succeed without errors.
+ */
+import { describe, it, expect, vi } from "vitest";
+// Mock business logic modules to avoid filesystem access
+vi.mock("../core/config-merger.js", () => ({
+    loadAndMergeAllConfigs: vi.fn().mockResolvedValue({
+        mcps: {},
+        skills: {},
+        memory: { scopes: {} },
+        sources: {},
+    }),
+    loadGlobalConfig: vi.fn().mockResolvedValue({ mcps: {} }),
+    loadProjectConfig: vi.fn().mockResolvedValue({ mcps: {} }),
+}));
+vi.mock("../core/sync-writer.js", () => ({
+    syncToTool: vi.fn().mockResolvedValue({
+        configPath: "/test",
+        backupPath: "/test.bak",
+        sectionsUpdated: ["mcps"],
+        success: true,
+    }),
+}));
+vi.mock("../core/global-tracer.js", () => ({
+    getTracer: vi.fn().mockReturnValue({
+        createTrace: vi.fn().mockReturnValue({
+            info: vi.fn(),
+            warn: vi.fn(),
+            error: vi.fn(),
+            debug: vi.fn(),
+        }),
+        query: vi.fn().mockReturnValue([]),
+    }),
+}));
+vi.mock("../core/marketplace-registry.js", () => ({
+    loadMarketplaceRegistry: vi.fn().mockResolvedValue({}),
+}));
+vi.mock("../commands/health-checks/index.js", () => ({
+    runAllChecks: vi.fn().mockResolvedValue({
+        success: true,
+        checks: [],
+        summary: { passed: 0, failed: 0, warnings: 0 },
+    }),
+    formatDoctorJson: vi.fn().mockReturnValue("{}"),
+}));
+describe("MCP Server Integration", () => {
+    it("creates server with all registrations without throwing", async () => {
+        const { createMyceliumMcpServer } = await import("../mcp/server.js");
+        const server = createMyceliumMcpServer();
+        expect(server).toBeDefined();
+    });
+    it("server has resource, prompt, and tool handlers registered", async () => {
+        const { createMyceliumMcpServer } = await import("../mcp/server.js");
+        const server = createMyceliumMcpServer();
+        // The underlying Server instance should exist
+        expect(server.server).toBeDefined();
+    });
+});
+//# sourceMappingURL=mcp-server.test.js.map

package/dist/__tests__/mcp-server.test.js.map

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package/dist/__tests__/unified-item-state.integration.test.d.ts

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+/**
+ * Integration tests for unified item state management
+ * Verifies that state: "enabled" | "disabled" | "deleted" works correctly
+ * across the entire sync pipeline, symlink manager, and manifest migration.
+ */
+export {};
+//# sourceMappingURL=unified-item-state.integration.test.d.ts.map

package/dist/__tests__/unified-item-state.integration.test.d.ts.map

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+{"version":3,"file":"unified-item-state.integration.test.d.ts","sourceRoot":"","sources":["../../src/__tests__/unified-item-state.integration.test.ts"],"names":[],"mappings":"AAAA;;;;GAIG"}

