@murphai/murph 0.1.15 → 0.1.18

package/node_modules/@murphai/assistant-engine/dist/usecases/experiment-journal-vault.js

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+import { EXPERIMENT_STATUSES } from '@murphai/contracts';
+import { z } from 'zod';
+import { loadQueryRuntime, } from '../query-runtime.js';
+import { loadRuntimeModule } from '../runtime-import.js';
+import { VaultCliError } from '@murphai/operator-config/vault-cli-errors';
+import { isoTimestampSchema, localDateSchema, slugSchema, } from '@murphai/operator-config/vault-cli-contracts';
+import { asListEnvelope, readJsonPayload, } from './shared.js';
+import { compactObject, inferVaultLinkKind, isVaultQueryableRecordId, normalizeIsoTimestamp, normalizeOptionalText, toVaultCliError, toVaultMetadataCliError, stringArray, uniqueStrings, } from './vault-usecase-helpers.js';
+const experimentStatusSchema = z.enum(EXPERIMENT_STATUSES);
+const experimentSelectorPayloadSchema = z
+    .object({
+    lookup: z.string().min(1).optional(),
+    experimentId: z.string().min(1).optional(),
+    slug: slugSchema.optional(),
+})
+    .refine((value) => typeof value.lookup === 'string' ||
+    typeof value.experimentId === 'string' ||
+    typeof value.slug === 'string', 'Expected one of lookup, experimentId, or slug.');
+const experimentUpdatePayloadSchema = experimentSelectorPayloadSchema.extend({
+    title: z.string().min(1).optional(),
+    hypothesis: z.string().min(1).optional(),
+    startedOn: localDateSchema.optional(),
+    status: experimentStatusSchema.optional(),
+    body: z.string().optional(),
+    tags: z.array(slugSchema).optional(),
+});
+const experimentCheckpointPayloadSchema = experimentSelectorPayloadSchema.extend({
+    occurredAt: isoTimestampSchema.optional(),
+    title: z.string().min(1).optional(),
+    note: z.string().min(1).optional(),
+});
+const JOURNAL_LINK_RUNTIME_ACTIONS = {
+    eventIds: {
+        link: 'linkJournalEventIds',
+        unlink: 'unlinkJournalEventIds',
+    },
+    sampleStreams: {
+        link: 'linkJournalStreams',
+        unlink: 'unlinkJournalStreams',
+    },
+};
+export async function createExperimentRecord(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    const result = await core.createExperiment({
+        vaultRoot: input.vault,
+        slug: input.slug,
+        title: normalizeOptionalText(input.title) ?? input.slug,
+        hypothesis: normalizeOptionalText(input.hypothesis) ?? undefined,
+        startedOn: input.startedOn,
+        status: normalizeOptionalText(input.status) ?? 'active',
+    });
+    return {
+        vault: input.vault,
+        experimentId: result.experiment.id,
+        lookupId: result.experiment.id,
+        slug: result.experiment.slug,
+        experimentPath: result.experiment.relativePath,
+        created: result.created ?? true,
+    };
+}
+export async function updateExperimentRecordFromInput(input) {
+    const payload = experimentUpdatePayloadSchema.parse(await readJsonPayload(input.inputFile, 'experiment payload'));
+    return updateExperimentRecord({
+        vault: input.vault,
+        lookup: experimentLookupFromPayload(payload),
+        title: payload.title,
+        hypothesis: payload.hypothesis,
+        startedOn: payload.startedOn,
+        status: payload.status,
+        body: payload.body,
+        tags: payload.tags,
+    });
+}
+export async function updateExperimentRecord(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    const entity = await requireEntityFamily(input.vault, input.lookup, 'experiment');
+    try {
+        const result = await core.updateExperiment({
+            vaultRoot: input.vault,
+            relativePath: entity.path,
+            title: input.title,
+            hypothesis: input.hypothesis,
+            startedOn: input.startedOn,
+            status: input.status,
+            body: input.body,
+            tags: input.tags,
+        });
+        return {
+            vault: input.vault,
+            experimentId: result.experimentId,
+            lookupId: result.experimentId,
+            slug: result.slug,
+            experimentPath: result.relativePath,
+            status: result.status,
+            updated: result.updated,
+        };
+    }
+    catch (error) {
+        throw toVaultCliError(error);
+    }
+}
+export async function checkpointExperimentRecord(input) {
+    return appendExperimentLifecycleEvent({
+        vault: input.vault,
+        lookup: input.lookup,
+        mode: 'checkpoint',
+        occurredAt: input.occurredAt,
+        title: input.title ?? 'Checkpoint',
+        note: input.note,
+    });
+}
+export async function checkpointExperimentRecordFromInput(input) {
+    const payload = experimentCheckpointPayloadSchema.parse(await readJsonPayload(input.inputFile, 'experiment payload'));
+    return checkpointExperimentRecord({
+        vault: input.vault,
+        lookup: experimentLookupFromPayload(payload),
+        occurredAt: payload.occurredAt,
+        title: payload.title,
+        note: payload.note,
+    });
+}
+export async function stopExperimentRecord(input) {
+    return appendExperimentLifecycleEvent({
+        vault: input.vault,
+        lookup: input.lookup,
+        mode: 'stop',
+        occurredAt: input.occurredAt,
+        title: 'Stopped',
+        note: input.note,
+    });
+}
+function experimentLookupFromPayload(payload) {
+    return payload.lookup ?? payload.experimentId ?? payload.slug ?? '';
+}
+export async function showExperimentRecord(vault, lookup) {
+    const entity = await requireEntityFamily(vault, lookup, 'experiment');
+    return {
+        vault,
+        entity: toShowEntity(entity),
+    };
+}
