@murphai/murph 1.3.0 → 1.3.2

package/node_modules/@murphai/query/dist/personal-patterns.js

@@ -0,0 +1,401 @@
+import { isValidIanaTimeZone, JUNCTION_WEARABLE_TAG_EXTERNAL_REF_FACET, JUNCTION_WEARABLE_TAG_NOTE_TYPE, normalizeActivityKindToken, } from "@murphai/contracts";
+import { resolveAdherenceObservationActivityKind, resolveActivityEvidenceLocalDate, resolveInterventionSessionLocalDate, } from "./experiment-adherence.js";
+import { selectMetricSeries, } from "./metrics/index.js";
+import { buildWearableSummaryBundle } from "./wearables.js";
+import { isWearableSleepPatternEligibleNight, resolveWearableSleepAnalysisDate, } from "./wearables/sleep-pattern.js";
+const DEFAULT_WINDOW_DAYS = 120;
+const MAX_FACTORS = 6;
+const MIN_MATCHED_DAYS = 5;
+const MIN_WINDOW_DAYS = 21;
+const COMPARISON_SEARCH_DAYS = 35;
+// Product-owned and intentionally fail-closed. A new provider tag requires
+// explicit product evidence before it can acquire action semantics here.
+const PERSONAL_PATTERN_OURA_ACTION_TAG = "sauna";
+const JUNCTION_NOTE_RESOURCE_TYPE_PATTERN = /^junction-[a-z0-9]+(?:-[a-z0-9]+)*-note$/u;
+const OUTCOME_LIKE_FACTOR_TOKENS = new Set([
+    "heart-rate-variability",
+    "hrv",
+    "readiness",
+    "readiness-score",
+    "recovery",
+    "recovery-score",
+    "resting-heart-rate",
+    "rhr",
+    "sleep",
+    "sleep-efficiency",
+    "sleep-score",
+    "total-sleep",
+]);
+export function buildPersonalPatternReport(vault, options = {}) {
+    return buildPersonalPatternReportFromWearableBundle(vault, buildWearableSummaryBundle(vault), options);
+}
+export function buildPersonalPatternReportFromWearableBundle(vault, wearableBundle, options = {}) {
+    return buildPersonalPatternReportFromOutcomeSeries(vault, collectOutcomeSeries(wearableBundle, resolveWindow(options), readVaultTimeZone(vault)), options);
+}
+export function buildPersonalPatternReportFromWearableBundleAndMetricPoints(vault, wearableBundle, metricPoints, options = {}) {
+    const window = resolveWindow(options);
+    const wearableOutcomes = collectOutcomeSeries(wearableBundle, window, readVaultTimeZone(vault));
+    const wearableOutcomeIds = new Set(wearableOutcomes.map((outcome) => outcome.id));
+    const fallbackOutcomes = collectMetricPointRecoveryOutcomeSeries(metricPoints, window)
+        .filter((outcome) => !wearableOutcomeIds.has(outcome.id));
+    return buildPersonalPatternReportFromOutcomeSeries(vault, [...wearableOutcomes, ...fallbackOutcomes], options);
+}
+function buildPersonalPatternReportFromOutcomeSeries(vault, outcomes, options) {
+    const asOfDate = resolveAsOfDate(options.asOf);
+    const windowDays = normalizeWindowDays(options.windowDays);
+    const fromDate = addDays(asOfDate, -(windowDays - 1));
+    const factorAccumulators = collectFactorAccumulators(vault.events, fromDate, asOfDate);
+    const candidateFactors = collectFactors(factorAccumulators)
+        .filter((factor) => factor.observedDays >= MIN_MATCHED_DAYS);
+    const factorDatesById = new Map([...factorAccumulators.values()].map((factor) => [factor.token, factor.dates]));
+    const candidateCells = candidateFactors.flatMap((factor) => outcomes.map((outcome) => buildPatternCell(factor, factorDatesById.get(factor.id) ?? new Set(), outcome)));
+    const eligibleFactorIds = new Set(candidateCells
+        .filter((cell) => cell.stage !== "insufficient")
+        .map((cell) => cell.factorId));
+    const factors = candidateFactors
+        .filter((factor) => eligibleFactorIds.has(factor.id))
+        .sort((left, right) => right.observedDays - left.observedDays || left.label.localeCompare(right.label))
+        .slice(0, MAX_FACTORS);
+    const visibleFactorIds = new Set(factors.map((factor) => factor.id));
+    const selectedCells = candidateCells.filter((cell) => visibleFactorIds.has(cell.factorId));