package/dist/__tests__/unified-item-state.integration.test.js

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+/**
+ * Integration tests for unified item state management
+ * Verifies that state: "enabled" | "disabled" | "deleted" works correctly
+ * across the entire sync pipeline, symlink manager, and manifest migration.
+ */
+import { describe, it, expect, beforeEach, vi } from "vitest";
+// ---------------------------------------------------------------------------
+// Mocks
+// ---------------------------------------------------------------------------
+vi.mock("../core/config-merger.js", () => ({
+    loadAndMergeAllConfigs: vi.fn(),
+    loadGlobalConfig: vi.fn().mockResolvedValue({}),
+    loadProjectConfig: vi.fn().mockResolvedValue({}),
+}));
+vi.mock("../core/conflict-detector.js", () => ({
+    detectConflicts: vi.fn().mockReturnValue([]),
+}));
+vi.mock("../core/symlink-manager.js", () => ({
+    syncSkillsToTool: vi.fn().mockResolvedValue({
+        success: true,
+        created: [],
+        updated: [],
+        removed: [],
+        unchanged: [],
+        errors: [],
+    }),
+}));
+vi.mock("../core/mcp-injector.js", () => ({
+    filterMcpsForTool: vi.fn(),
+    resolveEnvVarsInMcps: vi.fn(),
+}));
+const mockSyncAll = vi.fn().mockResolvedValue({ success: true });
+vi.mock("../core/tool-adapter.js", () => ({
+    getAdapter: vi.fn(() => ({
+        syncAll: mockSyncAll,
+        syncOne: vi.fn().mockResolvedValue({ success: true }),
+    })),
+}));
+vi.mock("../core/memory-scoper.js", () => ({
+    syncMemoryToTool: vi.fn().mockResolvedValue({ success: true, filesWritten: 0 }),
+    getMemoryFilesForTool: vi.fn().mockResolvedValue([]),
+}));
+// Imports after mocks
+import { syncTool } from "../commands/sync.js";
+import { syncSkillsToTool } from "../core/symlink-manager.js";
+import { filterMcpsForTool, resolveEnvVarsInMcps, } from "../core/mcp-injector.js";
+import { migrateManifestV1ToV2 } from "../core/manifest-migrator.js";
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+function baseMergedConfig(mcps = {}, skills = {}) {
+    return {
+        mcps,
+        skills,
+        agents: {},
+        rules: {},
+        commands: {},
+        memory: { scopes: { shared: { syncTo: [], path: "", files: [] }, coding: { syncTo: [], path: "", files: [] }, personal: { syncTo: [], path: "", files: [] } } },
+        sources: {},
+    };
+}
+// ---------------------------------------------------------------------------
+// Tests
+// ---------------------------------------------------------------------------
+describe("unified item state integration", () => {
+    const toolId = "claude-code";
+    beforeEach(() => {
+        vi.clearAllMocks();
+        // Default: filterMcpsForTool passes through only enabled MCPs (real behaviour)
+        filterMcpsForTool.mockImplementation((mcps, _toolId) => {
+            const result = {};
+            for (const [name, cfg] of Object.entries(mcps)) {
+                if (cfg.state && cfg.state !== "enabled")
+                    continue;
+                result[name] = cfg;
+            }
+            return result;
+        });
+        resolveEnvVarsInMcps.mockImplementation((mcps) => mcps);
+    });
+    // -----------------------------------------------------------------------
+    // MCP state filtering through sync pipeline
+    // -----------------------------------------------------------------------
+    it("sync skips MCPs with state:disabled", async () => {
+        const config = baseMergedConfig({
+            foo: { command: "node", args: ["foo.js"], state: "disabled" },
+        });
+        await syncTool(toolId, config);
+        // The adapter should receive an empty MCP set
+        expect(mockSyncAll).toHaveBeenCalledWith({});
+    });
+    it("sync skips MCPs with state:deleted", async () => {
+        const config = baseMergedConfig({
+            foo: { command: "node", args: ["foo.js"], state: "deleted" },
+        });
+        await syncTool(toolId, config);
+        expect(mockSyncAll).toHaveBeenCalledWith({});
+    });
+    it("sync includes MCPs with state:enabled", async () => {
+        const mcp = { command: "node", args: ["foo.js"], state: "enabled" };
+        const config = baseMergedConfig({ foo: mcp });
+        await syncTool(toolId, config);
+        const passedMcps = mockSyncAll.mock.calls[0][0];
+        expect(passedMcps).toHaveProperty("foo");
+        expect(passedMcps.foo.command).toBe("node");
+    });
+    it("sync includes MCPs with state:undefined (default enabled)", async () => {
+        const mcp = { command: "node", args: ["foo.js"] };
+        const config = baseMergedConfig({ foo: mcp });
+        await syncTool(toolId, config);
+        const passedMcps = mockSyncAll.mock.calls[0][0];
+        expect(passedMcps).toHaveProperty("foo");
+    });
+    // -----------------------------------------------------------------------
+    // Skills with state filtering through symlink manager
+    // -----------------------------------------------------------------------
+    it("sync skips skills with state:disabled in symlink manager", async () => {
