@murphai/murph 0.2.13 → 1.0.0

package/dist/commands/experiment.js

@@ -1,17 +1,21 @@
-import { EXPERIMENT_STATUSES } from '@murphai/contracts';
+import { EXPERIMENT_STATUSES, experimentOutcomeSchema, experimentProgressSnapshotSchema, } from '@murphai/contracts';
 import { Cli, z } from 'incur';
+import { requestIdFromOptions, withBaseOptions, } from '@murphai/operator-config/command-helpers';
 import { inputFileOptionSchema, normalizeInputFileOption, } from '@murphai/vault-usecases';
-import { experimentCreateResultSchema, occurredAtOptionSchema, listItemSchema, localDateSchema, pathSchema, showResultSchema, slugSchema, } from '@murphai/operator-config/vault-cli-contracts';
-import { registerLifecycleEntityGroup } from './entity-command-groups.js';
+import { experimentCreateResultSchema, listEntitySchema, localDateSchema, pathSchema, showResultSchema, slugSchema, } from '@murphai/operator-config/vault-cli-contracts';
 import { normalizeOccurredAtOption } from './occurred-at-option.js';
+import { commonListLimitOptionSchema } from './command-factory-primitives.js';
 const experimentStatusSchema = z.enum(EXPERIMENT_STATUSES);
+const experimentLookupArgSchema = z.object({
+    id: z.string().min(1).describe('Experiment id or slug to resolve.'),
+});
 const experimentListResultSchema = z.object({
     vault: pathSchema,
     filters: z.object({
         status: experimentStatusSchema.nullable(),
         limit: z.number().int().positive().max(200),
     }),
-    items: z.array(listItemSchema),
+    items: z.array(listEntitySchema),
     count: z.number().int().nonnegative(),
     nextCursor: z.string().min(1).nullable(),
 });
@@ -28,117 +32,249 @@ const experimentLifecycleResultSchema = experimentUpdateResultSchema.extend({
     eventId: z.string().min(1),
     ledgerFile: pathSchema,
 });
+const experimentSessionLogResultSchema = z.object({
+    vault: pathSchema,
+    experimentId: z.string().min(1),
+    lookupId: z.string().min(1),
+    slug: slugSchema,
+    eventId: z.string().min(1),
+    ledgerFile: pathSchema,
+    created: z.boolean(),
+    kind: z.literal('intervention_session'),
+});
+const experimentContextLogResultSchema = z.object({
+    vault: pathSchema,
+    experimentId: z.string().min(1),
+    lookupId: z.string().min(1),
+    slug: slugSchema,
+    eventId: z.string().min(1),
+    ledgerFile: pathSchema,
+    created: z.boolean(),
+    kind: z.enum(['note', 'supplement_intake', 'experiment_context']),
+});
+const experimentProgressResultSchema = z.object({
+    vault: pathSchema,
+    experimentId: z.string().min(1),
+    lookupId: z.string().min(1),
+    slug: slugSchema,
+    asOf: localDateSchema,
+    progress: experimentProgressSnapshotSchema,
+});
+const experimentOutcomeResultSchema = z.object({
+    vault: pathSchema,
+    experimentId: z.string().min(1),
+    lookupId: z.string().min(1),
+    slug: slugSchema,
+    asOf: localDateSchema,
+    outcome: experimentOutcomeSchema,
+    outcomePath: pathSchema.nullable().optional(),
+    updatedExperiment: z.boolean().optional(),
+});
 export function registerExperimentCommands(cli, services) {
-    registerLifecycleEntityGroup(cli, {
-        commandName: 'experiment',
-        description: 'Experiment bank commands routed through the core write API.',
-        create: {
-            name: 'create',
-            description: 'Create a baseline experiment document.',
-            args: z.object({
-                slug: slugSchema,
-            }),
-            options: {
-                title: z.string().min(1).optional().describe('Optional human-readable title.'),
-                hypothesis: z.string().min(1).optional().describe('Optional experiment hypothesis.'),
-                startedOn: localDateSchema.optional().describe('Optional experiment start date.'),
-                status: experimentStatusSchema.optional().describe('Optional experiment status.'),
-            },
-            output: experimentCreateResultSchema,
-            async run({ args, options, requestId }) {
-                return services.core.createExperiment({
-                    vault: String(options.vault ?? ''),
-                    requestId,
-                    slug: String(args.slug ?? ''),
-                    title: typeof options.title === 'string' ? options.title : undefined,
-                    hypothesis: typeof options.hypothesis === 'string' ? options.hypothesis : undefined,
-                    startedOn: typeof options.startedOn === 'string' ? options.startedOn : undefined,
-                    status: typeof options.status === 'string' ? options.status : undefined,
-                });
-            },
+    const experiment = Cli.create('experiment', {
+        description: 'Experiment bank commands routed through the core write and query APIs.',
+    });
+    experiment.command('create', {
+        description: 'Create a baseline experiment document.',
+        args: z.object({
+            slug: slugSchema,
+        }),
+        options: withBaseOptions({
+            title: z.string().min(1).optional().describe('Optional human-readable title.'),
+            hypothesis: z.string().min(1).optional().describe('Optional experiment hypothesis.'),
+            startedOn: localDateSchema.optional().describe('Optional experiment start date.'),
+            status: experimentStatusSchema.optional().describe('Optional experiment status.'),
+        }),
+        output: experimentCreateResultSchema,
+        async run({ args, options }) {
+            return services.core.createExperiment({
+                vault: String(options.vault ?? ''),
+                requestId: requestIdFromOptions(options),