+    const testedCells = selectedCells.filter((cell) => cell.stage !== "insufficient");
+    const visibleOutcomeIds = new Set(testedCells.map((cell) => cell.outcomeId));
+    return {
+        asOfDate,
+        cells: selectedCells.filter((cell) => visibleFactorIds.has(cell.factorId) && visibleOutcomeIds.has(cell.outcomeId)),
+        factors,
+        lagDays: 1,
+        notes: [
+            "Each cell compares an action day with the next day's outcome.",
+            "Comparison days use the same weekday when a nearby match is available.",
+            "A repeated link is still an association, not proof that the action caused the change.",
+        ],
+        outcomes: outcomes
+            .filter((outcome) => visibleOutcomeIds.has(outcome.id))
+            .map(({ values: _values, meaningfulAbsoluteDelta: _absolute, meaningfulRelativeDelta: _relative, ...outcome }) => outcome),
+        repeatableCellCount: testedCells.filter((cell) => cell.stage === "new_clue" || cell.stage === "seen_again" || cell.stage === "worth_testing").length,
+        testedCellCount: testedCells.length,
+        windowDays,
+    };
+}
+export function emptyPersonalPatternReport(asOfDate) {
+    return {
+        asOfDate,
+        cells: [],
+        factors: [],
+        lagDays: 1,
+        notes: [],
+        outcomes: [],
+        repeatableCellCount: 0,
+        testedCellCount: 0,
+        windowDays: DEFAULT_WINDOW_DAYS,
+    };
+}
+function collectFactors(accumulators) {
+    return [...accumulators.values()].map((factor) => ({
+        id: factor.token,
+        kind: factor.kinds.size === 2
+            ? "mixed"
+            : factor.kinds.has("activity") ? "activity" : "intervention",
+        label: humanizeToken(factor.token),
+        observedDays: factor.dates.size,
+    }));
+}
+function collectFactorAccumulators(events, fromDate, toDate) {
+    const factors = new Map();
+    for (const event of events) {
+        const candidate = readFactorCandidate(event);
+        if (!candidate)
+            continue;
+        const date = candidate.kind === "intervention"
+            ? resolveInterventionSessionLocalDate(event)
+            : resolveActivityEvidenceLocalDate(event);
+        if (!date || date < fromDate || date > toDate)
+            continue;
+        const existing = factors.get(candidate.token);
+        if (existing) {
+            existing.dates.add(date);
+            existing.kinds.add(candidate.kind);
+            continue;
+        }
+        factors.set(candidate.token, {
+            dates: new Set([date]),
+            kinds: new Set([candidate.kind]),
+            token: candidate.token,
+        });
+    }
+    return factors;
+}
+function readFactorCandidate(event) {
+    if (event.kind === "activity_session") {
+        const token = canonicalFactorToken(resolveAdherenceObservationActivityKind({
+            attributes: event.attributes,
+        }));
+        return token && !OUTCOME_LIKE_FACTOR_TOKENS.has(token)
+            ? { kind: "activity", token }
+            : null;
+    }
+    if (event.kind === "intervention_session") {
+        // PR #1673 emitted every Junction note tag as a completed intervention.
+        // Those legacy rows have incorrect canonical meaning and must not remain
+        // action factors while any explicit storage repair is evaluated separately.
+        if (isLegacyJunctionNoteTagIntervention(event))
+            return null;
+        const status = readString(event.attributes.sessionStatus);
+        if (status === "missed" || status === "skipped")
+            return null;
+        const token = canonicalFactorToken(normalizeActivityKindToken(readString(event.attributes.interventionType)));
+        return token && !OUTCOME_LIKE_FACTOR_TOKENS.has(token)
+            ? { kind: "intervention", token }
