@murphai/murph 0.2.12 → 1.0.0

package/node_modules/@murphai/vault-usecases/dist/usecases/document-meal-read.js

@@ -1,14 +1,12 @@
-import { readFile } from 'node:fs/promises';
 import path from 'node:path';
 import { rawImportManifestSchema } from '@murphai/contracts';
-import { parseRawImportManifest } from '@murphai/core';
 import { z } from 'zod';
-import { firstString, isJsonObject, loadQueryRuntime, toOwnedEventCommandShowEntity, } from '../commands/query-record-command-helpers.js';
+import { firstString, loadQueryRuntime, toOwnedEventCommandShowEntity, } from '../commands/query-record-command-helpers.js';
 import { VaultCliError } from '@murphai/operator-config/vault-cli-errors';
 import { pathSchema } from '@murphai/operator-config/vault-cli-contracts';
+import { normalizeOptionalRelativePath, relativePathEntries, relativePathStrings, } from './vault-usecase-helpers.js';
 import { deleteEventRecord, editEventRecord, } from './event-record-mutations.js';
-import { asListEnvelope, toListEntity } from './shared.js';
-import { relativePathEntries } from './vault-usecase-helpers.js';
+import { asListEnvelope, readRawImportManifest, toListEntity } from './shared.js';
 const DEFAULT_LIST_LIMIT = 50;
 const OWNED_EVENT_LINK_KEYS = [];
 export const documentLookupSchema = z
@@ -27,25 +25,19 @@ export const rawImportManifestResultSchema = z.object({
     manifestFile: pathSchema,
     manifest: rawImportManifestSchema,
 });
-function stringArray(value) {
-    if (!Array.isArray(value)) {
-        return [];
-    }
-    return value.filter((entry) => typeof entry === 'string' && entry.trim().length > 0);
-}
 function uniqueStrings(values) {
     return [...new Set(values.map((value) => value.trim()).filter((value) => value.length > 0))];
 }
 function resolveManifestArtifactPaths(record) {
-    const documentPath = firstString(record.attributes, ['documentPath', 'document_path']);
+    const documentPath = normalizeOptionalRelativePath(firstString(record.attributes, ['documentPath', 'document_path']));
     return uniqueStrings([
         ...relativePathEntries(record.attributes.attachments),
-        ...stringArray(record.attributes.rawRefs),
+        ...relativePathStrings(record.attributes.rawRefs),
         ...(documentPath ? [documentPath] : []),
-        ...stringArray(record.attributes.photoPaths),
-        ...stringArray(record.attributes.photo_paths),
-        ...stringArray(record.attributes.audioPaths),
-        ...stringArray(record.attributes.audio_paths),
+        ...relativePathStrings(record.attributes.photoPaths),
+        ...relativePathStrings(record.attributes.photo_paths),
+        ...relativePathStrings(record.attributes.audioPaths),
+        ...relativePathStrings(record.attributes.audio_paths),
     ]);
 }
 function resolveManifestFile(record, expectedKind) {
@@ -70,38 +62,6 @@ async function loadOwnedRecord(vault, lookup, expectedKind) {
     }
     return record;
 }
-async function readImportManifest(vault, manifestFile) {
-    const manifestPath = path.join(vault, ...manifestFile.split('/'));
-    let manifestText;
-    try {
-        manifestText = await readFile(manifestPath, 'utf8');
-    }
-    catch (error) {
-        throw new VaultCliError('manifest_missing', `Manifest file "${manifestFile}" is missing from the vault.`, {
-            cause: error instanceof Error ? error.message : String(error),
-        });
-    }
-    let manifest;
-    try {
-        manifest = JSON.parse(manifestText);
-    }
-    catch (error) {
-        throw new VaultCliError('manifest_invalid', `Manifest file "${manifestFile}" is not valid JSON.`, {
-            cause: error instanceof Error ? error.message : String(error),
-        });
-    }
-    if (!isJsonObject(manifest)) {
-        throw new VaultCliError('manifest_invalid', `Manifest file "${manifestFile}" must contain a JSON object.`);