+        const config = baseMergedConfig({}, {
+            "my-skill": {
+                name: "my-skill",
+                path: "/tmp/skills/my-skill",
+                manifest: { name: "my-skill", state: "disabled" },
+            },
+        });
+        await syncTool(toolId, config);
+        // syncSkillsToTool should be called — the symlink manager itself filters
+        expect(syncSkillsToTool).toHaveBeenCalled();
+        const passedSkills = syncSkillsToTool.mock.calls[0][0];
+        // The skill is passed; the symlink-manager is responsible for skipping disabled ones
+        expect(passedSkills).toHaveLength(1);
+        expect(passedSkills[0].manifest.state).toBe("disabled");
+    });
+    // -----------------------------------------------------------------------
+    // End-to-end: disable then sync excludes the item
+    // -----------------------------------------------------------------------
+    it("disable then sync excludes the item", async () => {
+        // Simulate: user disables "playwright" MCP — state becomes "disabled"
+        const config = baseMergedConfig({
+            playwright: { command: "npx", args: ["@anthropic/mcp-playwright"], state: "disabled" },
+            whark: { command: "uvx", args: ["whark-mcp"], state: "enabled" },
+        });
+        await syncTool(toolId, config);
+        const passedMcps = mockSyncAll.mock.calls[0][0];
+        expect(passedMcps).not.toHaveProperty("playwright");
+        expect(passedMcps).toHaveProperty("whark");
+    });
+    // -----------------------------------------------------------------------
+    // End-to-end: remove (state:deleted) then sync excludes the item
+    // -----------------------------------------------------------------------
+    it("remove then sync excludes the item", async () => {
+        const config = baseMergedConfig({
+            removed: { command: "node", args: ["gone.js"], state: "deleted" },
+            active: { command: "node", args: ["here.js"], state: "enabled" },
+        });
+        await syncTool(toolId, config);
+        const passedMcps = mockSyncAll.mock.calls[0][0];
+        expect(passedMcps).not.toHaveProperty("removed");
+        expect(passedMcps).toHaveProperty("active");
+    });
+    // -----------------------------------------------------------------------
+    // Enable restores a deleted item
+    // -----------------------------------------------------------------------
+    it("enable restores a deleted item", () => {
+        // Simulating what the enable command does: set state from "deleted" to "enabled"
+        const item = { command: "node", args: ["restored.js"], state: "deleted" };
+        // Simulate enable action
+        item.state = "enabled";
+        expect(item.state).toBe("enabled");
+        // Now verify it would pass through the filter
+        const mcps = { restored: item };
+        const filtered = {};
+        for (const [name, cfg] of Object.entries(mcps)) {
+            if (cfg.state && cfg.state !== "enabled")
+                continue;
+            filtered[name] = cfg;
+        }
+        expect(filtered).toHaveProperty("restored");
+    });
+    // -----------------------------------------------------------------------
+    // Manifest migration: enabled:false -> state:disabled
+    // -----------------------------------------------------------------------
+    it("manifest migration converts enabled:false to state:disabled", () => {
+        const v1 = {
+            skills: {
+                foo: { name: "foo", enabled: false },
+                bar: { name: "bar", enabled: true },
+            },
+            mcps: {
+                pg: { command: "node", args: ["pg.js"], enabled: false },
+            },
+        };
+        const v2 = migrateManifestV1ToV2(v1);
+        const skills = v2.skills;
+        expect(skills.foo.state).toBe("disabled");
+        expect(skills.foo).not.toHaveProperty("enabled");
+        expect(skills.bar.state).toBe("enabled");
+        expect(skills.bar).not.toHaveProperty("enabled");
+        const mcps = v2.mcps;
+        expect(mcps.pg.state).toBe("disabled");
+        expect(mcps.pg).not.toHaveProperty("enabled");
+    });
+    // -----------------------------------------------------------------------
+    // Mixed states: only enabled items pass through
+    // -----------------------------------------------------------------------
+    it("mixed states: only enabled and undefined-state items pass through filter", async () => {
+        const config = baseMergedConfig({
+            a: { command: "node", args: ["a.js"], state: "enabled" },
+            b: { command: "node", args: ["b.js"], state: "disabled" },
+            c: { command: "node", args: ["c.js"], state: "deleted" },
+            d: { command: "node", args: ["d.js"] }, // undefined = enabled
+        });
+        await syncTool(toolId, config);
+        const passedMcps = mockSyncAll.mock.calls[0][0];
+        expect(Object.keys(passedMcps).sort()).toEqual(["a", "d"]);
+    });
+});
+//# sourceMappingURL=unified-item-state.integration.test.js.map