+            : null;
+    }
+    if (!isEligibleJunctionOuraWearableTagNote(event)
+        || !event.tags.includes(PERSONAL_PATTERN_OURA_ACTION_TAG)) {
+        return null;
+    }
+    return { kind: "intervention", token: PERSONAL_PATTERN_OURA_ACTION_TAG };
+}
+function isEligibleJunctionOuraWearableTagNote(event) {
+    if (event.kind !== "note")
+        return false;
+    if (readString(event.attributes.noteType) !== JUNCTION_WEARABLE_TAG_NOTE_TYPE)
+        return false;
+    const externalRef = readRecord(event.attributes.externalRef);
+    const dataOrigin = readRecord(event.attributes.dataOrigin);
+    return readString(event.attributes.source) === "device"
+        && readString(externalRef?.system) === "junction"
+        && readString(externalRef?.resourceType) === "junction-oura-note"
+        && readString(externalRef?.facet) === JUNCTION_WEARABLE_TAG_EXTERNAL_REF_FACET
+        && readString(dataOrigin?.sourceProviderSlug) === "oura";
+}
+function isLegacyJunctionNoteTagIntervention(event) {
+    const externalRef = readRecord(event.attributes.externalRef);
+    const resourceType = readString(externalRef?.resourceType);
+    const facet = readString(externalRef?.facet);
+    return readString(event.attributes.source) === "device"
+        && readString(externalRef?.system) === "junction"
+        && resourceType !== null
+        && JUNCTION_NOTE_RESOURCE_TYPE_PATTERN.test(resourceType)
+        && facet?.startsWith("tag-") === true;
+}
+function collectOutcomeSeries(wearableBundle, window, fallbackTimeZone) {
+    const { fromDate, outcomeToDate: toDate } = window;
+    const sleep = wearableBundle.sleepNights
+        .filter(isWearableSleepPatternEligibleNight)
+        .filter((day) => {
+        const outcomeDate = resolveWearableSleepAnalysisDate(day, fallbackTimeZone);
+        return outcomeDate >= fromDate && outcomeDate <= toDate;
+    });
+    const recovery = wearableBundle.recoveryDays.filter((day) => day.date >= fromDate && day.date <= toDate);
+    return [
+        outcome("total-sleep", "Total sleep", "min", 15, 0.03, sleep, (day) => day.totalSleepMinutes, (day) => resolveWearableSleepAnalysisDate(day, fallbackTimeZone)),
+        outcome("sleep-score", "Sleep score", "score", 3, 0.03, sleep, (day) => day.sleepScore, (day) => resolveWearableSleepAnalysisDate(day, fallbackTimeZone)),
+        outcome("sleep-efficiency", "Sleep efficiency", "%", 2, 0.02, sleep, (day) => day.sleepEfficiency, (day) => resolveWearableSleepAnalysisDate(day, fallbackTimeZone)),
+        outcome("recovery-score", "Recovery score", "score", 3, 0.03, recovery, (day) => day.recoveryScore),
+        outcome("readiness-score", "Readiness score", "score", 3, 0.03, recovery, (day) => day.readinessScore),
+        outcome("hrv", "HRV", "ms", 2, 0.05, recovery, (day) => day.hrv),
+        outcome("resting-heart-rate", "Resting heart rate", "bpm", 2, 0.03, recovery, (day) => day.restingHeartRate),
+    ].filter((series) => series.values.size >= MIN_MATCHED_DAYS * 2);
+}
+function collectMetricPointRecoveryOutcomeSeries(metricPoints, window) {
+    return [
+        metricPointOutcome("readiness-score", "Readiness score", "score", 3, 0.03, "readiness-score", metricPoints, window),
+        metricPointOutcome("hrv", "HRV", "ms", 2, 0.05, "hrv-rmssd", metricPoints, window),
+        metricPointOutcome("resting-heart-rate", "Resting heart rate", "bpm", 2, 0.03, "resting-heart-rate", metricPoints, window),
+    ].filter((series) => series.values.size >= MIN_MATCHED_DAYS * 2);
+}
+function metricPointOutcome(id, label, unit, meaningfulAbsoluteDelta, meaningfulRelativeDelta, metricKey, metricPoints, window) {
+    const rows = selectMetricSeries({
+        from: window.fromDate,
+        metricKey,
+        points: metricPoints,
+        to: window.outcomeToDate,