+export async function listExperimentRecords(input) {
+    const query = await loadExperimentJournalVaultQueryRuntime();
+    const readModel = await readExperimentJournalVault(input.vault);
+    const items = query
+        .listEntities(readModel, {
+        families: ['experiment'],
+        statuses: input.status ? [input.status] : undefined,
+    })
+        .slice(0, input.limit)
+        .map(toShowEntity);
+    return asListEnvelope(input.vault, {
+        status: input.status ?? null,
+        limit: input.limit,
+    }, items);
+}
+export async function ensureJournalRecord(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    const result = await core.ensureJournalDay({
+        vaultRoot: input.vault,
+        date: input.date,
+    });
+    return {
+        vault: input.vault,
+        lookupId: `journal:${input.date}`,
+        created: result.created,
+        journalPath: result.relativePath,
+    };
+}
+export async function appendJournalText(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    try {
+        const result = await core.appendJournal({
+            vaultRoot: input.vault,
+            date: input.date,
+            text: input.text,
+        });
+        return {
+            vault: input.vault,
+            date: input.date,
+            lookupId: `journal:${input.date}`,
+            journalPath: result.relativePath,
+            created: result.created,
+            updated: result.updated,
+        };
+    }
+    catch (error) {
+        throw toVaultCliError(error, {
+            JOURNAL_DAY_MISSING: {
+                code: 'not_found',
+            },
+        });
+    }
+}
+export async function linkJournalEventIds(input) {
+    return mutateJournalLinks({
+        vault: input.vault,
+        date: input.date,
+        kind: 'eventIds',
+        values: input.eventIds,
+        operation: 'link',
+    });
+}
+export async function unlinkJournalEventIds(input) {
+    return mutateJournalLinks({
+        vault: input.vault,
+        date: input.date,
+        kind: 'eventIds',
+        values: input.eventIds,
+        operation: 'unlink',
+    });
+}
+export async function linkJournalStreams(input) {
+    return mutateJournalLinks({
+        vault: input.vault,
+        date: input.date,
+        kind: 'sampleStreams',
+        values: input.sampleStreams,
+        operation: 'link',
+    });
+}
+export async function unlinkJournalStreams(input) {
+    return mutateJournalLinks({
+        vault: input.vault,
+        date: input.date,
+        kind: 'sampleStreams',
+        values: input.sampleStreams,
+        operation: 'unlink',
+    });
+}
+export async function showJournalRecord(vault, lookup) {
+    const entity = await requireEntityFamily(vault, lookup, 'journal');
+    return {
+        vault,
+        entity: toShowEntity(entity),
+    };
+}
+export async function listJournalRecords(input) {
+    const query = await loadExperimentJournalVaultQueryRuntime();
+    const readModel = await readExperimentJournalVault(input.vault);
+    const items = query
+        .listEntities(readModel, {
+        families: ['journal'],
+        from: input.from,
+        to: input.to,
+    })
+        .slice(0, input.limit)
+        .map(toShowEntity);
+    return asListEnvelope(input.vault, {
+        kind: 'journal_day',
+        from: input.from,
+        to: input.to,
+        limit: input.limit,
+    }, items);
+}
+export async function showVaultSummary(vault) {
+    const readModel = await readExperimentJournalVault(vault);
+    const metadata = readModel.metadata;
+    return {
+        vault,
+        formatVersion: resolveVaultFormatVersion(metadata),
+        vaultId: stringOrNull(metadata?.vaultId),
+        title: stringOrNull(metadata?.title),
+        timezone: stringOrNull(metadata?.timezone),
+        createdAt: normalizeIsoTimestamp(stringOrNull(metadata?.createdAt)),
+        corePath: readModel.coreDocument?.path ?? null,
+        coreTitle: readModel.coreDocument?.title ?? null,
+        coreUpdatedAt: normalizeIsoTimestamp(readModel.coreDocument?.occurredAt),
+    };
+}
+function resolveVaultFormatVersion(metadata) {
+    if (!metadata) {
+        return null;
+    }
+    return typeof metadata.formatVersion === 'number' && Number.isInteger(metadata.formatVersion)
+        ? metadata.formatVersion
+        : null;
+}
+export async function updateVaultSummary(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    try {
+        const result = await core.updateVaultSummary({
+            vaultRoot: input.vault,
+            title: input.title,
+            timezone: input.timezone,
+        });
+        return {
+            vault: input.vault,
+            metadataFile: result.metadataFile,
+            corePath: result.corePath,
+            title: result.title,
+            timezone: result.timezone,
+            updatedAt: result.updatedAt,
+            updated: result.updated,
+        };
+    }
+    catch (error) {
+        throw toVaultCliError(error);
+    }
+}
+export async function showVaultStats(vault) {
+    const readModel = await readExperimentJournalVault(vault);
+    return {
+        vault,
+        counts: {
+            totalRecords: readModel.entities.length,
+            experiments: readModel.experiments.length,
+            journalEntries: readModel.journalEntries.length,
+            events: readModel.events.length,
+            samples: readModel.samples.length,
+            audits: readModel.audits.length,
+            assessments: readModel.assessments.length,
+            profileSnapshots: readModel.profileSnapshots.length,
+            goals: readModel.goals.length,
+            conditions: readModel.conditions.length,