+                slug: String(args.slug ?? ''),
+                title: typeof options.title === 'string' ? options.title : undefined,
+                hypothesis: typeof options.hypothesis === 'string' ? options.hypothesis : undefined,
+                startedOn: typeof options.startedOn === 'string' ? options.startedOn : undefined,
+                status: typeof options.status === 'string' ? options.status : undefined,
+            });
+        },
+    });
+    experiment.command('show', {
+        description: 'Show one experiment by canonical id or slug.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions(),
+        output: showResultSchema,
+        async run({ args, options }) {
+            return services.query.showExperiment({
+                lookup: args.id,
+                vault: options.vault,
+                requestId: requestIdFromOptions(options),
+            });
+        },
+    });
+    experiment.command('list', {
+        description: 'List experiments through the query read model.',
+        args: z.object({}),
+        options: withBaseOptions({
+            limit: commonListLimitOptionSchema,
+            status: experimentStatusSchema.optional().describe('Optional experiment status filter.'),
+        }),
+        output: experimentListResultSchema,
+        async run({ options }) {
+            return services.query.listExperiments({
+                vault: options.vault,
+                requestId: requestIdFromOptions(options),
+                status: options.status,
+                limit: options.limit,
+            });
+        },
+    });
+    experiment.command('update', {
+        description: 'Update one experiment frontmatter/body payload from a JSON payload file or stdin.',
+        args: z.object({}),
+        options: withBaseOptions({
+            input: inputFileOptionSchema,
+        }),
+        output: experimentUpdateResultSchema,
+        async run({ options }) {
+            return services.core.updateExperiment({
+                vault: String(options.vault ?? ''),
+                requestId: requestIdFromOptions(options),
+                inputFile: normalizeInputFileOption(String(options.input ?? '')),
+            });
+        },
+    });
+    experiment.command('checkpoint', {
+        description: 'Append one experiment checkpoint event from a JSON payload file or stdin.',
+        args: z.object({}),
+        options: withBaseOptions({
+            input: inputFileOptionSchema,
+        }),
+        output: experimentLifecycleResultSchema,
+        async run({ options }) {
+            return services.core.checkpointExperiment({
+                vault: String(options.vault ?? ''),
+                requestId: requestIdFromOptions(options),
+                inputFile: normalizeInputFileOption(String(options.input ?? '')),
+            });
         },
-        show: {
-            description: 'Show one experiment by canonical id or slug.',
-            argName: 'id',
-            argSchema: z.string().min(1).describe('Experiment id or slug to resolve.'),
-            output: showResultSchema,
-            async run(input) {
-                return services.query.showExperiment({
-                    lookup: input.id,
-                    vault: input.vault,
-                    requestId: input.requestId,
-                });
-            },
+    });
+    experiment.command('stop', {
+        description: 'Stop one experiment by id or slug and append a stop lifecycle event.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions({
+            occurredAt: z
+                .string()
+                .min(1)
+                .optional()
+                .describe('Optional stop timestamp in ISO 8601 form or YYYY-MM-DD form.'),
+            note: z.string().min(1).optional().describe('Optional stop note.'),
+        }),
+        output: experimentLifecycleResultSchema,
+        async run({ args, options }) {
+            return services.core.stopExperiment({
+                vault: options.vault,
+                requestId: requestIdFromOptions(options),
+                lookup: args.id,
+                occurredAt: await normalizeOccurredAtOption({
+                    vault: options.vault,
+                    occurredAt: typeof options.occurredAt === 'string' ? options.occurredAt : undefined,
+                }),
+                note: typeof options.note === 'string' ? options.note : undefined,
+            });
         },
-        list: {
-            description: 'List experiments through the query read model.',
-            statusOption: experimentStatusSchema.optional().describe('Optional experiment status filter.'),
-            output: experimentListResultSchema,
-            async run(input) {
-                return services.query.listExperiments({
-                    vault: input.vault,
-                    requestId: input.requestId,
-                    status: input.status,
-                    limit: input.limit ?? 50,
-                });
-            },
+    });
+    experiment.command('progress', {
+        description: 'Read the deterministic progress summary for one experiment.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions({
+            asOf: localDateSchema.optional().describe('Optional analysis date in YYYY-MM-DD form.'),
+        }),
+        output: experimentProgressResultSchema,
+        async run({ args, options }) {
+            return services.query.showExperimentProgress({
+                vault: options.vault,
+                requestId: requestIdFromOptions(options),
+                lookup: args.id,
+                asOf: options.asOf,
+            });
         },
-        update: {