+    }).rows;
+    return {
+        id,
+        label,
+        meaningfulAbsoluteDelta,
+        meaningfulRelativeDelta,
+        unit,
+        values: new Map(rows.flatMap((row) => row.confidence !== "none" && row.value !== null
+            ? [[row.date, row.value]]
+            : [])),
+    };
+}
+function outcome(id, label, unit, meaningfulAbsoluteDelta, meaningfulRelativeDelta, days, select, selectDate = (day) => day.date) {
+    const values = new Map();
+    for (const day of days) {
+        const metric = select(day);
+        const value = metric.selection.value;
+        if (value === null || metric.confidence.level === "none")
+            continue;
+        values.set(selectDate(day), value);
+    }
+    return { id, label, meaningfulAbsoluteDelta, meaningfulRelativeDelta, unit, values };
+}
+function readVaultTimeZone(vault) {
+    const value = vault.metadata?.timezone;
+    return typeof value === "string" && isValidIanaTimeZone(value) ? value : null;
+}
+function buildPatternCell(factor, factorDates, outcome) {
+    const pairs = matchComparisonDays(factorDates, outcome.values);
+    const exposedDates = pairs.map((pair) => pair.exposedDate).sort();
+    const base = {
+        comparisonDays: pairs.length,
+        exposedDays: pairs.length,
+        factorId: factor.id,
+        firstExposedDate: exposedDates[0] ?? null,
+        lastExposedDate: exposedDates.at(-1) ?? null,
+        outcomeId: outcome.id,
+    };
+    if (pairs.length < MIN_MATCHED_DAYS
+        || !base.firstExposedDate
+        || !base.lastExposedDate
+        || daysBetween(base.firstExposedDate, base.lastExposedDate) < MIN_WINDOW_DAYS) {
+        return {
+            ...base,
+            comparisonMean: null,
+            delta: null,
+            deltaPercent: null,
+            direction: "flat",
+            exposedMean: null,
+            repeatedDirection: false,
+            stage: "insufficient",
+        };
+    }
+    const exposedMean = mean(pairs.map((pair) => pair.exposedValue));
+    const comparisonMean = mean(pairs.map((pair) => pair.comparisonValue));
+    const delta = exposedMean - comparisonMean;
+    const deltaPercent = comparisonMean === 0
+        ? null
+        : (delta / Math.abs(comparisonMean)) * 100;
+    const meaningfulDelta = Math.max(outcome.meaningfulAbsoluteDelta, Math.abs(comparisonMean) * outcome.meaningfulRelativeDelta);
+    const repeatedDirection = hasRepeatedDirection(pairs, delta);
+    const direction = Math.abs(delta) < meaningfulDelta
+        ? "flat"
+        : delta > 0 ? "higher" : "lower";
+    const spanDays = daysBetween(base.firstExposedDate, base.lastExposedDate);
+    let stage = "no_clear_pattern";
+    if (direction !== "flat" && repeatedDirection) {
+        stage = pairs.length >= 12 && spanDays >= 56 && Math.abs(delta) >= meaningfulDelta * 1.5
+            ? "worth_testing"
+            : pairs.length >= 8 && spanDays >= 42
+                ? "seen_again"
+                : "new_clue";
+    }
+    return {
+        ...base,
+        comparisonMean: round(comparisonMean),
+        delta: round(delta),
+        deltaPercent: deltaPercent === null ? null : round(deltaPercent),
+        direction,
+        exposedMean: round(exposedMean),
+        repeatedDirection,
+        stage,
+    };
+}
+function matchComparisonDays(factorDates, outcomeValues) {
+    const usedComparisonDates = new Set();
+    const eligibleComparisonDates = [...outcomeValues.keys()]
+        .map((outcomeDate) => addDays(outcomeDate, -1))
+        .filter((date) => !factorDates.has(date));
+    const pairs = [];
+    for (const exposedDate of [...factorDates].sort()) {
+        const exposedValue = outcomeValues.get(addDays(exposedDate, 1));
+        if (exposedValue === undefined)
+            continue;