+            allergies: readModel.allergies.length,
+            protocols: readModel.protocols.length,
+            history: readModel.history.length,
+            familyMembers: readModel.familyMembers.length,
+            geneticVariants: readModel.geneticVariants.length,
+        },
+        latest: {
+            eventOccurredAt: latestIsoTimestamp(readModel.events),
+            sampleOccurredAt: latestIsoTimestamp(readModel.samples),
+            journalDate: latestDate(readModel.journalEntries),
+            experimentTitle: readModel.experiments.at(-1)?.title ?? null,
+        },
+    };
+}
+async function appendExperimentLifecycleEvent(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    const entity = await requireEntityFamily(input.vault, input.lookup, 'experiment');
+    try {
+        const result = input.mode === 'checkpoint'
+            ? await core.checkpointExperiment({
+                vaultRoot: input.vault,
+                relativePath: entity.path,
+                occurredAt: input.occurredAt,
+                title: input.title,
+                note: input.note,
+            })
+            : await core.stopExperiment({
+                vaultRoot: input.vault,
+                relativePath: entity.path,
+                occurredAt: input.occurredAt,
+                title: input.title,
+                note: input.note,
+            });
+        return {
+            vault: input.vault,
+            experimentId: result.experimentId,
+            lookupId: result.experimentId,
+            slug: result.slug,
+            experimentPath: result.relativePath,
+            status: result.status,
+            eventId: result.eventId,
+            ledgerFile: result.ledgerFile,
+            updated: result.updated,
+        };
+    }
+    catch (error) {
+        throw toVaultCliError(error, {
+            INVALID_TIMESTAMP: {
+                code: 'invalid_timestamp',
+            },
+        });
+    }
+}
+async function mutateJournalLinks(input) {
+    const core = await loadExperimentJournalVaultCoreRuntime();
+    try {
+        const action = JOURNAL_LINK_RUNTIME_ACTIONS[input.kind][input.operation];
+        const result = await core[action]({
+            vaultRoot: input.vault,
+            date: input.date,
+            values: input.values,
+        });
+        return {
+            vault: input.vault,
+            date: input.date,
+            lookupId: `journal:${input.date}`,
+            journalPath: result.relativePath,
+            created: result.created,
+            changed: result.changed,
+            eventIds: result.eventIds,
+            sampleStreams: result.sampleStreams,
+        };
+    }
+    catch (error) {
+        throw toVaultCliError(error, {
+            JOURNAL_DAY_MISSING: {
+                code: 'not_found',
+            },
+        });
+    }
+}
+async function requireEntityFamily(vault, lookup, family) {
+    const query = await loadExperimentJournalVaultQueryRuntime();
+    const readModel = await readExperimentJournalVault(vault);
+    const entity = query.lookupEntityById(readModel, lookup);
+    if (!entity || entity.family !== family) {
+        throw new VaultCliError('not_found', `No ${family} found for "${lookup}".`, {
+            family,
+            lookup,
+        });
+    }
+    return entity;
+}
+function toShowEntity(entity) {
+    return {
+        id: entity.entityId,
+        kind: entity.kind,
+        title: entity.title ?? null,
+        occurredAt: normalizeIsoTimestamp(entity.occurredAt),
+        path: entity.path ?? null,
+        markdown: entity.body ?? null,
+        data: buildEntityData(entity),
+        links: buildEntityLinks(entity),
+    };
+}
+function buildEntityData(entity) {
+    return compactObject({
+        ...entity.attributes,
+        status: typeof entity.attributes.status === 'string'
+            ? entity.attributes.status
+            : entity.status,
+        experimentSlug: typeof entity.attributes.experimentSlug === 'string'
+            ? undefined
+            : entity.experimentSlug,
+        relatedIds: Array.isArray(entity.attributes.relatedIds) &&
+            entity.attributes.relatedIds.length > 0
+            ? undefined
+            : entity.relatedIds,
+    });
+}
+function buildEntityLinks(entity) {
+    const links = uniqueStrings([
+        ...entity.relatedIds,
+        ...stringArray(entity.attributes.eventIds),
+    ]);
+    return links.map((id) => ({
+        id,
+        kind: inferVaultLinkKind(id),
+        queryable: isVaultQueryableRecordId(id),
+    }));
+}
+async function loadExperimentJournalVaultQueryRuntime() {
+    return loadQueryRuntime();
+}
+async function readExperimentJournalVault(vault) {
+    const query = await loadExperimentJournalVaultQueryRuntime();
+    try {
+        return await query.readVault(vault);
+    }
+    catch (error) {
+        throw toVaultMetadataCliError(error);
+    }
+}
+async function loadExperimentJournalVaultCoreRuntime() {
+    return loadRuntimeModule('@murphai/core');
+}
+function latestIsoTimestamp(records) {
+    const latest = [...records]
+        .map((record) => normalizeIsoTimestamp(record.occurredAt))
+        .filter((value) => value !== null)
+        .at(-1);
+    return latest ?? null;
+}
+function latestDate(records) {
+    const latest = [...records]
+        .map((record) => record.date)
+        .filter((value) => typeof value === 'string' && value.length > 0)
+        .at(-1);
+    return latest ?? null;
+}
+function stringOrNull(value) {
+    return typeof value === 'string' && value.length > 0 ? value : null;
+}
+//# sourceMappingURL=experiment-journal-vault.js.map