-    }
-    try {
-        return parseRawImportManifest(manifest);
-    }
-    catch (error) {
-        throw new VaultCliError('manifest_invalid', `Manifest file "${manifestFile}" does not match the raw import manifest contract.`, {
-            cause: error instanceof Error ? error.message : String(error),
-        });
-    }
-}
 async function showOwnedRecord(vault, lookup, expectedKind) {
     const record = await loadOwnedRecord(vault, lookup, expectedKind);
     return {
@@ -110,6 +70,7 @@ async function showOwnedRecord(vault, lookup, expectedKind) {
     };
 }
 async function listOwnedRecords(input) {
+    const limit = input.limit ?? DEFAULT_LIST_LIMIT;
     const query = await loadQueryRuntime('document/meal query reads');
     const readModel = await query.readVault(input.vault);
     const items = query
@@ -119,7 +80,7 @@ async function listOwnedRecords(input) {
         from: input.from,
         to: input.to,
     })
-        .slice(0, DEFAULT_LIST_LIMIT)
+        .slice(0, limit)
         .map((record) => {
         const entity = toOwnedEventCommandShowEntity(record, OWNED_EVENT_LINK_KEYS);
         return toListEntity(entity);
@@ -128,13 +89,13 @@ async function listOwnedRecords(input) {
         kind: input.expectedKind,
         from: input.from,
         to: input.to,
-        limit: DEFAULT_LIST_LIMIT,
+        limit,
     }, items);
 }
 async function showOwnedManifest(vault, lookup, expectedKind) {
     const record = await loadOwnedRecord(vault, lookup, expectedKind);
     const manifestFile = resolveManifestFile(record, expectedKind);
-    const manifest = await readImportManifest(vault, manifestFile);
+    const manifest = await readRawImportManifest(vault, manifestFile);
     return {
         vault,
         entityId: record.entityId,
@@ -166,6 +127,7 @@ export async function listMealRecords(input) {
         vault: input.vault,
         expectedKind: 'meal',
         from: input.from,
+        limit: input.limit,
         to: input.to,
     });
 }

package/node_modules/@murphai/vault-usecases/dist/usecases/document-meal-read.js.map

@@ -1 +1 @@
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+{"version":3,"file":"document-meal-read.js","sourceRoot":"","sources":["../../src/usecases/document-meal-read.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,uBAAuB,EAAE,MAAM,oBAAoB,CAAA;AAC5D,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAA;AACvB,OAAO,EACL,WAAW,EACX,gBAAgB,EAChB,6BAA6B,GAE9B,MAAM,6CAA6C,CAAA;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,2CAA2C,CAAA;AACzE,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AACzE,OAAO,EACL,6BAA6B,EAC7B,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,4BAA4B,CAAA;AACnC,OAAO,EACL,iBAAiB,EACjB,eAAe,GAChB,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,cAAc,EAAE,qBAAqB,EAAE,YAAY,EAAE,MAAM,aAAa,CAAA;AAIjF,MAAM,kBAAkB,GAAG,EAAE,CAAA;AAC7B,MAAM,qBAAqB,GAAa,EAAE,CAAA;AAE1C,MAAM,CAAC,MAAM,oBAAoB,GAAG,CAAC;KAClC,MAAM,EAAE;KACR,KAAK,CACJ,UAAU,EACV,mCAAmC,CACpC;KACA,QAAQ,CAAC,wBAAwB,CAAC,CAAA;AAErC,MAAM,CAAC,MAAM,gBAAgB,GAAG,CAAC;KAC9B,MAAM,EAAE;KACR,KAAK,CACJ,WAAW,EACX,gCAAgC,CACjC;KACA,QAAQ,CAAC,qBAAqB,CAAC,CAAA;AAElC,MAAM,CAAC,MAAM,6BAA6B,GAAG,CAAC,CAAC,MAAM,CAAC;IACpD,KAAK,EAAE,UAAU;IACjB,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3B,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IACvB,YAAY,EAAE,UAAU;IACxB,QAAQ,EAAE,uBAAuB;CAClC,CAAC,CAAA;AAMF,SAAS,aAAa,CAAC,MAAyB;IAC9C,OAAO,CAAC,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAAA;AAC9F,CAAC;AAED,SAAS,4BAA4B,CAAC,MAAmB;IACvD,MAAM,YAAY,GAAG,6BAA6B,CAChD,WAAW,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,cAAc,EAAE,eAAe,CAAC,CAAC,CAClE,CAAA;IAED,OAAO,aAAa,CAAC;QACnB,GAAG,mBAAmB,CAAC,MAAM,CAAC,UAAU,CAAC,WAAW,CAAC;QACrD,GAAG,mBAAmB,CAAC,MAAM,CAAC,UAAU,CAAC,OAAO,CAAC;QACjD,