+        const comparisonDate = eligibleComparisonDates
+            .filter((date) => !usedComparisonDates.has(date))
+            .filter((date) => weekday(date) === weekday(exposedDate))
+            .filter((date) => Math.abs(daysBetween(date, exposedDate)) <= COMPARISON_SEARCH_DAYS)
+            .sort((left, right) => Math.abs(daysBetween(left, exposedDate)) - Math.abs(daysBetween(right, exposedDate))
+            || left.localeCompare(right))[0];
+        if (!comparisonDate)
+            continue;
+        const comparisonValue = outcomeValues.get(addDays(comparisonDate, 1));
+        if (comparisonValue === undefined)
+            continue;
+        usedComparisonDates.add(comparisonDate);
+        pairs.push({ comparisonDate, comparisonValue, exposedDate, exposedValue });
+    }
+    return pairs;
+}
+function hasRepeatedDirection(pairs, fullDelta) {
+    const midpoint = Math.floor(pairs.length / 2);
+    const first = pairs.slice(0, midpoint);
+    const second = pairs.slice(midpoint);
+    if (first.length < 2 || second.length < 2 || fullDelta === 0)
+        return false;
+    const firstDelta = mean(first.map((pair) => pair.exposedValue - pair.comparisonValue));
+    const secondDelta = mean(second.map((pair) => pair.exposedValue - pair.comparisonValue));
+    return Math.sign(firstDelta) === Math.sign(fullDelta) && Math.sign(secondDelta) === Math.sign(fullDelta);
+}
+function resolveWindow(options) {
+    const asOfDate = resolveAsOfDate(options.asOf);
+    const windowDays = normalizeWindowDays(options.windowDays);
+    return {
+        fromDate: addDays(asOfDate, -(windowDays - 1)),
+        outcomeToDate: addDays(asOfDate, 1),
+    };
+}
+function resolveAsOfDate(value) {
+    const date = value instanceof Date ? value : new Date(value ?? Date.now());
+    if (Number.isNaN(date.valueOf()))
+        throw new TypeError("Personal Patterns asOf must be a valid date.");
+    return date.toISOString().slice(0, 10);
+}
+function normalizeWindowDays(value) {
+    if (value === undefined)
+        return DEFAULT_WINDOW_DAYS;
+    if (!Number.isInteger(value) || value < 28 || value > 366) {
+        throw new RangeError("Personal Patterns windowDays must be an integer from 28 through 366.");
+    }
+    return value;
+}
+function addDays(value, amount) {
+    const date = new Date(`${value}T00:00:00.000Z`);
+    date.setUTCDate(date.getUTCDate() + amount);
+    return date.toISOString().slice(0, 10);
+}
+function daysBetween(left, right) {
+    return Math.round((Date.parse(`${right}T00:00:00.000Z`) - Date.parse(`${left}T00:00:00.000Z`)) / 86400000);
+}
+function weekday(value) {
+    return new Date(`${value}T00:00:00.000Z`).getUTCDay();
+}
+function mean(values) {
+    return values.reduce((sum, value) => sum + value, 0) / values.length;
+}
+function round(value) {
+    return Number(value.toFixed(2));
+}
+function readRecord(value) {
+    return typeof value === "object" && value !== null && !Array.isArray(value)
+        ? value
+        : null;
+}
+function readString(value) {
+    return typeof value === "string" && value.trim() ? value.trim() : null;
+}
+function canonicalFactorToken(value) {
+    switch (value) {
+        case "run": return "running";
+        case "walk": return "walking";
+        case "bike":
+        case "biking":
+        case "cycle":
+        case "ride": return "cycling";
+        case "swim": return "swimming";
+        case "hike": return "hiking";
+        case "row": return "rowing";
+        case "strength-training":
+        case "weightlifting":
+        case "weights": return "strength";
+        default: return value;
+    }
+}
+function humanizeToken(value) {
+    const words = value.replace(/[-_]+/gu, " ");
+    return `${words.charAt(0).toUpperCase()}${words.slice(1)}`;
+}
+//# sourceMappingURL=personal-patterns.js.map