package/node_modules/@murphai/assistant-engine/dist/usecases/experiment-journal-vault.js.map

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package/node_modules/@murphai/assistant-engine/dist/usecases/explicit-health-family-services.d.ts

@@ -0,0 +1,8 @@
+import type { CoreRuntimeModule, CoreWriteServices, QueryRuntimeModule, QueryServices } from "./types.js";
+export declare function createExplicitHealthCoreServices(loadRuntime: () => Promise<{
+    core: CoreRuntimeModule;
+}>): Pick<CoreWriteServices, "scaffoldProfileSnapshot" | "upsertProfileSnapshot" | "scaffoldGoal" | "upsertGoal" | "scaffoldCondition" | "upsertCondition" | "scaffoldAllergy" | "upsertAllergy" | "scaffoldProtocol" | "upsertProtocol" | "scaffoldHistoryEvent" | "upsertHistoryEvent" | "scaffoldBloodTest" | "upsertBloodTest" | "scaffoldFamilyMember" | "upsertFamilyMember" | "scaffoldGeneticVariant" | "upsertGeneticVariant" | "scaffoldSupplement" | "upsertSupplement" | "renameSupplement" | "stopProtocol" | "stopSupplement">;
+export declare function createExplicitHealthQueryServices(loadRuntime: () => Promise<{
+    query: QueryRuntimeModule;
+}>): Pick<QueryServices, "showAssessment" | "listAssessments" | "showProfile" | "listProfileSnapshots" | "showGoal" | "listGoals" | "showCondition" | "listConditions" | "showAllergy" | "listAllergies" | "showProtocol" | "listProtocols" | "showHistoryEvent" | "listHistoryEvents" | "showBloodTest" | "listBloodTests" | "showFamilyMember" | "listFamilyMembers" | "showGeneticVariant" | "listGeneticVariants" | "showSupplement" | "listSupplements" | "showSupplementCompound" | "listSupplementCompounds">;
+//# sourceMappingURL=explicit-health-family-services.d.ts.map

package/node_modules/@murphai/assistant-engine/dist/usecases/explicit-health-family-services.d.ts.map

@@ -0,0 +1 @@
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