-            name: 'update',
-            args: z.object({}),
-            description: 'Update one experiment frontmatter/body payload from a JSON payload file or stdin.',
-            options: {
-                input: inputFileOptionSchema,
-            },
-            output: experimentUpdateResultSchema,
-            async run({ options, requestId }) {
-                return services.core.updateExperiment({
-                    vault: String(options.vault ?? ''),
-                    requestId,
-                    inputFile: normalizeInputFileOption(String(options.input ?? '')),
-                });
-            },
+    });
+    const session = Cli.create('session', {
+        description: 'Experiment session logging commands.',
+    });
+    session.command('log', {
+        description: 'Log one structured intervention session for an experiment from a JSON payload file or stdin.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions({
+            input: inputFileOptionSchema,
+        }),
+        output: experimentSessionLogResultSchema,
+        async run({ args, options }) {
+            return services.core.logExperimentSession({
+                vault: String(options.vault ?? ''),
+                requestId: requestIdFromOptions(options),
+                lookup: args.id,
+                inputFile: normalizeInputFileOption(String(options.input ?? '')),
+            });
         },
-        checkpoint: {
-            name: 'checkpoint',
-            args: z.object({}),
-            description: 'Append one experiment checkpoint event from a JSON payload file or stdin.',
-            options: {
-                input: inputFileOptionSchema,
-            },
-            output: experimentLifecycleResultSchema,
-            async run({ options, requestId }) {
-                return services.core.checkpointExperiment({
-                    vault: String(options.vault ?? ''),
-                    requestId,
-                    inputFile: normalizeInputFileOption(String(options.input ?? '')),
-                });
-            },
+    });
+    const context = Cli.create('context', {
+        description: 'Experiment context and confounder logging commands.',
+    });
+    context.command('log', {
+        description: 'Log one experiment-linked context record from a JSON payload file or stdin.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions({
+            input: inputFileOptionSchema,
+        }),
+        output: experimentContextLogResultSchema,
+        async run({ args, options }) {
+            return services.core.logExperimentContext({
+                vault: String(options.vault ?? ''),
+                requestId: requestIdFromOptions(options),
+                lookup: args.id,
+                inputFile: normalizeInputFileOption(String(options.input ?? '')),
+            });
         },
-        stop: {
-            description: 'Stop one experiment by id or slug and append a stop lifecycle event.',
-            argName: 'id',
-            argSchema: z.string().min(1).describe('Experiment id or slug to stop.'),
-            options: {
-                occurredAt: occurredAtOptionSchema
-                    .optional()
-                    .describe('Optional stop timestamp in ISO 8601 form or YYYY-MM-DD form.'),
-                note: z.string().min(1).optional().describe('Optional stop note.'),
-            },
-            output: experimentLifecycleResultSchema,
-            async run(input) {
-                return services.core.stopExperiment({
-                    vault: input.vault,
-                    requestId: input.requestId,
-                    lookup: input.id,
-                    occurredAt: await normalizeOccurredAtOption({
-                        vault: input.vault,
-                        occurredAt: typeof input.occurredAt === 'string' ? input.occurredAt : undefined,
-                    }),
-                    note: typeof input.note === 'string' ? input.note : undefined,
-                });
-            },
+    });
+    const outcome = Cli.create('outcome', {
+        description: 'Experiment outcome analysis commands.',
+    });
+    outcome.command('analyze', {
+        description: 'Run the deterministic final analysis for one experiment.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions({
+            asOf: localDateSchema.optional().describe('Optional analysis date in YYYY-MM-DD form.'),
+        }),
+        output: experimentOutcomeResultSchema,
+        async run({ args, options }) {
+            return services.query.analyzeExperimentOutcome({
+                vault: options.vault,
+                requestId: requestIdFromOptions(options),
+                lookup: args.id,
+                asOf: options.asOf,
+            });
+        },
+    });
+    outcome.command('write', {
+        description: 'Run the deterministic final analysis for one experiment and persist the outcome record.',
+        args: experimentLookupArgSchema,
+        options: withBaseOptions({
+            asOf: localDateSchema.optional().describe('Optional analysis date in YYYY-MM-DD form.'),
+        }),
+        output: experimentOutcomeResultSchema,
+        async run({ args, options }) {
+            return services.core.writeExperimentOutcome({
+                vault: options.vault,
+                requestId: requestIdFromOptions(options),
+                lookup: args.id,
+                asOf: options.asOf,
+            });
         },
     });
+    experiment.command(session);
+    experiment.command(context);
+    experiment.command(outcome);
+    cli.command(experiment);
 }
 //# sourceMappingURL=experiment.js.map