package/node_modules/@murphai/query/dist/personal-patterns.js.map

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package/node_modules/@murphai/query/dist/projection/entity-store.js

@@ -85,12 +85,12 @@ function queryStoredCanonicalEntities(database, filters) {
         parameters.push(...filters.kinds);
     }
     if (filters.from) {
-        whereClauses.push("(date >= ? OR occurred_at >= ?)");
-        parameters.push(filters.from, `${filters.from}T00:00:00.000Z`);
+        whereClauses.push("COALESCE(date, substr(occurred_at, 1, 10)) >= ?");
+        parameters.push(filters.from);
     }
     if (filters.to) {
-        whereClauses.push("(date <= ? OR occurred_at <= ?)");
-        parameters.push(filters.to, `${filters.to}T23:59:59.999Z`);
+        whereClauses.push("COALESCE(date, substr(occurred_at, 1, 10)) <= ?");
+        parameters.push(filters.to);
     }
     const limit = filters.limit === null ? null : normalizeCanonicalEntityLimit(filters.limit ?? 1_000);
     const limitSql = limit === null ? "" : "LIMIT ?";

package/node_modules/@murphai/query/dist/projection/entity-store.js.map

@@ -1 +1 @@
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package/node_modules/@murphai/query/dist/projection/schema.d.ts

@@ -2,7 +2,7 @@ import type { QueryProjectionStatus } from "../query-projection-types.ts";
 export type DatabaseSync = import("node:sqlite").DatabaseSync;
 export type SqliteRow = Record<string, unknown>;
 export declare const QUERY_PROJECTION_SCHEMA_ID = "murph.query-projection";
-export declare const QUERY_PROJECTION_SQLITE_VERSION = 20;
+export declare const QUERY_PROJECTION_SQLITE_VERSION = 24;
 export interface QueryProjectionLocation {
     absolutePath: string;
     dbPath: string;

package/node_modules/@murphai/query/dist/projection/schema.d.ts.map

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package/node_modules/@murphai/query/dist/projection/schema.js

@@ -5,7 +5,11 @@ export const QUERY_PROJECTION_SCHEMA_ID = "murph.query-projection";
 // 18: Rebuild metric identities and canonical values after lab catalog alias changes.
 // 19: Rebuild test-result identities after expanded lab-only alias curation.
 // 20: Rebuild canonical workout-day rollups and split workout from activity minutes.
-export const QUERY_PROJECTION_SQLITE_VERSION = 20;
+// 21: Rebuild stored body-state summaries after adding composition metric envelopes.
+// 22: Rebuild activity summaries with independent intensity and daily heart-rate facts.
+// 23: Rebuild body summaries and MetricPoints after sparse-body selection semantics.
+// 24: Store bounded per-workout stream features in wearable activity summaries.
+export const QUERY_PROJECTION_SQLITE_VERSION = 24;
 export function expectString(value, field) {
     if (typeof value !== "string") {
         throw new TypeError(`Expected ${field} to be a string.`);

package/node_modules/@murphai/query/dist/projection/schema.js.map

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package/node_modules/@murphai/query/dist/projection/wearable-summary-compose.js

@@ -393,6 +393,10 @@ function wearableDatasetFromProjectedBundle(bundle, activityEvidenceRows) {
         provenanceDiagnostics: [],
         rawMetricCandidates: metricCandidates,
         sleepWindows,
+        workoutFeatures: bundle.activityDays.flatMap((summary) => summary.workoutFeatures.map((feature) => ({
+            date: summary.date,
+            feature,
+        }))),
     };
 }
 function storedRowProvider(row) {
@@ -655,8 +659,12 @@ function bodyStateResolvedMetrics(summary) {
     return [
         summary.bmi,
         summary.bodyFatPercentage,
+        summary.bodyWaterPercentage,
+        summary.boneMassPercentage,
         summary.leanBodyMassKg,
+        summary.muscleMassPercentage,
         summary.temperature,
+        summary.visceralFatIndex,
         summary.waistCircumference,
         summary.weightKg,
     ];