package/dist/__tests__/unified-item-state.integration.test.js.map

@@ -0,0 +1 @@
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package/dist/commands/add.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"add.d.ts","sourceRoot":"","sources":["../../src/commands/add.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAQpC,YAAY,EACV,eAAe,EACf,eAAe,EACf,cAAc,EACd,WAAW,EACX,aAAa,EACb,YAAY,GACb,MAAM,wBAAwB,CAAC;AAChC,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAgG1F;;GAEG;AACH,eAAO,MAAM,UAAU,SAGE,CAAC"}
+{"version":3,"file":"add.d.ts","sourceRoot":"","sources":["../../src/commands/add.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AASpC,YAAY,EACV,eAAe,EACf,eAAe,EACf,cAAc,EACd,WAAW,EACX,aAAa,EACb,YAAY,GACb,MAAM,wBAAwB,CAAC;AAChC,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAyG1F;;GAEG;AACH,eAAO,MAAM,UAAU,SAGE,CAAC"}

package/dist/commands/add.js

@@ -12,6 +12,7 @@
  */
 import { Command } from "commander";
 import { addSkill, addMcp, fetchMcpFromRegistry, } from "../core/add-helpers.js";
+import { getTracer } from "../core/global-tracer.js";
 export { parseSkillSource, addSkill, parseMcpName, addMcp } from "../core/add-helpers.js";
 /**
  * skill subcommand: mycelium add skill <source>
@@ -22,14 +23,18 @@ const skillCommand = new Command("skill")
     .option("-g, --global", "Add to global configuration (~/.mycelium/)")
     .option("-f, --force", "Overwrite existing skill")
     .action(async (source, options) => {
+    const log = getTracer().createTrace("add");
+    log.info({ scope: "skill", op: "add", msg: `Adding skill from ${source}`, item: source });
     const result = await addSkill(source, {
         global: options.global ?? true,
         force: options.force ?? false,
     });
     if (result.success) {
+        log.info({ scope: "skill", op: "add", msg: result.message ?? "Added", item: source });
         console.log(result.message);
     }
     else {
+        log.error({ scope: "skill", op: "add", msg: result.error ?? "Failed", item: source, error: result.error });
         console.error(`Error: ${result.error}`);
         process.exit(1);
     }
@@ -60,6 +65,8 @@ const mcpCommand = new Command("mcp")
             options.env = registryConfig.env;
         }
     }
+    const log = getTracer().createTrace("add");
+    log.info({ scope: "mcp", op: "add", msg: `Adding MCP ${name}`, item: name });
     if (!options.command) {
         console.error("Error: --command is required (or use --from-registry)");
         process.exit(1);
@@ -82,9 +89,11 @@ const mcpCommand = new Command("mcp")
         force: options.force ?? false,
     });
     if (result.success) {
+        log.info({ scope: "mcp", op: "add", msg: result.message ?? "Added", item: name });
         console.log(result.message);
     }
     else {
+        log.error({ scope: "mcp", op: "add", msg: result.error ?? "Failed", item: name, error: result.error });
         console.error(`Error: ${result.error}`);
         process.exit(1);
     }

package/dist/commands/add.js.map

@@ -1 +1 @@
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package/dist/commands/disable.d.ts

@@ -1,13 +1,14 @@
 /**
  * Disable Command Module
  *
- * Disable a skill or MCP globally or for a specific tool:
- * - mycelium disable <name>              # Disable skill/MCP at project level
- * - mycelium disable <name> --global     # Disable skill/MCP globally
- * - mycelium disable <name> --tool <id>  # Disable skill/MCP for specific tool only
+ * Disable a skill, MCP, hook, or memory item globally or for a specific tool:
+ * - mycelium disable <name>              # Disable item at project level
+ * - mycelium disable <name> --global     # Disable item globally
+ * - mycelium disable <name> --tool <id>  # Disable item for specific tool only
  */
 import { Command } from "commander";
 import { type ToolId } from "@mycelish/core";
+import { type ItemType } from "../core/manifest-state.js";
 export interface DisableOptions {
     name: string;
     tool?: ToolId;
@@ -18,15 +19,16 @@ export interface DisableOptions {
 export interface DisableResult {
     success: boolean;
     name: string;
-    type?: "skill" | "mcp";
+    type?: ItemType;
     level?: "global" | "project";
     tool?: ToolId;
     alreadyDisabled?: boolean;
+    pluginTakeover?: boolean;
     message?: string;
     error?: string;
 }
 /**
- * Disable a skill or MCP
+ * Disable a skill, MCP, hook, or memory item
  */
 export declare function disableSkillOrMcp(options: DisableOptions): Promise<DisableResult>;
 export declare const disableCommand: Command;

package/dist/commands/disable.d.ts.map

@@ -1 +1 @@
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