package/dist/commands/experiment.js.map

@@ -1 +1 @@
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package/dist/commands/export-intake-read-helpers.d.ts

@@ -121,11 +121,11 @@ export declare function showAssessmentManifest(vaultRoot: string, assessmentId:
     manifest: {
         schemaVersion: "murph.raw-import-manifest.v1";
         importId: string;
-        importKind: "assessment" | "document" | "meal" | "device_batch" | "measurement_batch" | "sample_batch" | "workout_batch";
+        importKind: "assessment" | "capture" | "document" | "meal" | "device_batch" | "measurement_batch" | "sample_batch" | "workout_batch";
         importedAt: string;
         source: string | null;
         owner: {
-            kind: "assessment" | "document" | "meal" | "device_batch" | "sample_batch" | "workout_batch" | "measurement" | "workout";
+            kind: "assessment" | "measurement" | "capture" | "document" | "meal" | "device_batch" | "sample_batch" | "workout_batch" | "workout";
             id: string;
             partition?: string | undefined;
         };

package/dist/commands/food.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"food.d.ts","sourceRoot":"","sources":["../../src/commands/food.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,GAAG,EAAK,MAAM,OAAO,CAAA;AAS9B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAA;AAkI5D,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,QAAQ,EAAE,aAAa,QA6FzE"}
+{"version":3,"file":"food.d.ts","sourceRoot":"","sources":["../../src/commands/food.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,GAAG,EAAK,MAAM,OAAO,CAAA;AAS9B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAA;AA8J5D,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,QAAQ,EAAE,aAAa,QA6FzE"}

package/dist/commands/food.js

@@ -99,6 +99,25 @@ function createFoodScheduleCommandConfig(services) {
         },
     };
 }
+function createFoodUnscheduleCommandConfig(services) {
+    return {
+        args: z.object({
+            id: z.string().min(1).describe('Food id or slug to unschedule.'),
+        }),
+        description: 'Unschedule one remembered food from daily auto-log meal creation.',
+        hint: 'This clears the recurring auto-log setting and removes the scheduled assistant job while keeping the food record.',
+        options: withBaseOptions({}),
+        output: showResultSchema,
+        async run(context) {
+            return services.core.editFood({
+                vault: context.options.vault,
+                requestId: requestIdFromOptions(context.options),
+                lookup: context.args.id,
+                clear: ['autoLogDaily'],
+            });
+        },
+    };
+}
 export function registerFoodCommands(cli, services) {
     const food = createRegistryDocEntityGroup({
         commandName: 'food',
@@ -153,6 +172,9 @@ export function registerFoodCommands(cli, services) {
             },
         },
     });
+    food.command('rename', createFoodRenameCommandConfig(services));
+    food.command('schedule', createFoodScheduleCommandConfig(services));
+    food.command('unschedule', createFoodUnscheduleCommandConfig(services));
     food.command('edit', createDirectEntityEditCommandDefinition({
         arg: {
             name: 'id',
@@ -184,8 +206,6 @@ export function registerFoodCommands(cli, services) {
             });
         },
     }));
-    food.command('rename', createFoodRenameCommandConfig(services));
-    food.command('schedule', createFoodScheduleCommandConfig(services));
     cli.command(food);
 }
 //# sourceMappingURL=food.js.map

package/dist/commands/food.js.map

@@ -1 +1 @@
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package/dist/commands/inbox.d.ts.map

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