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QACvC,GAAG,mBAAmB,CAAC,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC;QACpD,GAAG,mBAAmB,CAAC,MAAM,CAAC,UAAU,CAAC,WAAW,CAAC;QACrD,GAAG,mBAAmB,CAAC,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC;QACpD,GAAG,mBAAmB,CAAC,MAAM,CAAC,UAAU,CAAC,WAAW,CAAC;KACtD,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,MAAmB,EAAE,YAA8B;IAC9E,MAAM,aAAa,GAAG,4BAA4B,CAAC,MAAM,CAAC,CAAA;IAE1D,IAAI,aAAa,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC/B,MAAM,IAAI,aAAa,CACrB,kBAAkB,EAClB,6CAA6C,YAAY,KAAK,MAAM,CAAC,QAAQ,IAAI,CAClF,CAAA;IACH,CAAC;IAED,MAAM,WAAW,GAAG,aAAa,CAC/B,aAAa,CAAC,GAAG,CAAC,CAAC,YAAY,EAAE,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CACtE,CAAA;IAED,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC7B,MAAM,IAAI,aAAa,CACrB,kBAAkB,EAClB,qBAAqB,YAAY,KAAK,MAAM,CAAC,QAAQ,kDAAkD,EACvG;YACE,aAAa;SACd,CACF,CAAA;IACH,CAAC;IAED,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;AACzD,CAAC;AAED,KAAK,UAAU,eAAe,CAC5B,KAAa,EACb,MAAc,EACd,YAA8B;IAE9B,MAAM,KAAK,GAAG,MAAM,gBAAgB,CAAC,2BAA2B,CAAC,CAAA;IACjE,MAAM,SAAS,GAAG,MAAM,KAAK,CAAC,SAAS,CAAC,KAAK,CAAC,CAAA;IAC9C,MAAM,MAAM,GAAG,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,MAAM,CAAC,CAAA;IAExD,IAAI,CAAC,MAAM,IAAI,MAAM,CAAC,MAAM,KAAK,OAAO,IAAI,MAAM,CAAC,IAAI,KAAK,YAAY,EAAE,CAAC;QACzE,MAAM,IAAI,aAAa,CAAC,WAAW,EAAE,MAAM,YAAY,eAAe,MAAM,IAAI,CAAC,CAAA;IACnF,CAAC;IAED,OAAO,MAAM,CAAA;AACf,CAAC;AAED,KAAK,UAAU,eAAe,CAC5B,KAAa,EACb,MAAc,EACd,YAA8B;IAE9B,MAAM,MAAM,GAAG,MAAM,eAAe,CAAC,KAAK,EAAE,MAAM,EAAE,YAAY,CAAC,CAAA;IAEjE,OAAO;QACL,KAAK;QACL,MAAM,EAAE,6BAA6B,CAAC,MAAM,EAAE,qBAAqB,CAAC;KACrE,CAAA;AACH,CAAC;AAED,KAAK,UAAU,gBAAgB,CAAC,KAM/B;IACC,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,IAAI,kBAAkB,CAAA;IAC/C,MAAM,KAAK,GAAG,MAAM,gBAAgB,CAAC,2BAA2B,CAAC,CAAA;IACjE,MAAM,SAAS,GAAG,MAAM,KAAK,CAAC,SAAS,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;IACpD,MAAM,KAAK,GAAG,KAAK;SAChB,YAAY,CAAC,SAAS,EAAE;QACvB,QAAQ,EAAE,CAAC,OAAO,CAAC;QACnB,KAAK,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC;QAC3B,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,EAAE,EAAE,KAAK,CAAC,EAAE;KACb,CAAC;SACD,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC;SACf,GAAG,CAAC,CAAC,MAAmB,EAAE,EAAE;QAC3B,MAAM,MAAM,GAAG,6BAA6B,CAAC,MAAM,EAAE,qBAAqB,CAAC,CAAA;QAC3E,OAAO,YAAY,CAAC,MAAM,CAAC,CAAA;IAC7B,CAAC,CAAC,CAAA;IAEJ,OAAO,cAAc,CAAC,KAAK,CAAC,KAAK,EAAE;QACjC,IAAI,EAAE,KAAK,CAAC,YAAY;QACxB,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,EAAE,EAAE,KAAK,CAAC,EAAE;QACZ,KAAK;KACN,EAAE,KAAK,CAAC,CAAA;AACX,CAAC;AAED,KAAK,UAAU,iBAAiB,CAC9B,KAAa,EACb,MAAc,EACd,YAA8B;IAE9B,MAAM,MAAM,GAAG,MAAM,eAAe,CAAC,KAAK,EAAE,MAAM,EAAE,YAAY,CAAC,CAAA;IACjE,MAAM,YAAY,GAAG,mBAAmB,CAAC,MAAM,EAAE,YAAY,CAAC,CAAA;IAC9D,MAAM,QAAQ,GAAG,MAAM,qBAAqB,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;IAEjE,OAAO;QACL,KAAK;QACL,QAAQ,EAAE,MAAM,CAAC,QAAQ;QACzB,QAAQ,EAAE,MAAM,CAAC,QAAQ;QACzB,IAAI,EAAE,YAAY;QAClB,YAAY;QACZ,QAAQ;KACT,CAAA;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,KAAa,EAAE,MAAc;IACpE,OAAO,eAAe,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;AACnD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,KAIzC;IACC,OAAO,gBAAgB,CAAC;QACtB,KAAK,EAAE,KAAK,CAAC,KAAK;QAClB,YAAY,EAAE,UAAU;QACxB,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,EAAE,EAAE,KAAK,CAAC,EAAE;KACb,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CAAC,KAAa,EAAE,MAAc;IACtE,OAAO,iBAAiB,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,CAAC,CAAA;AACrD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,KAAa,EAAE,MAAc;IAChE,OAAO,eAAe,CAAC,KAAK,EAAE,MAAM,E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package/node_modules/@murphai/vault-usecases/dist/usecases/experiment-journal-vault.d.ts

@@ -1,10 +1,85 @@
+import { eventSourceSchema, experimentFrontmatterSchema } from '@murphai/contracts';
+import { z } from 'zod';
+declare const experimentStatusSchema: z.ZodEnum<{
+    planned: "planned";
+    active: "active";
+    paused: "paused";
+    completed: "completed";
+    abandoned: "abandoned";
+}>;
+type ExperimentStatusValue = z.infer<typeof experimentStatusSchema>;
+declare const experimentContextPayloadSchema: z.ZodUnion<readonly [z.ZodObject<{
+    occurredAt: z.ZodOptional<z.ZodString>;
+    source: z.ZodOptional<z.ZodEnum<{
+        manual: "manual";
+        import: "import";
+        device: "device";
+        derived: "derived";
+    }>>;
+    title: z.ZodOptional<z.ZodString>;
+    note: z.ZodOptional<z.ZodString>;
+    contextType: z.ZodString;
+    severity: z.ZodOptional<z.ZodEnum<{
+        potential_confounder: "potential_confounder";
+        safety: "safety";
+        info: "info";
+        blocking: "blocking";
+    }>>;
+    tags: z.ZodOptional<z.ZodArray<z.ZodString>>;
+}, z.core.$strip>, z.ZodObject<{
+    kind: z.ZodLiteral<"experiment_context">;
+    occurredAt: z.ZodOptional<z.ZodString>;
+    source: z.ZodOptional<z.ZodEnum<{
+        manual: "manual";
+        import: "import";
+        device: "device";
+        derived: "derived";
+    }>>;
+    title: z.ZodOptional<z.ZodString>;
+    note: z.ZodOptional<z.ZodString>;
+    contextType: z.ZodString;
+    severity: z.ZodOptional<z.ZodEnum<{
+        potential_confounder: "potential_confounder";
+        safety: "safety";
+        info: "info";
+        blocking: "blocking";
+    }>>;
+    tags: z.ZodOptional<z.ZodArray<z.ZodString>>;
+}, z.core.$strip>, z.ZodObject<{
+    kind: z.ZodLiteral<"note">;
+    occurredAt: z.ZodOptional<z.ZodString>;
+    source: z.ZodOptional<z.ZodEnum<{
+        manual: "manual";
+        import: "import";
+        device: "device";
+        derived: "derived";
+    }>>;
+    title: z.ZodOptional<z.ZodString>;
+    note: z.ZodString;
+    tags: z.ZodOptional<z.ZodArray<z.ZodString>>;
+}, z.core.$strip>, z.ZodObject<{
+    kind: z.ZodLiteral<"supplement_intake">;
+    occurredAt: z.ZodOptional<z.ZodString>;
+    source: z.ZodOptional<z.ZodEnum<{
+        manual: "manual";
+        import: "import";
+        device: "device";
+        derived: "derived";
+    }>>;
+    title: z.ZodOptional<z.ZodString>;
+    note: z.ZodOptional<z.ZodString>;
+    supplementName: z.ZodString;
+    dose: z.ZodNumber;
+    unit: z.ZodString;
+    tags: z.ZodOptional<z.ZodArray<z.ZodString>>;
+}, z.core.$strip>]>;
 export declare function createExperimentRecord(input: {
     vault: string;
     slug: string;
     title?: string;
     hypothesis?: string;
     startedOn?: string;
-    status?: string;
+    status?: ExperimentStatusValue;
 }): Promise<{
     vault: string;
     experimentId: string;
@@ -22,7 +97,7 @@ export declare function updateExperimentRecordFromInput(input: {
     lookupId: string;
     slug: string;
     experimentPath: string;
-    status: string;
+    status: "planned" | "active" | "paused" | "completed" | "abandoned";
     updated: true;
 }>;
 export declare function updateExperimentRecord(input: {
@@ -31,16 +106,23 @@ export declare function updateExperimentRecord(input: {
     title?: string;
     hypothesis?: string;
     startedOn?: string;
-    status?: string;
+    status?: ExperimentStatusValue;
     body?: string;
     tags?: string[];
+    protocolRef?: z.infer<typeof experimentFrontmatterSchema>['protocolRef'] | null;
+    runPlan?: z.infer<typeof experimentFrontmatterSchema>['runPlan'] | null;
+    analysisPlan?: z.infer<typeof experimentFrontmatterSchema>['analysisPlan'] | null;
+    onboarding?: z.infer<typeof experimentFrontmatterSchema>['onboarding'] | null;
+    assistantSupport?: z.infer<typeof experimentFrontmatterSchema>['assistantSupport'] | null;
+    outcome?: z.infer<typeof experimentFrontmatterSchema>['outcome'] | null;
+    outcomeRef?: z.infer<typeof experimentFrontmatterSchema>['outcomeRef'] | null;
 }): Promise<{
     vault: string;
     experimentId: string;
     lookupId: string;
     slug: string;
     experimentPath: string;
-    status: string;
+    status: "planned" | "active" | "paused" | "completed" | "abandoned";
     updated: true;
 }>;
 export declare function checkpointExperimentRecord(input: {
@@ -55,7 +137,7 @@ export declare function checkpointExperimentRecord(input: {
     lookupId: string;
     slug: string;
     experimentPath: string;
-    status: string;
+    status: "planned" | "active" | "paused" | "completed" | "abandoned";
     eventId: string;
     ledgerFile: string;
     updated: true;
@@ -69,7 +151,7 @@ export declare function checkpointExperimentRecordFromInput(input: {
     lookupId: string;
     slug: string;
     experimentPath: string;
-    status: string;
+    status: "planned" | "active" | "paused" | "completed" | "abandoned";
     eventId: string;
     ledgerFile: string;
     updated: true;
@@ -85,7 +167,7 @@ export declare function stopExperimentRecord(input: {
     lookupId: string;
     slug: string;
     experimentPath: string;
-    status: string;
+    status: "planned" | "active" | "paused" | "completed" | "abandoned";
     eventId: string;
     ledgerFile: string;
     updated: true;
@@ -113,18 +195,198 @@ export declare function showExperimentRecord(vault: string, lookup: string): Pro
 }>;
 export declare function listExperimentRecords(input: {
     vault: string;
-    status?: string;
+    status?: ExperimentStatusValue;
     limit: number;
 }): Promise<{
     vault: string;
     filters: {
-        status: string | null;
+        status: "planned" | "active" | "paused" | "completed" | "abandoned" | null;
         limit: number;
     };
     items: import("@murphai/operator-config/vault-cli-contracts").ListEntity[];
     count: number;
     nextCursor: string | null;
 }>;
+export declare function logExperimentSessionRecordFromInput(input: {
+    vault: string;
+    lookup: string;
+    inputFile: string;
+}): Promise<{
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    eventId: string;
+    ledgerFile: string;
+    created: boolean;
+    kind: "intervention_session";
+}>;
+export declare function logExperimentSessionRecord(input: {
+    vault: string;
+    lookup: string;
+    occurredAt?: string;
+    source?: z.infer<typeof eventSourceSchema>;
+    title?: string;
+    note?: string;
+    interventionType?: string;
+    status?: 'completed' | 'partial' | 'missed' | 'skipped';
+    sessionStatus?: 'completed' | 'partial' | 'missed' | 'skipped';
+    durationMinutes?: number;
+    protocolId?: string;
+    timing?: string;
+    temperatureC?: number;
+    afterExercise?: boolean;
+    symptoms?: string[];
+    confounders?: string[] | Record<string, string | number | boolean | null>;
+}): Promise<{
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    eventId: string;
+    ledgerFile: string;
+    created: boolean;
+    kind: "intervention_session";
+}>;
+export declare function logExperimentContextRecordFromInput(input: {
+    vault: string;
+    lookup: string;
+    inputFile: string;
+}): Promise<{
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    eventId: string;
+    ledgerFile: string;
+    created: boolean;
+    kind: "note" | "supplement_intake" | "experiment_context";
+}>;
+export declare function logExperimentContextRecord(input: {
+    vault: string;
+    lookup: string;
+    payload: z.infer<typeof experimentContextPayloadSchema>;
+}): Promise<{
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    eventId: string;
+    ledgerFile: string;
+    created: boolean;
+    kind: "note" | "supplement_intake" | "experiment_context";
+}>;
+export declare function showExperimentProgress(input: {
+    vault: string;
+    lookup: string;
+    asOf?: string;
+}): Promise<{
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    asOf: string;
+    progress: import("../query-runtime.js").QueryExperimentProgressSummary;
+}>;
+export declare function analyzeExperimentOutcomeRecord(input: {
+    vault: string;
+    lookup: string;
+    asOf?: string;
+}): Promise<{
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    asOf: string;
+    outcome: import("../query-runtime.js").QueryExperimentOutcomeSummary;
+}>;
+export declare function writeExperimentOutcomeRecord(input: {
+    vault: string;
+    lookup: string;
+    asOf?: string;
+}): Promise<{
+    outcome: {
+        outcomeId: string;
+        schema: "murph.experiment-outcome.v1";
+        schemaVersion: "murph.experiment-outcome.v1";
+        adherenceSummary: {
+            completedSessions: number;
+            minimumUsefulSessions: number | null;
+            status: "not_started" | "behind" | "on_track" | "met_minimum" | "met_target" | "unknown";
+            targetSessions: number | null;
+            adherenceLevel?: "partial" | "good" | "unknown" | "low" | undefined;
+        };
+        asOf: string;
+        conclusion: {
+            caveats: string[];
+            headline: string;
+            plainLanguage: string;
+        };
+        confidence: {
+            level: "low" | "high" | "medium";
+            reasons: string[];
+        };
+        confounders: string[];
+        experiment: {
+            id: string;
+            slug: string;
+            status: "planned" | "active" | "paused" | "completed" | "abandoned";
+            title: string;
+        };
+        metricResults: {
+            baselineDayCount: number;
+            baselineMean: number | null;
+            biomarkerKey: string;
+            completeness: "insufficient" | "partial" | "good";
+            deltaAbs: number | null;
+            deltaPct: number | null;
+            expectedDirection: "increase" | "decrease" | "stabilize" | null;
+            interventionDayCount: number;
+            interventionMean: number | null;
+            label: string;
+            movedAsExpected: boolean | null;
+            unit: string | null;
+            baseline?: {
+                mean: number | null;
+                daysWithData: number;
+                totalDays: number;
+                unit: string | null;
+            } | undefined;
+            intervention?: {
+                mean: number | null;
+                daysWithData: number;
+                totalDays: number;
+                unit: string | null;
+            } | undefined;
+        }[];
+        protocolRef: {
+            key: string;
+            pageRevisionId: string;
+            runSpecRevisionId: string;
+            testPlanId?: string | undefined;
+        } | null;
+        windows: {
+            baselineEnd: string | null;
+            baselineStart: string | null;
+            interventionEnd: string | null;
+            interventionStart: string | null;
+        };
+        generatedAt?: string | undefined;
+        runRef?: {
+            key: string;
+            pageRevisionId: string;
+            runSpecRevisionId: string;
+            testPlanId?: string | undefined;
+        } | undefined;
+    };
+    outcomePath: string;
+    updatedExperiment: boolean;
+    vault: string;
+    experimentId: string;
+    lookupId: string;
+    slug: string;
+    asOf: string;
+}>;
 export declare function ensureJournalRecord(input: {
     vault: string;
     date: string;
@@ -288,4 +550,5 @@ export declare function showVaultStats(vault: string): Promise<{
         experimentTitle: string | null;
     };
 }>;
+export {};
 //# sourceMappingURL=experiment-journal-vault.d.ts.map

package/node_modules/@murphai/vault-usecases/dist/usecases/experiment-journal-vault.d.ts.map

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